CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LN829118	Candidatus Filomicrobium marinum strain strain W chromosome 1	2 crisprs	csa3,DEDDh,WYL,cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2	0	13	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LN829118_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN829118_1

576842-577184

Orphan

Consensus_repeat	Method
CAACGGACGAACGTCCGAAGGAA	CRISPRCasFinder

6 spacers

The CRISPR arrays of NZ_LN829118_1

>merge|NZ_LN829118|1|576842-577184|CRISPRCasFinder
GAACGGACGAACGGGCGAACGCCCACGGAGCATCTAGGAATCTAGGTGCTTTGGCGGTGGATTGGCATAAAGCGAACGGACGAACTGACGAACGTAACAACGGGCGATGTAAACAACGTCCGAACGGACGAACGCTCCCGAGATGGCGGAAAGCTTCGGAAAGGTGACGAACGGGCCAACGGACGAACGTCCGAACGCAAGAACGCACGTTGTAAACAACGGACGAACGTCCGAAGGAAAGAACGTCCGAACGGGCGAACGCAGCAACGGAACAACGTCCGCACGCAAGAACGGGCGAACGGACGAACGTCCGAAGGAATCAACGGACGAAGGGAAGAACGCC

>NZ_LN829118|1|1|576842-577184|CRISPRCasFinder
GAACGGACGAACGGGCGAACGCC	CACGGAGCATCTAGGAATCTAGGTGCTTTGGCGGTGGATTGGCATAAAGC
GAACGGACGAACTGACGAACGTA	ACAACGGGCGATGTAAA
CAACGTCCGAACGGACGAACGCT	CCCGAGATGGCGGAAAGCTTCGGAAAGGTGACGAACGGGC
CAACGGACGAACGTCCGAACGCA	AGAACGCACGTTGTAAA
CAACGGACGAACGTCCGAAGGAA	AGAACGTCCGAACGGGCGAACGCAG
CAACGGAACAACGTCCGCACGCA	AGAACGGGCGAACGGACGAACGTCCGAAGGAAT
CAACGGACGAAGGGAAGAACGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN829118.1\|WP_046479867.1\|573202_573499_-\|nucleotidyltransferase	unknown	unknown	gnl\|CDD\|224583
NZ_LN829118.1\|WP_046476516.1\|580358_580901_-\|CinA-family-protein	unknown	unknown	gnl\|CDD\|334938
NZ_LN829118.1\|WP_052743642.1\|579988_580378_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN829118.1\|WP_152024942.1\|581798_582545_-\|superoxide-dismutase-family-protein	unknown	unknown	gnl\|CDD\|376292
NZ_LN829118.1\|WP_046476480.1\|571370_571676_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN829118.1\|WP_046476505.1\|578194_578440_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN829118.1\|WP_046476500.1\|577968_578190_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN829118.1\|WP_046479865.1\|570743_571049_+\|ETC-complex-I-subunit	unknown	unknown	gnl\|CDD\|368126
NZ_LN829118.1\|WP_046476513.1\|578984_579167_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN829118.1\|WP_046476508.1\|578436_578760_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN829118.1\|WP_046476511.1\|578752_578971_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN829118.1\|WP_046476519.1\|580897_581389_-\|ferritin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|153118
NZ_LN829118.1\|WP_152025118.1\|575629_576013_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN829118.1\|WP_046476494.1\|576045_576780_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|349760
NZ_LN829118.1\|WP_046476515.1\|579166_579403_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN829118.1\|WP_046476483.1\|571668_572745_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN829118.1\|WP_046476478.1\|569313_569919_+\|CspA-family-cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_LN829118.1\|WP_052743640.1\|572784_573201_-\|DUF86-domain-containing-protein	unknown	unknown	gnl\|CDD\|225236
NZ_LN829118.1\|WP_046476488.1\|574489_575539_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|309782
NZ_LN829118.1\|WP_152025052.1\|570025_570445_+\|DUF192-domain-containing-protein	unknown	unknown	gnl\|CDD\|376876

Protein	Function_ID	Function_description	E-value
NZ_LN829118.1\|WP_046479867.1\|573202_573499_-\|nucleotidyltransferase	gnl\|CDD\|224583	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only].	5.66017e-17
NZ_LN829118.1\|WP_046476516.1\|580358_580901_-\|CinA-family-protein	gnl\|CDD\|334938	pfam02464, CinA, Competence-damaged protein. CinA is the first gene in the competence-inducible (cin) operon, and is thought to be specifically required at some stage in the process of transformation. This Pfam family consists of putative competence-damaged proteins from the cin operon. Some members of this family have nicotinamide mononucleotide (NMN) deamidase activity.	1.96343e-48
NZ_LN829118.1\|WP_152024942.1\|581798_582545_-\|superoxide-dismutase-family-protein	gnl\|CDD\|376292	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC). superoxide dismutases (SODs) catalyze the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene cause familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Structure is an eight-stranded beta sandwich, similar to the immunoglobulin fold.	2.05603e-45
NZ_LN829118.1\|WP_046476478.1\|569313_569919_+\|CspA-family-cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	4.62665e-20
NZ_LN829118.1\|WP_046476494.1\|576045_576780_-\|ParA-family-protein	gnl\|CDD\|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	3.7844e-17
NZ_LN829118.1\|WP_052743640.1\|572784_573201_-\|DUF86-domain-containing-protein	gnl\|CDD\|225236	COG2361, COG2361, Uncharacterized conserved protein [Function unknown].	4.49906e-21
NZ_LN829118.1\|WP_046476488.1\|574489_575539_-\|hypothetical-protein	gnl\|CDD\|309782	pfam04796, RepA_C, Plasmid encoded RepA protein. Family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood.	7.93008e-33
NZ_LN829118.1\|WP_046476519.1\|580897_581389_-\|ferritin-like-domain-containing-protein	gnl\|CDD\|153118	cd07909, YciF, YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyubiquinone hydroxylases (DMQH), DNA protecting proteins (DPS), and ubiquinol oxidases (AOX), and the aerobic cyclase system, Fe-containing subunit (ACSF).	5.31123e-68
NZ_LN829118.1\|WP_046479865.1\|570743_571049_+\|ETC-complex-I-subunit	gnl\|CDD\|368126	pfam04800, ETC_C1_NDUFA4, ETC complex I subunit conserved region. Family of pankaryotic NADH-ubiquinone oxidoreductase subunits (EC:1.6.5.3) (EC:1.6.99.3) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein.	6.89814e-54
NZ_LN829118.1\|WP_152025052.1\|570025_570445_+\|DUF192-domain-containing-protein	gnl\|CDD\|376876	pfam02643, DUF192, Uncharacterized ACR, COG1430. Two structures have been solved for members of this large (>500 members) family of bacterial proteins present mostly in environmental bacteria and metagenomes (distant homologs are also present in several Plasmodium species). TOPSAN analysis for Structure 3pjy shows that there is much similarity with the other solved structure, Structure 3m7a, solved for UniProt:Q2GA55 (Saro_0823), a homolog of Thermotoga maritima TM1668, UniProt:Q9X1Z6., The homolog in Caulobacter crescentus (CC1388), UniProt:Q9A8G6, is associated with CspD, a cold shock protein (CC1387), UniProt:Q9A8G7. However, the genomic context of UniProt:Q2GA55 is most conserved with a putative xylose isomerase, suggesting a possible role in extracellular sugar processing. Saro_0821, UniProt:Q2GA57, is annotated as an AMP-dependent synthetase and ligase. Structure 3m7a structure corresponds to the C-terminal (27-165) fragment of the YP_496102 (Saro_0823) protein and it is structurally unique, as the best hits from Dali have a Z-score of 3.8 (1nt0, 2j1t, 3kq4) and it is thus a likely candidate for a new fold. Interestingly, many of the top Dali hits are involved in sugar metabolism. There are no obvious active site-like cavities on the protein surface of 3m7a (http://www.topsan.org/Proteins/JCSG/).	1.73719e-43

>NZ_LN829118.1|WP_046476494.1|576045_576780_-|ParA-family-protein
MLDGHYPYTHRSAMTNTAANFISFASPKGGVGKSTSCLAIAGALLAAGHKVRIIDFDQTETIWRWYTTSPFAQTIPNLTVEKGPTDDIGPFVSHLYQTATDYVLLDLAGALSEIVLMIAAFANLTITPAKVSEPDIIEANKMAHNLHAVAKRIGKPINHRILLNEVPSSISNDELDLIQQIDESNLQRFKTLIRRRAAYSKSFSRGTLPHMSDTPDKKALAEIDALMDEITAFFAQPIQQKAAA
>NZ_LN829118.1|WP_152025118.1|575629_576013_-|hypothetical-protein
MALGIPPELQATMDAVKEVATAQNIPTQRFPSHASNKVTELQPTASEHHSGNLPRTSQPATQERKARGPRPAPVKRYSVDLPLYLIAEIREKAHRRNCNKRTLILNAFKDAGFTIKDIDIQESKTDE
>NZ_LN829118.1|WP_046476488.1|574489_575539_-|hypothetical-protein
MTNVQPMLVDTQVRDPDLLQRLDQAGTFMREIVYKQCVEEQARRDALSAMPAMKRRRISTRRNLEENGAASRDNLSHIHSVLALCSLPYQQQPISVREWNRSQGRMKLSITAGKLTDPTNGDWVDMPLPYGSRARLLLLHVCSEAIRKNSPNIEIEDSLSAFIRAMGYPVTGGKHGTLTTFKQQINALAACSMRIGLWDGNNGSRTINTQPFTSLSMEMFTAAPNQRVLWPSKLSLSREFFDTLAAHALPINIHAARAFANSPRKLDLLFWLGYRLHSLKSKVSIPWDKLSEQWGSNYSRFNNFKRDFAKEIAEIKEVFPKLPVVLTEAGCTISPGSPEAIALPRKPLK
>NZ_LN829118.1|WP_046479867.1|573202_573499_-|nucleotidyltransferase
MKKADAISRLHRNAQRLRSMGAASLYLFGSTARDKARSDSDIDIFIEPVKNRPFSLVDLIRMRDFLRRSLGSDVDLTTRRSLHPALRKDIHRSAVKVF
>NZ_LN829118.1|WP_052743640.1|572784_573201_-|DUF86-domain-containing-protein
MARSVDHLLKDILEEIAFIKKATSKLTLNSYAADDLTRRAVERAILTISEAVRGIPAKDLNSQPSIPWVEIKGIGNILRHEYHKVANEVIWDTLKKDFPPLGKAIRAIIKAKKSEKLKAPRKPANRATSTKRKPKAKK
>NZ_LN829118.1|WP_046476483.1|571668_572745_+|hypothetical-protein
MIDVLIFAGVVGSLGLVAVSAVLNYRFGIRLGGQDEVERHLYGFGLGLADIVKALMPFCLALAVGKRDWLAALGAGVFLVVASVSSFYAGIGLAAEHRLGNAGNNQSVIDRRNNLQAEQKRLQGRLEAIGQVGTHQEVENAIEAAYAQPYGRGKRTVAVHSDRCRKNMIATRVACAKIARMQVTLEQAREAEASWGRLREVQAALGGLDSSVQSADPQLDVLDRVFRWFDAPVEQADIRTGLLLGLGLLLELGSGLGLYTVTTPWRHRDRDVGRRMTTLGDVAVWADERLEAVRGGRLTANVVFNDYEAWCRDHNFVAMREGVFVEQLMALAHEVGIPMEQSGSNLEFRDVAFGKVVA
>NZ_LN829118.1|WP_046476480.1|571370_571676_+|hypothetical-protein
MARTLRERFAALRASVEQRAPPVVSERGKSKRLQLRVPDELLLQLAVIKLAEGGSTNKFCEGQIAEGAAKRIAELKLRFSVDTWEAIVASAHGCWREGAGD
>NZ_LN829118.1|WP_046479865.1|570743_571049_+|ETC-complex-I-subunit
MVVRIYKPAKTAMQSGRARTMEWVVEYEPESPREVEPLMGWTSSADMHSQVRLEFASKEDAIAYAERHGLAYRLIEPKDRKPVRKSYADNFKFGRIGSWTH
>NZ_LN829118.1|WP_152025052.1|570025_570445_+|DUF192-domain-containing-protein
MTESIADGQMPRETLTIQSGEKTHTFEVEVARLPQEKSRGLMYRTELPVGTGMLFPYEEPTEIQMWMRNTYISLDMVFIRADGRVHRIAAYTEPMSDDIVSSHGDATGVLEIGGGEASRLGIKAGDLVRHAHFGTASSR
>NZ_LN829118.1|WP_046476478.1|569313_569919_+|CspA-family-cold-shock-protein
MSDSKRPSGPFSEDFITYESVEALEEAGLEVFEVAGSIKWFDASKGYGFIVPDNGLGDVLLHVTCLRAGGFQTAYEGARVHCQVMKRPKGMQAFRILSMDESTAIHPSQLPQRTHVIVTPESDWERAICKWFNRVRGFGFLTRGEGTPDIFCHMETLRRFGFTELRPGQVVQVRYGYGEKGCMAAELKPDGQQTMGFPVQH
>NZ_LN829118.1|WP_046476500.1|577968_578190_-|hypothetical-protein
MILDANRFTVTISRETHQRLVALPFTRDAMSHAVPNDDGTITFPVPPHIRDALHRLHPDPDMAIQILLGLKTH
>NZ_LN829118.1|WP_046476505.1|578194_578440_-|hypothetical-protein
MSKPLKLYTVTFHDTLRVQVEAYATNPEAARSFAIKQWSDALWERADPTLEDTTCIILESFSRNYFEITEDDAPTLSTNES
>NZ_LN829118.1|WP_046476508.1|578436_578760_-|hypothetical-protein
MPSCICQNCGAPFHWIWEDAFDKFGFGDGDGQVETATVVDVLEQAGYVVKHDFWSLHNDVISSIKKDGIEQIPENTDIGYDNPRAYLPAAIVTLLDEKLPAAEGVRL
>NZ_LN829118.1|WP_046476511.1|578752_578971_-|hypothetical-protein
MISMLDMSTYRQSFIAESHEHALALADVDQERHGLDNWSEVSSSTEFEVIGEEPISGISNRQSPPNGGHNDA
>NZ_LN829118.1|WP_046476513.1|578984_579167_-|hypothetical-protein
MLLSPRDRAALQTLFPELPVRGLSGAALDRAIDTWFANDHYSNNPAYDYEDETDAHDPAC
>NZ_LN829118.1|WP_046476515.1|579166_579403_-|hypothetical-protein
MAQSKGSKPTHGVFHVREGKKGGKGFWTRIGAAWMHDDSKGLNIMFDLFPVGDGKIVVRVEEPKSNGDTATEGEGEQA
>NZ_LN829118.1|WP_052743642.1|579988_580378_-|hypothetical-protein
MKHQLLKWWRDYNLSIVLATCFLVSWIFQAWTGWREFSADQSSHQQAASIFGQEGYIWTFLAATFENWQSEFLQLLAMVVLTSFLIHRGSAESRDSDDRLEAKIDRIERTLAQLSKAPSSDREDVRIPE
>NZ_LN829118.1|WP_046476516.1|580358_580901_-|CinA-family-protein
MKKRVPELPALAADLLAAAKRAGLTIATAESCTAGTLAAVLADAPGGGEQFHGGFVTYTKQSKIEILGVETDLIRKHSAVSQPVAEAMAKACLARSSASLAIAVTGVAGPEPDEDNNPVGEIHVAIAHRHSGTWHRKYEFQKRQRSAMREAILRAALIFAQQRCESVQLTNEVKHETPAS
>NZ_LN829118.1|WP_046476519.1|580897_581389_-|ferritin-like-domain-containing-protein
MSVKTMEDLFVDTLKDIYYAEKQILKALPGMVKKANSAKLQDALETHRKETQGQIERLEQVFKIFDVEPRGKKCEAIEGIIAEAKEHMDEIEDSDVLDAGMIGSAQAVEHYEITRYGTLIAWAQQLGKPDAAELLEVNLEEEKNADMLLSKLARGSINKAAAE
>NZ_LN829118.1|WP_152024942.1|581798_582545_-|superoxide-dismutase-family-protein
MKSRLRFSSKYRGRMYRICREFLCEVPGRTQVPLVQELRSKVWNTCPREMLGQHTCFRDGQEGYAMRGSTISFLGICGMVLACVSAHAETIDAASAELQNVDGQVVGIVALRQTDTGGVWLNASFSNLPFGTHAFHIHEAGECEGDFKSAGGHYAPAGNNHGVLQKDGPHAGDLPNIHVPADGRLNVEVFAPNIDLARNAKNTLFDEDGSALVVHAGVDDYKSQPSGDAGARIACGVVTNKIIDSSQR

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Crispr_ID: NZ_LN829118_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN829118_2

2301730-2303466

TypeI-E?,TypeI-A

Consensus_repeat	Method
GGCTCCTCCGCCCACGCGGAGATCGACC	PILER-CR
GGCTCCTCCGCCCACGCGGAGATCGACCC	CRISPRCasFinder
GGCTCCTCCGCCCACGCGGAGATCGACCC	CRT
GGCTCCTCCGCCCACGCGGAGATCGACCC	PILER-CR

28 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas3

The CRISPR arrays of NZ_LN829118_2

>merge|NZ_LN829118|2|2301730-2303466|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GGCTCCTCCGCCCACGCGGAGATCGACCCTCAAAACAGCTTTCTACCGGGCCGGGTCGCTAGGCTCCTCCGCCCACGCGGAGATCGACCCCCGGCGTCGTCAAGCTTGACATTGACCGGATCGGCTCCTCCGCCCACGCGGAGATCGACCCGGAAAAGGGTTGGTGCCGGTCTTGTCTTCATCGGCTCCTCCGCCCACGCGGAGATCGACCCCACGGACGCGCTATCTCAGCCACTACGAGGAAGGCTCCTCCGCCCACGCGGAGATCGACCCCCCGCCCGAATAGTCTTGCCAGCCGGTACCCCGGCTCCTCCGCCCACGCGGAGATCGACCCGAGCATCCGAACTGGAAAGTCGTAGGCGGTTGGGCTCCTCCGCCCACGCGGAGATCGACCCGTCCTTACGTCATGAGAACGCAGCGGCAACAAGGCTCCTCCGCCCACGCGGAGATCGACCCCTTCGCCGCCATTCTCTCGACAGGCCCGCAGCGGCTCCTCCGCCCACGCGGAGATCGACCCCTACCCCAGTTCAGGAGGCTCTAGGAGGCATCGGCTCCTCCGCCCACGCGGAGATCGACCCGCCGACACTTTGTCTGCGGTGATGTCTTTCAGGGCTCCTCCGCCCACGCGGAGATCGACCCGGCACCGCTGCAACCTCCATTCCTCAAGGCACGGCTCCTCCGCCCACGCGGAGATCGACCCAATCCTATTCCCAACGCACTCCTTTACTGTTCGGCTCCTCCGCCCACGCGGAGATCGACCGGGACAGTAGCTCCGGCTGGGTGGCTGCTTTGTGGCTCCTCCGCCCACGCGGAGATCGACCCCTCCCGTAACACCTCCAGCGATTGCATTGGCGGGCTCCTCCGCCCACGCGGAGATCGACCCTGTCATTACCCCGTTGCCCTCTTTCTAGCCCTGGCTCCTCCGCCCACGCGGAGATCGACCTGCGAGTGAGCGCTTCCACAAGTGCGTGGTGGCGGCTCCTCCGCCCACGCGGAGATCGACCCTTGAATGTCTTCCTGAATATGGGCTGCCACCCGGCTCCTCCGCCCACGCGGAGATCGACCCTATGTCTCCATCAGCATTCCACTGCGCGAGGTGGCTCCTCCGCCCACGCGGAGATCGACCCCATTAGCCGAGACGTTTTCGCGAAATTTGACTGGCTCCTCCGCCCACGCGGAGATCGACCCAGAGTCGAAGCGCTCGCCCCGGTGTTTGCCGAGGCTCCTCCGCCCACGCGGAGATCGACCCTCTGGCTGTATTTCTGGGATCTGAGCTTCAGTGGCTCCTCCGCCCACGCGGAGATCGACCCGGAAAGGGCAGGCCTGGAATGGAGTGGCAGGGGGCTCCTCCGCCCACGCGGAGATCGACCCCACGATCAACGGGCAGCTTTTCCCGCTCCACCGGCTCCTCCGCCCACGCGGAGATCGACCCGATCGATGTGATAATCGCAACCACCCAACAGGGGCTCCTCCGCCCACGCGGAGATCGACCCGCAGCCAAGTCGTTGGAAGCACCCGCATCTCAGGCTCCTCCGCCCACGCGGAGATCGACCCTCAAAACAGCTTTCTACCGGGCCGGTCGCGACGGCTCCTCCGCCCACGCGGAGATCGACCCATCCCCACGCGCAAATGTAATCCCGGCGATATGGCTCCTCCGCCCACGCGGAGATCGACCCGCCTGCGGAGCTAGAAGCGCTCAACAAGGGTGGGCTCCTCCGTCTAAGCGGAGATGACGCG

>NZ_LN829118|2|1|2301730-2302672|PILER-CR
GGCTCCTCCGCCCACGCGGAGATCGACC	CTCAAAACAGCTTTCTACCGGGCCGGGTCGCTA
GGCTCCTCCGCCCACGCGGAGATCGACC	CCCGGCGTCGTCAAGCTTGACATTGACCGGATC
GGCTCCTCCGCCCACGCGGAGATCGACC	CGGAAAAGGGTTGGTGCCGGTCTTGTCTTCATC
GGCTCCTCCGCCCACGCGGAGATCGACC	CCACGGACGCGCTATCTCAGCCACTACGAGGAA
GGCTCCTCCGCCCACGCGGAGATCGACC	CCCCGCCCGAATAGTCTTGCCAGCCGGTACCCC
GGCTCCTCCGCCCACGCGGAGATCGACC	CGAGCATCCGAACTGGAAAGTCGTAGGCGGTTG
GGCTCCTCCGCCCACGCGGAGATCGACC	CGTCCTTACGTCATGAGAACGCAGCGGCAACAA
GGCTCCTCCGCCCACGCGGAGATCGACC	CCTTCGCCGCCATTCTCTCGACAGGCCCGCAGC
GGCTCCTCCGCCCACGCGGAGATCGACC	CCTACCCCAGTTCAGGAGGCTCTAGGAGGCATC
GGCTCCTCCGCCCACGCGGAGATCGACC	CGCCGACACTTTGTCTGCGGTGATGTCTTTCAG
GGCTCCTCCGCCCACGCGGAGATCGACC	CGGCACCGCTGCAACCTCCATTCCTCAAGGCAC
GGCTCCTCCGCCCACGCGGAGATCGACC	CAATCCTATTCCCAACGCACTCCTTTACTGTTC
GGCTCCTCCGCCCACGCGGAGATCGACC	GGGACAGTAGCTCCGGCTGGGTGGCTGCTTTGT
GGCTCCTCCGCCCACGCGGAGATCGACC	CCTCCCGTAACACCTCCAGCGATTGCATTGGCG
GGCTCCTCCGCCCACGCGGAGATCGACC	CTGTCATTACCCCGTTGCCCTCTTTCTAGCCCT
GGCTCCTCCGCCCACGCGGAGATCGACCTGCGAGTGAGCGCTTCCACAAGTGCGTGGTGGCGGCTCCTCCGCCCACGCGGAGATCGACCCTTGAATGTCTTCCTGAATATGGGCTGCCACCCGGCTCCTCCGCCCACGCGGAGATCGACCC	TATGTCTCCATCAGCATTCCACTGCGCGAGGT
GGCTCCTCCGCCCACGCGGAGATCGACCC	CATTAGCCGAGACGTTTTCGCGAAATTTGACT
GGCTCCTCCGCCCACGCGGAGATCGACCC	AGAGTCGAAGCGCTCGCCCCGGTGTTTGCCGA
GGCTCCTCCGCCCACGCGGAGATCGACCC	TCTGGCTGTATTTCTGGGATCTGAGCTTCAGT
GGCTCCTCCGCCCACGCGGAGATCGACCC	GGAAAGGGCAGGCCTGGAATGGAGTGGCAGGG
GGCTCCTCCGCCCACGCGGAGATCGACCC	CACGATCAACGGGCAGCTTTTCCCGCTCCACC
GGCTCCTCCGCCCACGCGGAGATCGACCC	GATCGATGTGATAATCGCAACCACCCAACAGG
GGCTCCTCCGCCCACGCGGAGATCGACCC	GCAGCCAAGTCGTTGGAAGCACCCGCATCTCA
GGCTCCTCCGCCCACGCGGAGATCGACCC	TCAAAACAGCTTTCTACCGGGCCGGTCGCGAC
GGCTCCTCCGCCCACGCGGAGATCGACCC	ATCCCCACGCGCAAATGTAATCCCGGCGATAT


>NZ_LN829118|2|2|2301730-2303466|CRISPRCasFinder
GGCTCCTCCGCCCACGCGGAGATCGACCC	TCAAAACAGCTTTCTACCGGGCCGGGTCGCTA
GGCTCCTCCGCCCACGCGGAGATCGACCC	CCGGCGTCGTCAAGCTTGACATTGACCGGATC
GGCTCCTCCGCCCACGCGGAGATCGACCC	GGAAAAGGGTTGGTGCCGGTCTTGTCTTCATC
GGCTCCTCCGCCCACGCGGAGATCGACCC	CACGGACGCGCTATCTCAGCCACTACGAGGAA
GGCTCCTCCGCCCACGCGGAGATCGACCC	CCCGCCCGAATAGTCTTGCCAGCCGGTACCCC
GGCTCCTCCGCCCACGCGGAGATCGACCC	GAGCATCCGAACTGGAAAGTCGTAGGCGGTTG
GGCTCCTCCGCCCACGCGGAGATCGACCC	GTCCTTACGTCATGAGAACGCAGCGGCAACAA
GGCTCCTCCGCCCACGCGGAGATCGACCC	CTTCGCCGCCATTCTCTCGACAGGCCCGCAGC
GGCTCCTCCGCCCACGCGGAGATCGACCC	CTACCCCAGTTCAGGAGGCTCTAGGAGGCATC
GGCTCCTCCGCCCACGCGGAGATCGACCC	GCCGACACTTTGTCTGCGGTGATGTCTTTCAG
GGCTCCTCCGCCCACGCGGAGATCGACCC	GGCACCGCTGCAACCTCCATTCCTCAAGGCAC
GGCTCCTCCGCCCACGCGGAGATCGACCC	AATCCTATTCCCAACGCACTCCTTTACTGTTC
GGCTCCTCCGCCCACGCGGAGATCGACCG	GGACAGTAGCTCCGGCTGGGTGGCTGCTTTGT
GGCTCCTCCGCCCACGCGGAGATCGACCC	CTCCCGTAACACCTCCAGCGATTGCATTGGCG
GGCTCCTCCGCCCACGCGGAGATCGACCC	TGTCATTACCCCGTTGCCCTCTTTCTAGCCCT
GGCTCCTCCGCCCACGCGGAGATCGACCT	GCGAGTGAGCGCTTCCACAAGTGCGTGGTGGC
GGCTCCTCCGCCCACGCGGAGATCGACCC	TTGAATGTCTTCCTGAATATGGGCTGCCACCC
GGCTCCTCCGCCCACGCGGAGATCGACCC	TATGTCTCCATCAGCATTCCACTGCGCGAGGT
GGCTCCTCCGCCCACGCGGAGATCGACCC	CATTAGCCGAGACGTTTTCGCGAAATTTGACT
GGCTCCTCCGCCCACGCGGAGATCGACCC	AGAGTCGAAGCGCTCGCCCCGGTGTTTGCCGA
GGCTCCTCCGCCCACGCGGAGATCGACCC	TCTGGCTGTATTTCTGGGATCTGAGCTTCAGT
GGCTCCTCCGCCCACGCGGAGATCGACCC	GGAAAGGGCAGGCCTGGAATGGAGTGGCAGGG
GGCTCCTCCGCCCACGCGGAGATCGACCC	CACGATCAACGGGCAGCTTTTCCCGCTCCACC
GGCTCCTCCGCCCACGCGGAGATCGACCC	GATCGATGTGATAATCGCAACCACCCAACAGG
GGCTCCTCCGCCCACGCGGAGATCGACCC	GCAGCCAAGTCGTTGGAAGCACCCGCATCTCA
GGCTCCTCCGCCCACGCGGAGATCGACCC	TCAAAACAGCTTTCTACCGGGCCGGTCGCGAC
GGCTCCTCCGCCCACGCGGAGATCGACCC	ATCCCCACGCGCAAATGTAATCCCGGCGATAT
GGCTCCTCCGCCCACGCGGAGATCGACCC	GCCTGCGGAGCTAGAAGCGCTCAACAAGGGTG
GGCTCCTCCGTCTAAGCGGAGATGACGCG

>NZ_LN829118|2|1|2301730-2303466|CRT
GGCTCCTCCGCCCACGCGGAGATCGACCC	TCAAAACAGCTTTCTACCGGGCCGGGTCGCTA
GGCTCCTCCGCCCACGCGGAGATCGACCC	CCGGCGTCGTCAAGCTTGACATTGACCGGATC
GGCTCCTCCGCCCACGCGGAGATCGACCC	GGAAAAGGGTTGGTGCCGGTCTTGTCTTCATC
GGCTCCTCCGCCCACGCGGAGATCGACCC	CACGGACGCGCTATCTCAGCCACTACGAGGAA
GGCTCCTCCGCCCACGCGGAGATCGACCC	CCCGCCCGAATAGTCTTGCCAGCCGGTACCCC
GGCTCCTCCGCCCACGCGGAGATCGACCC	GAGCATCCGAACTGGAAAGTCGTAGGCGGTTG
GGCTCCTCCGCCCACGCGGAGATCGACCC	GTCCTTACGTCATGAGAACGCAGCGGCAACAA
GGCTCCTCCGCCCACGCGGAGATCGACCC	CTTCGCCGCCATTCTCTCGACAGGCCCGCAGC
GGCTCCTCCGCCCACGCGGAGATCGACCC	CTACCCCAGTTCAGGAGGCTCTAGGAGGCATC
GGCTCCTCCGCCCACGCGGAGATCGACCC	GCCGACACTTTGTCTGCGGTGATGTCTTTCAG
GGCTCCTCCGCCCACGCGGAGATCGACCC	GGCACCGCTGCAACCTCCATTCCTCAAGGCAC
GGCTCCTCCGCCCACGCGGAGATCGACCC	AATCCTATTCCCAACGCACTCCTTTACTGTTC
GGCTCCTCCGCCCACGCGGAGATCGACCG	GGACAGTAGCTCCGGCTGGGTGGCTGCTTTGT
GGCTCCTCCGCCCACGCGGAGATCGACCC	CTCCCGTAACACCTCCAGCGATTGCATTGGCG
GGCTCCTCCGCCCACGCGGAGATCGACCC	TGTCATTACCCCGTTGCCCTCTTTCTAGCCCT
GGCTCCTCCGCCCACGCGGAGATCGACCT	GCGAGTGAGCGCTTCCACAAGTGCGTGGTGGC
GGCTCCTCCGCCCACGCGGAGATCGACCC	TTGAATGTCTTCCTGAATATGGGCTGCCACCC
GGCTCCTCCGCCCACGCGGAGATCGACCC	TATGTCTCCATCAGCATTCCACTGCGCGAGGT
GGCTCCTCCGCCCACGCGGAGATCGACCC	CATTAGCCGAGACGTTTTCGCGAAATTTGACT
GGCTCCTCCGCCCACGCGGAGATCGACCC	AGAGTCGAAGCGCTCGCCCCGGTGTTTGCCGA
GGCTCCTCCGCCCACGCGGAGATCGACCC	TCTGGCTGTATTTCTGGGATCTGAGCTTCAGT
GGCTCCTCCGCCCACGCGGAGATCGACCC	GGAAAGGGCAGGCCTGGAATGGAGTGGCAGGG
GGCTCCTCCGCCCACGCGGAGATCGACCC	CACGATCAACGGGCAGCTTTTCCCGCTCCACC
GGCTCCTCCGCCCACGCGGAGATCGACCC	GATCGATGTGATAATCGCAACCACCCAACAGG
GGCTCCTCCGCCCACGCGGAGATCGACCC	GCAGCCAAGTCGTTGGAAGCACCCGCATCTCA
GGCTCCTCCGCCCACGCGGAGATCGACCC	TCAAAACAGCTTTCTACCGGGCCGGTCGCGAC
GGCTCCTCCGCCCACGCGGAGATCGACCC	ATCCCCACGCGCAAATGTAATCCCGGCGATAT
GGCTCCTCCGCCCACGCGGAGATCGACCC	GCCTGCGGAGCTAGAAGCGCTCAACAAGGGTG
GGCTCCTCCGTCTAAGCGGAGATGACGCG

>NZ_LN829118|2|2|2302767-2303405|PILER-CR
	CTCAAAACAGCTTTCTACCGGGCCGGGTCGCTA
GGCTCCTCCGCCCACGCGGAGATCGACC	CCCGGCGTCGTCAAGCTTGACATTGACCGGATC
GGCTCCTCCGCCCACGCGGAGATCGACC	CGGAAAAGGGTTGGTGCCGGTCTTGTCTTCATC
GGCTCCTCCGCCCACGCGGAGATCGACC	CCACGGACGCGCTATCTCAGCCACTACGAGGAA
GGCTCCTCCGCCCACGCGGAGATCGACC	CCCCGCCCGAATAGTCTTGCCAGCCGGTACCCC
GGCTCCTCCGCCCACGCGGAGATCGACC	CGAGCATCCGAACTGGAAAGTCGTAGGCGGTTG
GGCTCCTCCGCCCACGCGGAGATCGACC	CGTCCTTACGTCATGAGAACGCAGCGGCAACAA
GGCTCCTCCGCCCACGCGGAGATCGACC	CCTTCGCCGCCATTCTCTCGACAGGCCCGCAGC
GGCTCCTCCGCCCACGCGGAGATCGACC	CCTACCCCAGTTCAGGAGGCTCTAGGAGGCATC
GGCTCCTCCGCCCACGCGGAGATCGACC	CGCCGACACTTTGTCTGCGGTGATGTCTTTCAG
GGCTCCTCCGCCCACGCGGAGATCGACC	CGGCACCGCTGCAACCTCCATTCCTCAAGGCAC
GGCTCCTCCGCCCACGCGGAGATCGACC	CAATCCTATTCCCAACGCACTCCTTTACTGTTC
GGCTCCTCCGCCCACGCGGAGATCGACC	GGGACAGTAGCTCCGGCTGGGTGGCTGCTTTGT
GGCTCCTCCGCCCACGCGGAGATCGACC	CCTCCCGTAACACCTCCAGCGATTGCATTGGCG
GGCTCCTCCGCCCACGCGGAGATCGACC	CTGTCATTACCCCGTTGCCCTCTTTCTAGCCCT
GGCTCCTCCGCCCACGCGGAGATCGACCTGCGAGTGAGCGCTTCCACAAGTGCGTGGTGGCGGCTCCTCCGCCCACGCGGAGATCGACCCTTGAATGTCTTCCTGAATATGGGCTGCCACCCGGCTCCTCCGCCCACGCGGAGATCGACCC	TATGTCTCCATCAGCATTCCACTGCGCGAGGT
GGCTCCTCCGCCCACGCGGAGATCGACCC	CATTAGCCGAGACGTTTTCGCGAAATTTGACT
GGCTCCTCCGCCCACGCGGAGATCGACCC	AGAGTCGAAGCGCTCGCCCCGGTGTTTGCCGA
GGCTCCTCCGCCCACGCGGAGATCGACCC	TCTGGCTGTATTTCTGGGATCTGAGCTTCAGT
GGCTCCTCCGCCCACGCGGAGATCGACCC	GGAAAGGGCAGGCCTGGAATGGAGTGGCAGGG
GGCTCCTCCGCCCACGCGGAGATCGACCC	CACGATCAACGGGCAGCTTTTCCCGCTCCACC
GGCTCCTCCGCCCACGCGGAGATCGACCC	GATCGATGTGATAATCGCAACCACCCAACAGG
GGCTCCTCCGCCCACGCGGAGATCGACCC	GCAGCCAAGTCGTTGGAAGCACCCGCATCTCA
GGCTCCTCCGCCCACGCGGAGATCGACCC	TCAAAACAGCTTTCTACCGGGCCGGTCGCGAC
GGCTCCTCCGCCCACGCGGAGATCGACCC	ATCCCCACGCGCAAATGTAATCCCGGCGATAT
GGCTCCTCCGCCCACGCGGAGATCGACCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN829118.1\|WP_046478313.1\|2304944_2305298_-\|MobC-family-plasmid-mobilization-relaxosome-protein	unknown	unknown	gnl\|CDD\|368576
NZ_LN829118.1\|WP_046478314.1\|2305864_2306296_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN829118.1\|WP_052744021.1\|2290382_2292209_-\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|223715
NZ_LN829118.1\|WP_160298726.1\|2312968_2313139_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN829118.1\|WP_160298725.1\|2315231_2316359_-\|SRPBCC-domain-containing-protein	unknown	unknown	gnl\|CDD\|274926
NZ_LN829118.1\|WP_046478310.1\|2299569_2300406_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|215025
NZ_LN829118.1\|WP_046478309.1\|2298769_2299573_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
NZ_LN829118.1\|WP_046478315.1\|2306406_2306901_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN829118.1\|WP_046478316.1\|2306957_2307203_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_LN829118.1\|WP_046478311.1\|2301375_2301681_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|378244
NZ_LN829118.1\|WP_046478317.1\|2307519_2310915_+\|TM0106-family-RecB-like-putative-nuclease	unknown	unknown	gnl\|CDD\|274603
NZ_LN829118.1\|WP_046478312.1\|2303709_2304945_-\|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|367497
NZ_LN829118.1\|WP_052744018.1\|2310974_2312207_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271177
NZ_LN829118.1\|WP_160298727.1\|2296890_2297553_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0171_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_LN829118.1\|WP_046480287.1\|2313240_2315061_+\|methanol/ethanol-family-PQQ-dependent-dehydrogenase	unknown	unknown	gnl\|CDD\|199836
NZ_LN829118.1\|WP_076605316.1\|2292655_2295307_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_LN829118.1\|WP_046478308.1\|2297549_2298767_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_LN829118.1\|WP_046480281.1\|2289843_2290467_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_LN829118.1\|WP_082101180.1\|2300410_2301373_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|187850
NZ_LN829118.1\|WP_052744022.1\|2289200_2289782_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107

Protein	Function_ID	Function_description	E-value
NZ_LN829118.1\|WP_046478313.1\|2304944_2305298_-\|MobC-family-plasmid-mobilization-relaxosome-protein	gnl\|CDD\|368576	pfam05713, MobC, Bacterial mobilisation protein (MobC). This family consists of several bacterial MobC-like, mobilisation proteins. MobC proteins belong to the group of relaxases. Together with MobA and MobB they bind to a single cis-active site of a mobilising plasmid, the origin of transfer (oriT) region. The absence of MobC has several different effects on oriT DNA. Site- and strand-specific nicking by MobA protein is severely reduced, accounting for the lower frequency of mobilisation. The localized DNA strand separation required for this nicking is less affected, but becomes more sensitive to the level of active DNA gyrase in the cell. In addition, strand separation is not efficiently extended through the region containing the nick site. These effects suggest a model in which MobC acts as a molecular wedge for the relaxosome-induced melting of oriT DNA. The effect of MobC on strand separation may be partially complemented by the helical distortion induced by supercoiling. However, MobC extends the melted region through the nick site, thus providing the single-stranded substrate required for cleavage by MobA.	3.87845e-08
NZ_LN829118.1\|WP_052744021.1\|2290382_2292209_-\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	8.96446e-42
NZ_LN829118.1\|WP_160298725.1\|2315231_2316359_-\|SRPBCC-domain-containing-protein	gnl\|CDD\|274926	TIGR04025, hypothetical_protein, PPOX class probable FMN-dependent enzyme, DR_2398 family. Members of the PPOX family (see pfam01243) may contain either FMN or F420 as cofactor. This subfamily consists of proteins mostly from species that lack the capability to synthesize F420, and therefore most likely all bind FMN.	5.55614e-24
NZ_LN829118.1\|WP_046478310.1\|2299569_2300406_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	6.92678e-24
NZ_LN829118.1\|WP_046478309.1\|2298769_2299573_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	2.5605e-46
NZ_LN829118.1\|WP_052744018.1\|2310974_2312207_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	7.62607e-39
NZ_LN829118.1\|WP_046478316.1\|2306957_2307203_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	5.0345e-06
NZ_LN829118.1\|WP_046478311.1\|2301375_2301681_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	6.62041e-27
NZ_LN829118.1\|WP_046478317.1\|2307519_2310915_+\|TM0106-family-RecB-like-putative-nuclease	gnl\|CDD\|274603	TIGR03491, TIGR03491, RecB family nuclease, putative, TM0106 family. Members of this uncharacterized protein family are found broadly but sporadically among bacteria. The N-terminal region is homologous to the Cas4 protein of CRISPR systems, although this protein family shows no signs of association with CRISPR repeats.	3.78304e-74
NZ_LN829118.1\|WP_046478312.1\|2303709_2304945_-\|relaxase/mobilization-nuclease-domain-containing-protein	gnl\|CDD\|367497	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalyzing trans-esterification.	3.44725e-13
NZ_LN829118.1\|WP_160298727.1\|2296890_2297553_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	5.79528e-08
NZ_LN829118.1\|WP_046480287.1\|2313240_2315061_+\|methanol/ethanol-family-PQQ-dependent-dehydrogenase	gnl\|CDD\|199836	cd10278, PQQ_MDH, Large subunit of methanol dehydrogenase (moxF). Methanol dehydrogenase is a key enzyme in the utilization of C1 compounds as a source of energy and carbon by bacteria. It catalyzes the oxidation of methanol to formaldehyde, transfering two electrons per methanol to cytochrome c(L) as the acceptor. Methanol dehydrogenase belongs to a family of dehydrogenases with pyrroloquinoline quinone (PQQ) as cofactor, which also includes dehydrogenases specific to other alcohols and membrane-bound glucose dehydrogenases. This alignment model for the large subunit contains an 8-bladed beta-propeller; the functional enzyme forms a heterotetramer composed of two large and two small subunits.	0
NZ_LN829118.1\|WP_076605316.1\|2292655_2295307_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.07246e-91
NZ_LN829118.1\|WP_046478308.1\|2297549_2298767_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	2.38412e-103
NZ_LN829118.1\|WP_046480281.1\|2289843_2290467_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	4.87683e-52
NZ_LN829118.1\|WP_082101180.1\|2300410_2301373_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187850	cd09719, Cas1_I-E, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.67982e-109
NZ_LN829118.1\|WP_052744022.1\|2289200_2289782_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	8.76468e-37

>NZ_LN829118.1|WP_046478311.1|2301375_2301681_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MPLCIVVTRDVEMRYRGFLGSIMLEASPGVYVGPHLTKGVRERAWSVLEDWHASLQSGSIVMIWRDTSAPGGLQIKTLGEPPKDIIEHEGALLVRRPFRAT
>NZ_LN829118.1|WP_082101180.1|2300410_2301373_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MLLGRLGLEKARIPHADRHGCVFLERGRLEVEDGCLRFVCAGGGALDAGDYQLPHQSVSIILLGPGSSVTHDALRILSAHGCALAAIGQGGVRFYTAPPLLPDSSALARRQVTFWADPKERVAVARQMYTIRFGEEVKARTIEMLRGMEGARLKRLYELTAQRYGVPWKGRRYDRANPNATDIANQAINHAASAVEAAAAIAVASTATIPQIGFVHEDSGQSFILDIADLVRHDVTLPIAFGAAKQALQERDENLERLVRRRAAETFNKDQTVARLINHIKAILAPPLSGDISRPEPASEPKPVTEPSKGSPPDPERREA
>NZ_LN829118.1|WP_046478310.1|2299569_2300406_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MSSPLHFARVPIRLSALARYAGDRDWIPRKRRDGREADAGFDPGRALHHVLDETFGPNALKPFRLMVPRHKDLGTIYAYTAWPKDELLAIAAETAVPEFAADHILRLVDLDTKPMPETWTEGKRLAFDVRVRPVSRIRTELPNPNPKRPAYKPGSEVDVFLLEAQRNHPDGRTRLVDGTPTASGMMIAGRDRPTVYRDWLAARLDGAAEVDHEHTDLTAFQRSRVSRGGASVEGPDATFHGELSVTDPERFHALLARGIGRHLSFGFGMLLLRPPRRR
>NZ_LN829118.1|WP_046478309.1|2298769_2299573_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSPARRWLVLRLEAPLLSFGAVAIDNYGVTWDFPALSMLTGLFANALGYERIECEAHQALQDRIVFASRREDEPYHGVLTDVQNVHMQKSDKGWTTRGTPEGRDGGSYGGPHRRFRDYHPDALVAVVLTLHLPPDHALPAGRHHPTLDDLAAALDRPERPLFIGRKPCLPAWPLNAGLIEAETAHDALLKLPALMDLSKREPRKTGDLRAQWPAGDGPDQGAGVDRGLAIHDRRNWISGLHGGTRRVIEGRLAPPAPPPTADGEVAI
>NZ_LN829118.1|WP_046478308.1|2297549_2298767_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTSRFLQIHTLHSYSAALLNLDDSGLAKRIKYGGAMRTRVSSQCLKRHWRLADDPHALLKIAGAEDAFRSRELVTLKVLEPLSASYKPLTLAVLNDTFQKHVYGDKGTDKKSRQTLLLGAPELRWLAKEADSLAPQIEAALSAPNSDATDKKAVAQALKDADGILKPWVSDKKNNLSTLREQNALNAGLPAALFGRMVTSDPAANIEAPIHVAHAFTVHEEETESDYFTAVDDLKRDEDDSGADTIQETELMSGLFYGYAVVDVPGLVSNLTGCERPEWTSADRTMAAEVVHNLIYLIAEVSPGAKLGSTAPYGRAEMVLVEAGDRQPRSLSAAFRTPVRADLYAALKASAEHLATMDRLYETGEARRTLHPMNEDVFRSAPRGSLREIAEWAKAAVLNGEATR
>NZ_LN829118.1|WP_160298727.1|2296890_2297553_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MTRRWPMQPEAQESRSKTGDTIFAFGRTLADLDPGALADMRRMSLDGNAHGAPYFWRLASRHGFGTGDRLATWARIVQIMAILTDKGQPEGKRSPHAPATKDNGWRGLGQALCDGADLNWPGELPPGSKPRPMLSELRFARLLAARGPMRAELMERAARALAAKKPPGAQVNCTDLAYFLLDPDNPAHARKLARDYYARLDRAGRNDDQSNKVDATGDAA
>NZ_LN829118.1|WP_076605316.1|2292655_2295307_+|CRISPR-associated-helicase/endonuclease-Cas3
MTRAPWGKFDASAGTRHHLAHHCADVAAIFRRLVMLPAFSARLEQAAGDAITDIQLERLTALVFLHDAGKLHPGFQARGWPGESWGVNPHGHVHEGLEIFLANDGVANLPLARSLHIDSLVGWGIAESLLRAVISHHGRPARNQVRNLSDAKQCWRSRGPYDLEAVGQEMGRIMCQWFPAAFEHGGTELPCDNGQFEHLICGLTTLADWLGSSAQWFPHMAQLDGTYIETAQKGAERACIAVGLDALRQRNARNSAICFSDLTGFSSPNPQQALVGEIDLNARAVILEAETGSGKTEAALWHYVRLFEAGRVDGLYFAVPTRAAAVQLHARIVNAAKRVFGKDTPQPVLAVPGYIKAGDVEGTALPHWRVLWDDAARGEPEKQHARWAAEHSKRYLAAQIAVGTVDQVMMGALTVKHAHLRAASLSRSLLVIDEVHASDAYMTSVQKALLDSHVAVGGYAMLMSATLGSTARAKWLGHSAPDFAAACAIPYPALWTSETDTAQSPEAPPYNSKHVAMETLVTMAAEATAERALTAARRGARVLVIRNTVDRAIETLSALEALAEPVDHGLLFRVGNVSTLHHSRFAPTDRKLLDQAVEAALNTDKHRAPEGRIVIGTQTLEQSLDIDSDLLITDLCPIDVLLQRIGRLHRHKLARPAGFEEPRCIVMVPEGGLALLLKPAFENGLGAWRAAGGLQGVYRDLSVLELTRRLVEGDPVWTIPEMNRPLVESALHPQQIKALHEELGPAWSAYRDDVVGSELGDRLAASGVLIDRTKPFEKCAFPDGAEQKIRTRLGEDNVRLLLAEQVPVGPFGEPVTELVLPGRWCREISGEDAPLEHSKNCNAIVLSIGDAAFRYDRYGLARQRDGDNGSQSADGIADPVRDD
>NZ_LN829118.1|WP_052744021.1|2290382_2292209_-|hybrid-sensor-histidine-kinase/response-regulator
MGVSNSPDNQDNGQSDWQLDYLFSIGRASWIVHLSVCALTFVVLIRRDVGSWSLVWISAMAALSLALAGLSHTYAKGWFPRVPRSAFGKAHSAITAAIGLVWGAGAFASAAQGELDLSVLYALALGGTALGAVSSQHALPRSCLLSIWTSVPQLAASFLVYAQNPSMFAIATMVLLYGVTLTILMHRMFDFLSDNVAISRDLSRKNAKLFATSAQLKEAHDAKLRFLAQASHDLRQPIHAIGLFVECLRGMRLGTDASEILASVNQSVSSLSRLCRSLLDLSAIEAGQVKPEPVDFALNDILGEVVRQSQESARKSSAELRFVSTRHWVHADPALLQAMVQNLVSNAIKYAPNAKLLVGVKRRQGKLALAVVDQGSGIPEERCEKIFAEFERLDVHRGGPIEGLGLGLSIVRRLGHLMDLTVRVQSRVGHGTTFWIEELMPIASRKVAAVKLARDHHRVLEGLRVLVIDDDRAVRKSTAQVLARWGCSSRATGRIDSLRAEVDSTDFILCDQDLGGSTTGLDLVTRLRAATPKIIGAAIMTGSDSEQLRADAARAGIVVLAKPVNPSQLRSLLLSAVSGKYYNSPSSAATRAAADRVETSSERNTADT
>NZ_LN829118.1|WP_046480281.1|2289843_2290467_+|response-regulator-transcription-factor
MSDRILIADDHPVFREGMRRIVQRAVPSAHIIEVGTTAELLREAGNGPPPFLMLLDLCFPGFEGEDSIRTLRSDFPTTSLVVVSMSDDSETVDGVMKAGADGFISKAVSGQDMAAAVSDALAGDIIVRIESTISANGPLPSDVLARLSDRQREVLRLIGTGLSNKEIGRELNISPYTVRIHVSAVLRSLEVSTRSAAARVAAELGLL
>NZ_LN829118.1|WP_052744022.1|2289200_2289782_+|response-regulator-transcription-factor
MSLRKIVIADGIPLFRDGLRRLVLRYVTDAFVLEADDFDSMLRVASENHPALFVLDLLLCGHEYCAAISRLRQHCPDSAILVIAADTQKAQIKAIIEHGADGCVARSVKPEVMVEVLTATLGDEPVGRVELSELSPRQRQILEQLALGRTNKEIALALGISHYTVRVHISSLFRLLGVNSRTAAVAAASGLRL
>NZ_LN829118.1|WP_046478312.1|2303709_2304945_-|relaxase/mobilization-nuclease-domain-containing-protein
MLAKVAPTSSDFRALARYLLNGKGGQPHPDRVRWFFAQNLGTDDPLLAARYMEATASRSARCAKPVYHLMVAWHERERPSGEIMQDIARRTLDLAGLSEHQALIMGHGDTSHRHFHIMLNRVHPETRKAWKTTNDFARFDQIMRQLSEEHGFEYIPAHSFDPELTDELPQLPDSKSFRAAGKGANTARTKWSKRASREFGDYLSTNLDHATTIEDLNLLAAEHGLAFEPKGKGMVLGNVQGYATLSSLGLALSANGMVRRREALPDIVLTSPLRRPWFDVDAVDITRALMGWGLATKHDLTETINDMRTERAAKAAARKVPPILPALSIPAVPHTRTALSTARTGLGRPQKPHSRPPRNAIKDHLDSLIRAQTDRAVIDRHRRLISQQRKRMSWTYVNLTNASDTASRGRA
>NZ_LN829118.1|WP_046478313.1|2304944_2305298_-|MobC-family-plasmid-mobilization-relaxosome-protein
MPRRCSKRADKEEKVVKPRFLKARLSEDDHRQMHRIAAERGIKISRLTRTILQAHLKGIPVRLPHPHGITDELVHQLARIGNNLNQLAHQANIGYVAVPMQEIRSCIDAINQKVAQL
>NZ_LN829118.1|WP_046478314.1|2305864_2306296_-|hypothetical-protein
MIITHTVNHQGKHRVYLGGNFSLKAWLEQKDDTPAWTFAFDASEAPAHMSDPDAMRQWAYGLLSELAKALHVQLRDLMTVPFDVIAKLHTTSALHDKRIPSPQREVIETGYMPTLPGLKRTKADFTASDFKAYHDKGRSRGKR
>NZ_LN829118.1|WP_046478315.1|2306406_2306901_-|hypothetical-protein
MAPPDLTELQAACTAAHDEYRTARKTLANAIGKDERSEDMRDMIASTIDIGLNATLHRLKTDDPKIVEAIERLSEASHHLGLAINAREEAQIEKNLNHHRVYVDDGREFTLDLKTGTWTYLDAPDRPIKLSFVKSDKLPFALPGFEPKMDPPKPTKSRKRSPRM
>NZ_LN829118.1|WP_046478316.1|2306957_2307203_+|helix-turn-helix-domain-containing-protein
MQTQEQWPVADIPERKTLLQTAQAAAYLHISPRTLEDYRIKGGGPVFIRLGLGKRSPVLYDLADLNAWLDSRKVAATFEES
>NZ_LN829118.1|WP_046478317.1|2307519_2310915_+|TM0106-family-RecB-like-putative-nuclease
MKKRGGKFELSATDLVGHLNCRHLTSLDRSVAEGTLAKPKVWDPLLMVLAERGTKHEQSYIDHLEASGIEVVRIDGVDVYDKAVTETLDAMRAGAQVIAQGALSDDGWIGRADILRRVDDRPSNLGDWSYEVIDTKLARETKAGAVLQLALYSDLLTQAQGVAPEYMYVVAPWSDFEPRRYRFADSAAYFRKVKRGLIDDLAAKETAKTYPDPKEYCDICRWRESCDKRRRDDDHLCLVAGISKVQINELKRREVSTVEQLATMPLPLSWKPDRGSADSYERIREQARIQVEARQSGERKFELLPVLEGLGLTRLPEPSPGDIFFDLEGDPFVGEHGLEYLFGYVFEEDGSFLYVGDWAFTREDEKKVFERFVDFVMARWETYPDLHIYHYAPYEPAAMKRLMGRYATREEEIDRMLRAGLFVDLYQVVRHTVRASVESYSIKQMEPFFSFVREKDLADAGTALAAMQTGLELDDTASISEETKEAVLAYNKDDCLAAEGLRNWLEELRNQVVARGTDVPRPEAGDGSPNERITTWILKINAIIDRLTGDIPVDPDERNDEQQARWILANILDWHRREEKALWWELFRLSDLSAEDLLDERAGLSGLSYVGNAGGTNTAPIHRYSFPPQETDLRGDEELRSQGGEKFGTVAAISFDDRTIDIKKRKDSAGINPVAIFAHKVIDTQPMKDALVRLGEYVADNGIEGDGPYQAARDLLLRIAPRTGGEPLHYEGEAASATAVRLCSHLEGGVLPIQGPPGAGKTYSGARMICELVRQGKTVGITANSHKVIRNLIDGTIEAADDLGIGVQCCHKADKVGQPQHRLTFAKRSEDLINALGGNVNVGGGTAWLWARQDAFEILDVLFVDEAAQMSLANVLAVSQAAKTVVLLGDPQQLDQPMQGTHPEGTDVSALTHILGDAHTVPADRGLFLEQTWRLHPDICAFTSELFYDDKLTSKPGLRAQVIESDGAISGSGLRYVPVHHTGNQNCSPEEAEEVSKLVNQILAGNATWIDRDGNEHGLTLDDIVIITPYNAQVFEIQQRLPGARVGTVDKFQGQEAPIAIYSMATSSHADAPRGMEFLYSLNRLNVATSRAKCISIIVSSAQLFEAECRTPRQIQLVNAFCRYVELVKNL
>NZ_LN829118.1|WP_052744018.1|2310974_2312207_-|tyrosine-type-recombinase/integrase
MNIIKSITQTTIKALGPGDTIRDTNLRGFGARRRKNTITFFVKTRYRGSQRWITIGSHPAWSADKARQRASDILRNVDKHFQRTVASPATADPYLTFKEAFDRFAVAHGPFIKPRTLKEYTRIANRVIVPYFKDKPLKDFKRADCSAFHQSLIMVPSAANHARALISLVFNWAIIEELIPEALNPTRGVRKYKEISRAQFLSQDDLKRLAKAMHEALLRNEASRIQVATILLLLFTGARRSEIFTLKRNYVDRHRMIAHLPDSKTGKKVLHLGPFAMSILDAIPEVDGNPYYMVGRKAGSCISEIKKPWDKIRKRAGLEGFRLHDFRHSFASFAGDQGASARAVGALLGHASIETTKLYLHIFNQRAKETSRQTGQAIDNILSGALILQTSPPPSGNQATHSDPQDHTER
>NZ_LN829118.1|WP_160298726.1|2312968_2313139_+|hypothetical-protein
MVRFCRVSAVLNYRFGIRLGGQEEVERHHYSFGLRLADIGKALMPLRSSVIAQPNG
>NZ_LN829118.1|WP_046480287.1|2313240_2315061_+|methanol/ethanol-family-PQQ-dependent-dehydrogenase
MAKGQLGLALTLVSMFATTAIANDDVAKNTSDPKQWAMQSGDYYNQRYSKLDQINTTNVKDLKVAWTFSTGVLRGHEGSPLVIDNVMYVHTPFPNNVYALDLNSEGKILWSYAPKQDPAVVAIMCCDTVNRGVAYADGTIFLHQADTAVVALDAKTGKEIWKAVNGDPKKGESGTAAPLVVKNAVIVGNSGAEFGVRGHLTAYDIKNGKRLWRAYATGPDDEILFDPERTTSLGKPVGRDSSLKTWNGDQWKIGGGTAWGWFSYDPELNLIYYGTANPSTWNPAQRAGPDGKPIDQKWTMAIIARNPETGVAAWAYQMTPFDEWDYDGVNEMILADIPVNGEVVPALVHFDRNGLAYTINRKTGIPLVAEKFDPVVNWTSGVDLDPKSSTYGRPKVVAKYSTFQNGEDVNVKGICPAALGTKDQQPAAFSPKSGLFYVPTNHVCMDYEPFRVSYTAGQPYVGATVSMYTAPNSHGGMGNFIAWDAGKGEIKWSVPEQFSVWSGALATAGDVVFYGTLEGYLKAVSAVDGKELFKFKTASGIVGNVFTYEHKGNQFVGVYSGVGGWAGIGLAAGLTNPNDGLGAVGGYAGLKQYTNLGGSLTVFSLP
>NZ_LN829118.1|WP_160298725.1|2315231_2316359_-|SRPBCC-domain-containing-protein
MRTSARNRQKNVAVTLVRKIQSSSEAVFAAWTEPRLIAQWLAPGADSVTAVTADLRPGGQYRIDGLHGDGSAYSITGTYIEIIENKRVSITWTYDGPVSALRGATSLVIADLRRRSSDVTELTLSHEKLADREAAELYRINWSRCLEKLEPTSRLHLPIDQQEADNPSREFFTDEHRRLQDRNGTRKLADRLQALTVKHELNVVDAVFIARQNMFFLATTDADGQPSCSYKGGARGFVNIIDNKTLAFPDFDGNGMLISVGNISENGRVGLLFVDFEKQARLRVNGRAQIFTENDKLFSRYPGARSIVRIAIDAVFPNCPRYIHKMALVAESPFVPDGKHPVPRTDWKYLAAFSDVVSEDEAGVETDLDKALSRD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LN829118_1	1.5\|577081\|25\|NZ_LN829118\|CRISPRCasFinder	577081-577105	25	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	1016634-1016658	4	0.84
NZ_LN829118_2	2.38\|2303101\|32\|NZ_LN829118\|CRISPRCasFinder,CRT,PILER-CR	2303101-2303132	32	NZ_CP021373	Rhizobium sp. ACO-34A plasmid pRACO34Ac, complete sequence	214275-214306	6	0.812
NZ_LN829118_2	2.14\|2302551\|33\|NZ_LN829118\|PILER-CR	2302551-2302583	33	NZ_CP045296	Paenibacillus cellulositrophicus strain KACC 16577 plasmid unnamed1, complete sequence	238296-238328	7	0.788
NZ_LN829118_2	2.18\|2301881\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2301881-2301912	32	MF979563	Pectobacterium phage DU_PP_IV, complete genome	100981-101012	7	0.781
NZ_LN829118_2	2.18\|2301881\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2301881-2301912	32	MF979560	Pectobacterium phage DU_PP_I, complete genome	100671-100702	7	0.781
NZ_LN829118_2	2.18\|2301881\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2301881-2301912	32	KC954774	Cronobacter phage CR8, complete genome	109965-109996	7	0.781
NZ_LN829118_2	2.18\|2301881\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2301881-2301912	32	NC_028672	Cronobacter phage PBES 02, complete genome	14775-14806	7	0.781
NZ_LN829118_2	2.18\|2301881\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2301881-2301912	32	NC_017974	Cronobacter phage CR3, complete genome	109191-109222	7	0.781
NZ_LN829118_2	2.19\|2301942\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2301942-2301973	32	NZ_CP040452	Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence	1649404-1649435	7	0.781
NZ_LN829118_2	2.29\|2302552\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2302552-2302583	32	NZ_CP045296	Paenibacillus cellulositrophicus strain KACC 16577 plasmid unnamed1, complete sequence	238297-238328	7	0.781
NZ_LN829118_2	2.33\|2302796\|32\|NZ_LN829118\|CRISPRCasFinder,CRT,PILER-CR	2302796-2302827	32	MK359302	Gordonia phage Sombrero, complete genome	13783-13814	7	0.781
NZ_LN829118_2	2.38\|2303101\|32\|NZ_LN829118\|CRISPRCasFinder,CRT,PILER-CR	2303101-2303132	32	NZ_CP015038	Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence	53149-53180	7	0.781
NZ_LN829118_2	2.38\|2303101\|32\|NZ_LN829118\|CRISPRCasFinder,CRT,PILER-CR	2303101-2303132	32	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	62352-62383	7	0.781
NZ_LN829118_2	2.38\|2303101\|32\|NZ_LN829118\|CRISPRCasFinder,CRT,PILER-CR	2303101-2303132	32	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	71507-71538	7	0.781
NZ_LN829118_2	2.38\|2303101\|32\|NZ_LN829118\|CRISPRCasFinder,CRT,PILER-CR	2303101-2303132	32	NZ_AP023209	Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence	54352-54383	7	0.781
NZ_LN829118_2	2.38\|2303101\|32\|NZ_LN829118\|CRISPRCasFinder,CRT,PILER-CR	2303101-2303132	32	NZ_CP024940	Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence	401327-401358	7	0.781
NZ_LN829118_2	2.38\|2303101\|32\|NZ_LN829118\|CRISPRCasFinder,CRT,PILER-CR	2303101-2303132	32	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	63683-63714	7	0.781
NZ_LN829118_2	2.38\|2303101\|32\|NZ_LN829118\|CRISPRCasFinder,CRT,PILER-CR	2303101-2303132	32	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	44635-44666	7	0.781
NZ_LN829118_2	2.3\|2301880\|33\|NZ_LN829118\|PILER-CR	2301880-2301912	33	MF979563	Pectobacterium phage DU_PP_IV, complete genome	100981-101013	8	0.758
NZ_LN829118_2	2.3\|2301880\|33\|NZ_LN829118\|PILER-CR	2301880-2301912	33	MF979560	Pectobacterium phage DU_PP_I, complete genome	100671-100703	8	0.758
NZ_LN829118_2	2.3\|2301880\|33\|NZ_LN829118\|PILER-CR	2301880-2301912	33	KC954774	Cronobacter phage CR8, complete genome	109965-109997	8	0.758
NZ_LN829118_2	2.3\|2301880\|33\|NZ_LN829118\|PILER-CR	2301880-2301912	33	NC_028672	Cronobacter phage PBES 02, complete genome	14775-14807	8	0.758
NZ_LN829118_2	2.3\|2301880\|33\|NZ_LN829118\|PILER-CR	2301880-2301912	33	NC_017974	Cronobacter phage CR3, complete genome	109191-109223	8	0.758
NZ_LN829118_2	2.17\|2301820\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2301820-2301851	32	NZ_CP041206	Rhizobium sp. NIBRBAC000502774 plasmid pMK-3, complete sequence	92756-92787	8	0.75
NZ_LN829118_2	2.38\|2303101\|32\|NZ_LN829118\|CRISPRCasFinder,CRT,PILER-CR	2303101-2303132	32	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	1000137-1000168	8	0.75
NZ_LN829118_2	2.38\|2303101\|32\|NZ_LN829118\|CRISPRCasFinder,CRT,PILER-CR	2303101-2303132	32	NZ_CP044082	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence	214777-214808	8	0.75
NZ_LN829118_2	2.38\|2303101\|32\|NZ_LN829118\|CRISPRCasFinder,CRT,PILER-CR	2303101-2303132	32	NZ_CP031080	Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence	106410-106441	8	0.75
NZ_LN829118_2	2.17\|2301820\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2301820-2301851	32	MK977696	Gordonia phage SCentae, complete genome	98900-98931	9	0.719
NZ_LN829118_2	2.17\|2301820\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2301820-2301851	32	MK977695	Gordonia phage Pupper, complete genome	98749-98780	9	0.719
NZ_LN829118_2	2.18\|2301881\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2301881-2301912	32	NZ_CP050098	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence	320009-320040	9	0.719
NZ_LN829118_2	2.18\|2301881\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2301881-2301912	32	NZ_CP025013	Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence	364258-364289	9	0.719
NZ_LN829118_2	2.18\|2301881\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2301881-2301912	32	NZ_CP053440	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence	325528-325559	9	0.719
NZ_LN829118_2	2.18\|2301881\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2301881-2301912	32	NZ_CP018229	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence	746608-746639	9	0.719
NZ_LN829118_2	2.18\|2301881\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2301881-2301912	32	NZ_CP016287	Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence	156069-156100	9	0.719
NZ_LN829118_2	2.22\|2302125\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2302125-2302156	32	NZ_CP014052	Vibrio alginolyticus strain FDAARGOS_108 plasmid unnamed1, complete sequence	19725-19756	9	0.719
NZ_LN829118_2	2.22\|2302125\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2302125-2302156	32	NZ_KP688397	Vibrio parahaemolyticus strain V36 plasmid pVPH1, complete sequence	41201-41232	9	0.719
NZ_LN829118_2	2.22\|2302125\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2302125-2302156	32	NZ_KP791968	Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence	92769-92800	9	0.719
NZ_LN829118_2	2.22\|2302125\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2302125-2302156	32	NZ_CP025539	Vibrio harveyi strain 345 plasmid p345-185, complete sequence	109710-109741	9	0.719
NZ_LN829118_2	2.22\|2302125\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2302125-2302156	32	MN865127	Vibrio alginolyticus strain C1579 plasmid pC1579, complete sequence	57775-57806	9	0.719
NZ_LN829118_2	2.22\|2302125\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2302125-2302156	32	NC_025127	Vibrio sp. 04Ya090 plasmid pAQU2 DNA, complete sequence	44833-44864	9	0.719
NZ_LN829118_2	2.22\|2302125\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2302125-2302156	32	NC_016983	Photobacterium damselae subsp. damselae plasmid pAQU1, complete sequence	53190-53221	9	0.719
NZ_LN829118_2	2.22\|2302125\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2302125-2302156	32	NZ_CP034301	Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-2, complete sequence	165826-165857	9	0.719
NZ_LN829118_2	2.22\|2302125\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2302125-2302156	32	KX957970	Vibrio parahaemolyticus plasmid pVPS43, complete sequence	4797-4828	9	0.719
NZ_LN829118_2	2.22\|2302125\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2302125-2302156	32	KX957971	Vibrio parahaemolyticus plasmid pVPS62, complete sequence	4797-4828	9	0.719
NZ_LN829118_2	2.22\|2302125\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2302125-2302156	32	KX957972	Vibrio parahaemolyticus plasmid pVPS91, complete sequence	4797-4828	9	0.719
NZ_LN829118_2	2.22\|2302125\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2302125-2302156	32	KX957968	Vibrio alginolyticus plasmid pVAS19, complete sequence	4797-4828	9	0.719
NZ_LN829118_2	2.22\|2302125\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2302125-2302156	32	KX957969	Vibrio alginolyticus plasmid pVAS114, complete sequence	4797-4828	9	0.719
NZ_LN829118_2	2.24\|2302247\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2302247-2302278	32	NZ_CP014308	Burkholderia sp. PAMC 26561 plasmid unnamed1, complete sequence	275649-275680	9	0.719
NZ_LN829118_2	2.24\|2302247\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2302247-2302278	32	NZ_CP014309	Burkholderia sp. PAMC 26561 plasmid unnamed2, complete sequence	559454-559485	9	0.719
NZ_LN829118_2	2.7\|2302124\|33\|NZ_LN829118\|PILER-CR	2302124-2302156	33	NZ_CP014052	Vibrio alginolyticus strain FDAARGOS_108 plasmid unnamed1, complete sequence	19725-19757	10	0.697
NZ_LN829118_2	2.7\|2302124\|33\|NZ_LN829118\|PILER-CR	2302124-2302156	33	NZ_KP791968	Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence	92769-92801	10	0.697
NZ_LN829118_2	2.7\|2302124\|33\|NZ_LN829118\|PILER-CR	2302124-2302156	33	NZ_CP034301	Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-2, complete sequence	165826-165858	10	0.697
NZ_LN829118_2	2.7\|2302124\|33\|NZ_LN829118\|PILER-CR	2302124-2302156	33	NZ_KP688397	Vibrio parahaemolyticus strain V36 plasmid pVPH1, complete sequence	41200-41232	10	0.697
NZ_LN829118_2	2.7\|2302124\|33\|NZ_LN829118\|PILER-CR	2302124-2302156	33	NZ_CP025539	Vibrio harveyi strain 345 plasmid p345-185, complete sequence	109709-109741	10	0.697
NZ_LN829118_2	2.7\|2302124\|33\|NZ_LN829118\|PILER-CR	2302124-2302156	33	MN865127	Vibrio alginolyticus strain C1579 plasmid pC1579, complete sequence	57774-57806	10	0.697
NZ_LN829118_2	2.7\|2302124\|33\|NZ_LN829118\|PILER-CR	2302124-2302156	33	NC_025127	Vibrio sp. 04Ya090 plasmid pAQU2 DNA, complete sequence	44832-44864	10	0.697
NZ_LN829118_2	2.7\|2302124\|33\|NZ_LN829118\|PILER-CR	2302124-2302156	33	NC_016983	Photobacterium damselae subsp. damselae plasmid pAQU1, complete sequence	53189-53221	10	0.697
NZ_LN829118_2	2.7\|2302124\|33\|NZ_LN829118\|PILER-CR	2302124-2302156	33	KX957970	Vibrio parahaemolyticus plasmid pVPS43, complete sequence	4796-4828	10	0.697
NZ_LN829118_2	2.7\|2302124\|33\|NZ_LN829118\|PILER-CR	2302124-2302156	33	KX957971	Vibrio parahaemolyticus plasmid pVPS62, complete sequence	4796-4828	10	0.697
NZ_LN829118_2	2.7\|2302124\|33\|NZ_LN829118\|PILER-CR	2302124-2302156	33	KX957972	Vibrio parahaemolyticus plasmid pVPS91, complete sequence	4796-4828	10	0.697
NZ_LN829118_2	2.7\|2302124\|33\|NZ_LN829118\|PILER-CR	2302124-2302156	33	KX957968	Vibrio alginolyticus plasmid pVAS19, complete sequence	4796-4828	10	0.697
NZ_LN829118_2	2.7\|2302124\|33\|NZ_LN829118\|PILER-CR	2302124-2302156	33	KX957969	Vibrio alginolyticus plasmid pVAS114, complete sequence	4796-4828	10	0.697
NZ_LN829118_2	2.18\|2301881\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2301881-2301912	32	NZ_CP050092	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence	463372-463403	10	0.688
NZ_LN829118_2	2.18\|2301881\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2301881-2301912	32	NZ_CP050081	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence	148108-148139	10	0.688
NZ_LN829118_2	2.18\|2301881\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2301881-2301912	32	NZ_CP049731	Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence	148506-148537	10	0.688
NZ_LN829118_2	2.18\|2301881\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2301881-2301912	32	NZ_CP018229	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence	603741-603772	10	0.688
NZ_LN829118_2	2.18\|2301881\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2301881-2301912	32	NZ_CP016287	Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence	285896-285927	10	0.688
NZ_LN829118_2	2.18\|2301881\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2301881-2301912	32	NZ_CP021127	Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence	56105-56136	10	0.688
NZ_LN829118_2	2.18\|2301881\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2301881-2301912	32	NZ_CP054022	Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence	27130-27161	10	0.688
NZ_LN829118_2	2.18\|2301881\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2301881-2301912	32	NC_012848	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence	139674-139705	10	0.688
NZ_LN829118_2	2.18\|2301881\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2301881-2301912	32	CP007644	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence	57713-57744	10	0.688
NZ_LN829118_2	2.18\|2301881\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2301881-2301912	32	NZ_CP054032	Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence	987564-987595	10	0.688
NZ_LN829118_2	2.18\|2301881\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2301881-2301912	32	NZ_CP053206	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence	146591-146622	10	0.688
NZ_LN829118_2	2.19\|2301942\|32\|NZ_LN829118\|CRISPRCasFinder,CRT	2301942-2301973	32	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	1297717-1297748	11	0.656
NZ_LN829118_2	2.39\|2303162\|32\|NZ_LN829118\|CRISPRCasFinder,CRT,PILER-CR	2303162-2303193	32	NC_025128	Vibrio vulnificus 48/10 plasmid p48/10 complete sequence	26406-26437	11	0.656

1. spacer 1.5|577081|25|NZ_LN829118|CRISPRCasFinder matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 4, identity: 0.84

agaacgtccgaacgggcgaacgcag	CRISPR spacer
ggaacgcccgaacgggcggacgcaa	Protospacer
.*****.***********.*****.

2. spacer 2.38|2303101|32|NZ_LN829118|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021373 (Rhizobium sp. ACO-34A plasmid pRACO34Ac, complete sequence) position: , mismatch: 6, identity: 0.812

cacgatc---aacgggcagcttttcccgctccacc	CRISPR spacer
---gatcgagaacgggcagcttttccggcttcagc	Protospacer
   ****   **************** ***.** *

3. spacer 2.14|2302551|33|NZ_LN829118|PILER-CR matches to NZ_CP045296 (Paenibacillus cellulositrophicus strain KACC 16577 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.788

cctcccgtaacacctccagcgattgcattggcg	CRISPR spacer
ccatccggaactcctccagcgattgcatcgaag	Protospacer
** .*** *** ****************.*. *

4. spacer 2.18|2301881|32|NZ_LN829118|CRISPRCasFinder,CRT matches to MF979563 (Pectobacterium phage DU_PP_IV, complete genome) position: , mismatch: 7, identity: 0.781

ggaaaagggttggtgccggtcttgtcttcatc	CRISPR spacer
gatcattggttggtgccgttcttggcttcatc	Protospacer
*.  *  *********** ***** *******

5. spacer 2.18|2301881|32|NZ_LN829118|CRISPRCasFinder,CRT matches to MF979560 (Pectobacterium phage DU_PP_I, complete genome) position: , mismatch: 7, identity: 0.781

ggaaaagggttggtgccggtcttgtcttcatc	CRISPR spacer
gatcattggttggtgccgttcttggcttcatc	Protospacer
*.  *  *********** ***** *******

6. spacer 2.18|2301881|32|NZ_LN829118|CRISPRCasFinder,CRT matches to KC954774 (Cronobacter phage CR8, complete genome) position: , mismatch: 7, identity: 0.781

ggaaaagggttggtgccggtcttgtcttcatc	CRISPR spacer
gatcattggttggtgccgttcttggcttcatc	Protospacer
*.  *  *********** ***** *******

7. spacer 2.18|2301881|32|NZ_LN829118|CRISPRCasFinder,CRT matches to NC_028672 (Cronobacter phage PBES 02, complete genome) position: , mismatch: 7, identity: 0.781

ggaaaagggttggtgccggtcttgtcttcatc	CRISPR spacer
gatcattggttggtgccgttcttggcttcatc	Protospacer
*.  *  *********** ***** *******

8. spacer 2.18|2301881|32|NZ_LN829118|CRISPRCasFinder,CRT matches to NC_017974 (Cronobacter phage CR3, complete genome) position: , mismatch: 7, identity: 0.781

ggaaaagggttggtgccggtcttgtcttcatc	CRISPR spacer
gatcattggttggtgccgttcttggcttcatc	Protospacer
*.  *  *********** ***** *******

9. spacer 2.19|2301942|32|NZ_LN829118|CRISPRCasFinder,CRT matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

-cacggacgcgctatctcagccactacgaggaa	CRISPR spacer
ccgtgctcg-gcgatctcagccactacgagaaa	Protospacer
 *..*  ** ** *****************.**

10. spacer 2.29|2302552|32|NZ_LN829118|CRISPRCasFinder,CRT matches to NZ_CP045296 (Paenibacillus cellulositrophicus strain KACC 16577 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

ctcccgtaacacctccagcgattgcattggcg	CRISPR spacer
catccggaactcctccagcgattgcatcgaag	Protospacer
* .*** *** ****************.*. *

11. spacer 2.33|2302796|32|NZ_LN829118|CRISPRCasFinder,CRT,PILER-CR matches to MK359302 (Gordonia phage Sombrero, complete genome) position: , mismatch: 7, identity: 0.781

tatg-tctccatcagcattccactgcgcgaggt	CRISPR spacer
-acgccctccatgagccttccactgcgcgaagc	Protospacer
 *.* .****** *** *************.*.

12. spacer 2.38|2303101|32|NZ_LN829118|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015038 (Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence) position: , mismatch: 7, identity: 0.781

cacgatcaacgggcagcttttcccgctccacc	CRISPR spacer
cgcgcctgacgggcaccttttcccgctcgacc	Protospacer
*.** ...******* ************ ***

13. spacer 2.38|2303101|32|NZ_LN829118|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 7, identity: 0.781

cacgatcaacgggcagcttttcccgctccacc	CRISPR spacer
caaaatcaacgggcggattttcccgcttaacg	Protospacer
** .**********.* **********. **

14. spacer 2.38|2303101|32|NZ_LN829118|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 7, identity: 0.781

cacgatcaacgggcagcttttcccgctccacc	CRISPR spacer
caaaatcaacgggcggattttcccgcttaacg	Protospacer
** .**********.* **********. **

15. spacer 2.38|2303101|32|NZ_LN829118|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP023209 (Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence) position: , mismatch: 7, identity: 0.781

cacgatcaacgggcagcttttcccgctccacc	CRISPR spacer
caaaatcaacgggcggattttcccgcttaacg	Protospacer
** .**********.* **********. **

16. spacer 2.38|2303101|32|NZ_LN829118|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024940 (Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence) position: , mismatch: 7, identity: 0.781

cacgatc--aacgggcagcttttcccgctccacc	CRISPR spacer
--tgatcggaaccggcggcttttcccgctccaag	Protospacer
  .****  *** ***.***************

17. spacer 2.38|2303101|32|NZ_LN829118|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 7, identity: 0.781

cacgatcaacgggcagcttttcccgctccacc	CRISPR spacer
caaaatcaacgggcggattttcccgcttaacg	Protospacer
** .**********.* **********. **

18. spacer 2.38|2303101|32|NZ_LN829118|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 7, identity: 0.781

cacgatcaacgggcagcttttcccgctccacc	CRISPR spacer
caaaatcaacgggcggattttcccgcttaacg	Protospacer
** .**********.* **********. **

19. spacer 2.3|2301880|33|NZ_LN829118|PILER-CR matches to MF979563 (Pectobacterium phage DU_PP_IV, complete genome) position: , mismatch: 8, identity: 0.758

cggaaaagggttggtgccggtcttgtcttcatc	CRISPR spacer
ggatcattggttggtgccgttcttggcttcatc	Protospacer
 *.  *  *********** ***** *******

20. spacer 2.3|2301880|33|NZ_LN829118|PILER-CR matches to MF979560 (Pectobacterium phage DU_PP_I, complete genome) position: , mismatch: 8, identity: 0.758

cggaaaagggttggtgccggtcttgtcttcatc	CRISPR spacer
ggatcattggttggtgccgttcttggcttcatc	Protospacer
 *.  *  *********** ***** *******

21. spacer 2.3|2301880|33|NZ_LN829118|PILER-CR matches to KC954774 (Cronobacter phage CR8, complete genome) position: , mismatch: 8, identity: 0.758

cggaaaagggttggtgccggtcttgtcttcatc	CRISPR spacer
ggatcattggttggtgccgttcttggcttcatc	Protospacer
 *.  *  *********** ***** *******

22. spacer 2.3|2301880|33|NZ_LN829118|PILER-CR matches to NC_028672 (Cronobacter phage PBES 02, complete genome) position: , mismatch: 8, identity: 0.758

cggaaaagggttggtgccggtcttgtcttcatc	CRISPR spacer
ggatcattggttggtgccgttcttggcttcatc	Protospacer
 *.  *  *********** ***** *******

23. spacer 2.3|2301880|33|NZ_LN829118|PILER-CR matches to NC_017974 (Cronobacter phage CR3, complete genome) position: , mismatch: 8, identity: 0.758

cggaaaagggttggtgccggtcttgtcttcatc	CRISPR spacer
ggatcattggttggtgccgttcttggcttcatc	Protospacer
 *.  *  *********** ***** *******

24. spacer 2.17|2301820|32|NZ_LN829118|CRISPRCasFinder,CRT matches to NZ_CP041206 (Rhizobium sp. NIBRBAC000502774 plasmid pMK-3, complete sequence) position: , mismatch: 8, identity: 0.75

ccggcgtcgtcaagcttgacattgaccggatc	CRISPR spacer
acgtctgcgtcaagcttgccatcgaccggaag	Protospacer
 ** *  *********** ***.*******

25. spacer 2.38|2303101|32|NZ_LN829118|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 8, identity: 0.75

cacgatcaacgggcagcttttcccgctccacc	CRISPR spacer
ggccatcaccgggcagcttctcccgctcatcg	Protospacer
 .* **** **********.********  *

26. spacer 2.38|2303101|32|NZ_LN829118|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

cacgatcaa-----cgggcagcttttcccgctccacc	CRISPR spacer
-----ccaaggactcgggcagcttttccagcaccacc	Protospacer
     .***     ************** ** *****

27. spacer 2.38|2303101|32|NZ_LN829118|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 8, identity: 0.75

cacgatcaa-----cgggcagcttttcccgctccacc	CRISPR spacer
-----ccaaggactcgggcagcttttccagcaccacc	Protospacer
     .***     ************** ** *****

28. spacer 2.17|2301820|32|NZ_LN829118|CRISPRCasFinder,CRT matches to MK977696 (Gordonia phage SCentae, complete genome) position: , mismatch: 9, identity: 0.719

ccggcgtcgtcaagcttgacattgaccggatc	CRISPR spacer
agaccgtcgtcaagctcgacatggacctcctc	Protospacer
  . ************.***** ****   **

29. spacer 2.17|2301820|32|NZ_LN829118|CRISPRCasFinder,CRT matches to MK977695 (Gordonia phage Pupper, complete genome) position: , mismatch: 9, identity: 0.719

ccggcgtcgtcaagcttgacattgaccggatc	CRISPR spacer
agaccgtcgtcaagctcgacatggacctcctc	Protospacer
  . ************.***** ****   **

30. spacer 2.18|2301881|32|NZ_LN829118|CRISPRCasFinder,CRT matches to NZ_CP050098 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence) position: , mismatch: 9, identity: 0.719

ggaaaagggttggtgccggtcttgtcttcatc	CRISPR spacer
gcagcgatgtggttgccggtcttgtcttcata	Protospacer
* *. .. ** * ******************

31. spacer 2.18|2301881|32|NZ_LN829118|CRISPRCasFinder,CRT matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 9, identity: 0.719

ggaaaagggttggtgccggtcttgtcttcatc	CRISPR spacer
gcggcaatgtggttgccggtcttgtcttcata	Protospacer
* .. *. ** * ******************

32. spacer 2.18|2301881|32|NZ_LN829118|CRISPRCasFinder,CRT matches to NZ_CP053440 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence) position: , mismatch: 9, identity: 0.719

ggaaaagggttggtgccggtcttgtcttcatc	CRISPR spacer
gcagcgatgtggttgccggtcttgtcttcata	Protospacer
* *. .. ** * ******************

33. spacer 2.18|2301881|32|NZ_LN829118|CRISPRCasFinder,CRT matches to NZ_CP018229 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ggaaaagggttggtgccggtcttgtcttcatc	CRISPR spacer
gacggcgggttgctgccggtcttgtcgtcggc	Protospacer
*. .. ****** ************* **. *

34. spacer 2.18|2301881|32|NZ_LN829118|CRISPRCasFinder,CRT matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ggaaaagggttggtgccggtcttgtcttcatc	CRISPR spacer
gacggcgggttgctgccggtcttgtcgtcggc	Protospacer
*. .. ****** ************* **. *

35. spacer 2.22|2302125|32|NZ_LN829118|CRISPRCasFinder,CRT matches to NZ_CP014052 (Vibrio alginolyticus strain FDAARGOS_108 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gtccttacgtcatgagaacgcagcggcaacaa	CRISPR spacer
tgaactacgtcatgagaacgcagggccaaaat	Protospacer
    .****************** * *** *

36. spacer 2.22|2302125|32|NZ_LN829118|CRISPRCasFinder,CRT matches to NZ_KP688397 (Vibrio parahaemolyticus strain V36 plasmid pVPH1, complete sequence) position: , mismatch: 9, identity: 0.719

gtccttacgtcatgagaacgcagcggcaacaa	CRISPR spacer
tgaactacgtcatgagaacgcagggccaaaat	Protospacer
    .****************** * *** *

37. spacer 2.22|2302125|32|NZ_LN829118|CRISPRCasFinder,CRT matches to NZ_KP791968 (Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence) position: , mismatch: 9, identity: 0.719

gtccttacgtcatgagaacgcagcggcaacaa	CRISPR spacer
tgaactacgtcatgagaacgcagggccaaaat	Protospacer
    .****************** * *** *

38. spacer 2.22|2302125|32|NZ_LN829118|CRISPRCasFinder,CRT matches to NZ_CP025539 (Vibrio harveyi strain 345 plasmid p345-185, complete sequence) position: , mismatch: 9, identity: 0.719

gtccttacgtcatgagaacgcagcggcaacaa	CRISPR spacer
tgaactacgtcatgagaacgcagggccaaaat	Protospacer
    .****************** * *** *

39. spacer 2.22|2302125|32|NZ_LN829118|CRISPRCasFinder,CRT matches to MN865127 (Vibrio alginolyticus strain C1579 plasmid pC1579, complete sequence) position: , mismatch: 9, identity: 0.719

gtccttacgtcatgagaacgcagcggcaacaa	CRISPR spacer
tgaactacgtcatgagaacgcagggccaaaat	Protospacer
    .****************** * *** *

40. spacer 2.22|2302125|32|NZ_LN829118|CRISPRCasFinder,CRT matches to NC_025127 (Vibrio sp. 04Ya090 plasmid pAQU2 DNA, complete sequence) position: , mismatch: 9, identity: 0.719

gtccttacgtcatgagaacgcagcggcaacaa	CRISPR spacer
tgaactacgtcatgagaacgcagggccaaaat	Protospacer
    .****************** * *** *

41. spacer 2.22|2302125|32|NZ_LN829118|CRISPRCasFinder,CRT matches to NC_016983 (Photobacterium damselae subsp. damselae plasmid pAQU1, complete sequence) position: , mismatch: 9, identity: 0.719

gtccttacgtcatgagaacgcagcggcaacaa	CRISPR spacer
tgaactacgtcatgagaacgcagggccaaaat	Protospacer
    .****************** * *** *

42. spacer 2.22|2302125|32|NZ_LN829118|CRISPRCasFinder,CRT matches to NZ_CP034301 (Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-2, complete sequence) position: , mismatch: 9, identity: 0.719

gtccttacgtcatgagaacgcagcggcaacaa	CRISPR spacer
tgaactacgtcatgagaacgcagggccaaaat	Protospacer
    .****************** * *** *

43. spacer 2.22|2302125|32|NZ_LN829118|CRISPRCasFinder,CRT matches to KX957970 (Vibrio parahaemolyticus plasmid pVPS43, complete sequence) position: , mismatch: 9, identity: 0.719

gtccttacgtcatgagaacgcagcggcaacaa	CRISPR spacer
tgaactacgtcatgagaacgcagggccaaaat	Protospacer
    .****************** * *** *

44. spacer 2.22|2302125|32|NZ_LN829118|CRISPRCasFinder,CRT matches to KX957971 (Vibrio parahaemolyticus plasmid pVPS62, complete sequence) position: , mismatch: 9, identity: 0.719

gtccttacgtcatgagaacgcagcggcaacaa	CRISPR spacer
tgaactacgtcatgagaacgcagggccaaaat	Protospacer
    .****************** * *** *

45. spacer 2.22|2302125|32|NZ_LN829118|CRISPRCasFinder,CRT matches to KX957972 (Vibrio parahaemolyticus plasmid pVPS91, complete sequence) position: , mismatch: 9, identity: 0.719

gtccttacgtcatgagaacgcagcggcaacaa	CRISPR spacer
tgaactacgtcatgagaacgcagggccaaaat	Protospacer
    .****************** * *** *

46. spacer 2.22|2302125|32|NZ_LN829118|CRISPRCasFinder,CRT matches to KX957968 (Vibrio alginolyticus plasmid pVAS19, complete sequence) position: , mismatch: 9, identity: 0.719

gtccttacgtcatgagaacgcagcggcaacaa	CRISPR spacer
tgaactacgtcatgagaacgcagggccaaaat	Protospacer
    .****************** * *** *

47. spacer 2.22|2302125|32|NZ_LN829118|CRISPRCasFinder,CRT matches to KX957969 (Vibrio alginolyticus plasmid pVAS114, complete sequence) position: , mismatch: 9, identity: 0.719

gtccttacgtcatgagaacgcagcggcaacaa	CRISPR spacer
tgaactacgtcatgagaacgcagggccaaaat	Protospacer
    .****************** * *** *

48. spacer 2.24|2302247|32|NZ_LN829118|CRISPRCasFinder,CRT matches to NZ_CP014308 (Burkholderia sp. PAMC 26561 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ctaccccagttcaggaggctctaggaggcatc	CRISPR spacer
gtaaccctgttcaggaggctctagatgcgctt	Protospacer
 ** *** ****************. *   *.

49. spacer 2.24|2302247|32|NZ_LN829118|CRISPRCasFinder,CRT matches to NZ_CP014309 (Burkholderia sp. PAMC 26561 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

ctaccccagttcaggaggctctaggaggcatc	CRISPR spacer
gtaaccctgttcaggaggctctagatgcgctt	Protospacer
 ** *** ****************. *   *.

50. spacer 2.7|2302124|33|NZ_LN829118|PILER-CR matches to NZ_CP014052 (Vibrio alginolyticus strain FDAARGOS_108 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.697

cgtccttacgtcatgagaacgcagcggcaacaa	CRISPR spacer
ttgaactacgtcatgagaacgcagggccaaaat	Protospacer
.    .****************** * *** *

51. spacer 2.7|2302124|33|NZ_LN829118|PILER-CR matches to NZ_KP791968 (Vibrio parahaemolyticus strain 2011VPH2 plasmid pVPH2, complete sequence) position: , mismatch: 10, identity: 0.697

cgtccttacgtcatgagaacgcagcggcaacaa	CRISPR spacer
ttgaactacgtcatgagaacgcagggccaaaat	Protospacer
.    .****************** * *** *

52. spacer 2.7|2302124|33|NZ_LN829118|PILER-CR matches to NZ_CP034301 (Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-2, complete sequence) position: , mismatch: 10, identity: 0.697

cgtccttacgtcatgagaacgcagcggcaacaa	CRISPR spacer
ttgaactacgtcatgagaacgcagggccaaaat	Protospacer
.    .****************** * *** *

53. spacer 2.7|2302124|33|NZ_LN829118|PILER-CR matches to NZ_KP688397 (Vibrio parahaemolyticus strain V36 plasmid pVPH1, complete sequence) position: , mismatch: 10, identity: 0.697

cgtccttacgtcatgagaacgcagcggcaacaa	CRISPR spacer
ttgaactacgtcatgagaacgcagggccaaaat	Protospacer
.    .****************** * *** *

54. spacer 2.7|2302124|33|NZ_LN829118|PILER-CR matches to NZ_CP025539 (Vibrio harveyi strain 345 plasmid p345-185, complete sequence) position: , mismatch: 10, identity: 0.697

cgtccttacgtcatgagaacgcagcggcaacaa	CRISPR spacer
ttgaactacgtcatgagaacgcagggccaaaat	Protospacer
.    .****************** * *** *

55. spacer 2.7|2302124|33|NZ_LN829118|PILER-CR matches to MN865127 (Vibrio alginolyticus strain C1579 plasmid pC1579, complete sequence) position: , mismatch: 10, identity: 0.697

cgtccttacgtcatgagaacgcagcggcaacaa	CRISPR spacer
ttgaactacgtcatgagaacgcagggccaaaat	Protospacer
.    .****************** * *** *

56. spacer 2.7|2302124|33|NZ_LN829118|PILER-CR matches to NC_025127 (Vibrio sp. 04Ya090 plasmid pAQU2 DNA, complete sequence) position: , mismatch: 10, identity: 0.697

cgtccttacgtcatgagaacgcagcggcaacaa	CRISPR spacer
ttgaactacgtcatgagaacgcagggccaaaat	Protospacer
.    .****************** * *** *

57. spacer 2.7|2302124|33|NZ_LN829118|PILER-CR matches to NC_016983 (Photobacterium damselae subsp. damselae plasmid pAQU1, complete sequence) position: , mismatch: 10, identity: 0.697

cgtccttacgtcatgagaacgcagcggcaacaa	CRISPR spacer
ttgaactacgtcatgagaacgcagggccaaaat	Protospacer
.    .****************** * *** *

58. spacer 2.7|2302124|33|NZ_LN829118|PILER-CR matches to KX957970 (Vibrio parahaemolyticus plasmid pVPS43, complete sequence) position: , mismatch: 10, identity: 0.697

cgtccttacgtcatgagaacgcagcggcaacaa	CRISPR spacer
ttgaactacgtcatgagaacgcagggccaaaat	Protospacer
.    .****************** * *** *

59. spacer 2.7|2302124|33|NZ_LN829118|PILER-CR matches to KX957971 (Vibrio parahaemolyticus plasmid pVPS62, complete sequence) position: , mismatch: 10, identity: 0.697

cgtccttacgtcatgagaacgcagcggcaacaa	CRISPR spacer
ttgaactacgtcatgagaacgcagggccaaaat	Protospacer
.    .****************** * *** *

60. spacer 2.7|2302124|33|NZ_LN829118|PILER-CR matches to KX957972 (Vibrio parahaemolyticus plasmid pVPS91, complete sequence) position: , mismatch: 10, identity: 0.697

cgtccttacgtcatgagaacgcagcggcaacaa	CRISPR spacer
ttgaactacgtcatgagaacgcagggccaaaat	Protospacer
.    .****************** * *** *

61. spacer 2.7|2302124|33|NZ_LN829118|PILER-CR matches to KX957968 (Vibrio alginolyticus plasmid pVAS19, complete sequence) position: , mismatch: 10, identity: 0.697

cgtccttacgtcatgagaacgcagcggcaacaa	CRISPR spacer
ttgaactacgtcatgagaacgcagggccaaaat	Protospacer
.    .****************** * *** *

62. spacer 2.7|2302124|33|NZ_LN829118|PILER-CR matches to KX957969 (Vibrio alginolyticus plasmid pVAS114, complete sequence) position: , mismatch: 10, identity: 0.697

cgtccttacgtcatgagaacgcagcggcaacaa	CRISPR spacer
ttgaactacgtcatgagaacgcagggccaaaat	Protospacer
.    .****************** * *** *

63. spacer 2.18|2301881|32|NZ_LN829118|CRISPRCasFinder,CRT matches to NZ_CP050092 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence) position: , mismatch: 10, identity: 0.688

ggaaaagggttggtgccggtcttgtcttcatc	CRISPR spacer
gcggcgatgtggttgccggtcttgtcttcata	Protospacer
* .. .. ** * ******************

64. spacer 2.18|2301881|32|NZ_LN829118|CRISPRCasFinder,CRT matches to NZ_CP050081 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence) position: , mismatch: 10, identity: 0.688

ggaaaagggttggtgccggtcttgtcttcatc	CRISPR spacer
gcggcgatgtggttgccggtcttgtcttcata	Protospacer
* .. .. ** * ******************

65. spacer 2.18|2301881|32|NZ_LN829118|CRISPRCasFinder,CRT matches to NZ_CP049731 (Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence) position: , mismatch: 10, identity: 0.688

ggaaaagggttggtgccggtcttgtcttcatc	CRISPR spacer
gcggcgatgtggttgccggtcttgtcttcata	Protospacer
* .. .. ** * ******************

66. spacer 2.18|2301881|32|NZ_LN829118|CRISPRCasFinder,CRT matches to NZ_CP018229 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ggaaaagggttggtgccggtcttgtcttcatc	CRISPR spacer
gcggcgatgtggttgccggtcttgtcttcata	Protospacer
* .. .. ** * ******************

67. spacer 2.18|2301881|32|NZ_LN829118|CRISPRCasFinder,CRT matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ggaaaagggttggtgccggtcttgtcttcatc	CRISPR spacer
gcggcgatgtggttgccggtcttgtcttcata	Protospacer
* .. .. ** * ******************

68. spacer 2.18|2301881|32|NZ_LN829118|CRISPRCasFinder,CRT matches to NZ_CP021127 (Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence) position: , mismatch: 10, identity: 0.688

ggaaaagggttggtgccggtcttgtcttcatc	CRISPR spacer
gcggcgatgtggttgccggtcttgtcttcata	Protospacer
* .. .. ** * ******************

69. spacer 2.18|2301881|32|NZ_LN829118|CRISPRCasFinder,CRT matches to NZ_CP054022 (Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence) position: , mismatch: 10, identity: 0.688

ggaaaagggttggtgccggtcttgtcttcatc	CRISPR spacer
gcggcgatgtggttgccggtcttgtcttcata	Protospacer
* .. .. ** * ******************

70. spacer 2.18|2301881|32|NZ_LN829118|CRISPRCasFinder,CRT matches to NC_012848 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence) position: , mismatch: 10, identity: 0.688

ggaaaagggttggtgccggtcttgtcttcatc	CRISPR spacer
gccgcgatgtggttgccggtcttgtcttcata	Protospacer
*  . .. ** * ******************

71. spacer 2.18|2301881|32|NZ_LN829118|CRISPRCasFinder,CRT matches to CP007644 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence) position: , mismatch: 10, identity: 0.688

ggaaaagggttggtgccggtcttgtcttcatc	CRISPR spacer
gcggcgatgtggttgccggtcttgtcttcata	Protospacer
* .. .. ** * ******************

72. spacer 2.18|2301881|32|NZ_LN829118|CRISPRCasFinder,CRT matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 10, identity: 0.688

ggaaaagggttggtgccggtcttgtcttcatc	CRISPR spacer
gcggcgatgtggttgccggtcttgtcttcata	Protospacer
* .. .. ** * ******************

73. spacer 2.18|2301881|32|NZ_LN829118|CRISPRCasFinder,CRT matches to NZ_CP053206 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence) position: , mismatch: 10, identity: 0.688

ggaaaagggttggtgccggtcttgtcttcatc	CRISPR spacer
gcggcgatgtggttgccggtcttgtcttcata	Protospacer
* .. .. ** * ******************

74. spacer 2.19|2301942|32|NZ_LN829118|CRISPRCasFinder,CRT matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 11, identity: 0.656

cacggacgcgctatctcagccactacgaggaa	CRISPR spacer
ggtatccgcgcgatctcagcccctacgagcct	Protospacer
 ...  ***** ********* *******

75. spacer 2.39|2303162|32|NZ_LN829118|CRISPRCasFinder,CRT,PILER-CR matches to NC_025128 (Vibrio vulnificus 48/10 plasmid p48/10 complete sequence) position: , mismatch: 11, identity: 0.656

gatcgatgtgataatcgcaaccacccaacagg	CRISPR spacer
tgaagatgtgataatctcaagcacccagataa	Protospacer
 .  ************ *** ******.  ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2377541 : 2392758

Paracoccus_phage(18.18%)

capsid,portal,tail,protease,head

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_139165368.1\|2377541_2378894_+	DNA-packaging protein	A0A0K1LMR9	Caulobacter_phage	3.7e-72	40.1
WP_082101280.1\|2378933_2380139_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	1.3e-73	40.9
WP_046480306.1\|2380131_2380830_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	6.0e-34	43.5
WP_046478361.1\|2380856_2382080_+\|capsid	phage major capsid protein	Q8HAD2	Salmonella_phage	1.3e-84	44.4
WP_046478362.1\|2382302_2382878_+\|head,tail	phage head-tail connector protein	A0A0F7L420	uncultured_marine_virus	7.9e-16	31.0
WP_046478363.1\|2382874_2383213_+\|head	phage head closure protein	NA	NA	NA	NA
WP_046478364.1\|2383364_2383775_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_046478365.1\|2383893_2384307_+\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_046478366.1\|2384326_2384719_+	gene transfer agent family protein	NA	NA	NA	NA
WP_076605319.1\|2384718_2384892_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_046478367.1\|2384895_2385480_+\|tail	phage tail tape measure protein	D6PFD6	uncultured_phage	1.5e-09	37.7
WP_046478368.1\|2385499_2386138_+	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	1.1e-53	50.2
WP_046478369.1\|2386134_2387007_+	DUF2163 domain-containing protein	A0A0K0PVK1	Roseobacter_phage	7.1e-69	48.4
WP_046480307.1\|2387066_2387498_+	peptidase P60	F4YXU4	Roseobacter_phage	5.0e-31	47.9
WP_046478370.1\|2387500_2391400_+\|tail	glycoside hydrolase/phage tail family protein	A0A0K1LL82	Rhodobacter_phage	2.2e-255	42.2
WP_046478371.1\|2391429_2392758_+	TIGR02594 family protein	X4YDL4	Salmonella_phage	1.0e-26	43.4

DBSCAN-SWA_2

3227172 : 3236889

uncultured_Mediterranean_phage(75.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046479119.1\|3227172_3228612_-	peptidoglycan DD-metalloendopeptidase family protein	Q8SBN9	Clostridium_phage	5.2e-16	37.6
WP_046479120.1\|3228905_3229697_-	5'/3'-nucleotidase SurE	NA	NA	NA	NA
WP_046479121.1\|3229716_3230997_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.7e-106	46.8
WP_046479122.1\|3231105_3231918_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	2.2e-48	43.8
WP_052743900.1\|3231914_3232391_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_046479123.1\|3232477_3232714_-	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	7.2e-08	74.4
WP_082101265.1\|3232830_3233979_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.0e-31	36.8
WP_082101119.1\|3234113_3234938_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	6.1e-46	53.0
WP_046479124.1\|3234974_3235793_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	3.6e-30	31.6
WP_046479125.1\|3235860_3236889_-	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	5.2e-26	47.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LN829118

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection