CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP026286	Microcystis aeruginosa NIES-2549 plasmid p1, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP011304	Microcystis aeruginosa NIES-2549 chromosome, complete genome	29 crisprs	cas14j,c2c9_V-U4,Cas14c_CAS-V-F,RT,csa3,cas14k,2OG_CAS,DinG,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cas2,cas1,cas4,cas6,cas3,cas5,cas7,cas8b5,WYL	4	33	6	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011304_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011304_1

142678-142818

TypeV

Consensus_repeat	Method
TTATTTATTCTCCCCTCTCCCTTC	CRISPRCasFinder

2 spacers

cas14j

The CRISPR arrays of NZ_CP011304_1

>merge|NZ_CP011304|1|142678-142818|CRISPRCasFinder
TTATTTATTCTCCCCTCTCCCTTCCCCCTAATTCATAATTCATAATTCATACTAAATTCGGTTATTAAAAACTGATTATTTATTCTCCCCTCTCCCCTCTCCCCACTTCCCACTCCCTTCTCCCTTCTCCCTTCTCCCCTT

>NZ_CP011304|1|1|142678-142818|CRISPRCasFinder
TTATTTATTCTCCCCTCTCCCTTC	CCCCTAATTCATAATTCATAATTCATACTAAATTCGGTTATTAAAAACTGA
TTATTTATTCTCCCCTCTCCCCTC	TCCCCACTTCCCACTCCC
TTCTCCCTTCTCCCTTCTCCCCTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011304.1\|WP_046660543.1\|138827_140042_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	cas14j	-	gnl\|CDD\|223747
NZ_CP011304.1\|WP_046660547.1\|143776_144778_-\|saccharopine-dehydrogenase-like-oxidoreductase	unknown	unknown	gnl\|CDD\|235763
NZ_CP011304.1\|WP_002767352.1\|132873_133215_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|226679
NZ_CP011304.1\|WP_046660548.1\|145734_146142_+\|ferredoxin	unknown	unknown	gnl\|CDD\|379145
NZ_CP011304.1\|WP_046663555.1\|130984_131668_-\|transporter	unknown	unknown	gnl\|CDD\|226750
NZ_CP011304.1\|WP_002747572.1\|138146_138503_-\|iron-sulfur-cluster-assembly-accessory-protein	unknown	unknown	gnl\|CDD\|272875
NZ_CP011304.1\|WP_046660541.1\|131815_132736_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176112
NZ_CP011304.1\|WP_002762644.1\|145348_145735_+\|DUF1257-domain-containing-protein	unknown	unknown	gnl\|CDD\|177092
NZ_CP011304.1\|WP_046660545.1\|141545_142628_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214939
NZ_CP011304.1\|WP_046660546.1\|142853_143780_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|161659
NZ_CP011304.1\|WP_046660551.1\|149838_150045_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_002752708.1\|145088_145304_+\|DUF2997-domain-containing-protein	unknown	unknown	gnl\|CDD\|314207
NZ_CP011304.1\|WP_046660544.1\|140152_140542_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046663556.1\|140753_141095_+\|phage-holin-family-protein	unknown	unknown	gnl\|CDD\|377198
NZ_CP011304.1\|WP_046660549.1\|146257_146560_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046660542.1\|133468_137461_-\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|378996
NZ_CP011304.1\|WP_002794295.1\|146560_146950_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_002747571.1\|137679_137946_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_080949693.1\|147890_149519_-\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|223104
NZ_CP011304.1\|WP_046660550.1\|147217_147934_+\|TrkA-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|223643

Protein	Function_ID	Function_description	E-value
NZ_CP011304.1\|WP_046660543.1\|138827_140042_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.71719e-67
NZ_CP011304.1\|WP_046660547.1\|143776_144778_-\|saccharopine-dehydrogenase-like-oxidoreductase	gnl\|CDD\|235763	PRK06270, PRK06270, homoserine dehydrogenase; Provisional.	4.22584e-08
NZ_CP011304.1\|WP_002767352.1\|132873_133215_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|226679	COG4226, HicB, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	4.89313e-34
NZ_CP011304.1\|WP_046660548.1\|145734_146142_+\|ferredoxin	gnl\|CDD\|379145	pfam13370, Fer4_13, 4Fe-4S single cluster domain of Ferredoxin I. Fer4_13 is a ferredoxin I from sulfate-reducing bacteria. Chemical sequence analysis suggests that this characteristic [4Fe-4S] cluster sulfur environment is widely distributed among ferredoxins.	2.95685e-20
NZ_CP011304.1\|WP_046663555.1\|130984_131668_-\|transporter	gnl\|CDD\|226750	COG4300, CadD, Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism].	3.98443e-45
NZ_CP011304.1\|WP_002747572.1\|138146_138503_-\|iron-sulfur-cluster-assembly-accessory-protein	gnl\|CDD\|272875	TIGR00049, Uncharacterized_protein_in_nifU_5'region, Iron-sulfur cluster assembly accessory protein. Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	7.35402e-50
NZ_CP011304.1\|WP_046660541.1\|131815_132736_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176112	cd08420, PBP2_CysL_like, C-terminal substrate binding domain of LysR-type transcriptional regulator CysL, which activates the transcription of the cysJI operon encoding sulfite reductase, contains the type 2 periplasmic binding fold. CysL, also known as YwfK, is a regular of sulfur metabolism in Bacillus subtilis. Sulfur is required for the synthesis of proteins and essential cofactors in all living organism. Sulfur can be assimilated either from inorganic sources (sulfate and thiosulfate), or from organic sources (sulfate esters, sulfamates, and sulfonates). CysL activates the transcription of the cysJI operon encoding sulfite reductase, which reduces sulfite to sulfide. Both cysL mutant and cysJI mutant are unable to grow using sulfate or sulfite as the sulfur source. Like other LysR-type regulators, CysL also negatively regulates its own transcription. In Escherichia coli, three LysR-type activators are involved in the regulation of sulfur metabolism: CysB, Cbl and MetR. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.40408e-58
NZ_CP011304.1\|WP_002762644.1\|145348_145735_+\|DUF1257-domain-containing-protein	gnl\|CDD\|177092	CHL00193, ycf35, Ycf35; Provisional.	3.28467e-63
NZ_CP011304.1\|WP_046660545.1\|141545_142628_+\|hypothetical-protein	gnl\|CDD\|214939	smart00960, Robl_LC7, Roadblock/LC7 domain. This family includes proteins that are about 100 amino acids long and have been shown to be related. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions. This family also includes Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus, a protein involved in gliding motility. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.	2.88039e-06
NZ_CP011304.1\|WP_046660546.1\|142853_143780_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|161659	TIGR00005, Ribosomal_large_subunit_pseudouridine_synthase_D, pseudouridine synthase, RluA family. In E. coli, RluD (SfhB) modifies uridine to pseudouridine at 23S RNA U1911, 1915, and 1917, RluC modifies 955, 2504 and 2580, and RluA modifies U746 and tRNA U32. An additional homolog from E. coli outside this family, TruC (SP\|Q46918), modifies uracil-65 in transfer RNAs to pseudouridine. [Protein synthesis, tRNA and rRNA base modification].	1.00953e-117
NZ_CP011304.1\|WP_002752708.1\|145088_145304_+\|DUF2997-domain-containing-protein	gnl\|CDD\|314207	pfam11211, DUF2997, Protein of unknown function (DUF2997). This family of proteins has no known function.	6.47691e-20
NZ_CP011304.1\|WP_046663556.1\|140753_141095_+\|phage-holin-family-protein	gnl\|CDD\|377198	pfam04020, Phage_holin_4_2, Mycobacterial 4 TMS phage holin, superfamily IV. These proteins are predicted transmembrane proteins with probably four transmembrane spans. The 1.E.40 is represented by the mycobacterial 4 phage holin, but it also contains many cyanobacterial. proteobacterial and firmicute proteins. Holins are encoded within the genomes of Gram-positive and Gram-negative bacteria as well as in those of the bacteriophage of these organisms. The primary function of holins appears to be transport of murein hydrolases across the cytoplasmic membrane to the cell wall where these enzymes hydrolyze the cell wall polymer as a prelude to cell lysis. When chromosomally encoded the enzymes are therefore autolysins. Holins may also facilitate leakage of electrolytes and nutrients from the cell cytoplasm, thereby promoting cell death. Some may catalyze export of nucleases.	8.9278e-21
NZ_CP011304.1\|WP_046660542.1\|133468_137461_-\|N-6-DNA-methylase	gnl\|CDD\|378996	pfam12950, TaqI_C, TaqI-like C-terminal specificity domain. This domain is found at the C-terminus of the TaqI protein and is involved in DNA-binding and substrate recognition.	5.59464e-14
NZ_CP011304.1\|WP_080949693.1\|147890_149519_-\|sodium:proton-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	5.56979e-76
NZ_CP011304.1\|WP_046660550.1\|147217_147934_+\|TrkA-family-potassium-uptake-protein	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	1.80166e-49

>NZ_CP011304.1|WP_046660545.1|141545_142628_+|hypothetical-protein
MSWIVEQLIYRSFSQLGFKYIASANVPPGIQQVFYQHIVSQLWDTYNPPHRNFKGVYIYQIDSHNTLFGWLINDGKDEFGPGDIPYFHCYYLRELLDSKKLVKILACLEAGPLKRLGRDEAKISLDPVILADNYQANAFELGIKLSKDIRLFSHRQLREEKPLQWFISLEETKERPHPTDNNYDNSKDTFLREPNYQAEIAKIMEELAEKPIAIEGIMLVSPQGQPLTDSIGMPHNSALILAGTMIYLANNTKEELSWSDVEQIAIRSPQGHLILTPCSDQAFLLVKTGKTITGLLEGEIQKTRSKLAKILAISNPTPHPPLLNPTVNPFLDSVVEEFEIVLETEDDNSTDIRYPGRTLQ
>NZ_CP011304.1|WP_046663556.1|140753_141095_+|phage-holin-family-protein
MLSFFLRWLITAVSLLITAQIVPGIEIKNFTVALIAAVVLGLINAIVRPLLILFTLPLTILTLGLFIFVVNAISFSLASYFISGFEVKSFFAALFGSIVVSIISGVLNGIFVD
>NZ_CP011304.1|WP_046660544.1|140152_140542_-|hypothetical-protein
MISRKNFSQSQQVEIGKTRIIQGATGTLMLMSLLSLLLAPPSLASPEPPNSVIAATRQDLSRKTKISVNRLQIQAAQPQTWPDGCLGLAKPGEFCTQALVQGWRIILTDNQKTWVYRTDSSGTNLRLEK
>NZ_CP011304.1|WP_046660543.1|138827_140042_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MEKAYSYRFYPTPEQESLLRRTLGCVRLVYNKALHERTQAWYERQERVGYAQTSSMLTDWKKQEELDFLNEVSCVPLQQGLRHLQTAFNNFFSGRTKYPNFKKKHQGGSAEFTKSAFKFKDRQIYLAKCTEPLPIRWSRQIPDGCEPSTVTVRLHPSGRWHISIRFDDPTIKPLPVTDKAIGIDLGISSIVITSDGDKVSNSKHFKKHYQRLRRASKNLSRKQKGSKNREKARIKVAKIHAQITDSRKDHLHKLTTQLVRENQTIVVENLAIKNMVKNPKLSQAISDVSWGEITRQLAYKCRWYGRNYIEIDRWFPSSKRCSNCGYIAEKMPLNVREWDCPICGTHHDRDINASKNILAAGLAVSVCRATIRPEQSKSVKAGAEPRKASAVSVSRTGKKQKPKS
>NZ_CP011304.1|WP_002747572.1|138146_138503_-|iron-sulfur-cluster-assembly-accessory-protein
MTQATQIQGKGILLSEAALKHLTMLKEQQGKDLCLRVGVRQGGCSGMSYMMDFEHPSNIGPQDEVFDYDGFKIVSDKKSLLYLYGLMLDYSNAMIGGGFQFTNPNASQTCGCGKSFGV
>NZ_CP011304.1|WP_002747571.1|137679_137946_+|hypothetical-protein
MTPQAIPKLNHLPSALAREGAVCLELEDGVAIFRASTAVQTRIEELLQLEKESAITPAQKQELDAYEEIDDYLSFVNRTLRNLSQNPS
>NZ_CP011304.1|WP_046660542.1|133468_137461_-|N-6-DNA-methylase
MSGQASNKPLFSQHYLEHRLPDSGEWQEDVSVAFSRLESLYQQKKAILPTLNEAQTEAELIQPILEILGFSYIPQVSSRGKGRSERPDYALFATENDRYQAYALQNNERAFYSQVLAIAEAKYWQRSLSDVSKNDQRDIWKNSNPSFQITNYLTGTGVDWGILTNGREWRLYYRQASSTATEFYLVDLMELLEGGDRQKFPYFWLFFRQEAFIKDIHGQNFLERVREGSTTYATRVGNELKELVFDRIFPDISQGFVSLNTDIQPDLLYEASLSLLYKLLFLLYAEARDLLPVRGDYRDYSLLQKTREIAVKIDRQQVFSGTSTGIYDALLSLFRIVDRGDANLAVPRYNGGLFDMEEGRVNCFLGQYKLSDAVLAPILDKLARFEGQPIDYSFLGVRQLGSIYEGLLEYRIVIEGESVHLENDRGERKATGSYYTPDYIVKYIVSHTLKPILEQRARQFGDVMTEIATRRQESSDRRLGNLSQQGLEKELQRLEKKAITTLLDLKLCDPAMGSGHFLVEAVDYLTDELIQILNLYPEDNPVLTMLETTRQNIIDNLRQQGIILDSPTLEPTQLLQRVVMKRCIYGVDINPMAVELAKVSLWLHSFTVGAPLSFLDHHLRCGNSLIGTTAKDAEAAMIEEEGGQLTLLTGPFVGLLRAAEIMRGISTLSDATFAEVEASEQLFRDFDSQAKPYKRLLDVFLSRFFGVKTAIEFLQRYGGNISAINWDKLPRSDQGILDQAASLYKSKRFFHWDLEFPEVFIDLDSASWKDNPGFDAVIGNPPYVRQEGLKDIKPFLKENYQSFHGVADLYVYFVEMGLLSLQQGGHLGLIISNKFMRANYGTKLRQFLTQQTTIKEIIDFGELPVFSEAATFPSILLIENNIVGQQNVLVSKIKSLKFNSLIDVINDLSYYVCENSLSVEGWSLAKNQIATIVEKLQKKAVFLSEYVNNQIYLGIKTGCNEAFVIDKNIKEYLVKTDPNNQQFIKSLIVGDDLRKYEIKNRDLYLLLIPWGWTKQKIDTDQEKLAWNYLSSLYPSLTKHLEGFAEKARKRCDQGQFWWELRPCTYYDIFEKPKIIYPDIAKESRFTLDNNGFYSINTTYLIPSQSYYLLALLNSSLIFFYMSQNSAVLGDTEKQGRLRFFGQYMENIPIRKISFSTNSDHRQQSLEKLIKSYQEKQEILKEIEEHIRREETDIVHDILAYLAEQMIEINREKQKEIKSFLRYLERIIGSAIDNLTNKSKIQNYLGDYQKSEPHLSCDQLWEILKKNKKKISVNLLDRQIQETLEKEYQTSLDKLLPLKQQLSATDELIDIIVYKLYGLSEEEIKIIEGRE
>NZ_CP011304.1|WP_002767352.1|132873_133215_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MYTTTYKGYTGKFEIDFDDNLISGIVIDIKDVITFHGKTIEEAVQCFHESVDDYLEFCQELGEEPDQPFSGKLPYQTTPEIHRKIYLAATKKGKSINAWMDEVLSQKAQELVG
>NZ_CP011304.1|WP_046660541.1|131815_132736_+|LysR-family-transcriptional-regulator
MARMTLDQLEIFLATAEHLHFTKAAEALYITQPAVSAAIASLENEYGVKLFHRVGRHIEITETGRLLQLEAQRILTQVTLTERGLAEFNDLQRGELQLGSSLTIGNYWLPAKISDFQERYPAIKINCTLANTEEICLGTANGRFDLALIEGEVKSDLTHCLEQEIVGSDRLLIIVGRSHPWYKREAIELPELVETPWVMRESGSGTQQRFEEALRNWGIDLRTLKVTLLLNTGEMVKAIIENSSAAAGISELMVQKELELGTLRSIRVIDTSGLYPRYLEFMRPFLKIKHRQRFQPRVCQVFEQML
>NZ_CP011304.1|WP_046663555.1|130984_131668_-|transporter
MTTMITAISTAIAAFIATNLDDILILTILFAQVNKLFRRRHIVIGQYLGFILLILASLTGFFGSFLIPAQWIRFLGLLPVIFGIRSLWQREETETDNPLEMAVGSAPSSPLLAWFSPQTCAVAAITIANGSDNIGIYLPLFASNTWQNLVTIVSVFLILVGVWCFTAHQLTKLPAIANLITSHGSHFVPCVLIGLGVFIIKESLPLAVLALSLSYGWALFQQQAESI
>NZ_CP011304.1|WP_046660546.1|142853_143780_+|RluA-family-pseudouridine-synthase
MNQLNLEVAGKKERLDAWMGSQLPDLSRSRLQKLIEQGYIQLNGQICTNKNTKVAQGDRLKITIPDSQPLQLSAEAIDLDILYEDEYLIIINKPADLVVHPAPGHESGTLVNALLHHCPNLAGIGGIQRPGIVHRLDKDTTGAIVIAKTDQAHQHLQAQLKTKTARREYMALVHGVPKSETGTIDLSIGRHRSERQKMAIITVEKGGRNAVTHWQVKERLGNYTLMEFRLETGRTHQIRVHSSHIGHPILGDPLYSSGRSIGINLPGQLLHAHRLILIHPVTGESLEAIAPLPAIFPKVLAILRQRNP
>NZ_CP011304.1|WP_046660547.1|143776_144778_-|saccharopine-dehydrogenase-like-oxidoreductase
MNKQIAGDRLRIGVLGFGGLGQAAARILAPKQEMLWTAAADKAGFAYHKDGLDVNTCNKIYHDQGSIGYLENYGSLSQNSIEELIKTADVEGYFLALPNLPNNFMADIAKTFIRLGWRGVLVDALKRTSAMEQILALQTDLEAAGITYMTGCGATPGLLTAAAALAAQSYAEIHSVKITFGVGIANWEAYRATIREDIAHLPGYNPETAHQMSDAEVEMLLNKTNGILSLENMEHADDIMLELAGICGRDRVSVGGVVDTRNPKKPLSTNVKVTGRTFEGKISTHTFTLGDETSMAANVCGPAFGYLKAGVSLHRRGIYGLWTAAEIMPQFVR
>NZ_CP011304.1|WP_002752708.1|145088_145304_+|DUF2997-domain-containing-protein
MSMESLEFIIYPDGRVMEKVTGIVGSSCQEVTAAIEAQLGQLMSQEKTSDYYHQTVSQSEKVSNAATFSDW
>NZ_CP011304.1|WP_002762644.1|145348_145735_+|DUF1257-domain-containing-protein
MSHFSNIKTKIRDLSYLKAALSDMGMEWKEGSHPVKGYQGQTLTAEVVIEQDNNYDIGFRWNGNEYELVADLQYWQQPLTVEGFLRKVNQGYAYHTILAETAKQGFQVAAQEKNTDGSIRLVVQRWSA
>NZ_CP011304.1|WP_046660548.1|145734_146142_+|ferredoxin
MADFSPERSGFEPELGGFLRDSPDRTGFEPELGGLLRQKAVYVDEVTCIGCKHCAHVAPNTFFIEGEYGRSRVYNQDGDEEEIIQEAIETCPVNCIHWVNYNQLSSLEEERKHQVIKQLGFPQIHKKFSPADLDL
>NZ_CP011304.1|WP_046660549.1|146257_146560_+|hypothetical-protein
MNTQLIDSLARIILSLSEEERELLNRKIESEQRENLQINAQILDLETRVKQYENQYRMSSEEFYPKFRSGELGDAMDYFEWNVYYEMLLAARKEISLRSN
>NZ_CP011304.1|WP_002794295.1|146560_146950_+|hypothetical-protein
MEIADYIRKVKRKLSESSIVNSFTIVDERILFDRGYFRARVLLTNGDFLEIAEAFTSIDQRIVTISYRYQWMDASKQKLRKRWDNVEHFPDLPNFPDHVHVGDELNVQPGESRNILQIITVIEREIEIL
>NZ_CP011304.1|WP_046660550.1|147217_147934_+|TrkA-family-potassium-uptake-protein
MYVLIGGAGMMGLGLAQQLLDLGHTVAIVDVDPLACRFAREKIGVMAFEGSAVSTKVLLEAGIRQAKAVVAALRDDAMNLALVTLSRSYGISHIVVRMCDREFLEAYRLAGASHIISTIDLAVATMANAIEYPEVESMMHFEQGQVEVLKLPVPKDCYVAGRTVAQIAQDANFPTGSLIIGYQCHTSASLEIPNGNTVLEAGSTILVVTRPEFVKPMIDYLGIQTNHRPRIEVSHPNL
>NZ_CP011304.1|WP_080949693.1|147890_149519_-|sodium:proton-antiporter
MRGELLVAWAAQQKSLDSSSAVNSQTVGDIPELVLILILLLLIATAVALITQRLRISYVAGLVLAGLPITDLLSRRIGLDPFLVLNLFLPILIFEAAINTDISRLRSTFKPIALLAGPGSVFSAAIIAVLVKFGLGLDWIPALLVGVILANTDTVSMIAVFKEIRVPSRLSTIVEGETLFNDAAALVTFNLLLVIYATGTISTTQVIKEVLIVALGGGLVGAVLGYLCLPIYVRLRDPLSSLLLTVALALGAFQLGQFLGVSGAVAVVIAGLVFGNLGLPRSASASDRITLISFWEYAGFIVNTFIFLLIGIEINPLTLWQTLPSIVLVILAYQLGRILSVYSLLWVLRRIDRPIPLRWQHILILGNIKGSLSMALAVAIPLTLTGRELIIELVFGAVLFSLVIQGLALPWLIKKLDISQVSAVTREIGQLQLQLIASKAAQDELANLLKSGVLPKAVYEELWASYQAKVAVSERVLRDAYNQSRSGQMEPKYGQLDAIRRRLFLAEKAALGDALRKRIVPEDLVQSYVKGLDEKLLSLDDD
>NZ_CP011304.1|WP_046660551.1|149838_150045_+|hypothetical-protein
MRIISIYLRGGNTSSDSGIILHYAMVDFYCLFWTFKGLACLETIAKSRLSLLAKPNTFANYPFFPEQR

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Crispr_ID: NZ_CP011304_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011304_2

455953-456066

TypeV

Consensus_repeat	Method
AATCTCTAATAGGGGTTAAGATTAATGGGAACGCTGTAGGGTT	CRISPRCasFinder

1 spacers

cas14j

The CRISPR arrays of NZ_CP011304_2

>merge|NZ_CP011304|2|455953-456066|CRISPRCasFinder
AATCTCTAATAGGGGTTAAGATTAATGGGAACGCTGTAGGGTTGATTCATGAATCAACCCTACAAAGTATTAATCTCTAATAGGGGTTAAGATTAATGGGAACGCTGTAGGGTT

>NZ_CP011304|2|2|455953-456066|CRISPRCasFinder
AATCTCTAATAGGGGTTAAGATTAATGGGAACGCTGTAGGGTT	GATTCATGAATCAACCCTACAAAGTATT
AATCTCTAATAGGGGTTAAGATTAATGGGAACGCTGTAGGGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011304.1\|WP_046660791.1\|456184_458062_-\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	unknown	unknown	gnl\|CDD\|273520
NZ_CP011304.1\|WP_016515715.1\|448700_448925_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046660794.1\|461113_462589_-\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_CP011304.1\|WP_046660793.1\|459459_460674_-\|transposase	cas14j	-	gnl\|CDD\|223747
NZ_CP011304.1\|WP_002744497.1\|464296_465376_+\|fructose-bisphosphate-aldolase-class-II	unknown	unknown	gnl\|CDD\|181691
NZ_CP011304.1\|WP_046660788.1\|453070_453865_+\|MlaE-family-lipid-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|215575
NZ_CP011304.1\|WP_046660789.1\|454062_455436_-\|TIGR03279-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|132322
NZ_CP011304.1\|WP_046660787.1\|451699_452884_-\|class-I-SAM-dependent-rRNA-methyltransferase	unknown	unknown	gnl\|CDD\|224017
NZ_CP011304.1\|WP_046660785.1\|448928_451241_+\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|226581
NZ_CP011304.1\|WP_046660796.1\|465567_466806_+\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|272970
NZ_CP011304.1\|WP_046660792.1\|458139_459324_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP011304.1\|WP_045359780.1\|448447_448720_+\|BrnT-family-toxin	unknown	unknown	gnl\|CDD\|367913
NZ_CP011304.1\|WP_046660784.1\|447767_448001_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046663577.1\|469116_470304_-\|FtsW/RodA/SpoVE-family-cell-cycle-protein	unknown	unknown	gnl\|CDD\|279444
NZ_CP011304.1\|WP_046660798.1\|470375_471320_-\|isoaspartyl-peptidase	unknown	unknown	gnl\|CDD\|271340
NZ_CP011304.1\|WP_046660790.1\|455541_455874_-\|DUF4164-family-protein	unknown	unknown	gnl\|CDD\|372702
NZ_CP011304.1\|WP_046660783.1\|446567_447533_+\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NZ_CP011304.1\|WP_046660797.1\|467238_468543_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380569
NZ_CP011304.1\|WP_046660786.1\|451322_451733_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319925
NZ_CP011304.1\|WP_046660795.1\|463036_464164_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|224370

Protein	Function_ID	Function_description	E-value
NZ_CP011304.1\|WP_046660791.1\|456184_458062_-\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP011304.1\|WP_046660794.1\|461113_462589_-\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_CP011304.1\|WP_046660793.1\|459459_460674_-\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.51424e-29
NZ_CP011304.1\|WP_002744497.1\|464296_465376_+\|fructose-bisphosphate-aldolase-class-II	gnl\|CDD\|181691	PRK09196, PRK09196, fructose-bisphosphate aldolase class II.	0
NZ_CP011304.1\|WP_046660788.1\|453070_453865_+\|MlaE-family-lipid-ABC-transporter-permease-subunit	gnl\|CDD\|215575	PLN03100, PLN03100, Permease subunit of ER-derived-lipid transporter; Provisional.	5.39794e-107
NZ_CP011304.1\|WP_046660789.1\|454062_455436_-\|TIGR03279-family-radical-SAM-protein	gnl\|CDD\|132322	TIGR03279, cyano_FeS_chp, putative radical SAM enzyme, TIGR03279 family. Members of this protein family are predicted radical SAM enzymes of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.	0
NZ_CP011304.1\|WP_046660787.1\|451699_452884_-\|class-I-SAM-dependent-rRNA-methyltransferase	gnl\|CDD\|224017	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only].	4.87197e-118
NZ_CP011304.1\|WP_046660785.1\|448928_451241_+\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|226581	COG4096, HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	2.70562e-106
NZ_CP011304.1\|WP_046660796.1\|465567_466806_+\|PDZ-domain-containing-protein	gnl\|CDD\|272970	TIGR00225, Tail-specific_protease, C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database. [Protein fate, Degradation of proteins, peptides, and glycopeptides, Protein fate, Protein modification and repair].	9.16946e-140
NZ_CP011304.1\|WP_046660790.1\|455541_455874_-\|DUF4164-family-protein	gnl\|CDD\|372702	pfam13747, DUF4164, Domain of unknown function (DUF4164). This is a family of short, approx 100 residue-long, bacterial proteins of unknown function. There is several conserved LE/LD sequence pairs.	1.09249e-07
NZ_CP011304.1\|WP_045359780.1\|448447_448720_+\|BrnT-family-toxin	gnl\|CDD\|367913	pfam04365, BrnT_toxin, Ribonuclease toxin, BrnT, of type II toxin-antitoxin system. BrnT is a ribonuclease toxin of a type II toxin-antitoxin system that exhibits a RelE-like fold. The antitoxin that neutralizes this toxin is pfam14384. BrnT is found in bacteria, archaea, bacteriophage, and plasmids. BrnT-BrnA forms a 2:2 tetrameric complex and autoregulates its own expression, which is induced by a number of different environmental stresses. Expression of BrnT alone results in cessation of bacterial growth which can be rescued after subsequent expression of BrnA.	7.52161e-27
NZ_CP011304.1\|WP_046663577.1\|469116_470304_-\|FtsW/RodA/SpoVE-family-cell-cycle-protein	gnl\|CDD\|279444	pfam01098, FTSW_RODA_SPOVE, Cell cycle protein. This entry includes the following members; FtsW, RodA, SpoVE.	1.54113e-102
NZ_CP011304.1\|WP_046660798.1\|470375_471320_-\|isoaspartyl-peptidase	gnl\|CDD\|271340	cd14949, Asparaginase_2_like_3, Uncharacterized bacterial subfamily of the L-Asparaginase type 2-like enzymes, an Ntn-hydrolase family. The wider family of Asparaginase 2-like enzymes includes Glycosylasparaginase, Taspase 1, and L-Asparaginase type 2. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoprotein. Taspase1 catalyzes the cleavage of the Mix Lineage Leukemia (MLL) nuclear protein and transcription factor TFIIA. L-Asparaginase type 2 hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzymes of this family undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.	1.37619e-154
NZ_CP011304.1\|WP_046660792.1\|458139_459324_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.93267e-22
NZ_CP011304.1\|WP_046660783.1\|446567_447533_+\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.3091e-41
NZ_CP011304.1\|WP_046660797.1\|467238_468543_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380569	cd06346, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.	7.99502e-112
NZ_CP011304.1\|WP_046660786.1\|451322_451733_+\|VOC-family-protein	gnl\|CDD\|319925	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	4.43517e-37
NZ_CP011304.1\|WP_046660795.1\|463036_464164_+\|aldo/keto-reductase	gnl\|CDD\|224370	COG1453, COG1453, Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only].	4.88108e-142

>NZ_CP011304.1|WP_046660790.1|455541_455874_-|DUF4164-family-protein
MANETVTYSLEAVLTRIEGKIDSLEKRIDERFDKVDERFDKIEERLTKVEIGQVELKGEIKALDQRLTTEIKGLTARVAYQEFTNRGILIALVVAILGGAAKLFGFFPNP
>NZ_CP011304.1|WP_046660789.1|454062_455436_-|TIGR03279-family-radical-SAM-protein
MSELTIRPAKISGVIPDSIAAEVGFEIGDSLVSINGNRPRDLIDYQFLCADEFLTLEVLDSQGKTHQVKIEKDYHEDLGLEFETALFDGLIQCNNKCPFCFIDQQPEGKRETLYYKDDDYRLSFLYGSYLTLTNLTSKEWQRIEKMRISPLFVSVHATEPDLRIRLLKNPRAGQILDHLKWLQARQLQIHAQVVVCPNINDGIHLERTLLDLVSFHRGDIPCVESIAVVPVGLTRFRPQEDELIPVSQEKAREVIEQVQTLQKKFRQEFGSNVVWLADEWFLIARVDLPPQSHYEDYPQIGNGVGSIRQFIRDFQKTAKKLLPAQISPSRRLIWVVGNAVEQAFQPLVKQLNKVQGLTVELVALNSDYWGQEITVTGLLTGQDILKGLQGKNLGDGVLLPSLMLKHGEAVFLDDLTLETVINQLGVPIYPVLGVEELIKTCLALNPFSDFLSHIGEQ
>NZ_CP011304.1|WP_046660788.1|453070_453865_+|MlaE-family-lipid-ABC-transporter-permease-subunit
MPRKSDAASGLSLWFQRLGAAGLLAGQTFLHILNGKIHRRNTLEQMSIVGPESLTIALITAAFVGMVFTIQVAREFIFFGAGSFVGGVLSLALTRELAPVLTAVVVAGRVGSAFAAEIGTMRVTEQIDALYILKTDPIDYLVIPRVIACSLMLPLLTIISLVTGLLGGLFISDSLYGISYSLFLQSAQNFMETWDLISSMLKSLIFGVLIAIIGCSWGLTTTGGAKGVGQSTTTAVVTSLLAIFVANFFLSWLMFQGTGNAEIG
>NZ_CP011304.1|WP_046660787.1|451699_452884_-|class-I-SAM-dependent-rRNA-methyltransferase
MPDLAKIILKNHKIDAVKRFHPWIFSGAIKEMEGEVKEGAIVEVYSDRGEYLATGLYNPSNIAVKILSFQKVSDIAQLFLEKFQNAYRLRQQIGLVDNPKTNCYRLINAEGDGLPSLIVDWYNGTAVIQAYSLALYQRLDLIVDCLKTIYADNLRAVYDKSAAVLAKSAHISENKYLFGQKTSDEVLESGHRFIIDWEKGQKTGFFLDQRENRALLSQYSHNKRVLNTFSYSGGFSVYAMQAGAALVDSVDSSHGAIDLTEKNIALNNLSQVPHQSYSADVFNFLRDCQEDYDLIVLDPPAFAKSIQSRHQAVMAYKRLNYQAFQKIRPQGIIFTFSCSQVVNEEHFQGAVMAAAIESARPVRILARLSQPADHPTSIYHSEGSYLKGLVLAVD
>NZ_CP011304.1|WP_046660786.1|451322_451733_+|VOC-family-protein
MNNPPDSPFNYTEAFIALGTSNFDRSVQFYRQLLQQEPSPYLAAVYAEFRLINLKLGLFCPKESHREEFGDSRGSGMSICFEVESLEKAIEHWSEIGYGARGEISQASHGSEIYIYDPDGNRLIFHQSTAKTNPFR
>NZ_CP011304.1|WP_046660785.1|448928_451241_+|DEAD/DEAH-box-helicase-family-protein
MNEAETRAELIDPALKAAGWGVIPDSKIRREVIAPGRLVGSGQRSSSKTCDYVLVYRGHKLATLEAKKRDAHPTEGLGQAKDYAERLQTPFALCTNGLRIYRVDTRAGKEGYIDRYPTQEELWAATYPDSNHWRDRFATVPPDNKSGMRESRYYQHNAIQAVLEAIAAGQKRMLLTMATGTGKTTIALQIAWKLFHSSWNLSGEPTHRPCILFLTDRNILANQALTEFTAFPEDALVRIEPKNIQKTKKVPKNGSVFFSIFQTFMTQNGEELAPNFLEYAPDFFDLVIVDECHRGGANDESTWRKILEYFAPAVQLGLTATPKRDLNGDTYKYFGEPLYTYSLKEGINEGYLTPFKVVEFTTSLDEYQYDPDDELIEGDIDENKVYTESDFNRIIEIEERERQRVKIFMEAIDQNEKTLVFCANQDHALAIRDLINQMAISSDPNYCARVTANDGSLGETHLKKFQDNEKRLPTILTTSRKLSTGVDARNLRNIVLLRPVKSMIEFKQIIGRGTRLFDNKDYFTIYDFVKAHENFNDPEWDGEPQEPVVIDPRPRPEPPDAIEDPLDEPDPLPIRQKIKIKLADGKERELEHTQRTTFWNADGKPISAEEFIQQLFGDIPDLFQDEAELRHLWGRPDTRKSLLTGLAEKGYGEEQLQAIARITNTENSDIYDVLTYIAYAARPLTREERVIKHKDLIFSKYTRKQREFLDFILDQYIRSGVGELDREKLPKLIEIKYHTINEAISQLGEIQEISGVFMSFHAYLYWSDAA
>NZ_CP011304.1|WP_016515715.1|448700_448925_+|hypothetical-protein
MKAEEFDAKFDAGEDMSEFLDFSTARRPNREKQKIELDLPFWIIRKLEAEAQKEGVSTQTFLENYLARHIASAP
>NZ_CP011304.1|WP_045359780.1|448447_448720_+|BrnT-family-toxin
MPSFEYDENKSKTNQQKHGIDFIEAQKLWEDDNLLEITGKSETEPRYLIIGQVQDKHWTAVITYRSEMIRIISVRRSRTNEVTWYESRRI
>NZ_CP011304.1|WP_046660784.1|447767_448001_+|hypothetical-protein
MIIQKIIDELHEIPEDHLSQIYEIVRSFRLELERERSHNPDDTPDEEIVANLKQGMQEALGGNTIPLDRMWEGIDVD
>NZ_CP011304.1|WP_046660783.1|446567_447533_+|IS630-family-transposase
MKPYSLDLRQKIIETYEENNLSQRELAKRFRVALSFIQKLIKQWRETGNLNPRPHGGGQKLKLKSDEIILLGDLVQEKKDATLDELRKQIEEKTQTVVSNSTISRILKRLNLTQKKSLHARERDTERVQKLREEYWEKIRDVRAEDLVFVDESGSNLGMTRLYGRAEKGQRVYDSVPLNRGKNVTIIGAIALKGLLAFINVFGAANGLIFEAFIATLLVPNLWKGACVLMDNASIHQKETLEPILQEVGARLEFLPPYSPDFSPIENCWSKVKILIRSMSPRTYADLEKAIVQAFSQITLRDIHHWFTHCCYCDTPFKEPT
>NZ_CP011304.1|WP_046660791.1|456184_458062_-|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein
MSIKSKPPSQSRLIGNVLLAVGGLFLIVNLLFPQLFGPSVPKVPYSLFIDQVEDGNVARVSVGQNEIRYQLKNDQEGNYGRIFSTTPIFDLELPKRLEAKGVEFAAAPPPKNGWIGSVLSWVIPPLIFVGIWQFFLARSGGGGPAGALSITKSRAKVYVEGDTTKTTFEDVAGVEEAKTELAEIVEFLKYPQRYIQIGARIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVELFVGAGAARVRDLFEQAKKKAPCIIFIDELDAIGKSRANGNFMGGNDEREQTLNQLLTEMDGFNAGDATVIVLAATNRPETLDPALLRPGRFDRQVLVDRPDLAGRLKILEIYAGKVKLGSDVDLKQIATRTPGFAGADLANLVNEAALLAARNQRSTVAQEDFNEAIERVVAGLEKKSRVLSEKEKKIVAYHEVGHALVGAVMPGGGKVAKISIVPRGMAALGYTLQMPTEDRFLMDDTELRDQIATLLGGRAAEEIIFGSITTGAANDLQRATDLAERMVTTYGMSKTLGPLAYEKGQQNSFLGDGMMNPRRLVSDDTAKAIDNEVKEIVENGHQQALDILAQNRDLLEEIAQEILSKEVIEGEQLQALLERVKPLDREPVTV
>NZ_CP011304.1|WP_046660792.1|458139_459324_-|tetratricopeptide-repeat-protein
MQGLLRKLWRAIENFFTRLLGGQEGKGKVQAIESVPLTDTDYEFLYMQLLDGVSHGWHEGRILRFFEKLGDRGRQKDWVEWLERFGTRLQSSASLNQLLASRMIRLGELARAFPGIERIGEASYEIGYQLYTKETATLIWEYAGEDEAPGSYSLPQPPENLLYSGETSDFNGNDPENPQLETLTLDELFNRLQNDPTLAGQMAEQLGIENKDAESIIDSLIAQFSPQEAKTPETAEDWFNQGLEQANLGNWSNAIADWEQALTIDPQLASAWHNRGGALAMIGNYEEALNSYDRALEITPNDHQVINARGSALYGLQRWQEALECWQQVLEADDNFYQAWYNRGSTLENLGETQAAIACYQKALGIAPDFELAQTRLEALLGQKPPEDDGNPPA
>NZ_CP011304.1|WP_046660793.1|459459_460674_-|transposase
MITLTYQYKLKVNKKQEREIVHILDVCKSVYNYALSERKDWLNSRKCLADRCSLVSEYIIPADQPYPNYFVQAKNLTEAKKVDPILKTVNAQVLQQVLKTVDKAFDHIKSKGFGFPRFKKKMRSFVFPALSKNFLGDEYLNFPQLGKIRIRKSREYPSGFEPKQARIIQKASGFYVLVSFQSTELVPDMTVGKTCLGIDAGIESFVATSRGDLIKAPRFLLKVQSKLKLLQRRLKHQVKGSKNWLKLQDKIARLHEKVSNTRRDWHFKLAHYLCDLADNIFVEDINFVSWSRGIVRKQSLDSGIGSFINEILPFVAWKRGKYYLKVDKNGTSQECPNCGAITGKKALSERVHRCDSCGHIEPRDTASAKVIENRGKNAVGLTVLENARGGDLTGIDWVKLGRSS
>NZ_CP011304.1|WP_046660794.1|461113_462589_-|leucyl-aminopeptidase
MDIRSTDTSLLTWTGDTLALGLPEGAVEIAGELAELNNKLGGTLEELISETEFEGKLGSSAATRLGGGGPIRKLILVGLGKTADFDLQTLRLAAAAIARLAKQQKSQALAISLPVVGDQSATAGAITEGLLLANHQDTRFKSTKEEKGAKLATVELLGLGEQSSAIAKAEQICSGVILARELVNAPANTVTPLTMAETAEQIAAEYGLSLNILEQEECESLGMGAFLGVAKASDIPPKFIHLIYKPQGNPKRKLAIVGKSLTFDSGGLNIKGAGSGIETMKMDMGGGAATLGAAKAIAQLRPEVEVHFICPATENMISGRAMHPGDILTASNGKTIEVNNTDAEGRLTLADGLVFAEKLEVDAIVDLATLTGACVVALGEDIAGLWSSDESLGDQLQEAAKLAGEKFWPMPLEEKYFEGMKSQIADMKNTGPRPGGSITAALFLKQFIDNTPWLHLDIAGPVWSDKENGVNNSGATGFPVRTLVNWVMANN
>NZ_CP011304.1|WP_046660795.1|463036_464164_+|aldo/keto-reductase
MRYRRFGRTNWQFSLFSLGTMRCLSSESVFAATLDRALELGINHLETARGYGNSEVFLGRYLQRQGVRERVYLTTKLVPTPDRQTMEKAIAESLERLQLNHLDCLAIHGINTREHLNWIKDPQGCMKAVFLAQEAGKIGHIGFSTHAPLEIILETINTDFFAFVNIHYYFFWQRQQPAIALAQAKDMGVFIISPADKGGGLHRPPKKLEELCAPFSPLELNYRFLLSDPRITTLSVGAAIPEELESIINVCERDQPLDAAEIAVFKRLEAHLTDKLATDLCSQCYQCLPCPENINIPEVLRLRNLAVAYEMTDFGQYRYQMLENAGHWFPGRKANNCTECGDCLPRCPEKLPIPRLLFDTHELLNGPPQRRLWSS
>NZ_CP011304.1|WP_002744497.1|464296_465376_+|fructose-bisphosphate-aldolase-class-II
MALVPMRLLLDHAAENGYGIPAFNVNNMEQIQAIMQAAAATDSPVILQASRGARKYAGENFLRHLITAAVETYPHIPIVMHQDHGNEPATCYSAIRNGFTSVMMDGSLEADAKTPATYEYNVNVTAEVVKVAHSIGASVEGELGCLGSLETGKGEAEDGHGFEGELDHSMLLTDPDEAVDFVERTQVDALAVAIGTSHGAYKFTRKPTGEILAISRIEEIHNRLPNTHLVMHGSSSVPEDLLELINQFGGAIPETYGVPVEEIQKGIKSGVRKINIDTDCRLAITAAVREALFSNPKEFDPRFFLKPSITYMQKVCADRYQQFGTAGNASKIKQMSLDDYAAKYAKGQLTQVSKKVVAV
>NZ_CP011304.1|WP_046660796.1|465567_466806_+|PDZ-domain-containing-protein
MRKKSLWAGLLVGFWFCLTWMAWTPTAAAFSEEQKLLLQSWRLVNQSYYDDTFNHQNWWQVREQFIKKPLNDRTAAYNAIEQMLATLDEPFTRLLRPDQYHNLQISTTGELSGVGLQININPDNGYLEVVAPLAGSPAEAAGLTSHDRILFIDGIDTTTLTLDAAAAKMRGTAGTEVSLVILPYQKSQPKTLSLTRQRISLSPVVAVLDKNSSSLPIGYVRLNQFSANAAKEVSEAVTNLQKQGAKGYILDLRNNPGGLLQAGIEIARMWINQGTIVYTVNREGIADSFAAAGNALTDAPLVVLVNQGTASASEILAGALQDNQRGVLVGEKTFGKGLIQSLFELPDGAGLAITVAKYETPAHHDIHKLGIMPDQVVAQEPITYQEIGTEKDSQYQTAIQFLNQNTVLAKAS
>NZ_CP011304.1|WP_046660797.1|467238_468543_+|ABC-transporter-substrate-binding-protein
MQRYIRSPLALTLSISLLANFLTACNNAQTPDNTASSPTTTTPGDQGLKLGALLPITGDLAAIGQNMPEASALAVETINACGGVNGKPVTLVKEDDQTDPAAGASAMTKLAEVDKVAGVIGSFASSVSGAAVDVAVRKKVMLVSPGSTSPVFTDRAKKGDFKGFWARTAPPDTYQAQALAVLAKKKGFQNVATVVINNDYGVGFEREFVSAFDKLGGTITNKQNPVRYDPKAATLDSEAAAAFANQPDAVAAVLYAETGSLLLQAAYKQGLTKGVTVLLTDGVYSEDFTKQVGKGTDGKSIIAGALGTVPGADGQALRAFTSLWKEKTGKDVTAFVPHTWDAAILLMLAAEAAKSNTGEGIQSKIREVANGPGTEVTDACQAMEMIRKGEDINYQGASGNVDIDENGDVVGSYDVWTVKDDGTLKVIDKVTPNQ
>NZ_CP011304.1|WP_046663577.1|469116_470304_-|FtsW/RodA/SpoVE-family-cell-cycle-protein
MWQYIIPIFDPDVKNWSAEARLLRWMTFLWLSVGLVVLFSASYALADSRFDNGLYYFIRQLIWLWIGLIGFNFLVRLPIEKLLKIAPWMILLVLGLILITLIPGLGANINGATRWIKIGPILLQPSEFMKPFLVLQGAAVFGGWPRLNVNQRLTWIAIFGLILAGILLQPNLSTTALCGITLWLIALASGLPLSYMTSTALLGLTMAVVSVTFREYQRKRILSFLDPWQDPRGDGYQLVQSLLAIGSGGTTGSGYGLSQQKLFYLPFPDTDFIFAVFGEEFGFIGGILLLIMLFLYATLALIVAVKCRHRIKKLVAIGAMVILIGQSLLNMGVATGSLPTTGLPFPLFSYGGSSSLASLFLAALLIRVAREENDPDPVPTSKKSPQKTVSVFSHQ
>NZ_CP011304.1|WP_046660798.1|470375_471320_-|isoaspartyl-peptidase
MTRVNPKLIIHGGASSLEDKGGLESVRDSLRGIVKNIYNLLDNGASAVEAVTKGCMLLEDEPRFNAGTGSVVQSDGQVRMSAALMDGRHQRLSGVINVSRVQNPISLAQFLQSQEDRILSEIGAADLARELQIPLYDPLTDYRIQEWMEERKTNFNRKMARLFADSSARRGTIGVVALDQQGDIAAGTSTGGKGLERIGRVSDSAMPAGNYANPWAGVSCTGVGEDIIDECLAAKVVIRVTDGFSLAAAVEKSMHESQTNGRDLGMISLDRQGNIVWGKTAEILLAAYHDGQAIGDTLEWHGENAGLIGHVAVG

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Crispr_ID: NZ_CP011304_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011304_3

507958-508044

Orphan

Consensus_repeat	Method
CAGTAAACAGTAATCGGTGCAAAGACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011304_3

>merge|NZ_CP011304|3|507958-508044|CRISPRCasFinder
CAGTTAAAAGTAATCAGTAAACAGTAATCGGTGCAAAGACAGCAGAAAACTGCCATAATCAGTAAACAGTAAACAGTAAACAGTAAT

>NZ_CP011304|3|3|507958-508044|CRISPRCasFinder
CAGTTAAAAGTAATCAGTAAACAGTAAT	CGGTGCAAAGACAGCAGAAAACTGCCATAAT
CAGTAAACAGTAAACAGTAAACAGTAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011304.1\|WP_046660825.1\|511053_512232_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NZ_CP011304.1\|WP_046660827.1\|514496_516536_-\|biosynthetic-arginine-decarboxylase	unknown	unknown	gnl\|CDD\|235427
NZ_CP011304.1\|WP_004162555.1\|519654_520074_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240038
NZ_CP011304.1\|WP_046660817.1\|497770_498781_-\|adenosine-deaminase	unknown	unknown	gnl\|CDD\|372662
NZ_CP011304.1\|WP_046660821.1\|504481_505348_-\|response-regulator	unknown	unknown	gnl\|CDD\|381085
NZ_CP011304.1\|WP_046660824.1\|508511_509198_-\|N-acetylmannosamine-6-phosphate-2-epimerase	unknown	unknown	gnl\|CDD\|234907
NZ_CP011304.1\|WP_046660823.1\|508150_508474_+\|DUF4164-family-protein	unknown	unknown	gnl\|CDD\|372702
NZ_CP011304.1\|WP_002732961.1\|509314_509824_-\|inorganic-diphosphatase	unknown	unknown	gnl\|CDD\|376376
NZ_CP011304.1\|WP_016517018.1\|500100_500901_-\|carbon-dioxide-concentrating-mechanism-protein	unknown	unknown	gnl\|CDD\|226943
NZ_CP011304.1\|WP_046660828.1\|516676_517210_+\|DUF4330-domain-containing-protein	unknown	unknown	gnl\|CDD\|379510
NZ_CP011304.1\|WP_043999193.1\|517352_517943_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NZ_CP011304.1\|WP_046660819.1\|502467_503505_+\|polysaccharide-pyruvyl-transferase-CsaB	unknown	unknown	gnl\|CDD\|132648
NZ_CP011304.1\|WP_046660818.1\|501114_502194_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376004
NZ_CP011304.1\|WP_046660820.1\|503510_504134_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|335717
NZ_CP011304.1\|WP_052734155.1\|518186_519554_-\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|272970
NZ_CP011304.1\|WP_046660826.1\|512403_514419_-\|VacB/RNase-II-family-3'-5'-exoribonuclease	unknown	unknown	gnl\|CDD\|223631
NZ_CP011304.1\|WP_002752661.1\|504194_504485_-\|KaiB-1	unknown	unknown	gnl\|CDD\|239276
NZ_CP011304.1\|WP_002760653.1\|497303_497513_-\|DUF2281-domain-containing-protein	unknown	unknown	gnl\|CDD\|378366
NZ_CP011304.1\|WP_046660822.1\|505643_507845_-\|DUF839-domain-containing-protein	unknown	unknown	gnl\|CDD\|225752
NZ_CP011304.1\|WP_046660816.1\|496896_497319_-\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|366841

Protein	Function_ID	Function_description	E-value
NZ_CP011304.1\|WP_046660825.1\|511053_512232_-\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	2.28416e-51
NZ_CP011304.1\|WP_046660827.1\|514496_516536_-\|biosynthetic-arginine-decarboxylase	gnl\|CDD\|235427	PRK05354, PRK05354, biosynthetic arginine decarboxylase.	0
NZ_CP011304.1\|WP_004162555.1\|519654_520074_-\|NUDIX-domain-containing-protein	gnl\|CDD\|240038	cd04682, Nudix_Hydrolase_23, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.27463e-32
NZ_CP011304.1\|WP_046660817.1\|497770_498781_-\|adenosine-deaminase	gnl\|CDD\|372662	pfam13651, EcoRI_methylase, Adenine-specific methyltransferase EcoRI. This methylase recognizes the double-stranded sequence GAATTC, causes specific methylation on A-3 on both strands, and protects the DNA from cleavage by the EcoRI endonuclease.	3.36585e-177
NZ_CP011304.1\|WP_046660821.1\|504481_505348_-\|response-regulator	gnl\|CDD\|381085	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs). Two-component systems (TCSs) involving a sensor and a response regulator are used by bacteria to adapt to changing environments. Processes regulated by two-component systems in bacteria include sporulation, pathogenicity, virulence, chemotaxis, and membrane transport. Response regulators (RRs) share the common phosphoacceptor REC domain and different effector/output domains such as DNA, RNA, ligand-binding, protein-binding, or enzymatic domains. Response regulators regulate transcription, post-transcription or post-translation, or have functions such as methylesterases, adenylate or diguanylate cyclase, c-di-GMP-specific phosphodiesterases, histidine kinases, serine/threonine protein kinases, and protein phosphatases, depending on their output domains. The function of some output domains are still unknown. TCSs are found in all three domains of life - bacteria, archaea, and eukaryotes, however, the presence and abundance of particular RRs vary between the lineages. Archaea encode very few RRs with DNA-binding output domains; most are stand-alone REC domains. Among eukaryotes, TCSs are found primarily in protozoa, fungi, algae, and green plants. REC domains function as phosphorylation-mediated switches within RRs, but some also transfer phosphoryl groups in multistep phosphorelays.	4.6923e-17
NZ_CP011304.1\|WP_046660824.1\|508511_509198_-\|N-acetylmannosamine-6-phosphate-2-epimerase	gnl\|CDD\|234907	PRK01130, PRK01130, putative N-acetylmannosamine-6-phosphate 2-epimerase.	1.70163e-115
NZ_CP011304.1\|WP_046660823.1\|508150_508474_+\|DUF4164-family-protein	gnl\|CDD\|372702	pfam13747, DUF4164, Domain of unknown function (DUF4164). This is a family of short, approx 100 residue-long, bacterial proteins of unknown function. There is several conserved LE/LD sequence pairs.	1.79074e-05
NZ_CP011304.1\|WP_002732961.1\|509314_509824_-\|inorganic-diphosphatase	gnl\|CDD\|376376	pfam00719, Pyrophosphatase, Inorganic pyrophosphatase.	3.09675e-83
NZ_CP011304.1\|WP_016517018.1\|500100_500901_-\|carbon-dioxide-concentrating-mechanism-protein	gnl\|CDD\|226943	COG4577, CcmK, Carbon dioxide concentrating mechanism/carboxysome shell protein [Secondary metabolites biosynthesis, transport, and catabolism / Energy production and conversion].	1.08053e-46
NZ_CP011304.1\|WP_046660828.1\|516676_517210_+\|DUF4330-domain-containing-protein	gnl\|CDD\|379510	pfam14221, DUF4330, Domain of unknown function (DUF4330). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 165 and 177 amino acids in length. There is a single completely conserved residue G that may be functionally important.	3.90602e-73
NZ_CP011304.1\|WP_043999193.1\|517352_517943_+\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	2.54906e-119
NZ_CP011304.1\|WP_046660819.1\|502467_503505_+\|polysaccharide-pyruvyl-transferase-CsaB	gnl\|CDD\|132648	TIGR03609, S_layer_CsaB, polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395). [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking].	3.38084e-144
NZ_CP011304.1\|WP_046660818.1\|501114_502194_+\|hypothetical-protein	gnl\|CDD\|376004	pfam18578, Raf1_N, Rubisco accumulation factor 1 alpha helical domain. This is the N-terminal alpha helical domain found in Rubisco accumulation factor1 (Raf1). Raf1 from Arabidopsis thaliana consists of an N-terminal alpha-domain, a flexible linker segment and a C-terminal beta-sheet domain that mediates dimerization. The alpha-domains mediate the majority of functionally important contacts with RbcL (Rubisco large subunits) by bracketing each RbcL dimer at the top and bottom. The alpha-domain alone is essentially inactive.	2.71683e-58
NZ_CP011304.1\|WP_046660820.1\|503510_504134_+\|hypothetical-protein	gnl\|CDD\|335717	pfam04313, HSDR_N, Type I restriction enzyme R protein N-terminus (HSDR_N). This family consists of a number of N terminal regions found in type I restriction enzyme R (HSDR) proteins. Restriction and modification (R/M) systems are found in a wide variety of prokaryotes and are thought to protect the host bacterium from the uptake of foreign DNA. Type I restriction and modification systems are encoded by three genes: hsdR, hsdM, and hsdS. The three polypeptides, HsdR, HsdM, and HsdS, often assemble to give an enzyme (R2M2S1) that modifies hemimethylated DNA and restricts unmethylated DNA.	0.000889924
NZ_CP011304.1\|WP_052734155.1\|518186_519554_-\|PDZ-domain-containing-protein	gnl\|CDD\|272970	TIGR00225, Tail-specific_protease, C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database. [Protein fate, Degradation of proteins, peptides, and glycopeptides, Protein fate, Protein modification and repair].	3.595e-138
NZ_CP011304.1\|WP_046660826.1\|512403_514419_-\|VacB/RNase-II-family-3'-5'-exoribonuclease	gnl\|CDD\|223631	COG0557, VacB, Exoribonuclease R [Transcription].	3.18467e-132
NZ_CP011304.1\|WP_002752661.1\|504194_504485_-\|KaiB-1	gnl\|CDD\|239276	cd02978, KaiB_like, KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensory domain with a TRX fold which is involved in the SasA-KaiC interaction. This domain shows high sequence similarity with KaiB. However, the KaiB structure does not show a classical TRX fold. The N-terminal half of KaiB shares the same beta-alpha-beta topology as TRX, but the topology of its C-terminal half diverges.	2.65846e-30
NZ_CP011304.1\|WP_002760653.1\|497303_497513_-\|DUF2281-domain-containing-protein	gnl\|CDD\|378366	pfam10047, DUF2281, Protein of unknown function (DUF2281). Members of this family of hypothetical bacterial proteins have no known function.	1.22607e-08
NZ_CP011304.1\|WP_046660822.1\|505643_507845_-\|DUF839-domain-containing-protein	gnl\|CDD\|225752	COG3211, PhoX, Predicted phosphatase [General function prediction only].	2.8503e-98
NZ_CP011304.1\|WP_046660816.1\|496896_497319_-\|PIN-domain-containing-protein	gnl\|CDD\|366841	pfam01850, PIN, PIN domain.	4.42414e-12

>NZ_CP011304.1|WP_046660822.1|505643_507845_-|DUF839-domain-containing-protein
MSISRRNFLTFLTATAGVSFFSLQEKKYSSLISSPAIAANSFGLNFAPVKLPIPLKIDGMSDESQKNAYQTYKVLDDLVLPQGFTSDVLAQWGDAVGDSRFGYNNDYLSFIETSAGQGYLTVNFEYISGRTWLQTFEQVIGKTLPVKEVREKTNEKGEIAAYRLQDASLKAKIEEISLEGLIDQGIGVISLAKDQTGKWQRTYSKADRRITGISGLKDGRYLKATGPAVAIFTKTDKLGYDDGLGAKIIGTFQNCAGGTTPWGTVFSAEENFQDQVTEVVLKDGSSLHPDTTPFILNSGEVDGRGNVFGLAGNKYGWMVEVDPANPDDYGTKHTWLGRFRHEAVAFLAQTGQPLAVYSGCDRRGGHIYKFVSEGKISDIKAKNNSKLLEKGMLYGAKFNPDKTGYWIPLNPDTEINPVLPSQIAASRGDGVVALPNPERTVNDNQLLLFKDDEEILAYKAKYKTLADLYEGNGTEKQGAILIDAHFAANAVGVTCTGRPEDTEVDENGTLYITFTSGSPSEAEGGADKEIFKGPNGEIPYEFGWIISLREDNNDAASLSFRWDVVAYGGEPTEKGEGFSNPDNLAFDKQGNLWMVSDISTGGLNREMKTRYPQGVPVSQRDLLGIFGNNSAWVFAKGQEHPYPFAIAPMDAELTGLYFTPDQETLFLAVQHPGEAGGIRRDLAFENRKFALKTTNGQEFEQIRQVPLGSNWPSGQVNQPPRPAVVAIRRIESK
>NZ_CP011304.1|WP_046660821.1|504481_505348_-|response-regulator
MTRDLCRILLIEDEPTTVKLIQRLLLKAPQCSLAKGLTFTLTQAQDLEETAEKLAGEKFDLILLSLEISVPPGLNILVKTRELASDIPIVVQTTSNDEKLVVKAFQLGADGYIQLNNIDSSLLVYQIRVAIERQQYILNLKHQQQEEEFRELEQLIKGVQTSITAKMFGSEAIRQSIPDIFQELVQNYGELLDLALEEQAYKVEHNLSERLRSLADKLGFLKASPRDVVDIHTTTLRQKNQDVTLAKAQAYVSEGRLMVLELMGYLVSFYRKYYIGLSNIKLFNNTQS
>NZ_CP011304.1|WP_002752661.1|504194_504485_-|KaiB-1
MSQYLLKLYIMGDSSKSQRAIANIFRICREELSDLYTVEIIDVLEQPQLAEQDKILVTPTLVKQLPPPLQRIIGDMSNTQKVLLGLDVIPKDSHLN
>NZ_CP011304.1|WP_046660820.1|503510_504134_+|hypothetical-protein
MSSAITEAITTIALDETRFNLSLTEDGAFFPEWKSDLLALSSHEKKSLDELIQKYLYQRSAGQLLEETVTLLLVSPLLAIAGFYDPPLRVRAEESVSLTVDDGEEILSGRIDVLVWLNQFWVVIVESKKTALSVWTALPQTLAYLMANPRTEKPGFALVTNGDDILLVKLRANAHHYALSRVFAPFISREELYRVLQIFKHIGAAIK
>NZ_CP011304.1|WP_046660819.1|502467_503505_+|polysaccharide-pyruvyl-transferase-CsaB
MRAVICGYYGRGNGGDEALLVSLLQMLPSAIKPIVLSNNPRETSQRYGVETCPSRDWWQIFQTLKKADVFIWGGGSLMQDVTSFASPIYYGGLMALAQLLGLKTIAWGQGIGPLNRPFTRWLTKKVLKQCSLVTVRDDASAHLVADWGISPIVAPDPVWALDAQSVKGLSDLPAPRIAVNLRPHPLLTPAKLDKLTRALIDLQISTGAFILLVPFQKSRDLPLCEAVARQLRENYQIISLEDPRQLKGLFRGVEMVIGMRFHSLIMAAAEDCRCFALSYDPKVSRLIAEVPMPGWELDQLPEAVNDISNTWINFYANGEGLTSDRKHFLIDRALIHREILSRLVS
>NZ_CP011304.1|WP_046660818.1|501114_502194_+|hypothetical-protein
MTEQPRSTDDRISETEATELMRSLLHKEGNWVNWGQKCQKLQKAGYDSQLIFEQTGFQNAQQNLIIVAAQVFESLIKAGADEDLLSYYIGPRSDVLYELRILNQEQRLGAAKLAAEKRIEVAEAHDIAKAIQDFSRLSQIPSEFTRHPGDAIAYQCWKRGKQKRDLAERAKLIAKGLKFAHSDSARQAIESLLQDFTVTPSRSAPLLPVHRLQDEDELARIIPLVGRFPVTVTDIKHTESLSVEEPFRLVTVGDKQTIVPLPGWQAILKAIDPVAILWPSDQLPRSIATRSEEVLLVIDRVLAEWDVNNYYLVEKDNSVFLQWFDSSPDVTILGELVLILRAKNILDEKNITEPWQMDD
>NZ_CP011304.1|WP_016517018.1|500100_500901_-|carbon-dioxide-concentrating-mechanism-protein
MKTKRHPKDSALGLVSTLSFPAIVGTADMMLKSAEVTLVGYEKIGGGHCTAIVRGNIADVRLAVEEGAKTAAQFGQLVSKSVIPRPMPNLEVIFPIGSRLAEIAQSQRGFSKLSNMSIGLLETRGFPAMVGAADAMLKSADVQLASYETIGDGLCTAIIRGSVANVAVAIDAGMREAEKIGELHAVMIIPRLLEDLEHTLPVASYWLETPEPLPMLLPNTVREKQRELVALPELEKTKIPIRRQEMQEKVLEEVIPVEVITDEDGY
>NZ_CP011304.1|WP_046660817.1|497770_498781_-|adenosine-deaminase
MARNATNELLQKAKKSKSDEFYTQLSDIESELQHYKSHFENQVVYCNCDDPRISNFFNYFTSNFNELGLKKIITSCYREQVKNLFNTEEDEKGFFFEYTGTEGEKNKPSSTDLVYFNGDGDFRSSESIELLKQSDIVVTNPPFSLFREYVAQLVKYDKKFLIIGNINAITYKEIFKLIKENKAWLGINLGRGISGFIVPEHYELYGTETRIDNSGNRVISPNNCLWLTNLDNFKRHEDIELTKRYFGNEVQYPKYDNYDGINVNKTQDIPIDYKGYMGVPITFLHKFNPDQFEIIKFRKGNDDKDLSVNGKCPYFRILIKNKRIQTEYIDLTDKER
>NZ_CP011304.1|WP_002760653.1|497303_497513_-|DUF2281-domain-containing-protein
MSTSAKSLEELVRQLSPQLKVEVQTFVESLLSKSNQPIKRKLRQDWAGMLKTDYTSIELQHLAVEWRNG
>NZ_CP011304.1|WP_046660816.1|496896_497319_-|PIN-domain-containing-protein
MEKWLVFLLDTNIWLERLLGQAQAEVVAELLDTLSPSDMCMTDFTLHSIGVICNRLNQREVFIKFVDDVLIDAGVVLVSIPANQMKRVVEIIDLFRLDFDDAYQYVAAELEKATIVSFDQDFDRTEQRRLTPMQVLKIRN
>NZ_CP011304.1|WP_046660823.1|508150_508474_+|DUF4164-family-protein
MSNETVTYSLEAVLTRIEGKIDNLQRDVTQKFDKIDERLTKLEIGQAEIKGELKGDIKALDERLTTEIKGLTARIAYQEFTNRGILIALVVAILGGAAKLFGFFPNP
>NZ_CP011304.1|WP_046660824.1|508511_509198_-|N-acetylmannosamine-6-phosphate-2-epimerase
MRIETLKSGLIVSCQAPVESSLHDPVIIAAMAHACVDRGACGVRIDSPAHLKATRQQLPDIPIIGLWKRNYRDCSVYITPKYQDALAIADAGADIIALDATPRKRPNDENLATIIDRIHRETGKLVMADIDSIESAIYAVAAGADVVGTTLYGYTEATKHLQPPSFSFLEELVNKLSVPVICEGGISTPTEAKKALEVGAYSVVVGTAITGIDLKTTAFLQGILSKYS
>NZ_CP011304.1|WP_002732961.1|509314_509824_-|inorganic-diphosphatase
MDLSRIPAQPKPGLINVLVEITAGSKNKYEFDKDLNAFALDRVLYSSVQYPCDYGFVPNTLADDGDPLDGMVIMDQPTFPGCVITARPIGMLEMIDGGDRDEKILCVPAKDPRYAEVKSLKDVSPHRLDEIAEFFKTYKNLEKKVTEILGWKDVDAVTALVEQCIAAYK
>NZ_CP011304.1|WP_046660825.1|511053_512232_-|AI-2E-family-transporter
MVEVKVVPPKRNWIQTWWQSLNSLSRLLVIALAAPLVVLNVWALSAIFGYFESLFVILLIAAVLSFLLGYPVTWLERQGLKRGLAAIVVSLITILIFVAVGITLVPLVFTQAQQFVNRLPEWLDSGQRQLMQLDTKIDTMNLPIPISFDGLIAQFNSRLGAELQILAGRSVNLALNLTVFTVVRVLDVLLTIILTFYLLLHSPDIWRSIIQWLPKPVQQPFSLTLRLSFQNYFVGQVICATCMALGLVTAFLSIKVPFGLLFGLLIGTMALIPFGGTVGIVTVTALLALRDIGLALQVLAVAVVVQQIVENGIAPRILGSVTGLNPFWVLVSVLTGARVGGLLGVIVAVPMAVMIKEALEVIRQVTPEETKHGVIKPSLPLESESPSEVVSR
>NZ_CP011304.1|WP_046660826.1|512403_514419_-|VacB/RNase-II-family-3'-5'-exoribonuclease
MEKGTLVEFRVQGERRLGVIDRPEGKKDWIVIDQGGNPHKLRPQRFDYIVKGGPSNYREIGNFLREVQPYLDPSGLEVAWELLAGENQLVTPETMAEILFSDRGWQFCYAAHCLLSDDKVYFKNKGDGYEARSENQVEEIKHQLEVEKQRQREKSQFLQRIQQALASETVEWSESDRIRLESLEKFILQPEQKYPAAMEILSLLGRSQTPEAAFELLVDLKWWSSHENLFLRRSSYPVQFSKKVLDVARLNLLNPPADADVNNRLDLTHQKIYTIDDESTEEIDDGLSVEMLADGGHRLWIHIADPSRLVRPDDELDLEARRRSTSLYLPTGMVPMFPLELAAGPMSLVQGKLCPALSFGVILDETGAIADYRIHPSTIKPTYRLTYEDVDEMLHLDLQHEPEVKILNRWAKQRHAWRKSQGSINIQMPESSIKVKDNDEIIVELQEVSPSRQLVAEMMILAGEIAGRYCQEHEIPVPFRGQPQPELPPDEELILLPAGPVRSCALRRCMPRSEMTTIPNRHASLGLNTYSQVTSPIRRYTDLLTHFQLKAHLRGDQLPFTRDRMQEILYSVASSAQEATSVERQTNRYWSLEFLRRQGDQVWQALVLRWLREEENLGLILLEELGLELPHRFERSVSLGDRFQVQVSRADPHRDEIRFRELSGFVSSQAS
>NZ_CP011304.1|WP_046660827.1|514496_516536_-|biosynthetic-arginine-decarboxylase
MAGKTQLKKQEKQLSPVDLTPSDGNNLEKVAPVKHWSIEDSENLYRIQGWGEPYFSINAAGNITVSPQGERGGSLDLYELVSAIKRRNIGLPLLIRFSDILEDRIERLNACFNRAIARYNYANVYRGVYPIKCNQHRHIVESLVRFGKPYQFGLEAGSKPELMIALATLEPALNGKNDKTQPLLICNGYKDKEYLETALLTTRLGHRPLIVIEQLEELYLTLRVSRQLGIAPHLGVRAKLGTKGVGRWGCSTGDRAKFGLTVPEILTVVMELEQAGMLDCLQLLHYHIGSQISAIGVIKDAIREASQIYVELAKLGANMTYLDVGGGLGVDYDGSKTNFYASKNYNMQNYANDIVAEVKEACEDAQIAPPILISESGRAIASHQSVLIFDILGSSEVPQNPPDPCNGKEHLILRNLWETYTGIDERNYQEAYHDAGQFKEEAISLFNFGYLSLKERARAEQLYWACCHKILQVARQQDYVPDDLEDLEQIMASIYYANLSVFQSVPDSWAIDQLFPIMPIHRLDREPTQRGIIADLTCDSDGKIAQFIDLRGDIKSVLELHPLEYKNGKHSPEPYYLGMFLVGAYQEIMGNLHNLFGDTNVVHIQMSPKGYDIEYLVKGDTITEVLSYVQYSAEDLLERIRLRCEQALQENRMTVEESQLLLQDYERSLRRYTYLVGGD
>NZ_CP011304.1|WP_046660828.1|516676_517210_+|DUF4330-domain-containing-protein
MQLLDSKGRLFGKFSLLDIGAALVILLTIIGIFVVPGTSGKSTIAQVTKEPIEVDVIVRGLSVLNPNALINQFNTEKKTNIVIRNQPAGQVDIKNVKPLSRNVLVPQPDGSVKVLPDPRTENYSQDMIMTLSGQAEVTDTGAVVGGQKVKIGTLIELEGDNYNFNTSVIDVRLSKRS
>NZ_CP011304.1|WP_043999193.1|517352_517943_+|recombination-protein-RecR
MYTPPLARLIEQLQKLPGVGPKSAQRLALYILKRPEQDAIELAQAIVAAKKQVGLCQVCFHLSAEPICEICRNPNRETGTICVVADSRDVIALEKTREYSGKYHVLGGVISPMDGIGPDQLNIQSLVTRVSQKKIQEVILAISPSVEGETTTLYIGGLLKPFTKVTRIAFGLPMGGDLEYADEVTLARALEGRREL
>NZ_CP011304.1|WP_052734155.1|518186_519554_-|PDZ-domain-containing-protein
MALSKRQSYFGFVFMNQSRPSFVSVQKLLSGGAIATLAVSSLMVLTPAAKGEKPLEDNPKAVIDQVWQIVNNEFVDRSFHQIDWQKKRQELLSRNYTNPQQAYTAIREALKELGDTYTRFLTPSEFSVLTSQTSGELSGIGIRLALDKRTSDLIVVDTVKKSPAKEAGVKSGDRLIRINGKPTALMTLEQAMEALQGEVGTSVSLQLARPDQGVFEVTLTRVDIEIPSVSYTLKQEGGVKVGYIKLDEFSSHAAEQMKEAIEELSQQQISGYVLDLRGNPGGLLFASVDIARMWMKQGKIVSTIDRRGGDRQFSANNTAITDLPLVVLVNKGSASASEILAGALKENGRATLVGTSTYGKSTVQSVHTLSDGSGLAVTIARYYPPNGENIYKKGIKPDVQIELTREQQLRFRDDPSLLGTKDDPQYQQAISLLQSHNVKRPSTGNLNNPLSSRAE
>NZ_CP011304.1|WP_004162555.1|519654_520074_-|NUDIX-domain-containing-protein
MIFVALAILEQDGRFLMQLRDDIPTILYPGVWGLFGGHLEAGESPEIGLKRELKEEINYEAPSLRYFRSYNDDNLSRYLYHVPLTLGLEKLVQTEGQDLALLPPAAIRQGEYYSEKINQTRSLGKIHRQILLDFLEVEL

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Crispr_ID: NZ_CP011304_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011304_4

671329-671419

Orphan

Consensus_repeat	Method
GCTAAAAAGTGCTTCAACGCAAATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011304_4

>merge|NZ_CP011304|4|671329-671419|CRISPRCasFinder
GCTAAAAAGTGCTTCAACGCAAATCCATTTTAGGGATGTCAAATCGGCGAAACCCTTATACAGCGAGCAAAAAAGTGCTTCAACGCAAATC

>NZ_CP011304|4|4|671329-671419|CRISPRCasFinder
GCTAAAAAGTGCTTCAACGCAAATC	CATTTTAGGGATGTCAAATCGGCGAAACCCTTATACAGCGA
GCAAAAAAGTGCTTCAACGCAAATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011304.1\|WP_046660941.1\|678833_680339_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP011304.1\|WP_046663591.1\|681691_683017_-\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|273908
NZ_CP011304.1\|WP_046660930.1\|660055_662299_-\|stem-cell-self-renewal-protein-Piwi	unknown	unknown	gnl\|CDD\|240017
NZ_CP011304.1\|WP_046660939.1\|675682_678310_+\|family-10-glycosylhydrolase	unknown	unknown	gnl\|CDD\|224563
NZ_CP011304.1\|WP_002801237.1\|664358_665354_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|177082
NZ_CP011304.1\|WP_046660932.1\|663652_664318_+\|ImmA/IrrE-family-metallo-endopeptidase	unknown	unknown	gnl\|CDD\|368753
NZ_CP011304.1\|WP_002747783.1\|666791_667346_-\|YqeG-family-HAD-IIIA-type-phosphatase	unknown	unknown	gnl\|CDD\|225090
NZ_CP011304.1\|WP_046660937.1\|672871_674008_-\|DUF3747-domain-containing-protein	unknown	unknown	gnl\|CDD\|372192
NZ_CP011304.1\|WP_046660931.1\|663290_663647_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP011304.1\|WP_002738938.1\|678478_678661_-\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
NZ_CP011304.1\|WP_046660935.1\|669861_671280_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225420
NZ_CP011304.1\|WP_046663590.1\|662302_663094_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378929
NZ_CP011304.1\|WP_046660934.1\|668205_669369_+\|ferrochelatase	unknown	unknown	gnl\|CDD\|178068
NZ_CP011304.1\|WP_046660943.1\|683260_684031_-\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|214372
NZ_CP011304.1\|WP_046660944.1\|684228_685671_-\|Fe-S-cluster-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|236990
NZ_CP011304.1\|WP_002739055.1\|669459_669711_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046660942.1\|680373_681636_-\|SufS-family-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|215460
NZ_CP011304.1\|WP_046660938.1\|674168_675518_+\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	unknown	unknown	gnl\|CDD\|235059
NZ_CP011304.1\|WP_103672689.1\|671498_672606_-\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
NZ_CP011304.1\|WP_046660933.1\|667462_668086_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312

Protein	Function_ID	Function_description	E-value
NZ_CP011304.1\|WP_046660941.1\|678833_680339_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	1.63942e-65
NZ_CP011304.1\|WP_046663591.1\|681691_683017_-\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|273908	TIGR01981, UPF0051_protein_Rv1462/MT1509, FeS assembly protein SufD. This protein, SufD, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. SufB and SufD are homologous. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	3.16571e-98
NZ_CP011304.1\|WP_046660930.1\|660055_662299_-\|stem-cell-self-renewal-protein-Piwi	gnl\|CDD\|240017	cd04659, Piwi_piwi-like_ProArk, Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.	2.34766e-36
NZ_CP011304.1\|WP_046660939.1\|675682_678310_+\|family-10-glycosylhydrolase	gnl\|CDD\|224563	COG1649, COG1649, Uncharacterized protein conserved in bacteria [Function unknown].	2.74349e-60
NZ_CP011304.1\|WP_002801237.1\|664358_665354_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|177082	CHL00180, rbcR, LysR transcriptional regulator; Provisional.	0
NZ_CP011304.1\|WP_046660932.1\|663652_664318_+\|ImmA/IrrE-family-metallo-endopeptidase	gnl\|CDD\|368753	pfam06114, Peptidase_M78, IrrE N-terminal-like domain. This entry includes the catalytic domain of the protein ImmA, which is a metallopeptidase containing an HEXXH zinc-binding motif from peptidase family M78. ImmA is encoded on a conjugative transposon. Conjugating bacteria are able to transfer conjugative transposons that can, for example, confer resistance to antibiotics. The transposon is integrated into the chromosome, but during conjugation excises itself and then moves to the recipient bacterium and re-integrate into its chromosome. Typically a conjugative tranposon encodes only the proteins required for this activity and the proteins that regulate it. During exponential growth, the ICEBs1 transposon of Bacillus subtilis is inactivated by the immunity repressor protein ImmR, which is encoded by the transposon and represses the genes for excision and transfer. Cleavage of ImmR relaxes repression and allows transfer of the transposon. ImmA has been shown to be essential for the cleavage of ImmR. This domain is also found in in metalloprotease IrrE, a central regulator of DNA damage repair in Deinococcaceae, HTH-type transcriptional regulators RamB and PrpC.	1.05196e-07
NZ_CP011304.1\|WP_002747783.1\|666791_667346_-\|YqeG-family-HAD-IIIA-type-phosphatase	gnl\|CDD\|225090	COG2179, COG2179, Predicted hydrolase of the HAD superfamily [General function prediction only].	3.01395e-58
NZ_CP011304.1\|WP_046660937.1\|672871_674008_-\|DUF3747-domain-containing-protein	gnl\|CDD\|372192	pfam12565, DUF3747, Protein of unknown function (DUF3747). This family of proteins is found in bacteria. Proteins in this family are typically between 215 and 413 amino acids in length. There is a conserved DSNGYS sequence motif.	6.47394e-93
NZ_CP011304.1\|WP_046660931.1\|663290_663647_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	7.87473e-09
NZ_CP011304.1\|WP_002738938.1\|678478_678661_-\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	2.78795e-12
NZ_CP011304.1\|WP_046660935.1\|669861_671280_+\|hypothetical-protein	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	1.37853e-69
NZ_CP011304.1\|WP_046663590.1\|662302_663094_-\|hypothetical-protein	gnl\|CDD\|378929	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	1.66857e-08
NZ_CP011304.1\|WP_046660934.1\|668205_669369_+\|ferrochelatase	gnl\|CDD\|178068	PLN02449, PLN02449, ferrochelatase.	0
NZ_CP011304.1\|WP_046660943.1\|683260_684031_-\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|214372	CHL00131, ycf16, sulfate ABC transporter protein; Validated.	5.67081e-147
NZ_CP011304.1\|WP_046660944.1\|684228_685671_-\|Fe-S-cluster-assembly-protein-SufB	gnl\|CDD\|236990	PRK11814, PRK11814, cysteine desulfurase activator complex subunit SufB; Provisional.	0
NZ_CP011304.1\|WP_046660942.1\|680373_681636_-\|SufS-family-cysteine-desulfurase	gnl\|CDD\|215460	PLN02855, PLN02855, Bifunctional selenocysteine lyase/cysteine desulfurase.	0
NZ_CP011304.1\|WP_046660938.1\|674168_675518_+\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	gnl\|CDD\|235059	PRK02705, murD, UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase.	0
NZ_CP011304.1\|WP_103672689.1\|671498_672606_-\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NZ_CP011304.1\|WP_046660933.1\|667462_668086_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	7.3938e-24

>NZ_CP011304.1|WP_046660935.1|669861_671280_+|hypothetical-protein
MINLETLEGWLNAPVENERLEFKQAKNQFDTIKLLKYCVALANEGGGHFILGVTDKRPRKIVGSQAFPTPEEINSIKSLIVQKLRLRVEITELAHPDGRVLVFEVPTRPTGQPIAFEGAYLMRAGEDLVFMTPDRLKLIFAEDQQDWFCQSARSHASPDEVIDLLDTQTYFKLLKLPYPSHRDAVLERLQSDQLLDKTSKGWTIPNLSAILLARQLESFSPTLARKAPRVIIYEGTGKIKTRLEQTGTKGYAVGFDGLVNFVHDLAPQNRVIEEVLREEVKMFPPQALRELIANALIHQDFLATGASVMIEMYDDRVEISNPGIPFIKVERFIDEYRSRNEQLADIMRRFGICEEKGSGIDKVISAAEKFQLPAPDFRVGEIRTTSILFAHQDFGKMSQSDRIRACYQHCCLLYVDNQRMSNQTLRNRFCLNESKNNTVSQVIGATKEAGLIKLDESESKSTRYARYLPFWA
>NZ_CP011304.1|WP_002739055.1|669459_669711_-|hypothetical-protein
MVIIEITNVEEILSAKIGSFAAKIVQALADDEGKVEEVLIKELQANFQERGIKANLFSVTGLDMLGNGRLEVNVNVRSANMMS
>NZ_CP011304.1|WP_046660934.1|668205_669369_+|ferrochelatase
MGRVGVLLLNLGGPERLEDVRPFLFNLFSDPEIIRLPIKGLQKPLAWLISTLRASKSQENYRQIGGGSPLLKITEAQATALQQRLAEMGREVSVYIGMRYWNPFTEEAIERIKRDHIKKLVILPLYPQFSISTSGSSFRVLEEMWQQDPYLRLTEYTLIPSWYDHPTYLSAMADLIARELEQCPNPDQVHIFFSAHGVPQSYVEEAGDPYQREIEECTRAIMRTLNRPNQYTLAYQSRVGPVEWLKPYTEDALKGLGEQGIKNLLVVPISFVSEHIETLQEIDIEYREVAEEAGIEHFQRVPALNTHPMFIESLSQLVVKSLEENPTTFEQITHPKANMKMYPQERWEWGMTTAAEVWNGRLAMIGFLAIIIELITGQGPLHFVGLL
>NZ_CP011304.1|WP_046660933.1|667462_668086_-|class-I-SAM-dependent-methyltransferase
MATILRPLSYQYQWLYDGISRLAALAVGGESRFRQLALEGLKIAKNDPILDLCCGAGQTTRYLVPLSDRCTGLDVSPRALERASLAVPQAHYVEGLAEKMPFNAGEFALVHTSAALHEMEPEQLQEILKEVYRVLRPGGIFALVDFHRPTNPLFWPSLALFLQLFETDTAWQFIDRDLIRSLQAIGFRDCQQKLYAGGSLQVIQAAK
>NZ_CP011304.1|WP_002747783.1|666791_667346_-|YqeG-family-HAD-IIIA-type-phosphatase
MTRAKILQPDLILGDTILGLTLEILSQHQIKGLILDVDDTLVPLQETTVSDDLQRWVDSLRLYLPIWLVSNNLSENRIGAIADNLQLPYLLGAVKPSRRKLRQAMAAMSLPPQQIAMVGDRLFTDVLAGNRLGMFTILVKPMVNPLTGGAAYPIHDFEVWISQILGVSLHPQHYFIKPDQSSQK
>NZ_CP011304.1|WP_002801237.1|664358_665354_-|LysR-family-transcriptional-regulator
MTDIPFTLDQLRILKAIAAEGSFKRAADTLYVSQPAVSLQVQNLEKQLNVPLFDRGGRKAQLTEAGHLLLSYGEKIITLCQETCRAIEDLQNLQGGTLIVGASQTTGTYLLPRMIGLFRQKYPEVSVQLQVHSTRRTSWSVANGQVDLAIIGGEVPAELQETLRIIPYAEDELALVLPIFHPLSKVEMIQKEDLYRLKFITLDSQSTIRKVIDKVLTRCEIDTKRLKVEMELNSIEAIKNAVQSGLGAAFVSVTAIEKELQMGVIHATRIKDVEIRRTLSVIINPNRYRSKAAEAFTLEILPQFSTYPEYLADDHNFEPIPNSQTAEIISK
>NZ_CP011304.1|WP_046660932.1|663652_664318_+|ImmA/IrrE-family-metallo-endopeptidase
MDIIKPYSFIPKTEIEAQADNILKKVKAHRRRPLKNCDIAEAAADHFDLAIEWTDIKPDKEGEIAAMIIPIEKKIILNEDVKFLKDSQNSSLAKEGFKNSSLAHEIGHFVLHINQTAVSNFFERINQGDSLGTIQPFLCRTVDSSQRIEWQAQYFASCLLMPMSELEKAIKGRDLTKWGLLYAIADELGVTITNLRSRLESLHWIKVDKKVIYRGSNFPKR
>NZ_CP011304.1|WP_046660931.1|663290_663647_+|helix-turn-helix-transcriptional-regulator
MSETFGQVIRKARREEEYSQRELAKLIGVDYTYLSKLENDHAGYPPSQQVIESLATHLKLNAQTLGELAGRISSDDQKVFKELVQKYQQMPILLRRMKDNPNFAKKVISEATKLEPEE
>NZ_CP011304.1|WP_046663590.1|662302_663094_-|hypothetical-protein
MSYSLWRSLKPAIGYENWHCQTKRGFEKARNKEPEVQRLLSQDNQSQKIGKLAQRGVFEFHQEPARLSGSDGVEQVAEILQLNQESPEIQARVLVILNNYYQQPILLNKEIINLSRGDEGYPEPIVIEQGNYRFNLSAAFDCIFREADDTIHILDLKTGQSNFDRRQAHVYLLAASYLYPQEKIVASFYNLETQTSSENISLSSEAIEAVKIELAFLSKKHQQQLKKYKNHPEDFYHIFPPQSGYACRYCPFTSICDYANKEV
>NZ_CP011304.1|WP_046660930.1|660055_662299_-|stem-cell-self-renewal-protein-Piwi
MNYTVANTANSPIFLSEISSLTLNNSCLNCFKFNHQVTKKIGNRFSWQFSHKFPAVVVIFEDNCFWVLAKDEKSIPSLQQWKEALSDIQEVLREDIGDHYYSIHWLKDFQITALVTAQLAVRILKIFGKFSYPIVFPKDSEISENQVQVRREVDFWAEIINDTDPAICLTVDSSIVYSGDLEQFYENHPYRQDAAKLLVGLKVKTIETNGTAKIIRIAGTIGEKREYLLTKATGSISRRKLEEAHRDQPVVAVQFGKNPQDYIYPLAALKPCMTDKDESFFQVNYGDLLKKTKIFYAERQKLLKLYKQEAQKTLNNFGFQLRERSINSQEYPEVFWTPSISLEQTPILFGKGERGEKRETLKGLSKGGVYKRHREYEDPARKIRLAILKPDSFKVGDFREQLEKRLELYKFETILPPENQINFSVEGVGSEKRARLEEAVDQLIRGEIPVDIALVFLPQSDRNADNTEEGSLYSWIKKKFLDRGVITQMIYEKTLNNKSNYNNILHQVVPGILAKLGNLPYVLAEPLEIADYFIGLDVGRMPKKNLPGSLNVCASVRLYGKQGEFVRCRVEDSLTEGEEIPQRILENCLPQAELKNQTVLIYRDGKFQGKEVENLLARARAINAKFILVECYKTGIPRLYNLQQKQINAPSKGLALALSNREVILITSQVSEKIGVPRPLRLKVHELGEQVNLKQLVDTTLKLTLLHYGSLKDPRLPIPLYGADIIAYRRLQGIYPSLLEDDCQFWL
>NZ_CP011304.1|WP_103672689.1|671498_672606_-|peptide-chain-release-factor-2
MEISELKKGIEIVGLRLGKTQDYLDLPTLRAKIKDLEQVAAVPTFWDNPDTAQKTLQELNECKSSLETYQGWCEQLEDTKAIIELLELESDRTLLEEATDNLTHLQHDLDRWELQQLLNGPYDAKGAVLTINAGAGGTDAQDWTEMLLRMYSRWAEKQGYKVTLAEISEGDEAGIKSVTIEIAGTYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVMPILGDDAVRVEIPDKDLEITTTRSGGKGGQNVNKVETAVRVVHLPTGIAVRCTQERSQLQNKEKALALLKAKLLIIAREQQAQAIAEIRGDMVEAAWGNQIRNYVFHPYQLVKDLRSNVETTDVTRVMNGDLDSFIEAYLRLGGAV
>NZ_CP011304.1|WP_046660937.1|672871_674008_-|DUF3747-domain-containing-protein
MNLKSSLKFTLLFSLLGGCLLTTPSQATLFEQREVNQEDFIAIARPYGNGKYDLLILQQIQGKRQCWAVNGTEPTIVQPLLLDFDFTGSCERATDSNGYSLRIQGKDYGLEYLLRIVQRNGELVLVGTPRNPRQSEVIIGRTKGLGTGLIQIYLIDGWRFTKRSLAGQNLSHIYLTADSPNFNPPPELLAGNSYSLPRESVKAETPVNPPGDPEVREYTFTAAETAVQSNPEPVVTNPVPEQNSTPAPPVTSNLPPLTPPLRLGSGQANAQNNNAIVPPPPPRNLGNQRSLSDVITFNRPAANPSSGNTSNSGRKGFKVVIEAKNESDRSKVRSLYPDAFPTSHQGRRVWQIGAFSSRDKAENALQSLAPLRGSIVPF
>NZ_CP011304.1|WP_046660938.1|674168_675518_+|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase
MAKAAIIGLGRSGIAAARCLKRDGWQVTLSDRSDSPSLQATKTNLESEGIIVNLGQNLSLGASDLPDLIVVSPGVPWDAPILITAREKGIDTIGELELAWRYLQSSPWLGVTGTNGKTTTTALCAAIFQKAGLNAPSCGNIGYAACELALKADKYDWIIAEISSYQIESSRDLSPKIGIWTTFTPDHLSRHQTLENYYQIKASLLQRSDRQILNGDDPYLRQIGVSQWQQAYWTSVQGKEALLGDPSRGVYLQDNWIVAFGELIAPVNLLKMVGSHNQQNLLMAVAAARLAGIEKKAITEAIATFPGVAHRLEYVCTYKGLDFINDSKATNYDAAAVGLKSVPSPAILIAGGEAKAGDDRAWIAEIKAKVATVLLIGDAAADFARRLQSAGYQDYECVETMDRAVQRAAELGLAKAAKVVLLSPACASFDQYQSFEHRGDHFRQLSLQL
>NZ_CP011304.1|WP_046660939.1|675682_678310_+|family-10-glycosylhydrolase
MLGSSFRLDHLFKKRLITCLFSCVAVLLPIPVLATPVAVLKSQENANQWTAITDRLQNVGVNYCILQSNQWQSDADLNKIKVLIIPNVETISGLQASVLSRWLNRGGKIIVTGPAGNLSEPAVRDQLRSLFGAYWAYPHSQAYTLRPTNLGEVKNQKPLASSLLGGVVIPTGVNSQTVAVWGARNNPPAVVLNNNSIFLGWRWGSDAVANLALDSAWLETALQRYGINRSSSLNTIAPYCQGNSTIVNNINNTPTATAPRPPLPQISENPPSETARLSPNTEAIPPRASLTPQQISQMTAELQGLIGRYGATLLALEASNSNISNTDKSLAQAFHNRAKNSPTTDTARRFRLALENAQGALNNFQNLIAQGDYTQAREFWLQARRNLWDHYPTNRQFAQPEIRAMWLDRGTIVEAKNEEDLAKVFDRMAAAGINVVFFETVNASYTIYPSQVAPEQNPLTRGWDPLKVAVKLAHERNMEIHAWVWVFAAANQAHNKVLEQPLDYLGPVLSRNPDWGATNKSGGSFDYSQGTKKAFFDPANPDVQNYLLSLYEEIVKNYDVDGLQLDYIRYPFQNQNSNQTYGYGKSSRWLFKQMTGVDPITLNHRGALWEQWTSFKIRHVDTFVSQVSTRLKQIRPHLKISAAVFPIEQKERLYRIQQNWEEWGQNQWIDLIFLMTYALDTGTLEEKTQSLFDRKIAGNALIVPGIRLLKVPDQVTIDQLQFIRNLPTSGFALFATENLNPNLQTILNRIQGSIITKKAEPLPHRQPFKTAAARFNSLRQEWSFLIVNNLWAMEERTLKAWGQEVDEMANLLEQLATNPSPRNLTLTQNALKRFSYQFKSVMSRQKDLSAYQIQVWENRLATLQSLLSYGQRVEF
>NZ_CP011304.1|WP_002738938.1|678478_678661_-|30S-ribosomal-protein-S21
MTQVVVGQNEAIESALRRFKRQVAKAGIYADIKKHQFFETPQEKRKRKAVARRRQRTRRR
>NZ_CP011304.1|WP_046660941.1|678833_680339_-|RluA-family-pseudouridine-synthase
MKEVTYYYQGICPETGELLRLPRTLLAEKIAQDLMTTITNPQGKMYGILLGENAAGEIEILKAFSGQGEAAGWVPSLVGREKIMLEEKRVLQLLETIKQEIITLQSIPEHNLYRLNQANFECKIQALQQQHQNHKQERNRLRNLGNLKPEELEKLNNISRQEKRARKQLKQEQKQVLDPLIDKINVANQRIIELKQQRRKLSKQLQELLYQSYCLNNFSGQSLSLAKLMGSNLLPTGTGECCAPKLLNYAAMKGLKPVAMAEFWWGESNRDRKQGEFYGACQERCQPLMGFLLSGLRSSLEIIYEDEGIIAINKPAGLLSVAGRYQDSQDAVVNRFRRQGKNVIPVHRLDRETSGILLLAKSLDIYRCLSQQFQRREVEKIYEAILSEVVERESGIIDLPLWGNPQNRPYQTVDWQRGKASQTYFKVIGKEGNYSRLEFIPYTGRTHQIRVHSQAGLGIGILGDLLYNGKQSDRLYLHAKQLSFRHPQTETKLDLIIPTPF
>NZ_CP011304.1|WP_046660942.1|680373_681636_-|SufS-family-cysteine-desulfurase
MTIIQEKTLAQKVRADFPILHQTVHDKPLIYLDSAATSQKPIQVLETLRNYYEKDNANVHRGAHTLSVRATEAYEGARDKVARFINAASRQEIVYTRNATEAINLVAYSWALNTLKAGDEIILSVMEHHSNLIPWQIVCQKTGAVIKYVQLTSEESFDLEQYKSLLSDKTKLVAVLHVSNTLGCINPVAEIVSLAHQVGAKVLIDACQSVPHLAIDVQSIDCDWLVASGHKMCAPTGIGFLYGKEAILEAMPPFFGGGEMIAEVYLDHFTCAELPHKFEAGTPAIGEAIALGAAVEYLMGLGMDNIHAYEEELTAYLFKKLGEIEGLRIYGPPPSLTGQGRASLAAFNVEGIHASDLATLLDHEGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTREEIDSFIVALQETIDFFANCFS
>NZ_CP011304.1|WP_046663591.1|681691_683017_-|Fe-S-cluster-assembly-protein-SufD
MTAIITKPEQSGELLLKLSRETVPTIDNGKILELRESGASKAQELAIPGRKDEEWQFTDLSQLWAIDFRAPQTVTIDKNALAVFLLPEAKNSHLVFVNGIYQPELSDISALPPGVSVGNLANAQKDVLVNYLGKEKTPEFFTALNQAGLSDGAVIHVTANTVVTTPIHLLFITVVEEIPRFYQPHSLIVAETGASVNIIENYGALAEHCSDLPVNYSYFTNAVTEIYLEANAEVIHTRVQRESGDGFHIGRTIIEQAHDSRYTLNEINLGAKLCRHNLDVLQKGEQTETNLHGLAMITGQQTADTHSAIYLNHPHGITKQLHKCIVDGSAHAIFNGKVFVPKPAQLTNASQLNRNLLISNKARVNTKPELQITADNVKCSHGATVSQLEADDLFYLQSRGLSADTARSLLIDAFSAEILAKIPLESLRQRLGQCVACRSVE
>NZ_CP011304.1|WP_046660943.1|683260_684031_-|Fe-S-cluster-assembly-ATPase-SufC
MSEVILSVKNLTASIDGNQILKGVNLEIKAGETHAIMGRNGSGKSTFSKVIAGHPDYEVTGGEIIYKGENLLEKEPDERALMGIFLAFQYPLEIPGVSNLDFLRVAYNARQKHLGSEELDSFDFEELVEKKLEVVQMNPSFLGRSLNEGFSGGEKKRNEILQMALLEPTLGILDEIDSGLDIDALRIVAQGVNHLATPDNAFLLITHYQRLLNYIEPDVIHVMYDGRIVTSGGKELALELERTGYDFLDEQVLAVK
>NZ_CP011304.1|WP_046660944.1|684228_685671_-|Fe-S-cluster-assembly-protein-SufB
MSATTVKNLVNQPYKYGFITDIESETIPRGLNEEIIRLISAKKKEPEFMLDFRLRAYHQWQKMTEPSWPHVSYPAIDYQNIIYYSAPKQKKAKLNSLEEVDPTLIETFEKLGIPLSEQKRLSNVAVDAIFDSVSIATTFKEKLAEQGVIFCSISEALQEHPELVQKYLGTVVPVGDNYFAALNSAVFSDGSFVFIPKGVACPMELSTYFRINNGETGQFERTLIVAEEGASVSYLEGCTAPMYDSNQLHAAVVELVALDNADIKYSTVQNWYAGDANGKGGIYNFVTKRGLCKGVNSKISWTQVETGSAITWKYPSCVLVGDNSVGEFYSIALTNNKQQADTGTKMIHIGRNTKSTIISKGISAGNSQNSYRGLVKMGPKAKGARNYSQCDSMLIGDNAEANTFPYIQVDNNSAKVEHEASTSKIGEDQLFYFAQRGISEEDAVSMLVSGFCKDVLSKLPMEFAAEADKLLSLKLEGTVG

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Crispr_ID: NZ_CP011304_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011304_5

751880-751970

TypeV

Consensus_repeat	Method
GTTCAGCTTTAAGACGCTCTTGTTCTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011304_5

>merge|NZ_CP011304|5|751880-751970|CRISPRCasFinder
GTTCAGCTTTAAGACGCTCTTGTTCTAATTGTAAACTTGCTTGTTCTAACTGTAAACTTGCTTGTTCAGCTTTAAGACGCTCTTGTTCTAA

>NZ_CP011304|5|5|751880-751970|CRISPRCasFinder
GTTCAGCTTTAAGACGCTCTTGTTCTAA	TTGTAAACTTGCTTGTTCTAACTGTAAACTTGCTT
GTTCAGCTTTAAGACGCTCTTGTTCTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011304.1\|WP_046661003.1\|770188_771199_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046660985.1\|741337_742393_+\|phosphate-acyltransferase-PlsX	unknown	unknown	gnl\|CDD\|235414
NZ_CP011304.1\|WP_046660991.1\|748935_750369_-\|membrane-protein	unknown	unknown	gnl\|CDD\|226196
NZ_CP011304.1\|WP_046660993.1\|751136_751808_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NZ_CP011304.1\|WP_046661000.1\|758483_759101_+\|methylthioribulose-1-phosphate-dehydratase	unknown	unknown	gnl\|CDD\|274521
NZ_CP011304.1\|WP_046661002.1\|768541_769768_-\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|376574
NZ_CP011304.1\|WP_046660999.1\|757874_758255_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046660989.1\|746326_747214_+\|glutaminase	unknown	unknown	gnl\|CDD\|234880
NZ_CP011304.1\|WP_046660992.1\|750482_751115_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NZ_CP011304.1\|WP_046660988.1\|745094_746315_-\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|238452
NZ_CP011304.1\|WP_046663594.1\|759353_759689_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046660987.1\|743937_744864_+\|ACP-S-malonyltransferase	unknown	unknown	gnl\|CDD\|272922
NZ_CP011304.1\|WP_046660997.1\|754127_755342_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|223594
NZ_CP011304.1\|WP_046660998.1\|755635_757072_+\|TM0106-family-RecB-like-putative-nuclease	unknown	unknown	gnl\|CDD\|274603
NZ_CP011304.1\|WP_158524791.1\|759881_767642_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380205
NZ_CP011304.1\|WP_103672738.1\|757632_757857_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046660990.1\|747217_748939_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224720
NZ_CP011304.1\|WP_046660986.1\|742713_743715_+\|beta-ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|215185
NZ_CP011304.1\|WP_046660984.1\|739895_741188_-\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224938
NZ_CP011304.1\|WP_103672690.1\|752820_753291_+\|DUF29-domain-containing-protein	unknown	unknown	gnl\|CDD\|366774

Protein	Function_ID	Function_description	E-value
NZ_CP011304.1\|WP_046660985.1\|741337_742393_+\|phosphate-acyltransferase-PlsX	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	2.37277e-179
NZ_CP011304.1\|WP_046660991.1\|748935_750369_-\|membrane-protein	gnl\|CDD\|226196	COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	2.57846e-163
NZ_CP011304.1\|WP_046660993.1\|751136_751808_-\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	1.20651e-17
NZ_CP011304.1\|WP_046661002.1\|768541_769768_-\|ISL3-family-transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	4.17478e-80
NZ_CP011304.1\|WP_046661000.1\|758483_759101_+\|methylthioribulose-1-phosphate-dehydratase	gnl\|CDD\|274521	TIGR03328, dehydratase-enolase-phosphatase_complex_1, methylthioribulose-1-phosphate dehydratase. Members of this family are the methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway. This pathway allows methylthioadenosine, left over from polyamine biosynthesis, to be recycled to methionine. [Amino acid biosynthesis, Aspartate family].	5.136e-65
NZ_CP011304.1\|WP_046660989.1\|746326_747214_+\|glutaminase	gnl\|CDD\|234880	PRK00971, PRK00971, glutaminase; Provisional.	1.27079e-129
NZ_CP011304.1\|WP_046660992.1\|750482_751115_-\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	3.04482e-18
NZ_CP011304.1\|WP_046660988.1\|745094_746315_-\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	1.15889e-161
NZ_CP011304.1\|WP_046660987.1\|743937_744864_+\|ACP-S-malonyltransferase	gnl\|CDD\|272922	TIGR00128, Malonyl_CoA-acyl_carrier_protein_transacylase, malonyl CoA-acyl carrier protein transacylase. This enzyme of fatty acid biosynthesis transfers the malonyl moeity from coenzyme A to acyl-carrier protein. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension. [Fatty acid and phospholipid metabolism, Biosynthesis].	1.23185e-102
NZ_CP011304.1\|WP_046660997.1\|754127_755342_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|223594	COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones].	2.34572e-94
NZ_CP011304.1\|WP_046660998.1\|755635_757072_+\|TM0106-family-RecB-like-putative-nuclease	gnl\|CDD\|274603	TIGR03491, TIGR03491, RecB family nuclease, putative, TM0106 family. Members of this uncharacterized protein family are found broadly but sporadically among bacteria. The N-terminal region is homologous to the Cas4 protein of CRISPR systems, although this protein family shows no signs of association with CRISPR repeats.	0
NZ_CP011304.1\|WP_158524791.1\|759881_767642_-\|hypothetical-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	1.03628e-13
NZ_CP011304.1\|WP_046660990.1\|747217_748939_+\|hypothetical-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	9.68562e-07
NZ_CP011304.1\|WP_046660986.1\|742713_743715_+\|beta-ketoacyl-ACP-synthase-III	gnl\|CDD\|215185	PLN02326, PLN02326, 3-oxoacyl-[acyl-carrier-protein] synthase III.	0
NZ_CP011304.1\|WP_046660984.1\|739895_741188_-\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224938	COG2027, DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) [Cell envelope biogenesis, outer membrane].	6.22434e-50
NZ_CP011304.1\|WP_103672690.1\|752820_753291_+\|DUF29-domain-containing-protein	gnl\|CDD\|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	1.4063e-52

>NZ_CP011304.1|WP_046660993.1|751136_751808_-|Uma2-family-endonuclease
MTFTPAIDPDIEYPDSDGKPMADNTEQYEWIVKIKENLEILFANSPNVFIAGDLLWYPVQDKKITGPVAPDVMVVFGRPKGRRGSYKQWQEDNIAPQVVFEILSPSNSLEEMERKLLFYQRYGVEEYYLYDPDSHNFQGWWRREGLLSSIPEINGWVSPRLNIRFELRGDELEIYSLDGQKFLTSIELSQKAEEASLQLEQERLKAERLAEYIRSLGIDPDTL
>NZ_CP011304.1|WP_046660992.1|750482_751115_-|Uma2-family-endonuclease
MTFTPAIDPDIEYPDSDGKPMADNTEQYEWIVKIKENLEILFANSPNVFIAGDLLWYPVQDKKITGPVAPDVMVVFGRPKGRRGSYKQWQEDNIAPQVVFEILSPSNSLEEMERKLLFYQRYGVEEYYLYDPDSHNFQGWLRREGLLSSIPEINGWVSPRLKIRFELRGDELEIYSLDGQKFLTSIELSQKAQRLAEYIRSLGINPDTLS
>NZ_CP011304.1|WP_046660991.1|748935_750369_-|membrane-protein
MKAWAKSLEKPAVEFSETQLTLLSGKIPDGLRGSLYRNGPGRLERGKQKVGHWFDGDGAVLAVHFHDKGASATYRYVQTAGYQQESVANQYLFPNYGMNAPGFFWNNWGKEVKNAANTSVLALPDKLLALWEGGFPHKLDLQSLETLGLDNLSSLQAKETFSAHPKVDVFRGEIFNFGVTISAKVSLNLYKSDSTGEIIQKNTFDLDRLSLLHDFVLAGQYLVFFVPPIKADKLSILLGFKTFSDAMQWQPELGTRILIFERDSLQLVSESVTDSWFQWHFANGCVNDQGNLEIVFVRYDDFKTNQFLKEVVTGETETLAIGKLANITINPLSAKVINQEILSDLSCDFPVVSPQLVGQKWQNTFLAVHRPDSDISREIIGLPACYNHSTGKLTIAYLENNCYGTEPIFVCDGLSPETGWLIVVVYDGNNHSSQVRIYDSQQLEKEPLCCLQLPSVIPPGFHGTWQEKSEKALINSF
>NZ_CP011304.1|WP_046660990.1|747217_748939_+|hypothetical-protein
MKISLNSSKKHRFYLVIILLIFMALCVTSLFFPLPESLNYDEGYHYESGLEILRGRAAQRGDEDIYHRNIMPASALPPLVDQTIQNLFPISKYLNLENKFFGRFATIIISVFLAIYVFIWSKQLYGLSAGFLALIIYILDPNIIGHSRIITQDLFGAASIFIASYYFWSFLRFGGRKNLVLSILTFGIAQICRLTAVYLVPIYVILSVGFYHREIIQSIQQKNILVIQQGIKRSIFYILALILSTMLIINIGYSFEGSGRQLGDYQFLSQSFQRLQTNPIFKSLPIPIPAAYLQALDFGKYKQETGFGSGMPYLLGQLGFIVDPVQGFKIKGFPQYFLIAFLYKVPIATQIFIWLGFISLFLWRKQLNFWQNEAFLIIPTVLYFILMSSNTAQIGIRYILMIFPFLFVFASRIVTSWPAYKRPYRILIIVLTLYLLISNLSYFPHYISYFNELVIDRKMSYQVLADSNLDWGQNKNYLQDYLQKHPNALFIRYDGDNKLNLVIENQKVATPQVSLDNPINLLVIEANQLIGITTDSNHFYWLRSSRKPIDHLAYSYLIFKISSQDATNIFGKN
>NZ_CP011304.1|WP_046660989.1|746326_747214_+|glutaminase
MNRLARLRVEDIQAWLGEVHLSDRKGQTPYYIPVLNQVNPEVFALQIHCLEGEILSWGDATVTFPLMSVIKPFLLLYILTHLGEDAVFRRVGKQASSYPFNSLTQLQEDCGFPRNPMINSGAIALADLLAGSTPESRCENLLLWLNEMGNCQLFLDRSVLESVHSYPNTHNQALSLELEKNGYISHRYLALETYNQICCLSGKIADLANLGKLILAAPFGEIILEIMTNCGLYEASQQFALEVGFPTKSGVSGALLSIVPEQGAIACYSPLLNEQGNSILGLNLLTKISHFVKEN
>NZ_CP011304.1|WP_046660988.1|745094_746315_-|molybdopterin-molybdotransferase-MoeA
MYSVKEAESIILTQIQPRQETEKVSLEAAFGRILAEDISSDLDFPYWDNSAMDGYAVRYEDVKDINPENPVTLKIIAEIPAGQAPEIIIQPGETARIFTGAMLPAGSDTIIMQENTQKQGERVAILIPPEKIGLFVRQRGTFYRAGNTLLKAGIAINSPEMAVLATAQATELTVFSRPQVAIFSTGDELINPDETLQKGQIIDSNRYALTAFVASLGAIPRPLGIIKDNPDLLRETIRKAINSSAIVLSTGGVSVGDYDYIEGILGELGGKILIGSVAIQPGKPLTFATFPNGCIYFGIPGNPVSALVSCWRFVQMAIKKLSGLTDYQNKFLRVITRDTLKSQGQREVYLWGKIEIIEGVYQFQLASGQHNSANLINLAGTNALAIIPQGKTTIQAGETVEVMIVS
>NZ_CP011304.1|WP_046660987.1|743937_744864_+|ACP-S-malonyltransferase
MKTAWIFPGQGSQALGMIGDLAESALGQERLEIAAKILGWSVLEKCQGDEETLSRTLYTQPCLFVVESILADLLQEKGHFPDLVAGHSLGEYSALYAARVFNFETGLNLVQNRSRLMDAAEGGKMAALMKFDRTILETVVNQTENVVIANDNSAEQVVISGTPEAVDLVLGQVKVKRVMPLKVSGAFHSPLMENAAIQFQQILELVNFRSAKVPVISNVNPSQPITDAEELKSYLIQQMTSSVRWREIMLKLLDVGVEKAIEVGPGKVLTGLIKRTVPAIELENISQLADISNGSEDVKLQGSLIGVG
>NZ_CP011304.1|WP_046660986.1|742713_743715_+|beta-ketoacyl-ACP-synthase-III
MSGFGPAVVITGCGSATPAQFLSNEELSQIVETSDEWIKSRTGIGKRHLADQSVSLSQLAAQAAIKALEMAQVSPRDIDLILLATSTPDDLFGSAAQVQSQIGANRAIAFDLTAACSGFLVGLVTATQFIRTGTYRNVLVIGADVLSRWVDWNDRATCVLFGDGAGAVVCQANDTKDNILGFELHSDGSQNGSLNLAYEGEELPLKQGVRVQKGTYKPLTMNGREVYRFAVAKVPEVIEKALYRANLTTSDIDWLVLHQANQRIMDAVSERLKLPPEKVISNLSEYGNTSAASIPLALDEAVRSGKVKKGDIIASSGFGAGLTWGGIIFRWGD
>NZ_CP011304.1|WP_046660985.1|741337_742393_+|phosphate-acyltransferase-PlsX
MAETALNRARIAVDAMGGDHAPNEIIAGSMRASEELDVEVLLVGDSERIEAYFQHHPRPKNLTIVHAEEVVAMDEEPITAIRRKPAASINVAMDLVKQNRADAVVSAGHSGAAMAAALLRLGRLKGIDRPAIGAVLPTMLAGKSVIILDVGANVDCKPKYLEQFALMGTIYSKYVMGVEEPQVGLLNIGEEASKGNDLALKTYELLENNQQIPFIGNAEGRDVLSGQFDVIVCDGFVGNVLLKFAEAVGGVILQILKEELPRGIQGKVGTALIKPNLKQIKQRMDHAEHGGALLFGVDGVCVISHGSSQAPSIFNAIRQAKNAVDNRVSERIQAYNDHHHQLKKLSVNGED
>NZ_CP011304.1|WP_046660984.1|739895_741188_-|D-alanyl-D-alanine-carboxypeptidase
MFSVFNLAVFGFLFGWLGGQSQPIANIPLISWQNQPIFDLPTAPDPRVAAIVADYLQDLAKKGLNSSQQRVLIETEWADLADHQGNLPASGASLTKIATTLAAVETWPLDHRFATRFYTTGELKNGVLEGDLIIEGSGDPLFVWEEAIAVGNGLDQLGIRQVKGDLIITGKFAMNFQTDPLKAGELLKIGLNQSKWSKETQKAFKSLPSGTQAPQVKILGMVRASQIRPENARLLLRHQSLTLTELLRQMNIYSNNVMSEMLAELLGGPAAVDAINTKITGVGAEEIQLINGSGLGVENRLSPRAVIEILKALDRKLANQPIKVADLFPVGGRDTKGTMQWRAIPKGVVIKTGTLAQVSALAGEIPTQERGKVWFVIMNAGSSNIEGFRNQQDRVLQALDQHWQILPEATKGSIPERSFLGDPSRISQGF
>NZ_CP011304.1|WP_103672690.1|752820_753291_+|DUF29-domain-containing-protein
MMTALYEEDFVLWTEKTAELLKRKEFDLVDWENLIEEVECMGKSERQAITSLLTVLIEHLLKLSYWESEKERNARHWIVEIAAFRAQLEQKIDSATLANHARDSWEKAYLTARKSLINARVVDKNAIPLESIFTLEQVLDGDWFPIDIEPFLETRP
>NZ_CP011304.1|WP_046660997.1|754127_755342_-|aminotransferase-class-V-fold-PLP-dependent-enzyme
MQNLDENSLDFAVSKPDLAEQRQEFRGLSNKVYFNFGGQGTLPKAGLEAIIDAHNFLQQQGPFSGRVNDWITRKTELLRQEMAQELGISPSTLSITEDVTVGCNIALWGVDWQAGEHILLTDCEHPGIMATVREIARRYHLEISTCPIRETLNGGNPIEVISAHLRPKTRVLVVSHVLWNTGQVLPLKEISQLCHHNSVTEKPVLVVVDAAQSVGCLPLDLSATGADCYAFTGHKWWCGPAGVGGLYIRPEIFPSLQPTFIGWRGIETDNRGQPIGWKPDARRFEVATSAYPQFEGLRATIAVHNAWGDGGQRYEKICQLAAYLWGELNTIKGVKCLKNSPPESGLVSFQIDSTISPQNLVQQLEKQGFLLRTLLDPLSVRACVHYFTLPSEIEQLVAAIKKLV
>NZ_CP011304.1|WP_046660998.1|755635_757072_+|TM0106-family-RecB-like-putative-nuclease
MLLTDDLLLDYQRCQRRAFLNLYGNSQEKDPERDFLLKLRQESQSHVKKVLQDSYPDYCSLTTPTSDILAAARETEALMRQGVSCIYHGVLLQSAYPVSLTGSPHLLIKQAGKSKFGDWIYYPLNIQLGRRPKPEYKLLATFYAYLLASMQGVFPGYAEIVLRRHNRYRVELNLWLTKLQEIIKKFGEMVINSQEPEVFISRQRCSLCHWYSHCYGIAQASQHLSLVPGVTPSRYQFLQSLGISTMESLALTCPTRMGEGMGVEVANQLQLQAQAIIENRAFRKSNGKTAYLSPLPRAEIEFYFDIEAEPEQNLDYLLGILRVDYRVNTQQFYPFLAEKPEDEGRIWQEFLTLVMQDYQAPIFHFSEYEVETIKRLGYLYKTPSSLINQLVSRCFDLHYYVVNSVTFPVESYSLKSLANWIGFQWRDRGVSGDQCVWWYDQWLKTGDRTLLAAILRYNEDDCRATFILKDWLLTYPTP
>NZ_CP011304.1|WP_103672738.1|757632_757857_+|hypothetical-protein
MFSPLFPLLLLLLSFLSLLWYQKTDNDIFKALAVSSLIFAIIWGLILVHWSIHLLGLLLLLKFRSPRFQFGARA
>NZ_CP011304.1|WP_046660999.1|757874_758255_-|hypothetical-protein
MNNNFFRSYSVNDSGLGCFLSLILVGLLLGSIGLGWLVNGFLILVAFLIISPVIAWGIFRWWLRRNLVEDSCPVCRYEFTGFNRTECQCPNCGEPLKVAGGKFIILTPPGTIDVQAIEVPTRQLED
>NZ_CP011304.1|WP_046661000.1|758483_759101_+|methylthioribulose-1-phosphate-dehydratase
MSDPRLSLVAAARRFYQLGWMLGTAGNLSAKVDDHSFWITASGKSKGKLTEQDFVRVDLTGKVRELAHQDNRPSAETSIHQVIYCLFPQAQACYHVHSVEANLVSRFAREDKLSLPPLEMLKGLGIWIENPQVFMPVFANYLDVPKIAAEIESRLSTFPPEIPALLISYHGVTVWGESLETTENYLEIVEYIFRYLVAAYQVKPW
>NZ_CP011304.1|WP_046663594.1|759353_759689_+|hypothetical-protein
MIINTRYLLTFIGLLALCLPVQANNTVYLSQSSNTATTFDSYRQECLQRARGEGLAADVAKDLCDCTIKKFQARYNLQQFRTLVQKSKTDKAAARTLASVGEACFDEILYE
>NZ_CP011304.1|WP_158524791.1|759881_767642_-|hypothetical-protein
MAVDAFYMLTGNPKGQVSTKLNGLGFTGTSSLLITYAENNPALLLGTIEHDLTDYLQDAGVTNLNTSLWGIADKAASALVMFAETLVSGYIPSEEEIFNVMGTRQLPTREMELRQTVTRLGNVSSTLATKLAMHYGNEDFGSQLIAATATKTLGGWLGDNLAYQLASVGSSIPARALYTRLYGNFTNTLLGFGSSAISQAFSEKFDIEDPLAQIAIDQVTASLTNHIFSGLTEAAFGKSFAVNYLGVDPYINLSLTKASIIGEVVNTGFGALQSFASTQLFNYVDKVWTGADLNNFGASIGGVIGGFIAPGIGNFLGSVIGGWAWDLIFDKDPRAYYSVYYNVAAGKFVSQFSFSADGGKTEVAQQMAQSASDTLQLIAGMIGGTPLSITATEYGHYEKEFVFNVGGSGRNSFSSIQAALDNGIIRQLKTLNIQAGDPYMKRLIALPSYNSDLKGLFTDLGVAKEYSVHKVDPILYGQAILNVDNADARKYLLDDWRRVQTRAKELTLDALPGDDGSEFIVGSDGSDDINAGVGNDLIYSDRGIDIINGGDGNDLLIIDYSSNQYAGSNVHPAGISYYDGFSQSYTCYYDDKDYSYDKVLFYSIEQFQITGTNGSDYIGTRDGNDTINGGGGNDTIEGGLGNDIINGGDGNDAIAAGGGSDVINAGTGDDTVANVSGDDIIDGGTGLDTISDLNYDSSNSAIILNELGGAATLLGTNIKNIERFGSVILGSGNDKIEFSSRFNNQEINSGQGNDTINGGLGIDIINGGDGNDLLIIDYSSNQYAGSNVHPAGISYYDGFSQSYTCYYDDKDYSYDKVLFYSIEQFQITGTNGSDYIGTRDGNDTINGGGGNDTIEGGLGNDIINGGDGNDAIAAGGGSDVINAGTGDDTVANVSGDDIIDGGTGLDTISDLNYDSSNSAIILNELGGAATLLGTNIKNIERFGSVILGSGNDKIEFSSRFNNQEINSGQGNDTINGGLGIDIINGGDGNDLLIIDYSSNQYAGSNVHPAGISYYDGFSQSYTCYYDDKDYSYDKVLFYSIEQFQITGTNGSDYIGTRDGNDTINGGGGNDTIEGGLGNDIINGGDGNDAIAAGGGSDVINAGTGDDTVANVSGDDIIDGGTGLDTISDLNYDSSNSAIILNELGGAATLLGTNIKNIERFGSVILGSGNDKIEFSSRFNNQEINSGQGNDTINGGLGIDIINGGDGNDLLIIDYSSNQYAGSNVHPAGISYYDGFSQSYTCYYDDKDYSYDKVLFYSIEQFQITGTNGSDYIGTRDGNDTINGGGGNDTIEGGLGNDIINGGDGNDAIAAGGGSDVINAGTGDDTVANVSGDDIIDGGTGLDTISDLNYASSNSAIILNELGGAATLLGTNIKNIERFGSVILGSGNDKIEFSSRFNNQEINSGQGNDTINAGLGIDIINGGDGNDLLIIDYSSNLFAGSTNYQGGIFYEFGGYYERYTCSYSNENFDQIRFSDIEQFQITGTNGSDHIVTRDGNDTINGGGGNDTIEGGLGNDVISGGDGNDAIAAGGGSDVIIGVKTGSTEPGKNEVDTLTGGEGRDTFILGDATSIFYDDGNTTNAGTSDYAIIADFNPTDDIIQIRRSSSDYLLTVSGSNTNLYINKPGSEPDELIAVINNQTALSLTASYFSYVSSPTLPSITLAVSPSSVTEDGTTNLVYTFTRTGSTTSALTANYTVGGTATLNTDYTRTGTNNTVTFAANSSTATITVDPTADTTVEPDETVTLTLASGTGYTVGTTTAVTGTIKNDDVTLPSITLAVSPSSVNEDGTTNLVYTFTRSGSTTNALTVNYTLGGTATLNTDYTRTGTTNTVTFAAGSSTATVTVDPTADTTVESDETVILTLASGTGYTIGTTTPVTGTIKNDDVTLPSITLAVSPSSVTEDGTTNLVYTFTRTGSTTSALTANYTVGGTATLNTDYTRTGTNNTVTFAANSSTATITVDPTADTTVEPDETVTLTLASGTGYTVGTTTAVTGTIKNDDVTLPSITLAVSPSSVTEDGTTNLVYTFTRTGSTTSALTANYTVGGTATLNTDYTRTGTNNTVTFAANSSTATITVDPTADTTVEPDETVTLTLASGTGYTVGTTTAVTGTIKNDDVTLPSITLAVSPSSVNEDGTTNLVYTFTRSGSTTNALTVNYTLGGTATLNTDYTRTGTTNTVTFAAGSSTATVTVDPTADTTVESDETVILTLASGTGYTVGTTTAVTGTITNDDFSQLSINNITVVEGQDSNAILTVTVNNPNPQPISVNYTTAPVNATANVDYTSKTGTLTIAANTSTATISIPILNDNLNEANETFAINLSNPVNATLTNNKGIVTISDTLTANVTTTLPANVENLTLTGTTNINGTGNTLNNIITGNSGNNILNGATGIDTLIGGLGNDTYQVDTTTDTITENANQGTDTVQSSVTYTLGNNLENLTLTGTANINGTGNTLNNVITGNSGNNILNGSDGNDTLIGGTGNDTLTGGAGGDQFTFNNRNEGIDTITDFLSSQGDKIAVSAAGFGGGLAAGVSITAAQFVLGTTALNASNRLIYNTITGGLFFDGDGTGTLAAIQIATLSSKPTLTASDILVLV
>NZ_CP011304.1|WP_046661002.1|768541_769768_-|ISL3-family-transposase
MPSNPQLKLMTELLHLEGVVVTNYQIITDIGIVLHLENMSRESQCIHCGSKTEKVHQNNELTIRDLPFGEQALYLRINRRQMRCEKCGKKFTEELNYLPKKRTYTDRFRKKIVAEVLNSDLKNTAERNGVSEQEIETMLKDLGEELITAKPQGLKKLGIDEIAMIKGKGNYYAVLVNIDTGKIIGLGEKRTEEALTEYLKHWGEEVLSQIEEVSIDLWIGYKNVAEKLMPQAQIVGDRFHVMKQVNNELDEARKEVKREAAKIKNKKNKENILAGIAKSKYALLKNEGDLVEKERKKLEEIYKVSPKLGEMHKLKEEFREVFEKNTEGNEGLFALSDWLKKAMAYFPKSCQTIRRWIDEITAYFDNRTTQGTVEGINNKLKVIKRRGYGFRNFKNFSLRCLLNWHFAS
>NZ_CP011304.1|WP_046661003.1|770188_771199_-|hypothetical-protein
MKQTTANYDEPWKEALTEYFEAFLHFFFPEVHQLIDWTKIPESLEKELKRITASAKTKKRFADKLYKVWLLRGEEIWILIHIEIQSQYEENFPQRMYIYNYRAFDLYQKPVISLAILGDERVNWRPDSYNYTIAGCEVSLKFPTVKLLDYEENWSELETSSNPFAIIVMAHLKTKATTGKLPEREQWKWRLIRGLYEKEFEREQIIKLFEIIDNMMTLSPELQSSLESKIKQFEEERTMPLISNMELRGRKIGEEIGELRGIERGKEIGKEIGALENARDFVKKVLENRLGDIPGDIGQCLNDASVISVLEEMLKAALIVNSFEECRKSFSIIINK

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Crispr_ID: NZ_CP011304_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011304_6

1045396-1045495

TypeV-U4

Consensus_repeat	Method
TTGTCAAAAGACAAGCTGTCAAACTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011304_6

>merge|NZ_CP011304|6|1045396-1045495|CRISPRCasFinder
TTGTCAAAAGACAAGCTGTCAAACTTGGTGTAGAATGAATCAATGGGACAGTTAAAAGCAAACTTTTACTTTTTTGTCAAAAGACAGGCTGTCAAACTTG

>NZ_CP011304|6|6|1045396-1045495|CRISPRCasFinder
TTGTCAAAAGACAAGCTGTCAAACTTG	GTGTAGAATGAATCAATGGGACAGTTAAAAGCAAACTTTTACTTTT
TTGTCAAAAGACAGGCTGTCAAACTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011304.1\|WP_046661235.1\|1042451_1042745_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046661241.1\|1048267_1048996_-\|ASPOR	unknown	unknown	gnl\|CDD\|367137
NZ_CP011304.1\|WP_002731626.1\|1039689_1040772_+\|photosystem-II-q(b)-protein	unknown	unknown	gnl\|CDD\|130221
NZ_CP011304.1\|WP_002800853.1\|1053941_1054274_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046661243.1\|1049162_1052915_+\|NACHT-domain-containing-protein	unknown	unknown	gnl\|CDD\|227922
NZ_CP011304.1\|WP_046661236.1\|1043217_1044897_-\|DUF3352-domain-containing-protein	unknown	unknown	gnl\|CDD\|371750
NZ_CP011304.1\|WP_158524792.1\|1038275_1038464_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046661240.1\|1046346_1048074_+\|succinate-dehydrogenase/fumarate-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|180319
NZ_CP011304.1\|WP_002733470.1\|1042198_1042462_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NZ_CP011304.1\|WP_046661230.1\|1038621_1039512_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_071846420.1\|1041621_1042110_+\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NZ_CP011304.1\|WP_002732729.1\|1045013_1045334_-\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|184253
NZ_CP011304.1\|WP_046661237.1\|1045526_1045904_+\|plastocyanin	unknown	unknown	gnl\|CDD\|235060
NZ_CP011304.1\|WP_002800852.1\|1054281_1054527_+\|DUF4926-domain-containing-protein	unknown	unknown	gnl\|CDD\|379816
NZ_CP011304.1\|WP_002732229.1\|1053279_1053483_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375932
NZ_CP011304.1\|WP_046661231.1\|1041040_1041553_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379256
NZ_CP011304.1\|WP_046661226.1\|1037107_1037824_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340868
NZ_CP011304.1\|WP_046661247.1\|1055117_1055336_+\|DUF2283-domain-containing-protein	unknown	unknown	gnl\|CDD\|378367
NZ_CP011304.1\|WP_002762148.1\|1054684_1055020_+\|XisI-protein	unknown	unknown	gnl\|CDD\|341357
NZ_CP011304.1\|WP_046661244.1\|1053479_1053749_+\|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family	unknown	unknown	gnl\|CDD\|224937

Protein	Function_ID	Function_description	E-value
NZ_CP011304.1\|WP_046661226.1\|1037107_1037824_-\|hypothetical-protein	gnl\|CDD\|340868	cd06179, MFS_TRI12_like, Fungal trichothecene efflux pump (TRI12) of the Major Facilitator Superfamily of transporters. This family includes Fusarium sporotrichioides trichothecene efflux pump (TRI12), which may play a role in F. sporotrichioides self-protection against trichothecenes. TRI12 belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	0.00856315
NZ_CP011304.1\|WP_002732229.1\|1053279_1053483_+\|hypothetical-protein	gnl\|CDD\|375932	pfam18506, RelB_N, RelB Antitoxin alpha helical domain. This is an alpha helix domain found in the N-terminal region of antitoxin RelB. RelE-RelB (RelBE) is a toxin-antitoxin (TA) protein complex. It is suggested that the toxic action of RelE is counteracted by antitoxin RelB, which wraps around RelE, blocks its active site and prevents sterically the binding to the ribosomal A-site.The long N-terminal alpha-helix of the tightly bound antitoxin RelB covers the presumed active site of the toxin RelE that is formed by a central beta-sheet.	1.82243e-11
NZ_CP011304.1\|WP_046661237.1\|1045526_1045904_+\|plastocyanin	gnl\|CDD\|235060	PRK02710, PRK02710, plastocyanin; Provisional.	1.1168e-69
NZ_CP011304.1\|WP_046661236.1\|1043217_1044897_-\|DUF3352-domain-containing-protein	gnl\|CDD\|371750	pfam11832, DUF3352, Protein of unknown function (DUF3352). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 538 to 575 amino acids in length.	1.41702e-176
NZ_CP011304.1\|WP_046661240.1\|1046346_1048074_+\|succinate-dehydrogenase/fumarate-reductase-flavoprotein-subunit	gnl\|CDD\|180319	PRK05945, sdhA, succinate dehydrogenase/fumarate reductase flavoprotein subunit.	0
NZ_CP011304.1\|WP_046661243.1\|1049162_1052915_+\|NACHT-domain-containing-protein	gnl\|CDD\|227922	COG5635, COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms].	4.76704e-39
NZ_CP011304.1\|WP_002733470.1\|1042198_1042462_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	1.46248e-14
NZ_CP011304.1\|WP_071846420.1\|1041621_1042110_+\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.41711e-16
NZ_CP011304.1\|WP_002731626.1\|1039689_1040772_+\|photosystem-II-q(b)-protein	gnl\|CDD\|130221	TIGR01151, Photosystem_QB_protein, photosystem II, DI subunit (also called Q(B)). This model describes the Photosystem II, DI subunit (also called Q(B)) in bacterial and its equivalents in chloroplast of algae and higher plants. Photosystem II is many ways functionally equivalent to bacterial reaction center. At the core of Photosystem II are several light harvesting cofactors including plastoquinones, pheophytins, phyloquinones etc. These cofactors are intimately associated with the polypeptides, which principally including subunits DI, DII, Cyt.b, Cyt.f and iron-sulphur protein. Together they participate in the electron transfer reactions that lead to the net production of the reducting equivalents in the form of NADPH, which are used for reduction of CO2 to carbohydrates(C6H1206). Phosystem II operates during oxygenic photosynthesis and principal electron donor is H2O. Although no structural data is presently available, a huge body of literature exits that describes function using a variety of biochemical and biophysical techniques. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis].	0
NZ_CP011304.1\|WP_002732729.1\|1045013_1045334_-\|c-type-cytochrome	gnl\|CDD\|184253	PRK13697, PRK13697, cytochrome c6; Provisional.	2.05842e-46
NZ_CP011304.1\|WP_046661241.1\|1048267_1048996_-\|ASPOR	gnl\|CDD\|367137	pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family. This family consists of taurine catabolism dioxygenases of the TauD, TfdA family. TauD from E. coli is a alpha-ketoglutarate-dependent taurine dioxygenase. This enzyme catalyzes the oxygenolytic release of sulfite from taurine. TfdA from Burkholderia sp. is a 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase. TfdA from Alcaligenes eutrophus JMP134 is a 2,4-dichlorophenoxyacetate monooxygenase. Also included are gamma-Butyrobetaine hydroxylase enzymes EC:1.14.11.1.	6.78602e-09
NZ_CP011304.1\|WP_002800852.1\|1054281_1054527_+\|DUF4926-domain-containing-protein	gnl\|CDD\|379816	pfam16277, DUF4926, Domain of unknown function (DUF4926). This family consists of uncharacterized proteins around 70 residues in length and is mainly found in various Caulobacter, Microcystis and Cyanothece species. The function of this family is unknown.	2.9023e-15
NZ_CP011304.1\|WP_046661231.1\|1041040_1041553_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379256	pfam13551, HTH_29, Winged helix-turn helix. This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.	1.23677e-05
NZ_CP011304.1\|WP_046661247.1\|1055117_1055336_+\|DUF2283-domain-containing-protein	gnl\|CDD\|378367	pfam10049, DUF2283, Protein of unknown function (DUF2283). Members of this family of hypothetical bacterial proteins have no known function.	6.97166e-16
NZ_CP011304.1\|WP_002762148.1\|1054684_1055020_+\|XisI-protein	gnl\|CDD\|341357	cd16382, XisI-like, XisI is FdxN element excision controlling factor protein. This family contains XisI proteins, also known as FdxN element excision controlling factors, and similar proteins. FdxN element is excised from the chromosome during heterocyst differentiation in cyanobacteria. This is accomplished by the large serine recombinase XisF (fdxN element site-specific recombinase). The xisH as well as the xisF and xisI genes are required. XisI may function as recombination directionality factor (RDF), and needs XisH which may function as an endonuclease.	7.8288e-54
NZ_CP011304.1\|WP_046661244.1\|1053479_1053749_+\|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	2.68262e-08

>NZ_CP011304.1|WP_002732729.1|1045013_1045334_-|c-type-cytochrome
MKRLLISLCLLLAVVTFGMARPALADGASIFSANCASCHMGGKNVVNAAKTLKKEDLVKYGKDSVEAIVTQVTKGMGAMPAFGGRLSAEDIEAVANYVLAQAEKGW
>NZ_CP011304.1|WP_046661236.1|1043217_1044897_-|DUF3352-domain-containing-protein
MKLRSFFYILGATVIILLVVATASFAWILADSPLSLLKGGVLREPMAAIFVPKQAPVMVSLLVNPERLESFGQLIATPANRRRSHQQIKDLEKSLLGKTGLNYQKEIKPWLGEEITLAVTSLDFDRDTDNGIQPGYLLAIQSKDGERAKEFLQASYSKQAVSGKFDLVFELYKGVNLIYQRPLTAGDNNRFLASAVVGDTVLFANNIKVLREALNNVQVPDLNLKNSPDYREALKNITEPRIAIVYGNLPPLSAWIANQPVPESPEAKQRLATAFTLKSGGIVAQTALIGVLGQDDQAPILSSPVGALSFIGENSLLVAASRDLNRFWTQVEEGLEADSPLQELITQVLNRFQSPLGLNLPEDVFSWVRGEYSLALVPSSKGMEPDSVFLGERVMGVEVDSAIEHLDELARSRGYNVVNLPLLDRTVTAWTKLTTAVPGGKAQLETLVTGVHTRVDNYEIIASSVEAMGLALSAQKNPILSSGKFRQAITALPAENDGYFYVDWRQLQPVIEAKFPIVRVLELSIKPLFNNLRSLTISSQGSENSVRRGTIFFNLGVKS
>NZ_CP011304.1|WP_046661235.1|1042451_1042745_-|hypothetical-protein
MNITDVQVNLSTSEDFLDSETLAQIDLMQQKIQQYLQTLSLENLKTILEFAAYLSDKESEQATQEIREIPNIIEKLKEAEMDLQSGHLIDWKNSDDL
>NZ_CP011304.1|WP_002733470.1|1042198_1042462_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MIYKVCLTAKANKVYSEADSVLRKKIAKCLKILQETPKNHPQIKALKGEFAGKYRFRVGDYRVIYIVDDSQSQVIVLLIEHRSQAYR
>NZ_CP011304.1|WP_071846420.1|1041621_1042110_+|IS630-family-transposase
MGLKPIIRKVWAPIGERPSALVHPRYEWLYVYGFVEPKTGKTLWYLIPRVNHQWLSLVYQSLAKDVVLSAEKIVLLVQDNAGWHRSQKLEVPDGIMLDFLPAYSPELQPAERLWSLVDEPLVNQYFETIEEIEEILITRCQYLETMTNEIKNLTNYHWLTYD
>NZ_CP011304.1|WP_046661231.1|1041040_1041553_+|helix-turn-helix-domain-containing-protein
MPKKAYLAEHLSSEELKDRYRASQDSVETRRWHLLWKISLGWTIKNAAVAVGLDYQYSFKILKRYNELGEEGVKNLKKKSHEHRRGKEPLLKEEQWQKLKEELKKRPADGGIWTGPKVARWIEKETGREKVWNQRGWDYLKKFRYSCQEPRPKHKNSNQLNQKNLSRISQ
>NZ_CP011304.1|WP_002731626.1|1039689_1040772_+|photosystem-II-q(b)-protein
MTTTLQQRESASLWEQFCQWITSTNNRLYVGWFGVIMIPTLLTATTCFIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVIFHFLLGVFCYLGRQWELSFRLGMRPWICVAYSAPVSAATAVFLIYPIGQGSFSDGMPLGISGTFNFMFVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLVRETTEIESQNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLGAWPVIGIWFTAMGVSTMAFNLNGFNFNQSILDSQGRVIGTWADVLNRAGIGMEVMHERNAHNFPLDLASGEQAPVALTAPAING
>NZ_CP011304.1|WP_046661230.1|1038621_1039512_-|hypothetical-protein
MTRQPHDQFAKQYLEELLSPLGKVEVSKEVADETRQVDIFFSPHPNMRGNAQFLGLLGQMVTTSTLLEPFRNAPNRTEIRNCILKLFSIFAELQRKGKREKTELNEDDLPRLWILATSISFQILESFDAKLELENWTEGIYFLSPSHRTAIIAINQLPITPDTLLLRLLGRGKTQSQAVRELLELPSGDSFRQNVMELLISWRVSVEINNLLESEDREVFMALSQSYLEWKEATKREGLQQGQRQIIENLMQVRFGELDESLIKVIDELLKLSPMESSRLLLESSREDLIRRFLSE
>NZ_CP011304.1|WP_158524792.1|1038275_1038464_-|hypothetical-protein
MPPDRTIPSNEEPIVARETDKATRFHFNKVAIASLLSITAKTFSGDNSSNIWTTEISKEQSP
>NZ_CP011304.1|WP_046661226.1|1037107_1037824_-|hypothetical-protein
MSSVFRLPPYFSPSVQRRVMKTLAAKKTRQFLTWAAACASFLILWAWNWQLVLATLTGVGAMIGVYHLQGQNWPSLWLWGRAFFSADSGKLTLAVVCGGLGSLATYLAVAIWTYAENRWLALASILQGFGTVLTLILLGWHFLDHRGQNESKNFDRWLEKLTVNDPLMRLMAVRRLSEMELSPSRREQCQEYFRYLLSRETDAQVRSALLDNFSGQETIKPQPLQIPLQVKKSLFKYD
>NZ_CP011304.1|WP_046661237.1|1045526_1045904_+|plastocyanin
MKKLGLLVATVVLVVSSFFFNTASAAAETFTVKMGGDAGTLQFDPPTLTIKAGDTVKWVNNKLSPHNIVFDSTKVPEAQASKLSHKGLAFSAGESFESTFSEPGTYTYYCEPHRGAGMVGTITVQ
>NZ_CP011304.1|WP_046661240.1|1046346_1048074_+|succinate-dehydrogenase/fumarate-reductase-flavoprotein-subunit
MKEHDVVIVGGGLAGCRAALEIKRLNPTIDVAVVAKTHPIRSHSVAAQGGIAAALQNVDPKDNPKAHAYDTVKGSDFLADQDAVDILTQEAPEVIIELEHLGVLFSRLEDGRIAQRAFGGHSHNRACYAADKTGHAMLHELVSNLHRNQVKIYDEWYVLRLILEEGTAKGVVMYQIATGQLEILRAKAIMFGTGGYGRVYNTTSNDFACTGDGLALSAKAGIPLEDMEFVQFHPTGLYPVGVLISEAVRGEGAYLINSEGRRFMEDYAPSRMELAPRDITSRAITLEIRAGRGVNLDGSAGGPFVYLDLRHLGREKIMSRIPFCWEEAHRLVGVDAVEEPMPVRPTVHYCMGGIPVNTDGRVRLSADTLTEGFFSAGECSCVSVHGANRLGSNSLLECVVYGRRTGKSIAKYVEKRAFPVFNPDIYLQDAKEEITALLTKKGTIRIGQLRQQFQDCMTQHCGVFRTEATMREGIKQIGELKRQYEQIYLDDRGDCWNTELIEAWELQSLMVVGEIILTSALNRQESRGAHSREDFPQRDDKNFLQHTLAYYSPSGIDIDYMPVVIQDFTPVERKY
>NZ_CP011304.1|WP_046661241.1|1048267_1048996_-|ASPOR
MSSILTLSPFTQSTATLKNHLKKNGFFVFDNPCGDRWLQGLEDITQATPVIQTNGEIIYPIKANPDAMGKSDAQSPGIGLLPHTEWSYKAIPPKYLCLRCKTPDRWGGGATTLVKFDDLMRHFTLEEQHFMAAQPQYFMSKDGKESCFAPIWQRDAEIIRFSYNVLVYREFSPDLSKPIASGLDSRLMALCGKFLALFEAHHVPLYLKAEQILIMDNYTCLHSRQSYIDPNRCLERVMFDVP
>NZ_CP011304.1|WP_046661243.1|1049162_1052915_+|NACHT-domain-containing-protein
MSKERKQRGILATPTGKQKLQEAKANGRNELGKKLTYDNIAEKAVVDKKTVERFMRRLQLIDRDNALAICQALGLEITDVVDSDEWNYDESSNTEINWTEICQQALINKPLRRFATDEPCELEIFVPLGLVERKKQQRRPLNQEMERNQVYEVEEKEEITRRFEHEEFLNYIGLGTTQGESDKNIAIIGEPGAGKTTLLQNLALIISDQQKGLPICVSLGALSKERSLIGYLEETWLRDGLAVGEVKESDKADFRQLFDKKQVWLLLDGLDEYSADSPVEALTWIENEVRSGYLQKARVVVSCRVNVWDANINPLRAFVTYKTLDFADFQRDQFIRQWFGKKGNIALGEQLIACLQETGRERIWELVKNPLRLVLLCQIWSLGEGALPETKAQFYQRYLPYFYEWKREIRDLTDNDELQELLHQALGKLAIASLGGESRYRMPRKLAKAIMGNDLFKLAVDFGWLNIVDRDQATDEAVYAFFHPTFQEFFAACGVEDWDFFLPRNHVDRPVEGKVYRIFEAKWKEVILLWLGRSDVKDEEKEAFIKALVEFKDGCGEWNLPEVDRGFYEYRAYFMAANGIKEFNTCSFADKIVHQIIKWNIVNDKPLYMTTGYKLDFGNHLKTHVNKVSSVSVLADHISVYYASLQETDTKRVISKLIDLSLENNSILENNSIIELLEIIGQDNKNAIIALINMIESLSYNDEIRSHAIESLGKIGKGNTEAISELINIIKSTSYNYEIRSHAIKSLGEVGKGNIEAISELINIIKSNESTFYFYNDKNGTLNHAVESLGKIGKGNIEAISELINMIKSTSYNDAIRSQAIKSLCEIGKGNTEAISELINIINSTSYNDKIRSRAAYSLGRIESGNSEAISALIRLMQSPDSKIVNFALKSLIEIGKKNSDIISILVDIMQSHSPDSKIGDFAIKSLVEIGKENSDMIPILVDIIQSHSIKATIVSTALENLAKIGQGNLQAINTLISILESLQSQDMSLQSEDMMSESCRSRDLILASAAESLGEIGQSDPRTIAVLIHALRPLYKNYFLMQKLATRSLIKIGINNSNVINQLVNSLQSLNDQESSYWWEIIILEDIGKRDKNVIKILKKLLLVASNNNHSYSHRINLASALGKVEPGNSEAYETLIEIFISTQNLDAIKTLTEILEDKPISLVVAQKIGDYFVNNISKKMSISKKYYETIYAFFYKFTQIYSYGKFYEIWNNSFYAFQAVQINDEIDEVSAKLLQMLEKYRKKPRKKQ
>NZ_CP011304.1|WP_002732229.1|1053279_1053483_+|hypothetical-protein
MNIKDYPFAQDLITDNQGQIQQVIINFEDYQQIIETYEDTGLYRAMIDVKDETPLTLEEALIELEKE
>NZ_CP011304.1|WP_046661244.1|1053479_1053749_+|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family
MKINYLPTFIKDLKDLKSTSPYSVIKNLVFTDILAVKQLSEINNLKKLKGEYNAYRIRIGDYRIGFFIEEDTITFARVLHRREFYRYFA
>NZ_CP011304.1|WP_002800853.1|1053941_1054274_+|hypothetical-protein
MKLPNADQANLGDKLERYCLNPEHSKGKHKALLFKQRLGITLANKEILENALKKAVMEGEAELYKIDQYGTHYDLKFNLCTDIGESLILSCWIVQITENFPRLTNVYPIN
>NZ_CP011304.1|WP_002800852.1|1054281_1054527_+|DUF4926-domain-containing-protein
MMNTIQEYDLVALTEDVTATHKTTHQPILLRRGQMGTVLMSFNQQAFLIDFTDQNGQTFAMETVDHSKLLRLISEPELVSV
>NZ_CP011304.1|WP_002762148.1|1054684_1055020_+|XisI-protein
MDKLNHYRKIIHQILVPYSQIIYNNADIQNRLAFDPQNDQYLVISEGWQQNQRYHDCLIHLEIINEKIWVQCDNTEDGITKELLSAGIAKEDIVLGFHEPKIRQYTGFAVA
>NZ_CP011304.1|WP_046661247.1|1055117_1055336_+|DUF2283-domain-containing-protein
MKITYFQDTDTLYLEFNNNPIVETQEINENTLADLDQQGNICAITLEHAKSLTDLNAFSLETIVAPQLASSL

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Crispr_ID: NZ_CP011304_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011304_7

1133024-1133137

Orphan

Consensus_repeat	Method
GCTTTTTCCCCAATTTCTGTCACTGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011304_7

>merge|NZ_CP011304|7|1133024-1133137|CRISPRCasFinder
GCTTTTTCCCCAATTTCTGTCACTGATGTTGTAGTAGTTTCCCCGATAGCTGCCGCTTTTTCTATAACGGGGTCCACCGTTTCTTGAGCTTTTTCCTCAATTTCTGTCACTGAT

>NZ_CP011304|7|7|1133024-1133137|CRISPRCasFinder
GCTTTTTCCCCAATTTCTGTCACTGAT	GTTGTAGTAGTTTCCCCGATAGCTGCCGCTTTTTCTATAACGGGGTCCACCGTTTCTTGA
GCTTTTTCCTCAATTTCTGTCACTGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011304.1\|WP_046661319.1\|1149409_1149991_+\|DUF3727-domain-containing-protein	unknown	unknown	gnl\|CDD\|372165
NZ_CP011304.1\|WP_046661309.1\|1129295_1132619_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238121
NZ_CP011304.1\|WP_103672714.1\|1126451_1127146_-\|IS1-family-transposase	unknown	unknown	gnl\|CDD\|224576
NZ_CP011304.1\|WP_046661303.1\|1123321_1123741_+\|YraN-family-protein	unknown	unknown	gnl\|CDD\|376717
NZ_CP011304.1\|WP_002738997.1\|1128470_1128707_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046661311.1\|1133745_1133934_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238121
NZ_CP011304.1\|WP_004268065.1\|1122473_1122851_+\|DUF3110-domain-containing-protein	unknown	unknown	gnl\|CDD\|371489
NZ_CP011304.1\|WP_046661302.1\|1121932_1122394_+\|DUF2996-domain-containing-protein	unknown	unknown	gnl\|CDD\|371420
NZ_CP011304.1\|WP_046661313.1\|1136977_1138135_-\|magnesium/cobalt-transporter-CorA	unknown	unknown	gnl\|CDD\|213362
NZ_CP011304.1\|WP_002780413.1\|1134098_1135082_+\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|180982
NZ_CP011304.1\|WP_046661307.1\|1127482_1128406_+\|UPF0104-family-protein	unknown	unknown	gnl\|CDD\|223469
NZ_CP011304.1\|WP_046661304.1\|1124190_1124991_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NZ_CP011304.1\|WP_046661314.1\|1138326_1139355_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|235066
NZ_CP011304.1\|WP_046661320.1\|1150237_1151068_-\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|334323
NZ_CP011304.1\|WP_046661317.1\|1144907_1148324_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|274377
NZ_CP011304.1\|WP_046661316.1\|1140852_1144182_+\|helicase	unknown	unknown	gnl\|CDD\|197275
NZ_CP011304.1\|WP_046661315.1\|1139379_1140744_+\|NAD-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143418
NZ_CP011304.1\|WP_046661305.1\|1125265_1126138_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046661308.1\|1128824_1129181_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046661318.1\|1148549_1149362_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732

Protein	Function_ID	Function_description	E-value
NZ_CP011304.1\|WP_046661309.1\|1129295_1132619_+\|hypothetical-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	8.35864e-95
NZ_CP011304.1\|WP_103672714.1\|1126451_1127146_-\|IS1-family-transposase	gnl\|CDD\|224576	COG1662, InsB, Transposase and inactivated derivatives, IS1 family [DNA replication, recombination, and repair].	3.29419e-31
NZ_CP011304.1\|WP_046661303.1\|1123321_1123741_+\|YraN-family-protein	gnl\|CDD\|376717	pfam02021, UPF0102, Uncharacterized protein family UPF0102. The function of this family is unknown.	1.3758e-33
NZ_CP011304.1\|WP_046661311.1\|1133745_1133934_+\|hypothetical-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	8.83303e-10
NZ_CP011304.1\|WP_046661313.1\|1136977_1138135_-\|magnesium/cobalt-transporter-CorA	gnl\|CDD\|213362	cd12828, TmCorA-like_1, Thermotoga maritima CorA_like subfamily. This subfamily belongs to the Thermotoga maritima CorA (TmCorA)-family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. Members of this subfamily are found in all three kingdoms of life. It is functionally diverse subfamily, in addition to the CorA Co2+ transporter from the hyperthermophilic Thermotoga maritima, it includes Methanosarcina mazei CorA which may be involved in transport of copper and/or other divalent metal ions. Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	2.49782e-170
NZ_CP011304.1\|WP_004268065.1\|1122473_1122851_+\|DUF3110-domain-containing-protein	gnl\|CDD\|371489	pfam11360, DUF3110, Protein of unknown function (DUF3110). This family of proteins has no known function.	7.75779e-50
NZ_CP011304.1\|WP_046661302.1\|1121932_1122394_+\|DUF2996-domain-containing-protein	gnl\|CDD\|371420	pfam11210, DUF2996, Protein of unknown function (DUF2996). This family of proteins has no known function.	3.75314e-71
NZ_CP011304.1\|WP_046661319.1\|1149409_1149991_+\|DUF3727-domain-containing-protein	gnl\|CDD\|372165	pfam12527, DUF3727, Protein of unknown function (DUF3727). This domain family is found in bacteria and eukaryotes, and is approximately 100 amino acids in length.	3.59646e-30
NZ_CP011304.1\|WP_002780413.1\|1134098_1135082_+\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|180982	PRK07452, PRK07452, DNA polymerase III subunit delta; Validated.	0
NZ_CP011304.1\|WP_046661307.1\|1127482_1128406_+\|UPF0104-family-protein	gnl\|CDD\|223469	COG0392, COG0392, Predicted integral membrane protein [Function unknown].	6.23898e-33
NZ_CP011304.1\|WP_046661304.1\|1124190_1124991_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	5.53064e-15
NZ_CP011304.1\|WP_046661314.1\|1138326_1139355_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|235066	PRK02746, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase PdxA.	0
NZ_CP011304.1\|WP_046661320.1\|1150237_1151068_-\|metal-ABC-transporter-permease	gnl\|CDD\|334323	pfam00950, ABC-3, ABC 3 transport family.	1.49351e-71
NZ_CP011304.1\|WP_046661317.1\|1144907_1148324_+\|transcriptional-regulator	gnl\|CDD\|274377	TIGR02987, m6_adenine_and_m5_cytosine_DNA_methyltransferase, type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. [DNA metabolism, Restriction/modification].	1.35205e-23
NZ_CP011304.1\|WP_046661316.1\|1140852_1144182_+\|helicase	gnl\|CDD\|197275	cd09178, PLDc_N_Snf2_like, N-terminal putative catalytic domain of uncharacterized HKD family nucleases fused to putative helicases from the Snf2-like family. N-terminal putative catalytic domain of uncharacterized archaeal and prokaryotic HKD family nucleases fused to putative helicases from the Snf2-like family, which belong to the DNA/RNA helicase superfamily II (SF2). Although Snf2-like family enzymes do not possess helicase activity, they contain a helicase-like region, where seven helicase-related sequence motifs are found, similar to those in DEAD/DEAH box helicases, which represent the biggest family within the SF2 superfamily. In addition to the helicase-like region, members of this family also contain an N-terminal putative catalytic domain with one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue), and have been classified as members of the phospholipase D (PLD, EC 3.1.4.4) superfamily.	1.50902e-28
NZ_CP011304.1\|WP_046661315.1\|1139379_1140744_+\|NAD-dependent-succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143418	cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.	0
NZ_CP011304.1\|WP_046661318.1\|1148549_1149362_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	4.15384e-129

>NZ_CP011304.1|WP_046661309.1|1129295_1132619_+|hypothetical-protein
MNYQYRVGGSLAYNHPTYIERNADRELLTALKNGQFCYVFNCRQMGKSSLRVRVTHILQQLGMDCASVDITSLGSNDNLSQWYNGVITRLFLGFNLTGKINLKSWLREREDLPPVQRLGQFIEEVLLVYCRGEKIYIFIDEIDKILSLQFSLDDFFSLIRYCYNQRAENAQYERITFALFGVATPADLIREKTQTSFNIGQAIELTGFNLAEIAPLAAGLSSQSNYQSDCLEKVIFWTGGQPFLTQKICQLLRESNLDIETLIKERVINNWESHDEPVHLRTIADRLLRNQDKAGRLLGIYQQILEKGAIAYDDSPEQGELRLSGLVVKKDNQLVVYNPIYREIFNFNWVEKQLEQLRPYSEALAAWQQSNYTDESRLLRGKALNNALDWSQGKSLSNLDYQFLTASQNLDKREAEISLETQRQANKILAIAHQKATKRIQIGSVILIASLLGSLLAFIQVKQAWQQVKSAQLGIQLQRNGDSYWQQFQFEQLESLMAAMQAVNSLKNIVTDDQTLSKYPATSPIITLQQILDRIQEKNQLQGHRGTIYSVSISPDRQKIATASQDGTVKIWNQKGENVQTLTGHQGAVYSVSFSPDGQKIATASEDKTAKIWNLQGQNLVTYPDHQESVYSVSFSPDGQKIVTTSRDKTARLWNLSGQTLQVFKGHKKSIDAAIFSPDGQKIATASRDGTIKIWDLSGKIILSLGQDNIGAFYSVNFSPDGQKIAGAAADKTAKIWDLQGNLIATFRGHQDFVNSVNFSPDGQFIITASSDGSAKIWGLQGEEITTLRGHQESVFTAVFSQDGKEVVTGSSDETAKIWQLNNLNQAKADNTSVTINYQGNIIAIANKDGQITLLDSHGKKIREFTTKMRSIYSIAFHPDSNQIAITGRNGKVQIWSKKGTMLQEFTASQVPIYSLAFNGEGTAIITGTSEGKIQYWHLSNHRPQLINSWTVDDSIIYDLVFSPDHQKIATATRGKIKIWDLQGNLLKEIKTDSFPVYGVSFSPDGEKIAAISRDGTARRWDMDGNLRSEFKIEEDIVYGIAFSPNGQEILIIARDGQKHRWPLEREYNYLQKLLDRGCLWLGDYLKNRPEKREALSLCTGKIKPSN
>NZ_CP011304.1|WP_046661308.1|1128824_1129181_-|hypothetical-protein
MKKTFFTSIAVSATLVSGIVLGTLDAGSASACPFAKGKSIFGSNNSFPVDANKLILGVAAATGAITVAGVLSYRRFHSGQPAEDATANLPSVFPIPIPPAALNAAVEAEEAAETSKIS
>NZ_CP011304.1|WP_002738997.1|1128470_1128707_-|hypothetical-protein
MLKGATLPPEVKMGNSTTFSDTPLHKDHHTWEHLKQAIAASSGFRRWQQEQLESGKNRDDADARICSYLRETLETLAY
>NZ_CP011304.1|WP_046661307.1|1127482_1128406_+|UPF0104-family-protein
MYKKILRFAPIILSLSLFILAVWAISQEFKHYTFAQLLASLDHITTSHKLEAIFCMALGYLSMTGYDRLGFYYINHPLALGTIIRTAFISYAFGNTIGLTLFSGTAIRYRFYAPAGVGVVDIAKVITFTHLSFWLGMLGIGGLSFLVDPQRIPQLLKLPFLTTKPLGIIFLLLVAGYFFLTISYKKPIKIGQENIYLPPWNLSLALILVTFIDWILAARVLYLLLPSNYNTSFLGFFGLYVFAMTAGVLSNVPGGIGVFEFILLRLRPEYVSTGELLGSLIAYRAIYYFLPLIVAFVWLLGYETRRK
>NZ_CP011304.1|WP_103672714.1|1126451_1127146_-|IS1-family-transposase
MQCPECKSTHIRKNGINKQGKQNHICVTCGRQFINNYEKQKGYDEKTKRECLTAYVNGMGFRGIERLKGVHHTTVINWVKSVGELLPVAYDPETIPEVGELDELETFVGSKKTKFWVWTAVDHFKKGILGWVIGDHSSETFRPLWELVKSWGCYFYVSDGWSVYPCFIAEGDHIISKTYMTRVEGENTRLRHYLARLHRKTLCYSKSTEMLGYSIRLLIHYLKFQEVPIPY
>NZ_CP011304.1|WP_046661305.1|1125265_1126138_+|hypothetical-protein
MNRPGNRFTESPKTPPTPEVEIQEVPLESPHTEADLAVESATPEEVKRQQPIPPPSHLRQYRAIGLVYGHYQRSEEQLTKGNILTADGTLIDSVILGRVISLVKNHLDLEKPHLWVVYPRTRQENDALHVQIVGVWEPETLKKEDDQEIETLLASTPGYFSIRGEVIFTERENQAVVVKIRQMPKTEADKPKFFKLKLRGTLPSKPVSRFWDFQVQLKGDALTILEGLDLGFASKKKPMGKGGFKKPFDKNRRPSADRYSGPEGEGEKRPFTPGQFPVPRPSRPKPLSEN
>NZ_CP011304.1|WP_046661304.1|1124190_1124991_-|tetratricopeptide-repeat-protein
MKASLSNRRWLSIGLILMLFALLSFSTMPLLTSILKSQHSSGQSHLSAVKQEELASQALGYQMVLEREPDNQTALRGLLDTRLQQGDLKQAIEPLEKLAQLNPQQSDYLLLLAEAKQQIEDYAGATASYRSLLASQPQDLRALTGLTNLFLRQNRSIEAISLVKDTIDRALKAAADPNNPASLIDIVSVQLLLGKIYFEQQNYPEALNAYKQAQQMDVNDFRPILAAAIVLKEQGKNQEAQPLFQEALSLAPFAYREEIQSLISNQ
>NZ_CP011304.1|WP_046661303.1|1123321_1123741_+|YraN-family-protein
MTTVGELGENLVADWLQLQQWHILQRRWRSGGGEIDLIVLSKSQAILAFVEVKTRSAGNWDLGGKLAIDDRKQGKIYEAAQIFLSFYPQWSDLTCRFDVALVSCQKSSLLALPEFSLDYPCQRQAGYQLQLQEYLVAVF
>NZ_CP011304.1|WP_004268065.1|1122473_1122851_+|DUF3110-domain-containing-protein
MRVFVLLFNAGTENEGIHTIQMGAINKVLMFESEDDATRYALLLEAQDFPTPTVEKIDSEEVAEFCRDAGYQAEMIEAGMLVIPPESNASELDWRKEEVPPAEEEFSEIPDAELDSIRRRLEGLL
>NZ_CP011304.1|WP_046661302.1|1121932_1122394_+|DUF2996-domain-containing-protein
MAEETTTPATPAAEAEKPAQPAAAKKPKEPTVEEKPFAEFIEQHFQPALAAALQKLGIADMKLSFKQDKIAVQGFSSSPCWQLSGNWLGGMRQFSIYFLEENINGKKAFSQAEGGAQPSTLESFMIDERKVSLDLLLFYTLQRLNGQKWLTRN
>NZ_CP011304.1|WP_046661311.1|1133745_1133934_+|hypothetical-protein
MLIRLNKLSDQMIKFWSLTSKEELGTLDRPTDKLLSLVISDDEKYLISGSADKTVKIWQNGQ
>NZ_CP011304.1|WP_002780413.1|1134098_1135082_+|DNA-polymerase-III-subunit-delta
MPTIFYWGEDEFAINQAVKNLQAKLLDPNWIQFNYDKINGDRNEAIIEALNQAMTPVFGMGNRLVWLADTVICQQCSEDIFKELQRTLPNLPENSYLLLTSAKKPDSRLKSSKFIQNQAEVKEFELIPPWKVEEIAQRVREIAKEVGVKLTPDAIELLAESVGNNSRLLWMELEKLRLFKNNSAGTIDKKDILSLVNASNQSSLQLASAILKRETGKALELVNELLNRNENPLAITATLGGQFRTWAIVKLKIEEGEKDEKNIAAAAEIANPKRLYFIRKEIQSFSSKQLLATLPILLDLEYRLKRGAEPLATLQTKIIELCCLLVT
>NZ_CP011304.1|WP_046661313.1|1136977_1138135_-|magnesium/cobalt-transporter-CorA
MTQLQPDIFVNNRPDTDGDEEEDYFDYFYDEPGSEPGTLIIEPDAKPSRIILIDYDEDNAIRKVDITPNACAPYIGTNTVSWMDIQGLGSETVLKQVGEIFNLHPLLLEDVVNVPQRPKLEDYNNQLLVISQMVRLKEDESGFDTEQVSFVLGKRYLLSFQEEELQDCFEIVRDRIRTSQGRVRKSGADYLTYLLLDTIIDGYFPVVEHYEDRIEALEDAIISNPDRDTMQEIYDVRRELLALRRLIWPMRNVLHLLMRDHHGIVSDEVQIYFRDSYDHVIQILEIIEAYRELAASLMDVYMSTMGNKLNEIMKFLTVISTIFIPLTFIVGVYGMNFENMPELKGEWSYFMVWLVMLAVAGGLIFYFWRKGWFKPIYSLKEEAKS
>NZ_CP011304.1|WP_046661314.1|1138326_1139355_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MESASFIPRLVIPVGDPAGIGPEVVLKAIADSPISCSCQITLIGTRTLLEKAYHDPYLLDRFSLIDLPYHQEKIVFGRGDAHSGEISFFYLQEAIKRTLKGEFDGIVTGPIAKSCWQLAGYDFPGQTEVLATMAGINRYGMLFVAKSPHTGYNLRTLLATTHIPLREVPDTLNPDLMTRKLDLLIESLKLDFGIDRPKIAISGLNPHSGEAGKLGREEKDWLQPWLQSMGQKYPQTQLIGLVPPDTLWVEPGRAWFRGAGQPADAYLALYHDQGLIPVKLMAFDCAVNTTIGLPFVRTSPDHGTAFDIAGLGIARPQSMQAAIQLAIELCQQRDNRRTKLEI
>NZ_CP011304.1|WP_046661315.1|1139379_1140744_+|NAD-dependent-succinate-semialdehyde-dehydrogenase
MGIASVNPATGEILKTFTPLTSEELAAKLALAETTFQQYRQIPISQRGQWLRQAADILERDQVLLAKTMTLEMGKPIKSAIAEVLKCALVCRFYADNAGGYLEDVLITTDASRSFVRYQPLGVILAVMPWNFPLWQVFRFAAPALMAGNVGLLKHASNVPQSALAVERILLEAGFPEGTFQTLLIGADRVSDLINDERVKAATLTGSEPAGMSLAAAAGKQIKKVVLELGGSDPFIVLDSADIEAAAATAVTARLLNNGQTCIAAKRFIVMETVADQFEQLLVAKFQALKVGDPLDETVDIGPLATASIVSEIAAQVEKTVAMGGKVLVGGQRLEGKGNFYLPTILTDIPAGSPGEKEEFFGPVALLFRVKNIEEAIALANDSPFGLGSSAWTNNPAEIERLITEIEAGCVFINGMVKSDPRLPFGGIKRSGFGRELSVEGIREFVNVKTVWIK
>NZ_CP011304.1|WP_046661316.1|1140852_1144182_+|helicase
MPRIIDNIESHLLPILRESLLASQRADFCVGYFNLRGWQSIDTYIDHFLGGDLSCCRLLIGMQQAPQELLQQSLSLLKRSNDIDKATCARLRKQIVQDFCQQLTWGNPSNRDQAALQRLGKQIQSGKLVIRLFLGYNLHAKLYLIHRQDVNNPTVGFLGSSNLTFAGLQQQGELNIDVLDHDACAKLQKWFNDRWLDAWCWDISSDIVKVINESWARESLIPPYHIYLKIAYHLSFEARAGLAEYKIPRQFDQDLLDFQKSAIKIAARYVQRRGGVLIGDVVGLGKTRIASILAYILQEDYDLEILIICPKNLLTMWEDYSYKYKLRAKIIPLSQVIQELPNLRRYRVVIIDESHNLRNREGKRYRVIQEYINTNESRCILLTATPYNKNYLDLSNQLRLFIQEDTNLGIRPERLLESLGGEIEFNRRYQSPVRSLAAFEKSDSPDDWRDLMRLYMIRRTRGFIENNYATEDEQGRRYLKFADGSRVYLPQRQLKTIKFDLQDSVYARLYSEAVVITLNGLKLPRYGLGNYLIKGCQGTGEEETILKSLSRAGKGLMGFCRTNLFKRLESGGYAFLQSLDRHILRNYIFLHAMANNLPLPIGSQDPALLDTRYLDEDLVTQGEDESIETEETGGITGLEKEYQKRAEQVYQKYSGDYRKRFQWINPEVFKPALKKDLKSDALALIALLQTCGTWQPETDEKLEKLWQLLEENHPREKVLIFSQFADTVSYLVTQLQNRGVDKIAGVTGNSANPAEMVHRFSPRSNSQQVGEEIRVLVATDILSEGLNLQDCAIIVNYDLPWAIIRLIQRAGRVDRIGQKASQILCYSFLPAEGVERIIKLRTRLSQRLRENADVVGTDEVFFEEEMDNQTLLDLYHEKSEVIDEEEDQEVDLTSEAYQIWKNAIEVDPSLKHTIETLPPVVYSTRCHSGTATHPEGVMVYLKTAGGNDALAWIDKQGNSVTQSQLTILRSAACHPQTPAIPPHPQHHQLVQKGTELIAEEENNSGSKLGRLTGAKFKTYERLKRYSQDSKDDLFAHEDLCKALDQLYHYPLRQSALDRLNRGLRTGISDRQLADLLVSLYKDDRLCIVHPQESTQEPQIICSLGLFQPS
>NZ_CP011304.1|WP_046661317.1|1144907_1148324_+|transcriptional-regulator
MPLNFSRTRDLLSNFQFGELFIEELGWSHPRAKKTVSITVDNQEYPCQRIAEVSGVAVLEVTTTDIPDAKLRRDIHQQVIERIAENLLIFVDGGRTRSLWYWVKREGSKSYIRDHLYIKGQPGDLFLGKLAELVLDITDFEDGEPSVVEVAHRLQKGFDIEKITKKFYQEFQREHLQFLPFIQGIDRESDRKWYTSVILNRLMFVYFLQRKGFIDNDFNYLQNQLQASQRRGKNLFYRQFLQTLFFQAFAQPESQRDETVTALVGKVKYLNGGLFLQHPLENLYQNIYIDDQAFENILDLFSRYSWNLDDTPGGSDDEINPDVLGYIFEKYINQKAFGAYYTRPEITEYLCDRTINKWIVERSNQHYPRKQFASISELLINLDSPLCQLLIEDILPQLSILDPACGSGAFLVAAMKTLIGIYSAVIGTIELRGDSKLKQWLTEVRKSHPSLGYYIKKRIISDNLYGVDIMEEATEIAKLRLFLALVAAAQSVTELEPLPNIDFNIMSGNSLIGLIRVDEKSFNLMGEENILQTLTAQNYQAILAEKNRSIELYKEHAFRLGEVEGTPQENRLQMLRNHIEDVNRESVQKLNQILLDEFSGKLSIKYESAQLTGKAKKRLLTLSDMQSLKPFHWGYHFDKLITEKGGFDVIITNPPWEVFKPQAKEFFSQHSDLVTKNKMDIKTFEKEQKKLLTNPEIAQAWLEYQSQYPHVSLYFRSSEQYKNQISLVNGKKQGTDINLYKLFVEQCFNLLHPQGECGIVVPSGIYTDLGTKQLREMLFSQTNVTGLFCFENRKTIFEGVDSRFKFVILTFEKNKQTLSFPVEFMRHDVEELQRFPHKDSLVISVDLIRKLSPDSLSVMEFKQDIDIHIAEKMSRFPLLGETLPDTWNLKLTREFDMTNDSHLFKTEPAKGRLPLYEGKMIHQFTHRYALPKYWLDEKEARQALLKRGEVDKGQILDYQTYRLGFRDVARNTDIRTMIATILPPNSFCGNTISLEKNEKQVAISLKEKCYLLSIFNSFVFDRSIRDKVTSHLSFFYVYQNPIPRLKEGDKYFQEIVENAAKLICTTEEFEQLAKEVGIGSHKNGVTEEAERMAIRAKLDAIIAHLYELTLTEFQHILTTFPLVPESVKTATLKAYQTL
>NZ_CP011304.1|WP_046661318.1|1148549_1149362_+|5'/3'-nucleotidase-SurE
MTSDRSLKLLISNDDGISALGVRTLANTLAAAGHQVTVVCPDGERSATGHGLTLHHPIRAEQVEGIFHPEVIAWSCSGTPADSVKFALSAVLKERPDLVLAGINHGSNLGTDILYSGTVSAAMEGLIEGIPSIAVSLASFKACDFQPAADFALTLVRKVTLNPFPVPTLLNVNVPPVSSGEIKGVKITRQGLRRYEETFEKRLDPRGKSYYWLIGEVVEDIEQPDYSHLPPEVPTDVRAIGENFITITPLQYNLTDVQGFQHLHRNSWLD
>NZ_CP011304.1|WP_046661319.1|1149409_1149991_+|DUF3727-domain-containing-protein
MSPQFNFQENELEEADVITLWDEQGRSLDCYIENAYETDDLTYMLLVPVDTPVMILAWDEESEEEESDAFLIEDSEEIERVFADAKAVLAELDLLLKPTAHTLTVSGELPPLEEDNVLSLEIDSDAPSSSSEPEELQFLASFFSEDQKYSIYSPLAPLLFLAVGDAEGKVELVSPDDDGMGPILEELLFDELD
>NZ_CP011304.1|WP_046661320.1|1150237_1151068_-|metal-ABC-transporter-permease
MLEALQFDFMRHAIAAGILVSIACGIVGTLVVVNRVVFISGGIAHAAYGGIGIGYFFGINPLVGAIFFTFFSALGMGFLQRRIRERADTLIGVMWAIGMAIGVIFIDLTPGYKADLMSYLFGSILTVPRDDLWIMAGIDILIITLVSIFYKELLAISFDETFAIIRNIPVEIIYLGLMGITALTIVAVMQVVGLIMVIALLTIPAAISGQFVKNMKAMMLLAIILGIVFTLVGLWLSYSLNLTSGATIILVAGLGYLISLAWKPFILTITRKIANL

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Crispr_ID: NZ_CP011304_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011304_8

1232112-1232527

Orphan

Consensus_repeat	Method
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG	PILER-CR
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG	CRISPRCasFinder
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG	CRT

5 spacers

The CRISPR arrays of NZ_CP011304_8

>merge|NZ_CP011304|8|1232112-1232527|PILER-CR,CRISPRCasFinder,CRT
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGGAGTAAGAGTAGGGCTAATTCATGAATTAGCCCTACTTTTTTAGTTTCCAACTAATCCTATTTGACCTAATAGGTAAGGTTCACTGGCTCACCACCATGCCAAGGATTCTCAATAGTGTTTCCAACTAATCCTATTTGACCTAATAGGTAAGGTCCTTGCCATTATTAGCCCTGCTCGGGCCCAAGAACTCAAGTTTCCAACTAATCCTATTTGACCTAATAGGTAAGGCAGAGCCGTAAAATCGACGGGCAGAAAATGAATTCTACTGTTTCCAACTAATCCGATTTGACCTAATAGGTAAGGTTAGTCTGATTTTTTAATCAGTGTAGAAAAGCCCCCCTCAAGTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG

>NZ_CP011304|8|1|1232112-1232527|PILER-CR
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG	AGTAAGAGTAGGGCTAATTCATGAATTAGCCCTACTTTTTTA
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG	TTCACTGGCTCACCACCATGCCAAGGATTCTCAATAGT
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG	TCCTTGCCATTATTAGCCCTGCTCGGGCCCAAGAACTCAA
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG	CAGAGCCGTAAAATCGACGGGCAGAAAATGAATTCTACT
GTTTCCAACTAATCCGATTTGACCTAATAGGTAAGG	TTAGTCTGATTTTTTAATCAGTGTAGAAAAGCCCCCCTCAA
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG

>NZ_CP011304|8|8|1232112-1232527|CRISPRCasFinder
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG	AGTAAGAGTAGGGCTAATTCATGAATTAGCCCTACTTTTTTA
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG	TTCACTGGCTCACCACCATGCCAAGGATTCTCAATAGT
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG	TCCTTGCCATTATTAGCCCTGCTCGGGCCCAAGAACTCAA
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG	CAGAGCCGTAAAATCGACGGGCAGAAAATGAATTCTACT
GTTTCCAACTAATCCGATTTGACCTAATAGGTAAGG	TTAGTCTGATTTTTTAATCAGTGTAGAAAAGCCCCCCTCAA
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG

>NZ_CP011304|8|1|1232112-1232527|CRT
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG	AGTAAGAGTAGGGCTAATTCATGAATTAGCCCTACTTTTTTA
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG	TTCACTGGCTCACCACCATGCCAAGGATTCTCAATAGT
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG	TCCTTGCCATTATTAGCCCTGCTCGGGCCCAAGAACTCAA
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG	CAGAGCCGTAAAATCGACGGGCAGAAAATGAATTCTACT
GTTTCCAACTAATCCGATTTGACCTAATAGGTAAGG	TTAGTCTGATTTTTTAATCAGTGTAGAAAAGCCCCCCTCAA
GTTTCCAACTAATCCTATTTGACCTAATAGGTAAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011304.1\|WP_046661387.1\|1242039_1243230_+\|trypsin-like-serine-protease	unknown	unknown	gnl\|CDD\|273938
NZ_CP011304.1\|WP_046661379.1\|1230401_1231352_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133005
NZ_CP011304.1\|WP_046661374.1\|1226306_1226819_+\|dihem-cytochrome-c-family-protein	unknown	unknown	gnl\|CDD\|378226
NZ_CP011304.1\|WP_046661373.1\|1225003_1226221_+\|ATP-phosphoribosyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|237043
NZ_CP011304.1\|WP_046661378.1\|1229508_1230174_+\|urease-accessory-protein-UreF	unknown	unknown	gnl\|CDD\|223900
NZ_CP011304.1\|WP_046661375.1\|1227161_1228025_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224343
NZ_CP011304.1\|WP_046663617.1\|1236664_1237357_+\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP011304.1\|WP_002737690.1\|1235840_1236137_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|368240
NZ_CP011304.1\|WP_046661380.1\|1231357_1231948_+\|colanic-acid-biosynthesis-acetyltransferase-WcaF	unknown	unknown	gnl\|CDD\|236703
NZ_CP011304.1\|WP_046661385.1\|1238574_1239495_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046661384.1\|1237744_1238488_+\|anti-sigma-factor	unknown	unknown	gnl\|CDD\|315619
NZ_CP011304.1\|WP_002776995.1\|1240538_1241876_-\|Mur-ligase-family-protein	unknown	unknown	gnl\|CDD\|223840
NZ_CP011304.1\|WP_046661377.1\|1228762_1229374_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046661372.1\|1224026_1224965_+\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|197617
NZ_CP011304.1\|WP_046661376.1\|1228257_1228761_+\|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein	unknown	unknown	gnl\|CDD\|238451
NZ_CP011304.1\|WP_046661371.1\|1223152_1223983_+\|inositol-monophosphatase	unknown	unknown	gnl\|CDD\|238817
NZ_CP011304.1\|WP_002737442.1\|1236121_1236310_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046661386.1\|1239571_1240375_-\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|225974
NZ_CP011304.1\|WP_046661383.1\|1234129_1235593_+\|DUF697-domain-containing-protein	unknown	unknown	gnl\|CDD\|206646
NZ_CP011304.1\|WP_071846423.1\|1233273_1233498_+\|DDE-transposase-family-protein	unknown	unknown	gnl\|CDD\|379382

Protein	Function_ID	Function_description	E-value
NZ_CP011304.1\|WP_046661387.1\|1242039_1243230_+\|trypsin-like-serine-protease	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	1.88636e-112
NZ_CP011304.1\|WP_046661379.1\|1230401_1231352_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133005	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.	2.23625e-79
NZ_CP011304.1\|WP_046661374.1\|1226306_1226819_+\|dihem-cytochrome-c-family-protein	gnl\|CDD\|378226	pfam09626, DHC, Dihaem cytochrome c. Dihaem cytochrome c (DHC) is a soluble c-type cytochrome that folds into two distinct domains, each binding a single haem group and connected by a small linker region. Despite little sequence similarity, the N-terminal domain (residues 12-75) is a class I type cytochrome c, that binds one of the haems, but the domain surrounding the other haem is structurally unique. DHC binds electrostatically to an oxygen-binding protein, sphaeroides haem protein (SHP), as a component of a conserved electron transfer pathway. DHC acts as the physiological electron donor for SHP during phototrophic growth. In certain species DHC is found upstream of pfam01292.	2.83798e-27
NZ_CP011304.1\|WP_046661373.1\|1225003_1226221_+\|ATP-phosphoribosyltransferase-regulatory-subunit	gnl\|CDD\|237043	PRK12292, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional.	5.61736e-145
NZ_CP011304.1\|WP_046661378.1\|1229508_1230174_+\|urease-accessory-protein-UreF	gnl\|CDD\|223900	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones].	4.31806e-71
NZ_CP011304.1\|WP_046661375.1\|1227161_1228025_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224343	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown].	7.88495e-24
NZ_CP011304.1\|WP_046663617.1\|1236664_1237357_+\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	1.00268e-25
NZ_CP011304.1\|WP_002737690.1\|1235840_1236137_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|368240	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE. ParE is the toxin family of a type II toxin-antitoxin family. It is toxic towards DNA gyrase, but is neutralized by the antitoxin ParD. The family also encompasses RelE/ParE described in.	4.09698e-07
NZ_CP011304.1\|WP_046661380.1\|1231357_1231948_+\|colanic-acid-biosynthesis-acetyltransferase-WcaF	gnl\|CDD\|236703	PRK10502, PRK10502, putative acyl transferase; Provisional.	6.20145e-113
NZ_CP011304.1\|WP_046661384.1\|1237744_1238488_+\|anti-sigma-factor	gnl\|CDD\|315619	pfam12973, Cupin_7, ChrR Cupin-like domain. Members of this family are part of the cupin superfamily. This family includes the transcriptional activator ChrR.	9.4839e-39
NZ_CP011304.1\|WP_002776995.1\|1240538_1241876_-\|Mur-ligase-family-protein	gnl\|CDD\|223840	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].	2.22533e-90
NZ_CP011304.1\|WP_071846423.1\|1233273_1233498_+\|DDE-transposase-family-protein	gnl\|CDD\|379382	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated. This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.	1.1915e-15
NZ_CP011304.1\|WP_046661372.1\|1224026_1224965_+\|DnaJ-domain-containing-protein	gnl\|CDD\|197617	smart00271, DnaJ, DnaJ molecular chaperone homology domain.	4.92987e-10
NZ_CP011304.1\|WP_046661376.1\|1228257_1228761_+\|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein	gnl\|CDD\|238451	cd00886, MogA_MoaB, MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.	3.79351e-63
NZ_CP011304.1\|WP_046661383.1\|1234129_1235593_+\|DUF697-domain-containing-protein	gnl\|CDD\|206646	cd00880, Era_like, E. coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family.	1.07243e-39
NZ_CP011304.1\|WP_046661386.1\|1239571_1240375_-\|type-1-glutamine-amidotransferase	gnl\|CDD\|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	1.6359e-121
NZ_CP011304.1\|WP_046661371.1\|1223152_1223983_+\|inositol-monophosphatase	gnl\|CDD\|238817	cd01639, IMPase, IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be recycled into inositol lipids; in eukaryotes IMPase plays a vital role in intracellular signaling. IMPase is one of the proposed targets of Li+ therapy in manic-depressive illness. This family contains some bacterial members of the inositol monophosphatase family classified as SuhB-like. E. coli SuhB has been suggested to participate in posstranscriptional control of gene expression, and its inositol monophosphatase activity doesn't appear to be sufficient for its cellular function. It has been proposed, that SuhB plays a role in the biosynthesis of phosphatidylinositol in mycobacteria.	4.98823e-112

>NZ_CP011304.1|WP_046661380.1|1231357_1231948_+|colanic-acid-biosynthesis-acetyltransferase-WcaF
MSPEIRTDEEAWLDLRTYDQSWFDRGRSNPIILLWWLVQGILFPLSLHQMDSFRCAVLRLFGAKIGLGVKIRPTVRVTYPWKVAIGDYTWIGDDVVIYSLDNVTIGSHCVISQKCYLCTGSHDPGDRSFGLKTTPILIGNGTWIAADCFLAPGVKIGSNVVIGARSSVFADIPAQKVAWGSPCRPQYDRKMNSYSS
>NZ_CP011304.1|WP_046661379.1|1230401_1231352_+|glycosyltransferase-family-2-protein
MFSQSEKIPVSVLIPAKNEESNLPACLESVARADEVFVVDSQSSDRSIEISTNYGANVVQFYFNGRWPKKKNWSLDNLPFRNEWVLIVDCDERITPELWDEIATVIQDPNYNGYYLNRRVFFLGQWIRYGGKYPDWNLRLFKHKSGRYENLNTEDIPNTGDNEVHEHVILDGKVGYLKNDMLHIDFRDIYHWLERHNRYSNWEARVYYNILTGNDESGTIGANLFGDAVQRKRFLKKIWVKLPFKPLLRFILFYVIRFGFLDGKAGYIYGRLLSQYEYQIGVKLYELRQFGGKLNVNAPANPPIKPSEPQPVEMIK
>NZ_CP011304.1|WP_046661378.1|1229508_1230174_+|urease-accessory-protein-UreF
MLDQKELLCLLQLASPILPVGAYSYSEGLETLVEKGIISNSASLNDWLERSLCQGSIRLETAVLLRVYRCFCQEDFTKLNYWDNWLSATRETAELRQQSWQMGRSLLNLLRELAPVRDNLPEQANYATAFAIGASHWQIGEELAVLGYLHSWASNLINAGLRLIPLGQTLGQSLLIGLQPSLLTATADIISLADENLSSWSWGLSFASMNHETQYSRLFRS
>NZ_CP011304.1|WP_046661377.1|1228762_1229374_-|hypothetical-protein
MSSREQHFLKINLVVLLLVLALIAGVDRAELPSSLLFYPPATPPTPIAGLLTHSFQFLCCLPPIVCLFSYALLSQEASFSNSRHFLLFSGIITGLFAINEIFRIHIILLYFNIPKFLTISVYGLAILIYGLVFWRHIRQTSYQILIIALALLTFAITIDLLQIKNRGFASLSEGIPKLLSAVNLASYFWDVCFQEISAKIKSQ
>NZ_CP011304.1|WP_046661376.1|1228257_1228761_+|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein
MTFIPHPDTAPLHLSCAVVTVSDTRTPETDRSGQIIQELLTRSGHDIGLYLIIPDEPLQIQAILSEISNQNRIKVLILNGGTGIAPRDTTYDALVPLLRITLPGFGELFRYLSYQEIGSRAMASRAIAGVYQNLLVFSLPGSTNAVKLALEKLILPEISHLVKQMNG
>NZ_CP011304.1|WP_046661375.1|1227161_1228025_-|helix-turn-helix-domain-containing-protein
MTGIMSQLSPLQAEQIKEIGTYLRQKREESCLSMDDIAALTMIRVPMLEALETGNWEKLPELIYVKGFIKRYGDALKIDGKALADRLSPSAEQLAQEVTIPKTLPTKVVPIPKAEPAAPKAERVEPEKPAPETSPQPAKSGVFGMYLWLGLLAGIFCGIGYLFLRPPLSNPPAVTPSPSPLVSPAPVVPPAVVASPSPSPPPQVPLSAEVTIEQAAWVRVIADGKKVYEGSLQPGAKQTWTAQKSLNIRSGNAGGVKISLNEKPAQLMGKAGQIGEITLTAPPLSDQ
>NZ_CP011304.1|WP_046661374.1|1226306_1226819_+|dihem-cytochrome-c-family-protein
MPSIGQVKSIFFIILFLLSILGGILLASLLQQPAIAQSPASDIVLNRYQIGQQTYLENCASCHIAIPPSILPSQTWKKILENPDSHYGIRLKPIVGITQRLIWDYLSYSSRPLRETTFVPLLIEQSSYVKVLHPRVNLPTPLGHTTCVTCHPNASRYDYQTLTPIWDDAA
>NZ_CP011304.1|WP_046661373.1|1225003_1226221_+|ATP-phosphoribosyltransferase-regulatory-subunit
MIHQPPAGTRDLLPLEVTQKGWINDRLQSVFQRWGYQRIVTSTIEWLDTLTAGGTIDPSTVIQLHGDSQGLSGLRPELTASIARSAVTRMSGESYPQRLCYRANVFRRPSASYHGRQVEFYQAGVELLFSGGLLADAEILLLLADCFDSLAVPNWQIILGEAGLTRSLLSPFPDPLREQVKRCLALLDYVSLENLPYPNETLRQQARQLFHLRGNPEDVLARVAVLAQEESAQKAVNNLKSLVELLNADRSEPFPLILDLSLIQTFDYYTGIVFKAVSDHQQNLSILGQGGRYDQLLGVFHPQGQSAPGIGFSLNIEELHESLLSGQTLPSQAPPLDWLLIPLGNNAQIATFSKARSLRNADPNLRVAIDLGGRSEAQIRTYARDRMIKNLAWVQEDGSVIEESL
>NZ_CP011304.1|WP_046661372.1|1224026_1224965_+|DnaJ-domain-containing-protein
MTFPISQGLFQYDLIDHFAILGVSIDAEQEEIRERYLKIAYKLHPDTCRTHTPDEKKLANQLLSKLVNPAYEHLGHDLSREEFRLVLGQMGKAMGKDLSKITISSEPARKLAQSSANYELAYQKILQSLAIDQYTALENTYQKIGQLSELNLVYLILTEGRGNKKTSPKVFISQSNTNQSELVRPAFTTAVQTKSKESPLEAYIRRAQASLDQNNPAQALRELRDALRQEPDNGICHALLGLAYLRQNQLSMARVHINRAWKASPQDATVIRCKRELDKAVNSNIEMQDQKEQKDEGERKGGFWSRFGGKKK
>NZ_CP011304.1|WP_046661371.1|1223152_1223983_+|inositol-monophosphatase
MPDTSSQLEKYLDIASEAALAAGTLILDNWGKIEKIEEKGRSGDLVTEIDRRAETEILKIIGRHFPEHGILAEESGKRPGTDSDYLWAIDPLDGTTNYAHGYPVSVVSIGLLIAGKAAVGVIYNPFRKELFRAAQGLGATLNRRPIHVSRTSELEKSLLVTGFAYDRCQTPDNNYAEFCYLTHLTQGVRRSGSAAKDLSDVACGRLDGYWERGINPWDLAAGVILIEEAGGKITAYDESPFLIETGRILATNGQIHTSLSQALQKAASWRVQFESF
>NZ_CP011304.1|WP_071846423.1|1233273_1233498_+|DDE-transposase-family-protein
MPKNLIYYLEKIPDFREPRGCRHRLSVVLLITILAIMSGELGYQAMSRFLERHRRNLSFVTRSAHIPYPLYISD
>NZ_CP011304.1|WP_046661383.1|1234129_1235593_+|DUF697-domain-containing-protein
MTSDPSLDRAWNTEDLEQALRGVGTIQEELNYNQARNSLSKLVERLDLTSIEKIGLEAEIDRLVALLEKLDRSLIQIAAFGLVGRGKSSILNALVGQEIFTTGPLHGVTRTIEGVNWQLSSDDTFPNLARLTLNGQGNAQVQLLDTPGIDEVDGQTREILACQVAQQVDLILFIISGDMTKVEFSALAKLREAGKPMILVFNKIDQYPEVDRLAIYEKIASERVKELLSPDEIVMVAASPLLAETVKGQDGRLKTQRFRGKPQIEALKLKILEILEREGKSLVALNSMLYADEVNEQIVARKMAIRDHGANQLIQKAVMIKASAIALNPVTVLDLFTGAVIDLAMILALSRLYGIDLTRQGAIALLQKIALNMGGISASEFLAVLGLSSLKGLLGLSIPATGGISLLPYTSIALTQAGVAGVSCYAIGQVTKTYLANGATWGPDGPKAVVASILDSLDETSILNRIKRELGSKLGGGGLFSVAKGTA
>NZ_CP011304.1|WP_002737690.1|1235840_1236137_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MADRVNYRLVWSPKAIEDVDAIASYISRDSPSYAAAVVRRILDISYSLENCPLEAKKCAEFSDDTIREKSAYAYRLIYQIQGAVVIIAAIVHSKHFLD
>NZ_CP011304.1|WP_002737442.1|1236121_1236310_-|hypothetical-protein
MNSIRQKVESLLNQLPDDCSIEDIQYHLYVLEKVRQSLNAASLENTIPQEEVEGLLNKWLIE
>NZ_CP011304.1|WP_046663617.1|1236664_1237357_+|Crp/Fnr-family-transcriptional-regulator
MSSSVPSSDFIPLIGQETEIFNWAKSHYRNHTFAKDERVATRPGLLYFVESGAIRILGKAQVNVIDQKSCRQLPMADSEEVFLGFVGAGQPFEIVSQFPFQLQAQAHLDGTELVWLYWEDLEQWPQLRSAVMETFRHQYQRKLFWLSILGQKRSLDRLMGFLVLLLEEYGQPCLEGYYLPYTLTHAQIASAIGTTRVTVTRLIGKLRQQNSIFFKQDNLIGLPSLFLSQN
>NZ_CP011304.1|WP_046661384.1|1237744_1238488_+|anti-sigma-factor
MTAQSLWKPQKVHVNLLSRVSVLPTSLTWFQTNFTGIWFGCFESDHEIQDHPVTMLTRFYPGGFFPLHGHPGGEEILVLEGNFADETGVHPPGTYMLNPEGFIHRPYSEEGCLTFVKLRQHGGKTRQQVRTNIFNGSWQAGIVPEIKVQHLYEQADFSEKVWIERWLPNTQLVNVVETEIKEIFVIEGTWRDELGSYPVGSWLRYPPNCPYSPSSTTGCLIYVKTYPVTDTTARFVVGDDFQHPQAI
>NZ_CP011304.1|WP_046661385.1|1238574_1239495_-|hypothetical-protein
MTGKIIDRQTAGFLVLIIPLAVLIILVFTAWPLILLVFFLTLAVKVWQDYRWSKLSTVINPYFNQLLQDNQGCLTPIDLSAKANLTAKLARQFLDKKAEEFGAQKKAVGDKGMAYYFITASTLGSIFDESDPSLEEIEEKQVPAITASRSPLTNLEQSQEAKSPLIVAEKSENSVPEVAVISSSQPLTNLGKLFEEKEEENTAAISVQETVIQEPEEIINPSLNSSASSLFQSEAEVREESLTTVSETISSMSLADLAKRLGVTPAVLGRNKKNKSEAEFADWSRIRDPDGIAWKFDAKNSLFMAT
>NZ_CP011304.1|WP_046661386.1|1239571_1240375_-|type-1-glutamine-amidotransferase
MQELELKIGWLYPTLMSTYGDRGNVITIQRRCQWRDIPVTIIPLDAQTEADTFYQVDIIVGGGAQDRQQEIVMRDLQGKKAAAMKEQLSAGIPGVFTCGSPQLLGHYYEPAFGQRIEGLGLLDLVSKHPGPNAKRCIGNVVFEITASPLAEEIKAMTGEKPLVIGFENHGGRTYLQTVSPLGKVITGYGNNGEDGYEGAFYHNAIATYAHGPLLPKNPFLADWLIQKALEQKYQKPIFLTKLDDSLALKARFAMFERLELTSVTNKA
>NZ_CP011304.1|WP_002776995.1|1240538_1241876_-|Mur-ligase-family-protein
MQLFDRIRLGIAVAVAKTVTAVVKGLRLGAASVLPGEIARRLHPRLLPLLCGQVRRGVILVVGTNGKTTTSLLLRTILERQGAKVTHNTTGANLINGLITALLADANLFGTLKADYAILEVDENILPLVLKDCRPRAILALNLFRDQLDRYGEVDTISRRWQGAISPLPTDTLVILNADDPTLSHLGQQLPQRVVYFGLSEPELYLEEIPHAVDSIYCPKCGASLDYRGVYLSHLGDFSCPSCGFKKSNPAFHSHDWPQILIGVYNKYNTLAAGLVAQELGIKDREIFETVQGFKAAFGRAEELEIEGKKVRILLSKNPVGMNETIRAVADILQKEKSSTTLLVLNDRIPDGTDVSWIWDVDTEKLTRLGTTLVVTGDRLYDMALRLQYSQDSLAYPVNLIVESDLKKAIQIALNNTKNEETLHILPTYSAMLEVREILTGRKIL
>NZ_CP011304.1|WP_046661387.1|1242039_1243230_+|trypsin-like-serine-protease
MGLLTRLGISLGLLALGGAVGVLGNQYLSRKAPLEVNTPPAIVPASLSLPVIPQNDDNVNFIAQAVQKVGPAVVRIDSAREVADQIPEEFKQPFFRRFFGDQVPIPKEHWERGTGSGFIISTEGLLLTNAHVVDGTTQVKVTLKNGQTYQGKVLGVDNMTDVALVKIEAKNLPTVTFGKAETLTPGEWAIAIGNPLGLDNTVTVGIISALGRTSSEVGVPDKRVRFIQTDAAINPGNSGGPLLNAKGEVIGINTAIRADAQGLGFAIPIETAQKVAGQLSSKGKAEHPYIGIQMVTLTPELRQQLNETKELNFNIDQNEGVIVLRVVENSPAQKAGMQAGDIIETVAGNPVKTASDVQQGVETSAIGGNLEIEINRRGKQQTLTVQPGVFPSKTSE

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Crispr_ID: NZ_CP011304_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011304_9

1504223-1504342

Orphan

Consensus_repeat	Method
CTGATTCGGAGCATCTTTCAATTTGACAACGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011304_9

>merge|NZ_CP011304|9|1504223-1504342|CRISPRCasFinder
CTGATTCGGAGCATCTTTCAATTTGACAACGCCTATTGTAGGGCTAATTCATGAATTAGCCCTACACCTAGTAATTTCAGTTCCCATCTGATTAGGAGCATCTTTCAATTTGACAACGCC

>NZ_CP011304|9|9|1504223-1504342|CRISPRCasFinder
CTGATTCGGAGCATCTTTCAATTTGACAACGCC	TATTGTAGGGCTAATTCATGAATTAGCCCTACACCTAGTAATTTCAGTTCCCAT
CTGATTAGGAGCATCTTTCAATTTGACAACGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011304.1\|WP_046661573.1\|1502308_1503991_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046661578.1\|1508721_1509510_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046661582.1\|1513491_1514322_+\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277331
NZ_CP011304.1\|WP_046661568.1\|1496869_1497550_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP011304.1\|WP_046661572.1\|1500120_1502118_-\|magnesium-chelatase-ATPase-subunit-D	unknown	unknown	gnl\|CDD\|274135
NZ_CP011304.1\|WP_046661569.1\|1497696_1498095_-\|DUF1824-family-protein	unknown	unknown	gnl\|CDD\|370157
NZ_CP011304.1\|WP_046661571.1\|1499360_1499864_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046661583.1\|1514572_1516402_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|315987
NZ_CP011304.1\|WP_046661574.1\|1504348_1505632_-\|TldD/PmbA-family-protein	unknown	unknown	gnl\|CDD\|223389
NZ_CP011304.1\|WP_046661567.1\|1496257_1496875_+\|serine-acetyltransferase	unknown	unknown	gnl\|CDD\|223975
NZ_CP011304.1\|WP_046661580.1\|1511798_1512011_-\|DUF2839-domain-containing-protein	unknown	unknown	gnl\|CDD\|371332
NZ_CP011304.1\|WP_046661570.1\|1498459_1499350_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046661577.1\|1508048_1508594_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|374761
NZ_CP011304.1\|WP_046661579.1\|1510567_1511503_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|215029
NZ_CP011304.1\|WP_046661576.1\|1507212_1507746_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|130771
NZ_CP011304.1\|WP_046661566.1\|1495202_1496153_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|274884
NZ_CP011304.1\|WP_002743375.1\|1493788_1494622_-\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	unknown	unknown	gnl\|CDD\|180958
NZ_CP011304.1\|WP_046661581.1\|1512164_1513400_+\|LL-diaminopimelate-aminotransferase	unknown	unknown	gnl\|CDD\|181053
NZ_CP011304.1\|WP_046661575.1\|1505903_1506437_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|130771
NZ_CP011304.1\|WP_071846427.1\|1494924_1495098_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514

Protein	Function_ID	Function_description	E-value
NZ_CP011304.1\|WP_046661580.1\|1511798_1512011_-\|DUF2839-domain-containing-protein	gnl\|CDD\|371332	pfam10999, DUF2839, Protein of unknown function (DUF2839). This bacterial family of unknown function appear to be restricted to Cyanobacteria.	3.29987e-35
NZ_CP011304.1\|WP_046661582.1\|1513491_1514322_+\|metallophosphoesterase	gnl\|CDD\|277331	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	4.49639e-57
NZ_CP011304.1\|WP_046661568.1\|1496869_1497550_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.94277e-118
NZ_CP011304.1\|WP_046661572.1\|1500120_1502118_-\|magnesium-chelatase-ATPase-subunit-D	gnl\|CDD\|274135	TIGR02442, Uncharacterized_protein_Rv2850c/MT2916, cobaltochelatase subunit. Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (pfam06180). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.	0
NZ_CP011304.1\|WP_046661569.1\|1497696_1498095_-\|DUF1824-family-protein	gnl\|CDD\|370157	pfam08854, DUF1824, Domain of unknown function (DUF1824). This uncharacterized family of proteins are principally found in cyanobacteria.	2.84731e-63
NZ_CP011304.1\|WP_046661583.1\|1514572_1516402_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|315987	pfam13424, TPR_12, Tetratricopeptide repeat.	1.25649e-05
NZ_CP011304.1\|WP_046661574.1\|1504348_1505632_-\|TldD/PmbA-family-protein	gnl\|CDD\|223389	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only].	2.36795e-91
NZ_CP011304.1\|WP_046661567.1\|1496257_1496875_+\|serine-acetyltransferase	gnl\|CDD\|223975	COG1045, CysE, Serine acetyltransferase [Amino acid transport and metabolism].	9.82855e-46
NZ_CP011304.1\|WP_046661576.1\|1507212_1507746_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|130771	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	8.06764e-15
NZ_CP011304.1\|WP_046661577.1\|1508048_1508594_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|374761	pfam16734, Pilin_GH, Type IV pilin-like G and H, putative. Pilin_GH is a family from Cyanobacteria. All the proteins are putatively annotated as being general secretion pathway proteins G and H, and are likely to be pilins of the type IV secretory pathway.	1.77852e-14
NZ_CP011304.1\|WP_046661579.1\|1510567_1511503_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|215029	PLN00016, PLN00016, RNA-binding protein; Provisional.	1.39858e-151
NZ_CP011304.1\|WP_046661566.1\|1495202_1496153_-\|glycosyltransferase	gnl\|CDD\|274884	TIGR03965, glycosyltransferase_Rv0696_family, mycofactocin system glycosyltransferase. Members of this protein family are putative glycosyltransferases, members of pfam00535 (glycosyl transferase family 2). Members appear mostly in the Actinobacteria, where they appear to be part of a system for converting a precursor peptide (TIGR03969) into a novel redox carrier designated mycofactocin. A radical SAM enzyme, TIGR03962, is a proposed to be a key maturase for mycofactocin.	1.06578e-36
NZ_CP011304.1\|WP_002743375.1\|1493788_1494622_-\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	gnl\|CDD\|180958	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated.	0
NZ_CP011304.1\|WP_046661581.1\|1512164_1513400_+\|LL-diaminopimelate-aminotransferase	gnl\|CDD\|181053	PRK07590, PRK07590, L,L-diaminopimelate aminotransferase; Validated.	0
NZ_CP011304.1\|WP_046661575.1\|1505903_1506437_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|130771	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	1.23577e-14
NZ_CP011304.1\|WP_071846427.1\|1494924_1495098_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	2.65812e-07

>NZ_CP011304.1|WP_046661573.1|1502308_1503991_+|hypothetical-protein
MITTIIDRLTETNPQIMREWQGRLTPKNISIASVISLVGQLLVYLYYQNLLPVGAGFNRYCTANPPHNNDYDPYSGLKYCIQDLNGQWMIISRLWWLDVFTFLSITGIFALLVVGTYQLIADLSGEECRGTLNFIRLSPQPAKTIFIGKIFGVPILLYLVCLLALPFHLGAGLLAGIPLSLILAFYAVLIASCAFFYHAALSFALATPWLGGFQPWLGSAAVLIFVFYSSIITLSGYGGFRTPFDWLILFNPSFFLPYLVKSTFLPPDAVRYLGISQIFDLRWYGQSLWQSVIMGISLILLNFALCTYGLTRIIQRRFHNPLATLVSKPQSYWMMGCFSAISLGFVFQTLEPSYIFDNFAILSVFVAIFGLLILFALTPPRQTLQDWTRYRHLQGKKSISLGKALIFGEKSPSTLAMAVNLAIAILFILPAIFIAPLHQYKLATAAGFLLAMNMILVYAAIAQLLMLAGTNKRALLAATSIGILIIFPFLCFAVLRVDPSQSPLLWFFTFLPIAATKYATLPSFALAIFGQWLGLTLVGWQINRQLNRLGASATKALMPS
>NZ_CP011304.1|WP_046661572.1|1500120_1502118_-|magnesium-chelatase-ATPase-subunit-D
MPTVTLNFPLTAVVGQEAIKLALLLAAVDPALGGVVIAGRRGTAKSVMARAIHSLLPPIEIIAGNVFNCDPNHPDEWDDRTKEEYSSGEVATEVIRAPFVQIPLGVTEDRLLGSVDVEESVKQGEPVFQPGLLASAHRGILYVDEINLLDDQIANQLLTVLSEGRNQIEREGISFQHPCKPILIATYNPEEGDLRTHLLDRIAIALSADGVLSLDQRVTAVNQAIEYAVSPTAFIAQYAQEIDDLKTEIILAREWLKEVKIKPEQISYLVEEAVRGKVEGHRAEIFAVRVAKAAAALEGRDLVSADDLKRAVELVIVPRSLITPPPPEQEQQPPPPPPPPEPPQDENQQEQEEKEEEKEEEKEPEQPDNLPEEFVFDPEGVLLDPSVLYFAQMAQRQGKSGARNLIFSEDRGRYIKPMLPRGKVKRVAVDATLRAAAPYQKARRLRNPERHVIIEEGDLRSKRLARKAGSLIVFVVDASGSMALNRMQSAKGAVMRLLTEAYENRDQIALIPFRGERADVLLPPTKSITLAKKRLETLPCGGGSPLAHGLTQAVHVGMNARLSGDIGQVVIVAITDGRSNIPLAKSLGEPIPEGEKPDIKAELLDIAAKIRSLGIKLLVIDTEKKFVSTGFAKELALKAGGKYYHLPRATEQAIASMARGAIAGL
>NZ_CP011304.1|WP_046661571.1|1499360_1499864_-|hypothetical-protein
MSFRFDKILMSGVLAALLLVTSCAKAPSQFDQAQQESTARGAAAVVKESTSGGSFNQFFPPSGGGYERVYTQEKKGFAEAKLKQDGKVVAMLAISDISNNPAAANKFQDSQTTIKGFPSVKQGTTATAVLVNNRYQVKVLSREPDFTASDRQAWLAKFDLDGLAKLK
>NZ_CP011304.1|WP_046661570.1|1498459_1499350_-|hypothetical-protein
MSKPIFELVDELPTNNLTVKVLKTLDYVVPGQWDNLVGFKNTIIKVTGETDESMIQQIGDRAVWLFNDKSQGYQRALWLYQTIDSADNALAAASLANAVGGKIPLMGGLIERLTPAPEKAQTIDLTLKLVTELVAFCQINGIPGDSIRDFVASLGDYSGESLMRMAALVCLDGLIPLGGSFIRKVESSLSILRPEELESNSTFASIKELIPGGNTARKLDFIGQSFDSTKGWMSGFVSERSLSQQGLLSKIQGFIDFSADKLVYVGAFLDMTTNYYEHTGIQTLARRLIERAVAEI
>NZ_CP011304.1|WP_046661569.1|1497696_1498095_-|DUF1824-family-protein
MSMEEALKLLKEYGCIQLKIAQSPEEEEALRQAILLVNQGSESINLGICADNNEEGFKALKSYLQALGYPLPNILPEDHPEQRAVYIKYNTQRQASYLDSYTGTYRGVLISCQSENDQLVGTYGHFPLDLFS
>NZ_CP011304.1|WP_046661568.1|1496869_1497550_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MYLLIPAAGMGKRMGSDRNKLLLTLHGKPLLAWTLLAAMESRAIIWIGIMAQPEDFEEIREIITAINALKPVQIIQGGETRQKSVYNGLQALPEGAETVLIHDGARCLATPELFDRCAAALATCQGFIAAVPVKDTIKIVDSKGWIEDTPDRSRLWAAQTPQGFQVKLLKECHEQGRKLAWEVTDDAALLEKCGFPVKIVVGEETNLKITTPGDLAIAEYILSQRL
>NZ_CP011304.1|WP_046661567.1|1496257_1496875_+|serine-acetyltransferase
MKSFFRKLFFYVGILWLSPLIIAFQVANNRELILGDVRRWVELLGWEKRSDWLQLLALCLEAKEFRNLYYCRLFQGGSFSRFLMYILRFFYRESSYLFLDSSCSIGKGLFIQHGFSTIVMADLGDNCWINQQVTIGYKDKSGRPKIGNNVRITAGAKVLGNITIGDNVTVGANSVVVKDVPPNCVVVGIPARIIKRDGVKVDEKL
>NZ_CP011304.1|WP_046661566.1|1495202_1496153_-|glycosyltransferase
MSNTLQFLPEVSVIVPIYNGEKDIPSLIDCLAKQTYPRQLVEYILVDNNSGDRTGELLGKAAEEHRGLNLIILSENHIQSSYAARNKGIKSARYPFLAFTDADCRPAAQWLTELVQPFKYTRIGLVAGEIAALTGSTWLEKYAERRHFMSPKFLLEHSFCPYGQTANLAIRREAFEKVGLFRPYLTTGGDADICWRIQQQTDWQLTYAPEAIIYHRHRSTLEDLRSQLKRYGRSNRYLHELYGVELMRPLTNQELFFTLGRWLLKELPKNTLKLLFGKADIVDLLATPLDLIGFQSRSQGQTTAKLPEKAKEIEWL
>NZ_CP011304.1|WP_071846427.1|1494924_1495098_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MSTSNKTKPESLEFYLGLKYPITIYPDDEGGYVSEIKDITRCFTQGETIEETLISKQ
>NZ_CP011304.1|WP_002743375.1|1493788_1494622_-|1,4-dihydroxy-2-naphthoyl-CoA-synthase
MSVEWQSVKTYEDILYHKWGGIAKITINRPHKRNAFRPKTVFELYDAFCDAREDARIGVVLLTGAGPHSDGKYAFCSGGDQTVRGQAGYIGDDGVPRLNVLDLQKLIRSIPKVVIALVAGYAVGGGHVLHLVCDLTLAADNAIFGQTGPKVGSFDGGFGSSYLARVVGQKKAREIWFLCRQYNAQQALEMGLVNHVVPVEELEQEGVKWSLEILEKSPLAIRCLKSAFNADCDGQAGLQELAGNATLLYYMTAEGAEGKQAFLEKRPPDFSQYPWLP
>NZ_CP011304.1|WP_046661574.1|1504348_1505632_-|TldD/PmbA-family-protein
MTIDPQQLIELALKSGAVAAEVYQSSSLSHPVFFEANRLKQLESSESVGTALRLWREGCPGLAVGYGDVEPEILVETALNLSYLNAPEEIEFSAPRRAVYDPIGQDVAVESLIAMGNQMIGHIRQVYPEVICSGEWECEREITRLVNSEGLYCQYTDTALSYYLGIEWVRGEDFLAVYDGEYTRSTPHPETVIKQLLQRLQWAANNVDSPTGKLPILLTSNAVTLLWGTVEMALNGKQILEQSSPWSDKIGQLVMSEKLTLSQQPDREPYSCPFDDEGTPTKFLSLIEGGRVKEFYSDRTTARLLKTTPTGNGFRPGLGVYPMPDLVNLIVAPGEGTLEDLISQIDEGLVIDQILGHGADISGDFSVNIDLGYRIEKGKITGRVKDTMVTGNVYTALQNLIALGADNQWNGSCYTPSLIVDSLSVVR
>NZ_CP011304.1|WP_046661575.1|1505903_1506437_+|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MNSAFKFKLIQALNKKNGNKGFTLIELLVVVIIIGVLAAIALPNLLGQVAKGRQAEARTNLGVVNRAQQVYRLENTTFGTVSQLPVQFTLTYYTSVSNVSNDANGAEAHMAPAANYVNDILEYGSAVSQTTAGVFTAVICEQATPATSTALTAGVLTTAGTASTDAACDATTARPVQ
>NZ_CP011304.1|WP_046661576.1|1507212_1507746_+|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MNSAFKFKLIQALNKKNGNKGFTLIELLVVVIIIGVLAAIALPNLLGQVAKGRQAEARTNLGVVNRAQQVYRLENTTFGTVSQLPVQFTLTYYTSVSNVSNDANGAEAHMAPAANYVNDILEYGSAVSQTTAGVFTAVICEQATPATSAALTAGVLTTAGTASTDAACDATTARRVN
>NZ_CP011304.1|WP_046661577.1|1508048_1508594_+|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MKYLLFLAIKSQGKKATGFTLVELLVVVIVLGVLTAVGLPNLLQQVAKGRQAEAQAILGQINRAQVAYRLENPTFANLTQLPISGINNARYYSFSDYDVVPTNATRSSYRAQALDPFRNDIKNYAGGVRLINGRFFTLICEAITPLQDSVFVDGSGACSSDSIGFNNDSQGTNQPSQGGPM
>NZ_CP011304.1|WP_046661578.1|1508721_1509510_+|hypothetical-protein
MLGAKKSLNLSLLKTLGLVAVIGGLIMAIVEMQQEKVKTLTKEKLLERNYSQESRLENAQVELLKNMPAFGFDNMLANWSMLQFIQYYGDGDARRETGYGLSPDFMEIVTKNDPKFVRAYLMMSVPSSLNAGKPERTVEIMNKGLSKLTPDVTDAYFIWLYKGVDELLFLGDIPAAKKSHQMAADWAKIAGNKFIEKSARGTVKFLETNPDSRAPRVGAWMLVWLNSQNEETRKLARENIEKLGGKLLVFGDNQVMAIPPKD
>NZ_CP011304.1|WP_046661579.1|1510567_1511503_+|NAD-dependent-epimerase/dehydratase-family-protein
MKILIMGGTRFIGVSLTKVLVEQGHEVVLFNRGNKPAPVAGVRQIHGDRTDPLQLKEKLKNESFEAIFDNNGRELSDTQPLVEIFRDRIGHFVYVSSAGVYLKSDQMPHKEGDKLDPKSRHKGKHETENYLSEMGLPWTSIRPVYIYGPGNYNDLEAWFFDRLVRNRPIPIPGHGEHFTQFGHVVDLAKAMAAVLGNSQAIGQVYNISGDRYVTFNGLAKACAAAMGKNAEEIEIVNYNPKKFDFGKKKPFPLRVQHFYADINKATRELNWQPEYDLVSGLTDSFQNDYLASGRDRQEIDLAIDDQILANQ
>NZ_CP011304.1|WP_046661580.1|1511798_1512011_-|DUF2839-domain-containing-protein
MGESKRRQSALGDKYGQEENILPWLPITKSQASQAYKLTTRGAWIGIGVLAGVWLVIRFVGPAFGWWNVQ
>NZ_CP011304.1|WP_046661581.1|1512164_1513400_+|LL-diaminopimelate-aminotransferase
MATINSNYLKLKAGYLFPEIARRVQAFAAANPDANIIRLGIGDVTEPLPLACREAMIKAVEEMGDRSSFKGYGPEQGYAWLREKIAVHDFQARGCEISADEIFISDGSKCDTGNILDIFGDNNSIAVTDPVYPVYVDTNVMAGHTGEVNDRGEYEGLIYLPITAENNFTAQIPAEKVDLIYLCFPNNPTGATATKEHLTAWVNYARANGSIIFFDAAYEAFITDASLPHSIYEIEGARQCAIEFRSFSKNAGFTGTRCALTVVPQSLMAKAADGTDVQLWKLWNRRQSTKFNGVSYIVQRGAEAVYSPEGQAQVEELVKFYLQNATIIREKLTAAGLEVHGGVNAPYVWVKTPQGLSSWDFFDKLLHTCNVVGTPGSGFGAAGEGYFRLSAFNSRANVEAAMERIIDKFQG
>NZ_CP011304.1|WP_046661582.1|1513491_1514322_+|metallophosphoesterase
MRPFWLESLQVERLTIAIASLPAALQGIKLVQWSDLHCDEQHLPVAVLQEAIAITNQEKPDLIFLTGDFITYSPRPIFALVESIKALKSQGGIYACLGNHDSYLPNARETVRSALTSVGIRVLWNEIVTPYGENFPIVGLADYWSGEFLPQILEQISPDIPRLVLSHNPDTAMILKDWRVDLQLSGHTHGGQVTIPGMGSLPIVLEELRRSLPEPYRPWVPFHRQFSRVVRYWQWSEGFHRVGENQLYVNRGLGTYFPGRLFCPPEVTVITLINGS
>NZ_CP011304.1|WP_046661583.1|1514572_1516402_+|tetratricopeptide-repeat-protein
MTENRDNFNETYKALIERIVNLTLEGKIRAKSQVYNLLSEGVKNGTGEIFERCLTEKIIFTRSQLETKIKATRVLRALETIESEWEKYQKTNQQNSLTAAAINNLVKIDREDRLLTLVNLIDPNQNNALTLEQLQQLAKHLQTVAQQRGEADLWQIATGINLGLNTWLNLSNDLTSWLYEQNRNLGFTNDNERVTPWQIWASKVNPSWLKRVLESLANQQAFDSLTQDLTLADWVETAIVFQYIQRGLINFFDQRIYSEKLGAKLSISTFLTFALIWSLLTNSFEQVSKNSLYSRGCFQMALQILRTFAQRDYFPLYGGIFASFSGSYLKEALDYLSIPLRYVEGTGEKARILTLIAYSNRIRGDYPQARECHQQALEIARQQQDSACEIANLNHLSRLNAIQKNYTEAINLSQRALILSRQQGNSLGQANALANLGYSQVQEAQQLERYDPEIFPSSIEYLQQGLKLAESLQDWQSKSLCCSSLGLAYIILERPQDAINILLQGLESAKYYGDLYLQGLLLTYLGEAYYQDKNFEQAIYMGSLGMYWLHEIGAAEWRQAASLLTVIRGKNIAAFEQTFSHERSSLIKSIGLEGYQYISEILSKYQQGN

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Crispr_ID: NZ_CP011304_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011304_10

1800332-1800431

Orphan

Consensus_repeat	Method
TTATGAGAGAATTGTTAATCAAGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011304_10

>merge|NZ_CP011304|10|1800332-1800431|CRISPRCasFinder
TTATGAGAGAATTGTTAATCAAGGGAAGGCGGATATTGAGCAAGCGGAGTTACGATTAATCGAACAAAAGAGGATTTATCAGAGAATTGTTAATCAAGGG

>NZ_CP011304|10|10|1800332-1800431|CRISPRCasFinder
TTATGAGAGAATTGTTAATCAAGGG	AAGGCGGATATTGAGCAAGCGGAGTTACGATTAATCGAACAAAAGAGGAT
TTATCAGAGAATTGTTAATCAAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011304.1\|WP_002797385.1\|1790782_1791484_+\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
NZ_CP011304.1\|WP_004160464.1\|1792850_1793060_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046661804.1\|1796110_1796305_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046661809.1\|1804535_1805705_-\|aminoglycoside-phosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|366736
NZ_CP011304.1\|WP_002737941.1\|1802963_1803254_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046663662.1\|1796648_1799363_+\|peptidase-domain-containing-ABC-transporter	unknown	unknown	gnl\|CDD\|225183
NZ_CP011304.1\|WP_046663665.1\|1809121_1810405_-\|protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP011304.1\|WP_002738203.1\|1802641_1803004_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046661807.1\|1802011_1802197_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046661801.1\|1791494_1792829_+\|ATP-dependent-protease-ATP-binding-subunit-ClpX	unknown	unknown	gnl\|CDD\|235422
NZ_CP011304.1\|WP_046661812.1\|1808544_1809078_+\|DNA-starvation/stationary-phase-protection-protein-Dps	unknown	unknown	gnl\|CDD\|236521
NZ_CP011304.1\|WP_046661798.1\|1789093_1790491_+\|trigger-factor	unknown	unknown	gnl\|CDD\|234956
NZ_CP011304.1\|WP_071846438.1\|1795074_1795851_-\|IS5/IS1182-family-transposase	unknown	unknown	gnl\|CDD\|372577
NZ_CP011304.1\|WP_046661796.1\|1787731_1788769_-\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845
NZ_CP011304.1\|WP_046661802.1\|1793037_1793895_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP011304.1\|WP_046661806.1\|1801170_1801908_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|275293
NZ_CP011304.1\|WP_103672700.1\|1793910_1794135_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223831
NZ_CP011304.1\|WP_046661811.1\|1807599_1808331_+\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|223750
NZ_CP011304.1\|WP_046661810.1\|1806376_1807327_-\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|234712
NZ_CP011304.1\|WP_046661808.1\|1803407_1804511_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375425

Protein	Function_ID	Function_description	E-value
NZ_CP011304.1\|WP_002797385.1\|1790782_1791484_+\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	5.87965e-140
NZ_CP011304.1\|WP_046663665.1\|1809121_1810405_-\|protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.42806e-17
NZ_CP011304.1\|WP_046663662.1\|1796648_1799363_+\|peptidase-domain-containing-ABC-transporter	gnl\|CDD\|225183	COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms].	0
NZ_CP011304.1\|WP_046661809.1\|1804535_1805705_-\|aminoglycoside-phosphotransferase-family-protein	gnl\|CDD\|366736	pfam01636, APH, Phosphotransferase enzyme family. This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. This family also includes homoserine kinase. This family is related to fructosamine kinase pfam03881.	5.68446e-09
NZ_CP011304.1\|WP_046661801.1\|1791494_1792829_+\|ATP-dependent-protease-ATP-binding-subunit-ClpX	gnl\|CDD\|235422	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX.	0
NZ_CP011304.1\|WP_046661812.1\|1808544_1809078_+\|DNA-starvation/stationary-phase-protection-protein-Dps	gnl\|CDD\|236521	PRK09448, PRK09448, DNA starvation/stationary phase protection protein Dps; Provisional.	9.3039e-90
NZ_CP011304.1\|WP_046661798.1\|1789093_1790491_+\|trigger-factor	gnl\|CDD\|234956	PRK01490, tig, trigger factor; Provisional.	3.6234e-117
NZ_CP011304.1\|WP_071846438.1\|1795074_1795851_-\|IS5/IS1182-family-transposase	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.25487e-33
NZ_CP011304.1\|WP_046661796.1\|1787731_1788769_-\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	0
NZ_CP011304.1\|WP_046661802.1\|1793037_1793895_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.26451e-37
NZ_CP011304.1\|WP_046661806.1\|1801170_1801908_+\|peptidylprolyl-isomerase	gnl\|CDD\|275293	TIGR04500, PpiC_rel_mature, putative peptide maturation system protein. Members of this protein family have a novel N-terminal sequence region. Close homologs to the C-terminal region of this protein score well to PpiC-type peptidyl-prolyl cis-trans isomerase models (see pfam00639), yet no sequence within the family scores well to such models, suggesting origin within a branch of the PpiC family but subsequent neofunctionalization with a rapid change of sequence. The genome context for members always includes an ATP-grasp enzyme associated with peptide modification and a short polypeptide likely to be the modification target.	7.06007e-13
NZ_CP011304.1\|WP_103672700.1\|1793910_1794135_+\|peptidylprolyl-isomerase	gnl\|CDD\|223831	COG0760, SurA, Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones].	3.94717e-05
NZ_CP011304.1\|WP_046661811.1\|1807599_1808331_+\|glutathione-peroxidase	gnl\|CDD\|223750	COG0678, AHP1, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	9.89812e-93
NZ_CP011304.1\|WP_046661810.1\|1806376_1807327_-\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|234712	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase.	1.03321e-93
NZ_CP011304.1\|WP_046661808.1\|1803407_1804511_-\|hypothetical-protein	gnl\|CDD\|375425	pfam17914, HopA1, HopA1 effector protein family. This family includes the HopA1 effector protein from Pseudomonas syringae. Structurally this protein has an alpha + beta fold. The effector protein HopA1 was shown to affect the EDS1 complex by binding EDS1 directly and activating the immune response signaling pathway.	9.51935e-75

>NZ_CP011304.1|WP_046663662.1|1796648_1799363_+|peptidase-domain-containing-ABC-transporter
MTTKEYLSGLIGQFLSEEDLASLVESAEFSKPNPGLLLESISASDGLYILVAGKVRLVNSSLDLISTLHPAQLFGECTLFPEAGFLDYAVRVSPQAELCYIPGKVLRSIIHKNSRFKEYLYNLATAKDNEQKRKFSINTQLDLSVNDDQELIAGISTIKDEIYLKTHKQKVNKAYFPSPTQRVTHLWQHITRRYPFFEQQSGSDCGAACLVMVARYWGKKFSVNRIRDIANVDANGASLRGLSAAAESIGFSTRPVKASIDQLAKQKLPAIAHWEGKHYIVVYEITRNQVIVADPAIGQRSLTYPEFKTGWQGYTLLLQPTALIKELKNHTTPFWQFFNLASPHGQVLLEVFIASLVIQIFGLVTPLFTQLLLDRVVVQGSTLTLTAVGLGLVIFGLFRVALTGLRQYLLDHTANKVNLAMIVGFITHTFRLPLRFFEFRYVGDIMARVQENRKIERFLTGEALSIVLDLLTVFIYVGLMFWYSWKMALLALVIVPPFFLLAIIATPFLQKISREIFAALAEESGYLIQSLTGVRTVKSLAIEQVVRWRWEEFLNKSIRKNFSGQIISNRLQVFSLTIESLVTTGLLWFGAWLVIQGELTIGQLVAFNMLIGNVINPFQRLTVLWNELQEVIIAVERINDVIDTEPEEDLQSQARYYLTDLRGDIIFDKVTFRYHPESETNVLENLSFEIKAGQTVALVGRSGSGKTTISKLVLGLYTPTDGKIFIDGHDITSISLSSLRQRVGVVDQDTFLFGGTIRDNLTLARPSATQAEIIEAAQLAGADEFIQKLPMSYETQIGEGGGLLSGGQRQRLAIARALLGNPRLLIFDEATSHLDVESERIIQTNLNRILKGRTTLIIAHRLSTVRNAHIILVLDRGVLIEQGNHEQLMAKKGHYYYLNHQQLN
>NZ_CP011304.1|WP_046661804.1|1796110_1796305_-|hypothetical-protein
MKNYTWEYIQKYPKQTKRLLGIDYQQLEQLMALGKLIHRKNQSEIEKTKIRINQPGSGTPPKLS
>NZ_CP011304.1|WP_071846438.1|1795074_1795851_-|IS5/IS1182-family-transposase
MLVYLRHHLSFQILGLIFQVSESTAHNIFTYWQKLFEGELPPSLLEQIKKCQEEEIIIEQLRDYELIVDSAEQPVERPTDYQEQKIYYSGKQKRHTLKSQFIVLPKAEDIVDVVIGQPGPTSDIKICRQTLSKFDSQQTFIGDKAYLGENQIRTPDKKPKNGELTENQIKENKVLSSRRIFVEHLIRVVKVFKVVQERFRLNKSRYKSVLLTVCGLVRLRISALILEVIEGEQSGEVIDVIISHSFPSKLDFVSSNPD
>NZ_CP011304.1|WP_103672700.1|1793910_1794135_+|peptidylprolyl-isomerase
MSFYDVTDKYIEDKELRRQGGYLGVQRRQDLRPEISAAVFATKPPQLLKPIVKAKGISLILVEEIIQRNWMIST
>NZ_CP011304.1|WP_046661802.1|1793037_1793895_+|alpha/beta-hydrolase
MKTQIIDKTVTVRGVPHYYEWIRQSESAQKKPVMVFIHGWGGSGRYWRSTAAAICDRFDCLLYDMRGFGRSKLPEKSPDLSYDLEEYALDLALFLDSLEIEKIYLNSHSMGASVATFFITMYPERVVKAVLTCNGIFEYNKAAFAAFHKFGKYVVQFRYDWFLKVPFADQLFMARFLHRSIPKSERIAFLEDFLAADYEAALGTIYTSVSEKAVEIMPGKFAEIKVPTLLVSGEKDIIIPAKMGKMAADLNNNIQYVEMANTAHFPMLEDAPTYLQKLQDFLEIN
>NZ_CP011304.1|WP_004160464.1|1792850_1793060_+|hypothetical-protein
MLNTVPAIIKEGRIELLESVPIPEGTRVLVTLIPEETNSDFWQKVSETALAKIWDNLEDDIYHENSNNR
>NZ_CP011304.1|WP_046661801.1|1791494_1792829_+|ATP-dependent-protease-ATP-binding-subunit-ClpX
MSKYDSHLKCSFCGKSQEQVRKLIAGPGVYICDECVELCNEILDEELMEPPSPVAPVEERPNKRRSGQNKTTWEQIPKPREIKKYLDDYVIGQNEAKKVLSVAVYNHYKRLKDIQTQKAGGGSPEDSIELQKSNILLIGPTGSGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQRGIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQIDTSNILFICGGAFVGLDKVIDQRLGKKSMGFIQPGDGQASKDKVAAGLLKQMTPDDLVKFGMIPEFVGRIPVLAALSPLDEEALIAILTQPRNALVKQYQKLLKMDNVQLEFKSDAVLAIAQEAYRRKTGARALRGIVEELMLDVMYELPSRKDVKRCLITREMVEKRSTAELLVHPSSLPSQESA
>NZ_CP011304.1|WP_002797385.1|1790782_1791484_+|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP
MLESRSPDYPITSNCRPAIYANTGRNSLANVLPVVIEQSGMGERAFDIYSRLLRERIVFLGTPVDDQVADSIVAQLLYLEAEDPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVATICFGLAASMGAFLLCGGAAGKRMSLPSSRIMIHQPLGGAQGQASDIAIQAKEILYIKQRLNTMLAHHTGQPYDRIANDTERDFFMSAVEAKEYGLIDQVISRPELPDPTVPVTSL
>NZ_CP011304.1|WP_046661798.1|1789093_1790491_+|trigger-factor
MKVIQEKLPASQIGLEIEIPAETTKNTHEKVVNNLAKSANIPGFRPGKVPRQILLQRLGSKAVKAAVIEELIENCLESALKQEGIESLGTPQLLSQFEDLIAAYEPGKALTFSVSVDVAPTIILGDYENLSVTAEETVYDPESVENWFKERQEQLATLVPVEDRGAQLGDVAIVDYRGKSAETGEDIPDIDGEDLRVDMEPGRFIEGMVEGIVGMKPEEVKEMTLTFPEDYPKEDVAAKAVIFTITMKELKAKELPELDDDFAQEVSDQETIAELRASLEKRFQEQAEKETKDSIYDALTQELVKGATLDLPETLIEKEVTHILTQSFMQFQQMGLDVNQLFTKDNIPKMRESARPDALESLKQTLVVQELAKVAGIEVSPEAVTEKIAKIMAQLSDRDIDRQRLEQVITEEILAENTLEWLKGKATITLVPKGSLEEEASEEEETEETFAFTEVEVLAAEAEEE
>NZ_CP011304.1|WP_046661796.1|1787731_1788769_-|aspartate-semialdehyde-dehydrogenase
MSQKVRVAILGATGAVGTELLELLASRQFPLASLKLLASERSAGKTLDFQGESLLIEAVNERSFQDVDIVLASAGGSTSKAWAKTIVESGATIIDNSSAFRMNPEVPLVVPEINPDSVDNHRGIIANPNCTTILLGVAIWPLHQVQAIERVVVSTYQSASGAGARAMEEVKEQAQAILEHRLPPTNSFPYPLAFNLFPHNTPINGQGYCEEEMKMVNETRKIFACPGLRVSATCVRVPVLRAHSESVNLEFSRPFSVVKAREILESAPGVKLVEDWDANYFPMPIDATGRDEVLVGRIRQDISHPNGLELWLCGDQIRKGAALNAVQIAELLVKKNLVGSRLATV
>NZ_CP011304.1|WP_046661806.1|1801170_1801908_+|peptidylprolyl-isomerase
MSQSVAITAEDILKQVKLSLQIPDIIESIISRQIITDAATEAGITVDNEELQQAADTLRLLQKLRGVQETFAWLEKHHLSVDDLEEIAYITVISEKLMTHLFAEKVEPYFYENQLDYTGVVMYEVVLDDEDLAMELFYSIQEEEMSFYDVAHQYIQDVELRRQGGYRGILSRKDLKPEISAAVFATTPPEVLKPIVTSKGVHLILVEEILQSELDNKLRCQIVSELFGEWVINQIESVSVVTNLG
>NZ_CP011304.1|WP_046661807.1|1802011_1802197_-|hypothetical-protein
MANITISDLRPAGADLFSDSESYLTDLTDSEMLDTLGGGGSITICWQNKTTRWRSISICWD
>NZ_CP011304.1|WP_002738203.1|1802641_1803004_+|hypothetical-protein
MSGINREIYLENRTSLIDKHLPETEKSQRELEIEGIVYLFNNRQTMERVAEEIKQRGERTGAADSEDKYERYGLFFAEPIGYILKLDGTRIPLHYGEIKIKKSTGKYHVIPRTRPRTTKS
>NZ_CP011304.1|WP_002737941.1|1802963_1803254_+|hypothetical-protein
MSYLVPDRAPQNPENAKTQITPTEKTQWEFAEIWVDPWLSPPYILMLVKEQSGKFSIQNPAQNYQSIFTSDTYEESLMWLLEDEYERVTGRFCQPE
>NZ_CP011304.1|WP_046661808.1|1803407_1804511_-|hypothetical-protein
MSLLNSQFHHLAPEVRGRLKEVLLDIVENVEISANFSIRHPDYQPWELPAEMLSRIQALPKEIQDKYMSLQLRSFLYGIYYNGSMQASQALGSENKGQQLDLENNSFAGVAMDFYLQLEAANKGEGYFDSGWSILREETDGSLAVTKGGLRLHIQRDKHLQESEKAAAVGDVVSILMPKNLVQNGFYMAVGNAGLQREEAMVRLYFNVTPEGAVAVMAGLTERLNERGIPFSFKALYNPVDYQRYDAGVLYFGKTDYELVRQVVANVYQQNQSVFKPEIPLFTLELAPGLGLAEEPDKKFGSEESFGMNRCQIIANGLLMAWQQEDNSAAGRIAAISEQFSGLGIDWQRPYLNADSEDVYQGLELAS
>NZ_CP011304.1|WP_046661809.1|1804535_1805705_-|aminoglycoside-phosphotransferase-family-protein
MKFVLSSQNVYDYLIDQKICDRSQENPGVEQIQAKNFNLLVTLPEGRKLLVKQEQFINLEKETVGEFFGEWRIPKFLENFPEIDHWRSFLPELLLHDADNSILVSTYLDNYQDLAEFYSKENLFPAQVATQIGSCLATIHRDTWNQSIYREFFVKEEFAGKPKVSPLLLESLERIGPEIFGMAPMDGLKFFALYQRYDSLGEAVHRASETISPICLTHNDIKLNNILLNRNWEDINGNAIRLIDWERSDWGDPAFDLGMAIASYLQIWLGSLVISNSLSIEESLRLATTPLELLQPSIGGLTLAYLETFPEILEYRPDFLKQVVQLAGFSLIIGILAMIQYQKTFNNTGIAMLQVAKALLSRPESSMPTIFGATATQLNQINSSVVGKV
>NZ_CP011304.1|WP_046661810.1|1806376_1807327_-|undecaprenyl-diphosphate-phosphatase
MMFPLLKKSYKWLGLAIITVILAITPAAIAQSTTSAIPLAKINWLQAIFLGFVQGVTEFLPISSTAHLKAIPVFLGWGDPGVTYTAVIQLGSIAAVLSYFWQDLRQISTGMVKAVASSDYRSQDFRLALGIILGTIPIVFFGLLMKLFIPDLDNSPLRSMTAIACASIVMSLLLGTAEKIGKHKRSFETLRQKDGVLMGLAQALALIPGVSRSGSTLTAGLFMGLERAVAARFSFLLGIPAITLAGLVEFKGVLDQINTSELIPLAIGVISSALFSYLSIAWLLDYLKKQSTWVFVWYRLFFGVTILIGVALGRFS
>NZ_CP011304.1|WP_046661811.1|1807599_1808331_+|glutathione-peroxidase
MLPNREGQRVPDVTFPVRQNNQWVNITSEELFKGKTVVLFALPGAFTPTCSTSHLPGYNELAPVFRENGVDTIVCLSVNDTFVMNEWAKDQECDNVVLIPDGNGEFSAGMGMLVDKADLGFGKRSWRYSMLVKDGVIEKMFIEPEEPGDPFKVSDAETMLHYINPEAKKPPLVSLFSKVGCPYCLRAKKMLEEKGLQYEEIILGRDATSRSLRAMSGNTTTPQVFIDGQLIGGSEELAAYLGA
>NZ_CP011304.1|WP_046661812.1|1808544_1809078_+|DNA-starvation/stationary-phase-protection-protein-Dps
MVATPVKTKTTGQYYSTRIDLALDIRKAIVEILSQTLAASLDLKTQVKQAHWNVKGLNFYQLHSLFDEMATELEGYGDMVAERITALGGTALGTARIAAANSILPEYPADIVDGSEHLVALAERYALYASHLRSAIDSTGNQGDADTADLYTEISRDIDKRLWFLEAHLIKSEDVIG
>NZ_CP011304.1|WP_046663665.1|1809121_1810405_-|protein-kinase
MLDQVLHSRYQVQQLLGKKTILARDRHTTQLVIIKLISVPRGQGNQFIGEITSKIALLRQLSHPSLPKYLDSFEIDSSQEQIIAIVRPYLSAQPLENYLNSSYLLAEQDLKQIAKYLLEILSYLHQQDFPINHGNIKLSNILLDTQSHRFYLVDFAFDSDSPTTDLQDIGKTLISLATGIKHRYIPENFEQKTNLSAFFIYWLKRLSNSHPDSHFRSVTEALASLYSCQLILVSIGNLTKPYGSEVTVYKTDNLLEIKIASKTKQKFFNNLKTQLRQFLPSLFFTIILLTIVGIYDLKLVAFLIPIILIFLLNLISSSLSWQLWKSFWQGELELKITPKKVSLYQKLWGLKFKLTADAASWEIYSLIRRNVTVTMQGENVNIIPPSLVLVANHREYIITASEDVSEAELDWLAQQLSDWLRLPITRI

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Crispr_ID: NZ_CP011304_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011304_11

1867756-1867854

TypeV

Consensus_repeat	Method
TCTTTACTAGGGGATAAGTTTGTACTTGTTAAG	CRISPRCasFinder

1 spacers

cas14j

The CRISPR arrays of NZ_CP011304_11

>merge|NZ_CP011304|11|1867756-1867854|CRISPRCasFinder
TCTTTACTAGGGGATAAGTTTGTACTTGTTAAGAATACATCTGTATCCCCTAGTAAATCTTCCCGTTCTTTACTAGGGGATAAGTTTGTACTGGTTAAG

>NZ_CP011304|11|11|1867756-1867854|CRISPRCasFinder
TCTTTACTAGGGGATAAGTTTGTACTTGTTAAG	AATACATCTGTATCCCCTAGTAAATCTTCCCGT
TCTTTACTAGGGGATAAGTTTGTACTGGTTAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011304.1\|WP_046660511.1\|1878611_1879601_-\|transposase	unknown	unknown	gnl\|CDD\|372577
NZ_CP011304.1\|WP_046661862.1\|1882492_1883605_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	cas14j	-	gnl\|CDD\|223747
NZ_CP011304.1\|WP_071846442.1\|1881725_1882097_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176472
NZ_CP011304.1\|WP_046661858.1\|1873984_1876219_-\|M6-family-metalloprotease-domain-containing-protein	unknown	unknown	gnl\|CDD\|274507
NZ_CP011304.1\|WP_046661854.1\|1865515_1865899_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375906
NZ_CP011304.1\|WP_080694069.1\|1881119_1881557_+\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350248
NZ_CP011304.1\|WP_046661859.1\|1876290_1876614_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046661857.1\|1870804_1873825_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227265
NZ_CP011304.1\|WP_046661850.1\|1862660_1862924_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_052734171.1\|1862922_1863432_+\|ricin-type-beta-trefoil-lectin-domain-protein	unknown	unknown	gnl\|CDD\|366226
NZ_CP011304.1\|WP_046661856.1\|1868787_1869750_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271195
NZ_CP011304.1\|WP_080949805.1\|1867138_1867447_-\|ASCH-domain-containing-protein	unknown	unknown	gnl\|CDD\|119346
NZ_CP011304.1\|WP_046663670.1\|1865153_1865537_+\|DUF433-domain-containing-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046663675.1\|1880872_1881115_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182082
NZ_CP011304.1\|WP_046661851.1\|1863659_1864106_+\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350222
NZ_CP011304.1\|WP_103672714.1\|1865914_1866609_+\|IS1-family-transposase	unknown	unknown	gnl\|CDD\|224576
NZ_CP011304.1\|WP_046661853.1\|1864827_1865070_+\|DUF433-domain-containing-protein	unknown	unknown	gnl\|CDD\|377269
NZ_CP011304.1\|WP_008201831.1\|1861881_1862346_+\|DUF29-domain-containing-protein	unknown	unknown	gnl\|CDD\|366774
NZ_CP011304.1\|WP_046661852.1\|1864092_1864305_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046661863.1\|1887257_1887635_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP011304.1\|WP_046661862.1\|1882492_1883605_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.32174e-71
NZ_CP011304.1\|WP_071846442.1\|1881725_1882097_+\|hypothetical-protein	gnl\|CDD\|176472	cd05468, pVHL, von Hippel-Landau (pVHL) tumor suppressor protein. von Hippel-Landau (pVHL) protein, the gene product of VHL, is a critical regulator of the ubiquitous oxygen-sensing pathway. It is conserved throughout evolution, as its homologs are found in organisms ranging from mammals to the Drosophila melanogaster, Anopheles gambiae insects and the Caenorhabditis elegans nematode. pVHL acts as the substrate recognition component of an E3 ubiquitin ligase complex. Several proteins have been identified as pVHL-binding proteins that are subject to ubiquitin-mediated proteolysis; the best characterized putative substrates are the alpha subunits of the hypoxia-inducible factor (HIF1alpha, HIF2alpha, and HIF3alpha). In addition to HIF degradation, pVHL has been implicated to be involved in HIF independent cellular processes. Germline VHL mutations cause renal cell carcinomas, hemangioblastomas and pheochromocytomas in humans. pVHL can bind to and direct the proper deposition of fibronectin and collagen IV within the extracellular matrix. It works to stabilize microtubules and foster the maintenance of primary cilium. It also has been reported to promote the stabilization and activation of p53 in a HIF-independent manner and, in neuronal cells, promote apoptosis by down-regulation of Jun-B.	1.06475e-21
NZ_CP011304.1\|WP_046661858.1\|1873984_1876219_-\|M6-family-metalloprotease-domain-containing-protein	gnl\|CDD\|274507	TIGR03296, hypothetical_protein, M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than pfam05547.	2.73019e-48
NZ_CP011304.1\|WP_046661854.1\|1865515_1865899_+\|hypothetical-protein	gnl\|CDD\|375906	pfam18480, DUF5615, Domain of unknown function (DUF5615). This is a domain of unknown function found in potential toxin-antitoxin system component.	1.95771e-05
NZ_CP011304.1\|WP_080694069.1\|1881119_1881557_+\|PIN-domain-containing-protein	gnl\|CDD\|350248	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins. This subfamily includes Mycobacterium tuberculosis VapC27 and VapC40. It belongs to the VapC (virulence-associated protein C)-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	5.81306e-16
NZ_CP011304.1\|WP_046661857.1\|1870804_1873825_-\|hypothetical-protein	gnl\|CDD\|227265	COG4928, COG4928, Predicted P-loop ATPase [General function prediction only].	1.84379e-19
NZ_CP011304.1\|WP_046660511.1\|1878611_1879601_-\|transposase	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.7635e-33
NZ_CP011304.1\|WP_052734171.1\|1862922_1863432_+\|ricin-type-beta-trefoil-lectin-domain-protein	gnl\|CDD\|366226	pfam00652, Ricin_B_lectin, Ricin-type beta-trefoil lectin domain.	1.29858e-11
NZ_CP011304.1\|WP_046661856.1\|1868787_1869750_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271195	cd01195, INT_C_like_5, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain contains six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	1.1981e-56
NZ_CP011304.1\|WP_080949805.1\|1867138_1867447_-\|ASCH-domain-containing-protein	gnl\|CDD\|119346	cd06554, ASCH_ASC-1_like, ASC-1 homology domain, ASC-1-like subfamily. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation. The domain has been named after the ASC-1 protein, the activating signal cointegrator 1 or thyroid hormone receptor interactor protein 4 (TRIP4). ASC-1 is conserved in many eukaryotes and has been suggested to participate in a protein complex that interacts with RNA. It has been shown that ASC-1 mediates the interaction between various transciption factors and the basal transcriptional machinery.	2.33547e-22
NZ_CP011304.1\|WP_046663675.1\|1880872_1881115_+\|hypothetical-protein	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	7.40902e-05
NZ_CP011304.1\|WP_046661851.1\|1863659_1864106_+\|PIN-domain-containing-protein	gnl\|CDD\|350222	cd09874, PIN_MT3492-like, VapC-like PIN domain of the hypothetical protein MT3492 of Mycobacterium tuberculosis CDC1551 and other uncharacterized, annotated PilT protein domain proteins. Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis CDC1551, hypothetical protein MT3492, and similar bacterial and archaeal proteins are included in this subfamily. They are PIN domain homologs of the Mycobacterium tuberculosis VapC and Neisseria gonorrhoeae FitB toxins of the prokaryotic toxin/antitoxin operons, VapBC and FitAB, respectively, which are believed to be involved in growth inhibition by regulating translation. These toxins are nearly always co-expressed with an antitoxin, a cognate protein inhibitor, forming an inert protein complex. Disassociation of the protein complex activates the ribonuclease activity of the toxin by an, as yet undefined mechanism. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	3.7634e-08
NZ_CP011304.1\|WP_103672714.1\|1865914_1866609_+\|IS1-family-transposase	gnl\|CDD\|224576	COG1662, InsB, Transposase and inactivated derivatives, IS1 family [DNA replication, recombination, and repair].	3.29419e-31
NZ_CP011304.1\|WP_046661853.1\|1864827_1865070_+\|DUF433-domain-containing-protein	gnl\|CDD\|377269	pfam04255, DUF433, Protein of unknown function (DUF433).	1.0878e-15
NZ_CP011304.1\|WP_008201831.1\|1861881_1862346_+\|DUF29-domain-containing-protein	gnl\|CDD\|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	2.35453e-64

>NZ_CP011304.1|WP_080949805.1|1867138_1867447_-|ASCH-domain-containing-protein
MKAISLWQPWASLVANGLKLYETRGWPTKYRGVLAIHAAKRPLCKQGKSLISHLNRAFNLSIDGDKLPLGAIVALTDLTDCLEMVSEANATDVPNSIIENLG
>NZ_CP011304.1|WP_103672714.1|1865914_1866609_+|IS1-family-transposase
MQCPECKSTHIRKNGINKQGKQNHICVTCGRQFINNYEKQKGYDEKTKRECLTAYVNGMGFRGIERLKGVHHTTVINWVKSVGELLPVAYDPETIPEVGELDELETFVGSKKTKFWVWTAVDHFKKGILGWVIGDHSSETFRPLWELVKSWGCYFYVSDGWSVYPCFIAEGDHIISKTYMTRVEGENTRLRHYLARLHRKTLCYSKSTEMLGYSIRLLIHYLKFQEVPIPY
>NZ_CP011304.1|WP_046661854.1|1865515_1865899_+|hypothetical-protein
MTGRNFLVDHNLRGHSLVLAGVLAASGWLDLISIRFILFEEVGLAVTSDDRVVWRYAQANQMILITANRSMKGKDSLEQVMREENTPTSLPVVTIGNIERLLAEPDYRDRCVNRLVDIVVRRCIIEI
>NZ_CP011304.1|WP_046663670.1|1865153_1865537_+|DUF433-domain-containing-protein
MAPASNGKTAIIRTERGLTIAGTRITLYDVMDYITEHYPPKFIRAMLALNDEQLNAALSYIETYRAEVEAEYQLVLKEAEELRQYYEEQNRERVARIAAKPPKPGTEAIRAKLQAEKAKLASRAGIF
>NZ_CP011304.1|WP_046661853.1|1864827_1865070_+|DUF433-domain-containing-protein
MKLDRITSHPNRMNGQPCIRNLRLTVRRVIELLATYPDRAELHQEFPELEDEDIRQALIFASSYLDDRIIELPNRYEAVT
>NZ_CP011304.1|WP_046661852.1|1864092_1864305_+|hypothetical-protein
MIKVKNEQQVLQEGLCVLFMNMEPSKVTRFWAACNSGSGDYLKLKEELFGQESVASLYDKILKFQESKPN
>NZ_CP011304.1|WP_046661851.1|1863659_1864106_+|PIN-domain-containing-protein
MTKVYLDTSAYNRPFDDQTQPKIFLESQAVVIILQMVETRMVDLVSSSVLEYENSRNPYPLKQEAMNRYLQMAEARQMVDEAIRQRAEELGHNGLKAVDALHVACAEALRSDYFITCDKRLINRCARLMLKVVNPVDFVLEVNGDDQS
>NZ_CP011304.1|WP_052734171.1|1862922_1863432_+|ricin-type-beta-trefoil-lectin-domain-protein
MGAKECRKPSRCVEAIERVENIVNTNGSSESVRQLESWIGSASQNENCAISLSRHLTVNVNIVGLTRSAVAELDRLRNPTITSLTSGNALVNAGGKCLDIHAPDMRNNGSRVQVWDCNGQPQQQWSFSGNALVNAGGKCLDIHAPDMRNNGGRVQVWDCNGQPQQQWRF
>NZ_CP011304.1|WP_046661850.1|1862660_1862924_-|hypothetical-protein
MCRPEKQTPLAKPDAETALTKATTAATVPNVTGSELAGRKAGKKCTCKATKIEMKSMLILRNRKALENLILHCSKILRLIDEEIISV
>NZ_CP011304.1|WP_008201831.1|1861881_1862346_+|DUF29-domain-containing-protein
MDNKTLYEQDFYLWIRTTINQLQARQFERVDLENLLEELASMGRSEKRTIKSLLTRLLEHLLKLKYWAAERERNEGHCKGEIRTFRLDILDELKDSPSLKPYLLEIFDECYLSARKNASDRSQLPLDTFPAIPLGSLEQILDEDWFPAGDNLEI
>NZ_CP011304.1|WP_046661856.1|1868787_1869750_+|tyrosine-type-recombinase/integrase
MSATDLTKREDIAPLDNPDVLAQLLAAKRSPRTRHAYAGDLKDFFVFAFGCEEPTPGVTQEFLSLDRFAALSLVLRYKAHLRDERGLAEATRNRRLSAIKSLVRLANQLGQCDFNLSELSGDKVVRYRDTTGVSKEVYRDLLAVPDRSTLKGKRDYAILRLLWDNALRRGEIESADIKDLDTEGRTLAIFGKGRGQQKETVSLSRPTLDALVDWLRERRELDIRQPLFIALDRCSRGHRLTGSAIHKLVAKIAAAAGVNKKMSPHRVRHSGITAALDATGGDVRRVQKLSRHADLNTLMIYDDNRKNVQGEISDLLAGLV
>NZ_CP011304.1|WP_046661857.1|1870804_1873825_-|hypothetical-protein
MKRKALVIGVNQYKEGIPCPQHSLKDAEDIAELLRTIGQFDQVQILLNQFEQQDKDHKNPYEPDQLKFLIEQLFNPQDGDTETALFYFSGNGAEIYEAEGKETQKGELLLTDFPNPLNESSSEHTSELRSRSISLKWLHDQLEKSPVKQQIVWLDSDFSNLFIDLFSQTSSEVKYDRCFIAASYDYAGENSTHGVLTDALLSCLNPVIKILITNYTLEDALINTFNWQKNLIKNIGNRILLTGRNVRPQKLWNDLAEGKDLLNLKSEADALADMLLLRDLEPPLAVGILGGWGSGKSFIMNLMQQRMNEIRSASLTKKQTWGKEEEAFPYVGHIYQIKFDAWTYAKADLWYSLTQTIFYEFNRQYTLEQQIEQSLKKVNRSQLEGGKFWKALNAMSEFDRTASLRELANFSEQTYNELEKSKSDQEFSSSLWEKIGDIRKNEKSELQNLKERLRKENRKLRGLILRKMPSYFLQKNWLSLVAFLAGLSIVAFPLLPDQLRDQLPKKLSDVLSTYTTLIQTGGFITALGTGISLLQKTQEEQEKILTGLKQIAGEAKEKFEVGKDVWVTLQQEILQSDRDIEQQVNKIKRHELQIEQLQQQIGLVSNYPTLNTFLEDISKNELYEKKLGYLHQLQRNLAELTNCLHYNPKMKDNDEQFSKLEKTFPRGPARIVLFIDDLDRCPPDRVVEVLEAVQLLVKTPLFIAVVAIDERYVTRALEKYYAGVLFHQGRPSGTDYLEKIIQIPYRIRPVAHSALANYLHQQMEVEESDEETSNVAVSTENISTISVDNSQSNKTDFTENKVGGKLLDSDRDKSVTILTPEKIKFKSEEFKILLECCRHTDLPPRMIKRLVNIYKIFKIIEFLSNKVWLKSNEQTKAILSVLSLSAYYPDLIREVFDDLDIQFEELESQLEGLKQEEKQQQMQKLKLLDSLLKTLESLLNTSEEKDAPHLQREYRRLHHDATILLSGITLAQFDLETFNLVRSFCFFGDVGYSPEDSQRTVRSHQG
>NZ_CP011304.1|WP_046661858.1|1873984_1876219_-|M6-family-metalloprotease-domain-containing-protein
MSAIFGETVIFQQDNGLDVELVVFGDEFYARYETKDGYTAVYDPERGLYCYAVLLNGRFASSGVPISKHPPSDIRRGLKEAETIRNEKFERRYADLRPPQPGAAANVARTLGPNNGLLEGRRVSEGHIRGLTVLVEFADLTSAVTAADVEAMLNAPNYRENGNFCSVREYYHLMSNGKLDYSNVVVGPIKLSQNQRYYVQNLLCREALDKVVNQLRINLSQFDSCGESIVDALSFMYAGRTVYEGNLWPHNSELNLIYNGIKVRYYTIQSLGRERVDLSIGTFCHESGHLLCRLPDLYDYGSRDGDFEKSAGMGYYCLMSAGNHLNNGHTPAPICGYLRDLVGWCDRQVRLNSPGVYESKQGDYGTLMKYETDRANEYFIIENRTQRGLDAYLPDSGLAVYHCDTLGSNEWQGGTRERHYQCGLLQADGHLDIESNRNQGDSTDLFKRVDGVALSYATTPSTRDWDSSDSGLALADISEPGEVIRLKVGSLVPSNVVTGKVTADLLIPDNKREGISCAIAISQAGKVKSLSVSIDITHTYIGDLQVELQSPSGKKVLLHDRAGGSRRDWQQTYSSSSTPALSVLNGELIAGDWLLNVRDLASRDIGRLNRWNIEIEYESAGQVARGEVSPNLSIPDNTPTGISSAIAIAQSGTLKDISVGVVIPHTYIGDLLVEIVAPSGQSVTLHNISGGSKDNLRMTYDRTSTPALEALIGQPIQGNWSLRVKDLQRLDTGKLEKWSLQLMY
>NZ_CP011304.1|WP_046661859.1|1876290_1876614_-|hypothetical-protein
MSAIFGETLTFPQENGPEVELVVFGDEFYSRRETKDGYTVIYDDKLGQYGYAILCEGEFASSGIPISAPPSPGLQPHLEETEPIRREKFARRYTQLRPSDPDLPSQT
>NZ_CP011304.1|WP_046660511.1|1878611_1879601_-|transposase
MKNYTWEYIQKYPKQTKRLLGIDYQQLEQLMALGKLIHRKNQSEIEKTKIRINQPGSGTPPKLSEEEQIVLMLVYLRHHLSFQILGLIFQVSESTAHNIFTYWQKLFEGELPPSLLEQIKKCQEEEIIIEQLRDYELIVDSAEQPVERPTDYQEQKIYYSGKQKRHTLKSQFIVLPKAEDIVDVVIGQPGPTSDIKICRQTLSKFDSQQTFIGDKAYLGENQIRTPDKKPKNGELTENQIKENKVLSSRRIFVEHLIRVVKVFKVVQERFRLNKSRYKSVLLTVCGLVRLRISALILEVIEGEQSGEVIDVIISHSFPSKLDFVSSNPD
>NZ_CP011304.1|WP_046663675.1|1880872_1881115_+|hypothetical-protein
MELVTLDRSRCIQIPETLLEQLGIEYDSQFQVEVQDGKLVLNPIKEEPKVYYENDVLVVDSQLLVNTEAFIEELRQERMS
>NZ_CP011304.1|WP_080694069.1|1881119_1881557_+|PIN-domain-containing-protein
MIKVLFDTSVLVASILVNHEQHSACISWLTRVKRGEIQGYIGTHTLAELYAILSAFPAKPRLSPQLVQQLIKENLDSFEIISLTSDDYKAVINLMVTLNLRGGAIYDALIAYGSLKAEVDHLLTLNLKHFIRFGGRIEKISMEPR
>NZ_CP011304.1|WP_071846442.1|1881725_1882097_+|hypothetical-protein
MLLKWLKITGLSLIIWNLCYSAESQTSAEILRPRSCRVESELRSLNSNVSTYIQVINRSSSSVKVYWIDFNGKRQHYFDLDPLQSRDQQTYVTHPWLIAQSGANQPCIHIFLPIPQKGIIIID
>NZ_CP011304.1|WP_046661862.1|1882492_1883605_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MEKAYSFRFYPTPEQESLLRRTLGCVRLVYNKALHERTQAWYERQERVGYAQTSSMLTDWKKQEELDFLNEVSCVPLQQGLRHLQTAFTNFFAGRTKYPNFKKKHQGGSAEFTKSAFKFKDRQIYLAKCTEPLPIRWSRQIPESCEPSTVTVRLHPSGRWHISIRFDDPTIQPLPPTDKAIGIDLGISSLVITSDGDKVSNPKHFKKHYQRLRKAQKSLSRKQKGSKNREKARIKVAKIHAKITDNRKDHLHKLTTQLVRENQTIVVENLAVKNMVKNPKLSQAISDVSWGEITRQLAYKCRWYGRNYIEIDRWFPSSKRCSNCGYIAEKMPLNIREWDCPDCGTHHDRDVNASKNILAAGLAVSVCRAT
>NZ_CP011304.1|WP_046661863.1|1887257_1887635_-|hypothetical-protein
MTEDIATPSKIWIITGDSDLQKTPTGARSSRDTGGRLEGKEKSPEVAATERSQVDVSKLKLEMQGFLKAMREMLDEADPPSAKIRLDEVELSVEINGEGQVSLFGIGGKAGGKGAMTFKFKRKDG

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Crispr_ID: NZ_CP011304_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011304_12

1882171-1882337

TypeV

Consensus_repeat	Method
CTCTCTACTCGCCCTTAGAAATC	CRISPRCasFinder

2 spacers

cas14j

The CRISPR arrays of NZ_CP011304_12

>merge|NZ_CP011304|12|1882171-1882337|CRISPRCasFinder
CTCTCTACTCGCCCTTAGAAATCCGTGAAATCGAAACATCATATTTCGCTGTACGCGTCTGGGTTGAACGGCTCTCTACTCGCCCTTAGAAATCCGTTGAATGGAAACTAACCAGTAAGATTCGTCAGCCGATGGATTCATAGTCTCTCTACTCGCGCTTAGAAATC

>NZ_CP011304|12|12|1882171-1882337|CRISPRCasFinder
CTCTCTACTCGCCCTTAGAAATC	CGTGAAATCGAAACATCATATTTCGCTGTACGCGTCTGGGTTGAACGG
CTCTCTACTCGCCCTTAGAAATC	CGTTGAATGGAAACTAACCAGTAAGATTCGTCAGCCGATGGATTCATAGT
CTCTCTACTCGCGCTTAGAAATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011304.1\|WP_103672714.1\|1891617_1892312_+\|IS1-family-transposase	unknown	unknown	gnl\|CDD\|224576
NZ_CP011304.1\|WP_046661862.1\|1882492_1883605_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	cas14j	-	gnl\|CDD\|223747
NZ_CP011304.1\|WP_071846442.1\|1881725_1882097_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176472
NZ_CP011304.1\|WP_103672703.1\|1892460_1893353_+\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NZ_CP011304.1\|WP_046661859.1\|1876290_1876614_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046661857.1\|1870804_1873825_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227265
NZ_CP011304.1\|WP_046661858.1\|1873984_1876219_-\|M6-family-metalloprotease-domain-containing-protein	unknown	unknown	gnl\|CDD\|274507
NZ_CP011304.1\|WP_046661871.1\|1893516_1894515_-\|adenosine-kinase	unknown	unknown	gnl\|CDD\|238573
NZ_CP011304.1\|WP_080949805.1\|1867138_1867447_-\|ASCH-domain-containing-protein	unknown	unknown	gnl\|CDD\|119346
NZ_CP011304.1\|WP_046661865.1\|1888981_1889536_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046661864.1\|1887649_1887874_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046663675.1\|1880872_1881115_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182082
NZ_CP011304.1\|WP_080694069.1\|1881119_1881557_+\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350248
NZ_CP011304.1\|WP_046661856.1\|1868787_1869750_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271195
NZ_CP011304.1\|WP_002746549.1\|1888160_1888394_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046661867.1\|1889950_1890553_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP011304.1\|WP_046660511.1\|1878611_1879601_-\|transposase	unknown	unknown	gnl\|CDD\|372577
NZ_CP011304.1\|WP_046661866.1\|1889684_1889954_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046661863.1\|1887257_1887635_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_103672714.1\|1865914_1866609_+\|IS1-family-transposase	unknown	unknown	gnl\|CDD\|224576

Protein	Function_ID	Function_description	E-value
NZ_CP011304.1\|WP_046661871.1\|1893516_1894515_-\|adenosine-kinase	gnl\|CDD\|238573	cd01168, adenosine_kinase, Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway. .	1.57029e-109
NZ_CP011304.1\|WP_046661862.1\|1882492_1883605_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.32174e-71
NZ_CP011304.1\|WP_071846442.1\|1881725_1882097_+\|hypothetical-protein	gnl\|CDD\|176472	cd05468, pVHL, von Hippel-Landau (pVHL) tumor suppressor protein. von Hippel-Landau (pVHL) protein, the gene product of VHL, is a critical regulator of the ubiquitous oxygen-sensing pathway. It is conserved throughout evolution, as its homologs are found in organisms ranging from mammals to the Drosophila melanogaster, Anopheles gambiae insects and the Caenorhabditis elegans nematode. pVHL acts as the substrate recognition component of an E3 ubiquitin ligase complex. Several proteins have been identified as pVHL-binding proteins that are subject to ubiquitin-mediated proteolysis; the best characterized putative substrates are the alpha subunits of the hypoxia-inducible factor (HIF1alpha, HIF2alpha, and HIF3alpha). In addition to HIF degradation, pVHL has been implicated to be involved in HIF independent cellular processes. Germline VHL mutations cause renal cell carcinomas, hemangioblastomas and pheochromocytomas in humans. pVHL can bind to and direct the proper deposition of fibronectin and collagen IV within the extracellular matrix. It works to stabilize microtubules and foster the maintenance of primary cilium. It also has been reported to promote the stabilization and activation of p53 in a HIF-independent manner and, in neuronal cells, promote apoptosis by down-regulation of Jun-B.	1.06475e-21
NZ_CP011304.1\|WP_103672703.1\|1892460_1893353_+\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	9.9981e-41
NZ_CP011304.1\|WP_046661857.1\|1870804_1873825_-\|hypothetical-protein	gnl\|CDD\|227265	COG4928, COG4928, Predicted P-loop ATPase [General function prediction only].	1.84379e-19
NZ_CP011304.1\|WP_046660511.1\|1878611_1879601_-\|transposase	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.7635e-33
NZ_CP011304.1\|WP_080949805.1\|1867138_1867447_-\|ASCH-domain-containing-protein	gnl\|CDD\|119346	cd06554, ASCH_ASC-1_like, ASC-1 homology domain, ASC-1-like subfamily. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation. The domain has been named after the ASC-1 protein, the activating signal cointegrator 1 or thyroid hormone receptor interactor protein 4 (TRIP4). ASC-1 is conserved in many eukaryotes and has been suggested to participate in a protein complex that interacts with RNA. It has been shown that ASC-1 mediates the interaction between various transciption factors and the basal transcriptional machinery.	2.33547e-22
NZ_CP011304.1\|WP_046663675.1\|1880872_1881115_+\|hypothetical-protein	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	7.40902e-05
NZ_CP011304.1\|WP_080694069.1\|1881119_1881557_+\|PIN-domain-containing-protein	gnl\|CDD\|350248	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins. This subfamily includes Mycobacterium tuberculosis VapC27 and VapC40. It belongs to the VapC (virulence-associated protein C)-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	5.81306e-16
NZ_CP011304.1\|WP_046661856.1\|1868787_1869750_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271195	cd01195, INT_C_like_5, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain contains six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	1.1981e-56
NZ_CP011304.1\|WP_046661867.1\|1889950_1890553_-\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	5.32639e-23
NZ_CP011304.1\|WP_046661858.1\|1873984_1876219_-\|M6-family-metalloprotease-domain-containing-protein	gnl\|CDD\|274507	TIGR03296, hypothetical_protein, M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than pfam05547.	2.73019e-48
NZ_CP011304.1\|WP_103672714.1\|1891617_1892312_+\|IS1-family-transposase	gnl\|CDD\|224576	COG1662, InsB, Transposase and inactivated derivatives, IS1 family [DNA replication, recombination, and repair].	3.29419e-31
NZ_CP011304.1\|WP_103672714.1\|1865914_1866609_+\|IS1-family-transposase	gnl\|CDD\|224576	COG1662, InsB, Transposase and inactivated derivatives, IS1 family [DNA replication, recombination, and repair].	3.29419e-31

>NZ_CP011304.1|WP_071846442.1|1881725_1882097_+|hypothetical-protein
MLLKWLKITGLSLIIWNLCYSAESQTSAEILRPRSCRVESELRSLNSNVSTYIQVINRSSSSVKVYWIDFNGKRQHYFDLDPLQSRDQQTYVTHPWLIAQSGANQPCIHIFLPIPQKGIIIID
>NZ_CP011304.1|WP_080694069.1|1881119_1881557_+|PIN-domain-containing-protein
MIKVLFDTSVLVASILVNHEQHSACISWLTRVKRGEIQGYIGTHTLAELYAILSAFPAKPRLSPQLVQQLIKENLDSFEIISLTSDDYKAVINLMVTLNLRGGAIYDALIAYGSLKAEVDHLLTLNLKHFIRFGGRIEKISMEPR
>NZ_CP011304.1|WP_046663675.1|1880872_1881115_+|hypothetical-protein
MELVTLDRSRCIQIPETLLEQLGIEYDSQFQVEVQDGKLVLNPIKEEPKVYYENDVLVVDSQLLVNTEAFIEELRQERMS
>NZ_CP011304.1|WP_046660511.1|1878611_1879601_-|transposase
MKNYTWEYIQKYPKQTKRLLGIDYQQLEQLMALGKLIHRKNQSEIEKTKIRINQPGSGTPPKLSEEEQIVLMLVYLRHHLSFQILGLIFQVSESTAHNIFTYWQKLFEGELPPSLLEQIKKCQEEEIIIEQLRDYELIVDSAEQPVERPTDYQEQKIYYSGKQKRHTLKSQFIVLPKAEDIVDVVIGQPGPTSDIKICRQTLSKFDSQQTFIGDKAYLGENQIRTPDKKPKNGELTENQIKENKVLSSRRIFVEHLIRVVKVFKVVQERFRLNKSRYKSVLLTVCGLVRLRISALILEVIEGEQSGEVIDVIISHSFPSKLDFVSSNPD
>NZ_CP011304.1|WP_046661859.1|1876290_1876614_-|hypothetical-protein
MSAIFGETLTFPQENGPEVELVVFGDEFYSRRETKDGYTVIYDDKLGQYGYAILCEGEFASSGIPISAPPSPGLQPHLEETEPIRREKFARRYTQLRPSDPDLPSQT
>NZ_CP011304.1|WP_046661858.1|1873984_1876219_-|M6-family-metalloprotease-domain-containing-protein
MSAIFGETVIFQQDNGLDVELVVFGDEFYARYETKDGYTAVYDPERGLYCYAVLLNGRFASSGVPISKHPPSDIRRGLKEAETIRNEKFERRYADLRPPQPGAAANVARTLGPNNGLLEGRRVSEGHIRGLTVLVEFADLTSAVTAADVEAMLNAPNYRENGNFCSVREYYHLMSNGKLDYSNVVVGPIKLSQNQRYYVQNLLCREALDKVVNQLRINLSQFDSCGESIVDALSFMYAGRTVYEGNLWPHNSELNLIYNGIKVRYYTIQSLGRERVDLSIGTFCHESGHLLCRLPDLYDYGSRDGDFEKSAGMGYYCLMSAGNHLNNGHTPAPICGYLRDLVGWCDRQVRLNSPGVYESKQGDYGTLMKYETDRANEYFIIENRTQRGLDAYLPDSGLAVYHCDTLGSNEWQGGTRERHYQCGLLQADGHLDIESNRNQGDSTDLFKRVDGVALSYATTPSTRDWDSSDSGLALADISEPGEVIRLKVGSLVPSNVVTGKVTADLLIPDNKREGISCAIAISQAGKVKSLSVSIDITHTYIGDLQVELQSPSGKKVLLHDRAGGSRRDWQQTYSSSSTPALSVLNGELIAGDWLLNVRDLASRDIGRLNRWNIEIEYESAGQVARGEVSPNLSIPDNTPTGISSAIAIAQSGTLKDISVGVVIPHTYIGDLLVEIVAPSGQSVTLHNISGGSKDNLRMTYDRTSTPALEALIGQPIQGNWSLRVKDLQRLDTGKLEKWSLQLMY
>NZ_CP011304.1|WP_046661857.1|1870804_1873825_-|hypothetical-protein
MKRKALVIGVNQYKEGIPCPQHSLKDAEDIAELLRTIGQFDQVQILLNQFEQQDKDHKNPYEPDQLKFLIEQLFNPQDGDTETALFYFSGNGAEIYEAEGKETQKGELLLTDFPNPLNESSSEHTSELRSRSISLKWLHDQLEKSPVKQQIVWLDSDFSNLFIDLFSQTSSEVKYDRCFIAASYDYAGENSTHGVLTDALLSCLNPVIKILITNYTLEDALINTFNWQKNLIKNIGNRILLTGRNVRPQKLWNDLAEGKDLLNLKSEADALADMLLLRDLEPPLAVGILGGWGSGKSFIMNLMQQRMNEIRSASLTKKQTWGKEEEAFPYVGHIYQIKFDAWTYAKADLWYSLTQTIFYEFNRQYTLEQQIEQSLKKVNRSQLEGGKFWKALNAMSEFDRTASLRELANFSEQTYNELEKSKSDQEFSSSLWEKIGDIRKNEKSELQNLKERLRKENRKLRGLILRKMPSYFLQKNWLSLVAFLAGLSIVAFPLLPDQLRDQLPKKLSDVLSTYTTLIQTGGFITALGTGISLLQKTQEEQEKILTGLKQIAGEAKEKFEVGKDVWVTLQQEILQSDRDIEQQVNKIKRHELQIEQLQQQIGLVSNYPTLNTFLEDISKNELYEKKLGYLHQLQRNLAELTNCLHYNPKMKDNDEQFSKLEKTFPRGPARIVLFIDDLDRCPPDRVVEVLEAVQLLVKTPLFIAVVAIDERYVTRALEKYYAGVLFHQGRPSGTDYLEKIIQIPYRIRPVAHSALANYLHQQMEVEESDEETSNVAVSTENISTISVDNSQSNKTDFTENKVGGKLLDSDRDKSVTILTPEKIKFKSEEFKILLECCRHTDLPPRMIKRLVNIYKIFKIIEFLSNKVWLKSNEQTKAILSVLSLSAYYPDLIREVFDDLDIQFEELESQLEGLKQEEKQQQMQKLKLLDSLLKTLESLLNTSEEKDAPHLQREYRRLHHDATILLSGITLAQFDLETFNLVRSFCFFGDVGYSPEDSQRTVRSHQG
>NZ_CP011304.1|WP_046661856.1|1868787_1869750_+|tyrosine-type-recombinase/integrase
MSATDLTKREDIAPLDNPDVLAQLLAAKRSPRTRHAYAGDLKDFFVFAFGCEEPTPGVTQEFLSLDRFAALSLVLRYKAHLRDERGLAEATRNRRLSAIKSLVRLANQLGQCDFNLSELSGDKVVRYRDTTGVSKEVYRDLLAVPDRSTLKGKRDYAILRLLWDNALRRGEIESADIKDLDTEGRTLAIFGKGRGQQKETVSLSRPTLDALVDWLRERRELDIRQPLFIALDRCSRGHRLTGSAIHKLVAKIAAAAGVNKKMSPHRVRHSGITAALDATGGDVRRVQKLSRHADLNTLMIYDDNRKNVQGEISDLLAGLV
>NZ_CP011304.1|WP_080949805.1|1867138_1867447_-|ASCH-domain-containing-protein
MKAISLWQPWASLVANGLKLYETRGWPTKYRGVLAIHAAKRPLCKQGKSLISHLNRAFNLSIDGDKLPLGAIVALTDLTDCLEMVSEANATDVPNSIIENLG
>NZ_CP011304.1|WP_103672714.1|1865914_1866609_+|IS1-family-transposase
MQCPECKSTHIRKNGINKQGKQNHICVTCGRQFINNYEKQKGYDEKTKRECLTAYVNGMGFRGIERLKGVHHTTVINWVKSVGELLPVAYDPETIPEVGELDELETFVGSKKTKFWVWTAVDHFKKGILGWVIGDHSSETFRPLWELVKSWGCYFYVSDGWSVYPCFIAEGDHIISKTYMTRVEGENTRLRHYLARLHRKTLCYSKSTEMLGYSIRLLIHYLKFQEVPIPY
>NZ_CP011304.1|WP_046661862.1|1882492_1883605_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MEKAYSFRFYPTPEQESLLRRTLGCVRLVYNKALHERTQAWYERQERVGYAQTSSMLTDWKKQEELDFLNEVSCVPLQQGLRHLQTAFTNFFAGRTKYPNFKKKHQGGSAEFTKSAFKFKDRQIYLAKCTEPLPIRWSRQIPESCEPSTVTVRLHPSGRWHISIRFDDPTIQPLPPTDKAIGIDLGISSLVITSDGDKVSNPKHFKKHYQRLRKAQKSLSRKQKGSKNREKARIKVAKIHAKITDNRKDHLHKLTTQLVRENQTIVVENLAVKNMVKNPKLSQAISDVSWGEITRQLAYKCRWYGRNYIEIDRWFPSSKRCSNCGYIAEKMPLNIREWDCPDCGTHHDRDVNASKNILAAGLAVSVCRAT
>NZ_CP011304.1|WP_046661863.1|1887257_1887635_-|hypothetical-protein
MTEDIATPSKIWIITGDSDLQKTPTGARSSRDTGGRLEGKEKSPEVAATERSQVDVSKLKLEMQGFLKAMREMLDEADPPSAKIRLDEVELSVEINGEGQVSLFGIGGKAGGKGAMTFKFKRKDG
>NZ_CP011304.1|WP_046661864.1|1887649_1887874_-|hypothetical-protein
MGKPQIAVRIPPSLLAELNQYVERVGTSKTDVIVSAIATYLGCAETVPLSQRIAEVERKIMELESLVKGKRDNI
>NZ_CP011304.1|WP_002746549.1|1888160_1888394_-|hypothetical-protein
MKLSTNIPDVLYQQIETLANKQNIPVEQLVTMALSAQISSWMTKDYLEEKAQQGSWEKFQQALAKVSDGEPEDYDKM
>NZ_CP011304.1|WP_046661865.1|1888981_1889536_-|hypothetical-protein
MPANAQNQTDYEALCRNRQSYGFSQEECDRWIREQNQRSPTNPSSNGRSAVNSAFIGEKVYKLRLRDAPTGNIGQQSIFSPGDLDREEWVVVTLINNQRVKVRHATNVMNKFWGTRKWYDHPATAIRLCAINGFDTTDCVTAQGDTIDLPEGKTIHDVQIDFKYVEGGSVYTRTVQIAPGTLPD
>NZ_CP011304.1|WP_046661866.1|1889684_1889954_-|hypothetical-protein
MTTGRYGDLIKKAREPENQNTGLSETQNTGLPESQTFGNQENQNEPEVNLCVKVPKSLRQHWAAEAKRQGTTMTAVIMAALSDRFGKPD
>NZ_CP011304.1|WP_046661867.1|1889950_1890553_-|ParA-family-protein
MKIITVTGYKGGVGKSTTAVHIATYFSDRGRTVLVDGDPNRTALGWAERGNLPFTVADERQAMKIIGGADFVIIDTPARPHSDDLKELAKGCELLILPTAPDVLSLQPMLETAKDLGDANYRALITIVPPPPNKEGEILRQELIEGSIPVFKSMIRRTVGYQKAALAGVPIRNLDDARLRAAWKDYKALGEEILAILEVL
>NZ_CP011304.1|WP_103672714.1|1891617_1892312_+|IS1-family-transposase
MQCPECKSTHIRKNGINKQGKQNHICVTCGRQFINNYEKQKGYDEKTKRECLTAYVNGMGFRGIERLKGVHHTTVINWVKSVGELLPVAYDPETIPEVGELDELETFVGSKKTKFWVWTAVDHFKKGILGWVIGDHSSETFRPLWELVKSWGCYFYVSDGWSVYPCFIAEGDHIISKTYMTRVEGENTRLRHYLARLHRKTLCYSKSTEMLGYSIRLLIHYLKFQEVPIPY
>NZ_CP011304.1|WP_103672703.1|1892460_1893353_+|IS630-family-transposase
MRPYSVDFRQKIIDVWKKEKISIRGLAQRFDVAKSFIQKLLKQHKETGDIRPRPQGGSPPTKLNSEQLIILIEIIESNNDATLEELSDLLYEKTQVKVSRATLGRLTQKLNYSFKKKTLHAAEKESDRVQQKRVEYWSQVREIEASKLIFIDESGVNLALLRLYARALIGRRARGRKPQKRGRNISIISAISLEKVVASVNIYGAVDAVTFEGFILKEVLPKIKEGDCLLMDNAKIHLGEMVREIIEQEKARLIYLPPYSPEFSPIENFWSKVKAILRKLKARTYKDLIEGIELAML
>NZ_CP011304.1|WP_046661871.1|1893516_1894515_-|adenosine-kinase
MGKQYNVYGIGNALVDMEFQVSPELLQELGIDKGVMTLVDENRQTQLMEKLALDCKRSGGGSAANTLVAIAQLGGRGFYSCKVGNDELGKFYLQDLRACGLHTNEHGGEKEVGITGKCLVFVTPDADRTMNTFLGITGEISERELVPSAIANADYLYLEGYLVTSPTAKAAAIKGREIAQAAGVKTALSLSDPNMAIFFREGLLEMIGTGLDFVFANESEALTISGSEEIESAIAYFKTIAKGFAITRGANGSLIYDGENLLEIDSHPVEAIDTVGAGDMYAGAFLYGITHGMGYKGAGNLASLAAARVVSTFGARLQTEEIQSLRDSIVLG

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Crispr_ID: NZ_CP011304_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011304_13

2096384-2096505

Orphan

Consensus_repeat	Method
AGTATTGGCAGTGTTGGCAGTAT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP011304_13

>merge|NZ_CP011304|13|2096384-2096505|CRISPRCasFinder
AGTTTAGGCAGTGCTGGCAGTATTTTAAGTCTCGCTAGTGCCAGCAGCATTTTAAGTCTGGTTAGTATCGGCAGTATGCTCAGTATTGGCAGTGTTGGCAGTATTCTTAGTATTGGCAGTGT

>NZ_CP011304|13|13|2096384-2096505|CRISPRCasFinder
AGTTTAGGCAGTGCTGGCAGTAT	TTTAAGTCTCGCTAGTGCCAGCAGCATTTTA
AGTCTGGTTAGTATCGGCAGTAT	GCTCAGTATTGGCAGTGTTGGC
AGTATTCTTAGTATTGGCAGTGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011304.1\|WP_046662023.1\|2090231_2092310_-\|glycogen-debranching-protein-GlgX	unknown	unknown	gnl\|CDD\|224440
NZ_CP011304.1\|WP_080949740.1\|2086660_2087410_-\|SIMPL-domain-containing-protein	unknown	unknown	gnl\|CDD\|225414
NZ_CP011304.1\|WP_046662026.1\|2094629_2096336_+\|potassium-channel-protein	unknown	unknown	gnl\|CDD\|224147
NZ_CP011304.1\|WP_046662022.1\|2089354_2090116_-\|DUF3887-domain-containing-protein	unknown	unknown	gnl\|CDD\|379023
NZ_CP011304.1\|WP_046662028.1\|2097834_2098044_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046662033.1\|2104909_2107663_-\|class-I-SAM-dependent-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|223934
NZ_CP011304.1\|WP_046662030.1\|2099455_2101114_+\|NAD+-synthase	unknown	unknown	gnl\|CDD\|237577
NZ_CP011304.1\|WP_002740011.1\|2097546_2097753_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046662029.1\|2098714_2099443_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|223979
NZ_CP011304.1\|WP_002802932.1\|2088009_2089308_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP011304.1\|WP_080949737.1\|2084433_2084907_-\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
NZ_CP011304.1\|WP_002757316.1\|2098151_2098718_+\|nicotinate-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|234611
NZ_CP011304.1\|WP_046662025.1\|2093540_2094479_-\|DUF4351-domain-containing-protein	unknown	unknown	gnl\|CDD\|316753
NZ_CP011304.1\|WP_046662031.1\|2101490_2102504_-\|folate-binding-protein-YgfZ	unknown	unknown	gnl\|CDD\|223431
NZ_CP011304.1\|WP_046662027.1\|2096704_2097316_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NZ_CP011304.1\|WP_046662032.1\|2103150_2104185_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NZ_CP011304.1\|WP_046662024.1\|2092588_2093458_-\|DUF4351-domain-containing-protein	unknown	unknown	gnl\|CDD\|316753
NZ_CP011304.1\|WP_002802888.1\|2102500_2102869_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046662020.1\|2085598_2085988_+\|AbrB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|372980
NZ_CP011304.1\|WP_002783777.1\|2084854_2085298_-\|RrF2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|273242

Protein	Function_ID	Function_description	E-value
NZ_CP011304.1\|WP_046662023.1\|2090231_2092310_-\|glycogen-debranching-protein-GlgX	gnl\|CDD\|224440	COG1523, PulA, Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism].	0
NZ_CP011304.1\|WP_080949740.1\|2086660_2087410_-\|SIMPL-domain-containing-protein	gnl\|CDD\|225414	COG2859, COG2859, Uncharacterized protein conserved in bacteria [Function unknown].	8.19467e-57
NZ_CP011304.1\|WP_046662026.1\|2094629_2096336_+\|potassium-channel-protein	gnl\|CDD\|224147	COG1226, Kch, Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism].	2.45711e-22
NZ_CP011304.1\|WP_046662022.1\|2089354_2090116_-\|DUF3887-domain-containing-protein	gnl\|CDD\|379023	pfam13026, DUF3887, Protein of unknown function (DUF3887). This domain family is found in bacteria and archaea, and is approximately 90 amino acids in length.	4.17862e-10
NZ_CP011304.1\|WP_046662029.1\|2098714_2099443_+\|NUDIX-hydrolase	gnl\|CDD\|223979	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism].	4.10687e-24
NZ_CP011304.1\|WP_046662030.1\|2099455_2101114_+\|NAD+-synthase	gnl\|CDD\|237577	PRK13981, PRK13981, NAD synthetase; Provisional.	0
NZ_CP011304.1\|WP_046662032.1\|2103150_2104185_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	0
NZ_CP011304.1\|WP_002802932.1\|2088009_2089308_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP011304.1\|WP_080949737.1\|2084433_2084907_-\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	8.37358e-27
NZ_CP011304.1\|WP_002757316.1\|2098151_2098718_+\|nicotinate-nucleotide-adenylyltransferase	gnl\|CDD\|234611	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase.	3.61705e-60
NZ_CP011304.1\|WP_046662025.1\|2093540_2094479_-\|DUF4351-domain-containing-protein	gnl\|CDD\|316753	pfam14261, DUF4351, Domain of unknown function (DUF4351). This domain is found in bacteria, and is approximately 60 amino acids in length.	9.09023e-23
NZ_CP011304.1\|WP_046662031.1\|2101490_2102504_-\|folate-binding-protein-YgfZ	gnl\|CDD\|223431	COG0354, COG0354, Predicted aminomethyltransferase related to GcvT [General function prediction only].	7.8577e-57
NZ_CP011304.1\|WP_046662027.1\|2096704_2097316_-\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	6.41268e-33
NZ_CP011304.1\|WP_046662024.1\|2092588_2093458_-\|DUF4351-domain-containing-protein	gnl\|CDD\|316753	pfam14261, DUF4351, Domain of unknown function (DUF4351). This domain is found in bacteria, and is approximately 60 amino acids in length.	2.26081e-22
NZ_CP011304.1\|WP_046662033.1\|2104909_2107663_-\|class-I-SAM-dependent-DNA-methyltransferase	gnl\|CDD\|223934	COG1002, COG1002, Type II restriction enzyme, methylase subunits [Defense mechanisms].	1.15601e-18
NZ_CP011304.1\|WP_046662020.1\|2085598_2085988_+\|AbrB-family-transcriptional-regulator	gnl\|CDD\|372980	pfam14250, AbrB-like, AbrB-like transcriptional regulator. This family of DNA-binding proteins is likely to act as a transcriptional regulator. This family does not include E.coli AbrB, which belongs to pfam05145.	1.82818e-42
NZ_CP011304.1\|WP_002783777.1\|2084854_2085298_-\|RrF2-family-transcriptional-regulator	gnl\|CDD\|273242	TIGR00738, Putative_HTH-type_transcriptional_regulator, Rrf2 family protein. This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency. [Unknown function, General].	6.18556e-46

>NZ_CP011304.1|WP_046662026.1|2094629_2096336_+|potassium-channel-protein
MKPQIIVCGLGRTGYKIFCLLKQQSAAVAAISDRQMVCEYQSDIIIGDPCSPQTLLQAGLPDAETLVLAIDNDALNLEILTRARIINPKIRIVNRLFNETLGERLDQTLPAHVSMSVASLAAPIFSFAALGNKAIGQLQLFDRLWPIQEIIIEENHPWWGLPLYELWDDPARMLIYYLPAHDEIDLVSAVLLGKKLQTGDHLIIGNKPTIKAKQRFKLQKWLRNLLNLRPYQHYVQPVILVTLSLLGMISLATITYLSVNQKISLVDSLYFSVGMITGAGGNEKVAESTPDSIKIFTVVMMIVGAGVIGICYALLNDFILGSRFKQFWDATRIPVRNHHIICGLGGIGTRIVRQLHEQGCEVVVIESDPNNRFLHSVRSWGIPVIIEDARLVATLETANINNAESLIVVTYEDMINVEIALTAKAIAPKINLVLRCSQEQFGRSIQEVFDFDTVLCPRDLATYSFAAAALGGRILGNGMTDDLLWVALATLITPNHPFMGQIIKEAAMNADFVPLYLEKQGQTIHGWQLLEITLDQGDILYLTMPAMRLQQVWQNTSLTIPQSFPDLK
>NZ_CP011304.1|WP_046662025.1|2093540_2094479_-|DUF4351-domain-containing-protein
MTRFLWDKFSKDYLETFLASSGDVKTSLDVTAETQEIDVYFRPTSPEIPPELGLLGKLAQTPCLLEPYRNPVTIEGILACLSKLLTVREQLQREAHRHQQPLLAENIPRLWILTPTASQRIITAFSALNHPDWGEGIYFLPPALTTAIIVLHQLPETPETLWLRLLGRGGTRSRAIDELEALSSNHPFKSASLKLLYNLSRNLQALPKRTQEERKFIMRLAPLYEQDREKAIQQGEAIGLQKGRIEGIQQGEAIGLQKGEANLVLRLLNRRFGELPPHITETIQKLSVEKLEDLGEALLDFETQADLINWLN
>NZ_CP011304.1|WP_046662024.1|2092588_2093458_-|DUF4351-domain-containing-protein
MKDYLETFLSSSGDVKTSLDVTAETQEINVYFRPTSPKIPPELGLLGRLAQTPCLLEPYRNPVTIEGILACLSKLLTVREQLQREAHRHQQPLLAENIPRLWILTPTASQRIITAFSALNHPDWGEGIYFLAPALTTAIIVLHQLPETPETLWLRLLGRGGTRSRAIDELEALSSNHPFKSASLKLLYNLSRNLQALPKRTQEERKFIMRLAPLYEQDREKAIQLGEAIGLQKEASKLVLRQLKRRFGELPPHITETIQKLSVEKLEDLGEALLDFESQADLINWLNQA
>NZ_CP011304.1|WP_046662023.1|2090231_2092310_-|glycogen-debranching-protein-GlgX
MTLKTDHGKSHPVGATVLADGVNFSLFSKYATAIELLLFDDANSPVPSRTILLTPQTNRTFFYWHIFVHGIGVGQVYAYRVYGPDNPAQGHRFDPDKVVLDPYAKAIVGAEIYDRQAASEKGDNCHRALRGLVVDTGCYDWEDDEPLRTPYSASFIYEMHVGGFTRNPNSGVSEEKRGTFAGLIEKIPYLKNLGITAVELLPIHYFDPAAAMPGLTNYWGYSTIGFFAPHAGYSSDRSPLGPLNEFRDLVKALHKAGIEVILDVVFNHTAEGDEIGPTLSLKGIDNRTYYILDAVDKSLYSNYTGCGNTLKGSHPIVGKMILDCLRYWVSEMHVDGFRFDLAAVLSRNVDGEPILQKGYNMIWAIESDPVLAGTKLIAEAWDAAGLYSVGQFVEFADWFSEWNGPFRDDVRAFVRGDTGIVRKLAARILGSPDIYHRPDNDVNRSINFVTCHDGFTLNDLVSYDEKHNEANGEKNRDGCNDNFSWNCGIEGETNNEAIKTLRLQQIKNLLTILFISQGTPMLLMGDEVRRTQKGNNNAYCQDNQLSWFDWSAVEQEFDLWCFVRRLIDFNKKLALFRQEKLLEVTYTSLEPHLSWHGVQLSKPDWSEDSRSLAFSLRYPKANEYLHIMLNAYWESLNFQLPPLFPEEKWHRVIDTAGQLSEAACDLDAAAAIESETYRVQARSAVVLIVKPV
>NZ_CP011304.1|WP_046662022.1|2089354_2090116_-|DUF3887-domain-containing-protein
MMQLSLAKRVSILSLCLIGFTLPLTTFNVSPVQANLEPTAIAIGDPVREEKQARQLVQWLGTKQYDKVIAALSPQLKPLWTAEKLQKVWESQVIDHTGPFKRIVKSKLLDAINANLVIVTVEFEKITEDVVITFNRSGQVIAADFPEFRSISEIGAAFVKALVNKDYGLARGFLHPLLKAEVFPTRVQGAWENLLKRTGPVRRVVGTQVRKGADTDGVDLVLVTIQFEKLTDTLILVFDDQKQIVNVDFPLGN
>NZ_CP011304.1|WP_002802932.1|2088009_2089308_-|phosphopyruvate-hydratase
MLDKIEVPIEAIAAREILDSRGRPTIEAEVLLESGAMGLAQVPSGASTGSFEAHELRDDDPQRYGGKGVLKAVRNVHEKIVPVLEGMNAFDQASIDLAMIDRDGTANKRELGANAILAVSLATAKAAAADLGLPLYRYLGGPMANVLPVPMMNVINGGSHADNNVDFQEFMIFPIGADSFKEGLRWGAEVFAALGKALHERKLLTGVGDEGGYAPNLGSNQEALDILIESIERAGYKPGSQVALAMDVAASEFYKDGQYIYDGSSHSPAEMVDFLASLVDRYPIISIEDGLHEEDWDNWKLLTDKLGARIQLVGDDLMVTNPIRLQRAIDLGIANSILIKLNQIGSLTETLQTIALATRHGYRSVISHRSGETEDTTIADLAVATNAGQIKTGSLSRSERVAKYNRLLRIEEELGDRAVYAPKVGLGPKFLA
>NZ_CP011304.1|WP_080949740.1|2086660_2087410_-|SIMPL-domain-containing-protein
MKDSSIFQRFPQVFAGLSMLSIALVLSSWIAARSFLEVKRAGDVFVVTGSAKRAITSDYLLWRLSVSSQQPSAQDAYRDLIRQTERIRAYLKEKQVPEDAITTNAIETMPIPEVTANGQETGQILAYRLTQRFEIRASDVARYTELSRQVTELIEEGISLVSEPPQYLYTQLDQLRVEMVAAATKDARARAEAIASSTGSRVGRVRDAKTGVFQITSRNSTDVSDSGIYDTSSIDKDITAVVSITFGID
>NZ_CP011304.1|WP_046662020.1|2085598_2085988_+|AbrB-family-transcriptional-regulator
MNKTTNPEPLTGLELIEKVKQLGNLSKEEKARECGYYTMTKNGIERVNMMKFLNALIDAEGIDLDSSANGQGRGGRSASYRISVQSNNNLLIGSAYTKKMGLKPGDEFEITLGRKHIHLKQVGASDDDE
>NZ_CP011304.1|WP_002783777.1|2084854_2085298_-|RrF2-family-transcriptional-regulator
MKLTTRGHYSVKALLDLSLQPRGTPVSVKSIALRQDIPAAYLEKLLIEMRRAGLVRSFRGAQGGYQLARPANRISLGQILEAVGETIEPLSGYHPRDEQAEDWVTFTIWKHLHEKLKEALGKITLADLYYDARSWIAARGEETSFIV
>NZ_CP011304.1|WP_080949737.1|2084433_2084907_-|GFA-family-protein
MRVAGSPLGERKPALLFSSLEVMTATTQAKIYGGGCHCGAIRFQVAIEHNQGLDCNCSICQKKGFLHLIVPSAQFTLLSGEDFLSTYTFNTHTAQHYFCRVCGIHPFYRPRSHPDAIDINLRCLDGNVLGDFQIQFFDGANWEDNIEKIRDIDGKRE
>NZ_CP011304.1|WP_046662027.1|2096704_2097316_-|Uma2-family-endonuclease
MIIAQEKPTIATVTKTPVTLEAYRAIAENSQERYEYCHGEMILMPGGTATHSAIAINISVFLGFLLRDRDFRLYNSDLRLWIPEYNCGTYTDLMVVNHEPEFNGDRKDEILNPLFIVEVLSPATEADDRGDKFRKYRSLPSFCEYLLVSQTEPYIEQYFRLAQSDRWQLQTYDQLSQIIPLESLNVELPLLEIYRRVSFAAAS
>NZ_CP011304.1|WP_002740011.1|2097546_2097753_+|hypothetical-protein
MKSEYDLANMKSRPNPFAQQLKRQVTLPLRIDVIDFFEKKAKEKGISYQELIDLYLQDCVTNDREISF
>NZ_CP011304.1|WP_046662028.1|2097834_2098044_+|hypothetical-protein
MSQASIQCLSDENGETIAAVVPIDLWREIESERETAYLLSSEVMKERLLTAKSRQGGMKLEEVCEKLGI
>NZ_CP011304.1|WP_002757316.1|2098151_2098718_+|nicotinate-nucleotide-adenylyltransferase
MLKIALFGTSADPPTAGHQAILKWLSEQYDIVAVWAADNPFKNHQTSLEHRLRMLNLLIRDIQPPRDNIQLRRELSDRRSLISVEKAQTIWGEQEEYTLVIGSDLAGQIRHWYRSQELLEKVKILVIPRPGYPINQDDIEQLQTLGGDCLIADVFAPAVSSTDYREKGDKQAVPAPIKDYIEGQKLYA
>NZ_CP011304.1|WP_046662029.1|2098714_2099443_+|NUDIX-hydrolase
MKPPKTLANKSLADFKVGVDNVIFSVDTQLNRLLVLLIKRREEPFSNYWSLPGTLVRNGESLETAAYRILAEKISVNNLYLEQLYTFGSPEGDSPAASESFGKRYLSVSYFALVRFEEAKLITERDHNITWYMIDKVPDLAFNHGQILEYGWRRLRNKVEYSPVAFEVLPELFTLNDLYQFYETILGKNFSDYSNFRNRLLKLGFLKDMGLKVSRGAGRPASLYRFDEKAFAPFKDQPLVFV
>NZ_CP011304.1|WP_046662030.1|2099455_2101114_+|NAD+-synthase
MRIAIAQLNPIVGDIEGNAQRILEAAQTAFNQGAELLLTPELSLCGYPPRDLLLNLGFVEKMSRQLQLLSQQLPEKLAVLVGFVEKNPSATVRGEKPLFNSIALLKSQEIKQIFTKRLLPTYDVFDEDRYFASGKESQYFQLTENNVKIGVTICEDVWNDEQFWGQRQYAVNPIADLANLGVDLIVNLSASPYSVGKQKLRESLLSHSATRYNLPIVYVNQVGGNDDLIFDGDSVAFNRQGEVIYRAQAFTSSLELIEFNQDLLPAVIHPLPVDEDEEIYRALVLGVRDYVQKCGFKRVIFGLSGGIDSSLVAAIASDALGKENVLAVMMPSPYSSDHSISDAVALVNNLGIKSEKLAIQEIMTAYDQLLDGLFAGTDFGIAEENLQSRIRGNLLMALSNKFGHLLLSTGNKSEMAVGYCTLYGDMNGGLAVIADVPKTRVYSLCRWLNRHGEIIPLNVINKAPSAELKPNQKDQDSLPPYEILDAILALLIDRHQSAEQIIAAGFEAEIVQKVIKLVKNAEFKRKQAPPVLKISDRAFGTGWRMPIASRWG
>NZ_CP011304.1|WP_046662031.1|2101490_2102504_-|folate-binding-protein-YgfZ
MKADLETIKAEYAANFLKDYHNDPQSLASQTILIDRSDWGLLELKGQDRLRFLHNQTSNAIDRLKPGQGCETIFLNSTGRTLDFVTVYAGDDSLLILVSPQRRQFLLELIDRYIFPFDKVEISDLTDNFGIVTLIGTESGQYLQKIAIPEQILTGVQHSHYLLSQPALRVAVGTGLDLPGYTLIVAATEAGPLWENLIKNGVTPADEQVWEYLRIHQGRPAVDRELTEDYNPLEAGLWRAIVFDKGCYIGQETIARLNTYKGVKQRLWGIKLSQPVPSNTPIILEAQKVGLLTSVLEDFGLGYVKTKAGGEGLKVQIGEATGELIPLPFLSHEYPFQ
>NZ_CP011304.1|WP_002802888.1|2102500_2102869_-|hypothetical-protein
MNPKFKDITAWEQAQLLMQPAFIRVLDNLRKQLENSLWKGTYTEIQDPYPSYLLCLTYLDRSVTVNIWELCFQVCFLDYPTDEGESVTIDTSLLDPTGELDWQSLETKTERIIKQLFANLPP
>NZ_CP011304.1|WP_046662032.1|2103150_2104185_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MTKVRVAINGFGRIGRLVFRAGIQNPDFEFVGINDLVPSDNIAYLLKYDSTHGRFQGTVEAKEDGIVVDGKFIPCYSIKDPAQLPWGATGADYVVESTGLFTTAEGAGKHLEAGAKRVVISAPTKDPDKIRTIVLGVNDNEYDPAKDMIVSNASCTTNCLAPITKVINDNFGLAEGLMTTVHSMTATQPTVDGPSKKDWRGGRGAGQNIIPSSTGAAKAVTLVIPSLKGKLTGMAFRVPTPNVSAVDLTFKTEKATSYEEICAAMKAASEGPMKGILGYTDEEVVSSDFITDPRSSIFDAKAGIQLNANFFKVVSWYDNEWGYSCRMLDLMKMMAAKEATLVTA
>NZ_CP011304.1|WP_046662033.1|2104909_2107663_-|class-I-SAM-dependent-DNA-methyltransferase
MPLSWNEIKNRAIAFQKEWQGETSEKAESQSFWNEFFHVFGISRRRVASFEQPIKKADNKQGFIDLLWKGTILVEHKSKGKDLEKAPQQAKDYFPNLKEHELPRYILVSDFQRFKLYDLDSGNQWEFELSNFVDNVHLFDFIAGYEKRVYKDEDSVNIQAAELMGKLHDCLKEIGYMGHDLEVYLVRLLFCLFADDTGIFNQGIFWEYIDIHTKEDGSDLAMHIASIFQVLNTPEEKRLKNIDENLTQFPYINGKLFEESLPLAAFDSKMRVMLLEACAFDWGKISPAIFGSMFQAVMNPKERRNLGAHYTSEKNIQKVIKPLFLDDLHREFEKIKGHRNKLLEFHKKIANLYFLDPACGCGNFLIITYRELRDLEILVLQELDKTGQLVTDISAIIQVDVNQFAGIEYDEFAVRVAEVAMGLIDHQMNIKVSNTFGQYFVRLPLKKAAKIVNGNALRIDWEEVISKEKLNFILGNPPFVGKQLQNADQKADMNHVLGDIKGAGVLDYVTAWYIKAAEFIQNSLIRCALVSTNSISQGEQVGIIWQELYQKYKIKIHFAHRTFSWSNEAKGNAAVHCVIIGFGLEDIDNKRIFDYADIKGEPTERKVKNINPYLVEGNDLVILSRRKTISSVPEINFGSMPNDGGHLILLQSEKEELVKNEPDADKWIRRYTGAQEFINGYSRYCLWLADIQPQELKKSKEIYRRVEEVRKVRSESNRKTTQELSKFPTLFGENRQPDTNYLLVPRVSSERRKYIPIGFFSPDYIASDSCLFVANADLSLFGILTSEMHMAWVKYVCGRLKSDYRYSNTIVYNNFPFPENITDKQKQTVETCAQAVLDTRAKYPDSSLADLYDHLTMPPDLLKAHQKLDKAVDLCYRPQLFTSELNRIEYLFELYEKLTAPLLPTSKQKATRRKNYQ

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Crispr_ID: NZ_CP011304_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011304_14

2271790-2271886

TypeV

Consensus_repeat	Method
TCAGTAAACAGTAAACAGTAATCAG	CRISPRCasFinder

1 spacers

cas14k

The CRISPR arrays of NZ_CP011304_14

>merge|NZ_CP011304|14|2271790-2271886|CRISPRCasFinder
TCAGTAAACAGTAAACAGTAATCAGTAAACAGTAAACAGTAATCAGTGAGACACTGTTGATGGGAGTTTTTTTCAGTGGTCAGTAAACAGTAAACAG

>NZ_CP011304|14|14|2271790-2271886|CRISPRCasFinder
TCAGTAAACAGTAAACAGTAATCAG	TAAACAGTAAACAGTAATCAGTGAGACACTGTTGATGGGAGTTTTTT
TCAGTGGTCAGTAAACAGTAAACAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011304.1\|WP_046662144.1\|2275437_2276214_-\|sterol-desaturase-family-protein	unknown	unknown	gnl\|CDD\|225546
NZ_CP011304.1\|WP_149039028.1\|2250858_2251638_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046663713.1\|2283119_2283713_-\|IS607-family-transposase	unknown	unknown	gnl\|CDD\|239738
NZ_CP011304.1\|WP_046662137.1\|2260012_2263477_-\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|227226
NZ_CP011304.1\|WP_046662134.1\|2254434_2255646_-\|FAD-dependent-hydroxylase	unknown	unknown	gnl\|CDD\|236001
NZ_CP011304.1\|WP_002752242.1\|2275083_2275266_-\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|225777
NZ_CP011304.1\|WP_158524797.1\|2254118_2254286_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046662146.1\|2278554_2280123_-\|B12-binding-domain-containing-radical-SAM-protein	unknown	unknown	gnl\|CDD\|379101
NZ_CP011304.1\|WP_046662133.1\|2251987_2253910_-\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224423
NZ_CP011304.1\|WP_046662139.1\|2265974_2270579_-\|glutamate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236968
NZ_CP011304.1\|WP_046662136.1\|2257549_2259376_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|366703
NZ_CP011304.1\|WP_046662140.1\|2270879_2271767_-\|CoA-binding-protein	unknown	unknown	gnl\|CDD\|223152
NZ_CP011304.1\|WP_046662148.1\|2281909_2283148_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	cas14k	-	gnl\|CDD\|223747
NZ_CP011304.1\|WP_046662143.1\|2274314_2274791_-\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|283241
NZ_CP011304.1\|WP_046662138.1\|2263718_2265905_-\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|365904
NZ_CP011304.1\|WP_046662142.1\|2273091_2273955_-\|cyanophycinase	unknown	unknown	gnl\|CDD\|131124
NZ_CP011304.1\|WP_046662141.1\|2272491_2272908_-\|YggT-family-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046662145.1\|2276215_2278525_-\|NACHT-domain-containing-NTPase	unknown	unknown	gnl\|CDD\|227922
NZ_CP011304.1\|WP_046662135.1\|2255854_2256697_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|215135
NZ_CP011304.1\|WP_103672709.1\|2274114_2274264_-\|lmo0937-family-membrane-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP011304.1\|WP_046662144.1\|2275437_2276214_-\|sterol-desaturase-family-protein	gnl\|CDD\|225546	COG3000, ERG3, Sterol desaturase [Lipid metabolism].	2.55098e-35
NZ_CP011304.1\|WP_002752242.1\|2275083_2275266_-\|CsbD-family-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	4.92518e-08
NZ_CP011304.1\|WP_046663713.1\|2283119_2283713_-\|IS607-family-transposase	gnl\|CDD\|239738	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subfamily is composed of proteins that catalyze the transposition of insertion sequence (IS) elements such as IS607 from Helicobacter and IS1535 from Mycobacterium, and similar proteins from other bacteria and several archaeal species. IS elements are DNA segments that move to new sites in prokaryotic and eukaryotic genomes causing insertion mutations and gene rearrangements.	1.627e-42
NZ_CP011304.1\|WP_046662137.1\|2260012_2263477_-\|N-6-DNA-methylase	gnl\|CDD\|227226	COG4889, COG4889, Predicted helicase [General function prediction only].	2.67676e-25
NZ_CP011304.1\|WP_046662134.1\|2254434_2255646_-\|FAD-dependent-hydroxylase	gnl\|CDD\|236001	PRK07364, PRK07364, FAD-dependent hydroxylase.	0
NZ_CP011304.1\|WP_046662146.1\|2278554_2280123_-\|B12-binding-domain-containing-radical-SAM-protein	gnl\|CDD\|379101	pfam13282, DUF4070, Domain of unknown function (DUF4070). This is a bacterial domain often found at the C-terminus of Radical_SAM methylases.	2.90741e-63
NZ_CP011304.1\|WP_046662133.1\|2251987_2253910_-\|S9-family-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	3.16425e-77
NZ_CP011304.1\|WP_046662139.1\|2265974_2270579_-\|glutamate-synthase-large-subunit	gnl\|CDD\|236968	PRK11750, gltB, glutamate synthase subunit alpha; Provisional.	0
NZ_CP011304.1\|WP_046662136.1\|2257549_2259376_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.18468e-49
NZ_CP011304.1\|WP_046662140.1\|2270879_2271767_-\|CoA-binding-protein	gnl\|CDD\|223152	COG0074, SucD, Succinyl-CoA synthetase, alpha subunit [Energy production and conversion].	3.69623e-78
NZ_CP011304.1\|WP_046662148.1\|2281909_2283148_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.70413e-24
NZ_CP011304.1\|WP_046662143.1\|2274314_2274791_-\|CsbD-family-protein	gnl\|CDD\|283241	pfam05532, CsbD, CsbD-like. CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.	4.1615e-09
NZ_CP011304.1\|WP_046662138.1\|2263718_2265905_-\|DNA-cytosine-methyltransferase	gnl\|CDD\|365904	pfam00145, DNA_methylase, C-5 cytosine-specific DNA methylase.	3.24182e-95
NZ_CP011304.1\|WP_046662142.1\|2273091_2273955_-\|cyanophycinase	gnl\|CDD\|131124	TIGR02069, cyanophycinase, cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. [Energy metabolism, Other].	8.78936e-112
NZ_CP011304.1\|WP_046662145.1\|2276215_2278525_-\|NACHT-domain-containing-NTPase	gnl\|CDD\|227922	COG5635, COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms].	1.12422e-178
NZ_CP011304.1\|WP_046662135.1\|2255854_2256697_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|215135	PLN02244, PLN02244, tocopherol O-methyltransferase.	1.41513e-126

>NZ_CP011304.1|WP_046662140.1|2270879_2271767_-|CoA-binding-protein
MKWTDKDQIIMQGIDRPLGKYYAARLKAQGTCLVAGVASGHGGEIIAEIPVFDLVAEAVAEAGEIKTSLILVPPNQVLDAALEAIAAAITQLIIVTPGVPPLDLVELLKIASTTGTLILGPGSQGVIIPNYLWLGICEPSFYQSGTIGLITRGDRIGDEVAKTLTAAGYGESMAVNLGTDGIIGSNLSQWLQVFEEDENTEAILLVSQVGGKSEIEAAKYIASAIEKPVIAYLVGLNTAIETNFGDTETIISNQLSYSVAAKNTRKDSLRHFQEAGVTVVEKLADLPTSLAKVLS
>NZ_CP011304.1|WP_046662139.1|2265974_2270579_-|glutamate-synthase-large-subunit
MAQQNNLKTDNIHQIDPYWGPRWLVEERDACGVGFIADVRGSGSHQLIEQALLALGCLEHRGGCSADQDSGDGSGMMTAIPRDVLAPWFAENGLNMPESERLGVGMVFLPQADRERAEAKAHIEEIVNKYNIKILGWRAVPVHPQVLGRQARENQPYVEQILVTSPDLAGSQFDRLLYIARSEVGKQLADDFYFCSFSCRTIVYKGMVRGEILREFYLDLQNPAYSSQFAIYHRRFSTNTQPKWPLAQPMRLLGHNGEINTLLGNINWMSAREPALETQGWTHEELQSLTPIVNPANSDSYNLDSALELLVRTGRSPLEAAMILVPEAYNNQPDLQDYPEIIDFYEYYSGLQEPWDGPALLVFSDGGIVGACLDRNGLRPARYSITNNGYIVVSSEAGTIPLDETTIMEKGRLGPGQMLAVDLEKGEIKRNWQIKQEIARANPYGEWVKSQRTLIDKETAIDIPAPSHLLPLQTAFGYTAEDVDMIIVPMAEQGKEPTFCMGDDTPLAVLSSKPHLLYDYFKQRFAQVTNPPIDPLRESLVMSLTMYLGRRGNILKLGVDDAHLLKLDSPLLNNAELAKVKTSSYKTAELSTLYDLTTGPGGLETAIANLCAEAAKKVESGAEILILSDRTAPIDEKTSYIPPLLAVGAVHHHLIRSHLRLKASIVIDTAQCWSTHHFACLIGYGASAVCPYLALETIAQWWIEPKTQKLMENGKLEAISLEKALINYRKSVEAGLLKILSKMGISLLSSYHGAQIFEAIGLSADLVKLAFNGTTSRVGGLSIAEVAQEAIAFHSKAFPNLTAKKLENYGFVNYRPGGEYHMNSPEMAKALHKAVAAHSQGEGYDHYETYRQILQERPVTALRDLLEFNSDRASIPLEAVESIESILQRFCTGGMSLGALGREAHETLAIAMNRIGGKSNSGEGGEDPIRYTSLSDVDAEGHSVTMPHLNGLKNGDTANSAIKQIASGRFGVTPEYLMSGKQLEIKMAQGAKPGEGGQLPGKKVSPYIAMLRRSKPGVTLISPPPHHDIYSIEDLAQLIYDLHQINPRAKVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRMLMENQLRHRVILRADGGLKTGWDILMAAVMGAEEFGFGSISMIAEGCIMARVCHTNNCPVGVATQQERLRARFPGIPAHVVNFFTLVAEETRQLLAKLGYHSLNEVIGRADLLKVRSDARLTKTESLNLDCLLNLPDGRGDRSWLQHEEVHSNGAVLDDDILADSEIKQAIEQQGTVSKTYRIVNTDRSVGARIAGVIAQKYGNDGFEGEIKLNFQGAAGQSFGAFNLPGVNLHLEGEANDYVGKGIYGGEIVILPPQNANYQPEDNAIIGNTCLYGATGGVLYANGRAGERFAVRNSTAKAVIEGAGDHLCEYMTGGVIVVLGSVGRNVGAGMTGGLAYILDPSLPEKLNPEIVKIQRVATAAGAEQLKSLIEAHVERTNSPKGKLILANWDSYLGQFWQVVPPSEADSPEAQISAEKTLTSV
>NZ_CP011304.1|WP_046662138.1|2263718_2265905_-|DNA-cytosine-methyltransferase
MTNEKLRFIDLFAGIGGFRLAFESVGYDCVYSCEIDENCRKVYFNNFQEIPDQDIRKIAIHDLPDFEVLTAGFPCQPFSISGKRAGFRDTRGTLFFHICEIVELKKPKIILLENVKHLIHLDKGKNLDIILHSLEELGYLVDYKLLNAKDFGVPQNRERIIIIATQNKKFNFNSLKYTSPIPKLRDFLSPQGNFEYLDKKEYTLIDNPTLQPSGLIFVGYRNKTIWKKGIRPNTEHLSRVHHQPNRIYSIDGVHPTIPSQETSGRFFIYIPEQDQVRKLTIQECYRLMKFPDSFQIHPNLAESYKQVGNSVCIPMIQELAIAIKKHIFENNSRVSLKEFSFSRQNIQLEIIGLDFMNHKEKLLDIYDQSLNLDDRQPLLPQPYQNYIQQIATNCSKKKGVYTVLITLLVHKILYPNQDIRYHQTNLPGGFSGRTIDTQYITPTLKQLGLPAMAESGWLTRSLEQPFPYTLDYQGKISNQKTKDAFLGLIDFIETNPQQAEVILTLLLHQVNQIIQTQKIKILKIDNPEPFDINTLSSCLENHFSFNYQTRGASKLPVLALYAIYQRLIIEVERYKSCTLKPLGSHTASDLTSGSAGDIEIFDKNKQLVEVIEIKHGKYIDLQILRIAKDKIIKFNPRRYYILSSFDVKPTEVELIMSEIQTIKNNHGCQIITNGIIPTIKYYLRLISSPEEFVNSYSHLIEIDSELQTIHKLKWNEILSNLISPIEQI
>NZ_CP011304.1|WP_046662137.1|2260012_2263477_-|N-6-DNA-methylase
MNPLVNYFRNLQEIHSSQAAVKETSYYGTLETLLNEIGKTLKPRVRCIINLRNQGAGLPDGGLFNVDQFPKNQELEPFTAIFPERGAIEIKGTKEDIKKIAASEQVQKYWQKYGQVLVSNYRDFLLIGRNSQGQPVELEAYSLAPSEAEFWLKTSNPSKFAAEHGDSLLEYLKRVLLQAAPITSPADVAWFLASYARDAKARLEHHSDLPALANIRQALENALGIKFEREQGNKFFRSTLVQTLFYGLFSAWVLWHKQNLNREDKEDKFDWKSAAHHLHVPMLAILFEQIAAPSKLKSLGLVEVLNWTGAALNRVRREEFFRQFDEGQAVQYFYEPFLQAFDPDLRKELGVWYTPPEIVRYMVARVDRVLREELNIEDGLANPDVYILDPCCGTGAYLVEVLRYITDTLQENGAGALAMALVKKAAIERIFGFEILTAPFVVAHLQLGLFLQSLGVPLIEDSERVGIYLTNALTGWQPPDEESKQKIQQLQLSFPELNKEREAADEVKRGKPILVILGNPPYNAFAGTSPAEEAGLVELYKQGLISDWGIKKFNLDELYVRFFRLAERCISENTGKGVVCYISNFSYLGDPSFVVMRQRFLQEFDRLWFDCLNGDSRETGKLTPEGNPDPSVFSTQYNKEGIRVGTTIGLMVRKEVRNKNVDVYFRHFWGVAKREQLLDSLNNQDFDSLYQVSNPEQSNRYSFRPSDVSSHYLAWPKLTDLSDEAPITGYKENRGYSFIDSDKTILSERISKYFDQNVSWEELASLNTGLTKDAARFDAKKARDKVLKLREKFNPQMLLPYLLRPYEVKWCYYTQIRPLWNESRPSLFIHQFQGNSFLVSRPAGVASPEGIPFYFTNCLGDFDFIRGHAYHFPIRLRQNSEKVKTEDNTQGKLFDSSNLNIPSIKANLSEKSRQYLNELGINNLDENIENASLIWLHSLAIGYSPLYLGENADGIRQDFPRIPLPNSQELLIKSAELGQVIASLLDTEKPVIGVTKKPTPALQKIALISCTDGGNLNPDKGDLIINVGWGHGGKNGVTMPGKGKAIARQYTTAEMSVISPEMRKLLGTTTYDIYLNDRAYWQNIPVRVWEYTIGGYQVIKKWLSYREEKLLGRGLTIAEVQEVSEMTRRITAIILLESDLDDNYQNIKTAVYSF
>NZ_CP011304.1|WP_046662136.1|2257549_2259376_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MTSATPEQNYTAESNRVRYSVALLGLALSLGVPSILNSTSESAQAANSVPLEWELIDLSPKAKDGGKELKEPQIIPSQALATVKFIATSVVEHQVKPGESLWSLADTYQTTPTAIATRNNLSPHSDLIIGQTLKIPTPEQLPPAAPAATPEQLDSSSASLRQTRQRLQESLAALRTEETPHQSHSGETVIVTETTALVPDNSPTSVEIPVIAPEESPQPTSQVIPIPVPTPESDRPIATIPLNPPLTSRPEIPSVALRNPAPVTEIPAVPNPRVIVPPENQVYRVRPGDTLNTIARALGITPAELARENGIDNPNRIKVNQTLVVPDRSANARVNQNLTPLVGERPRLSFNPSNRQNPPAETVTTETEEFPENITGSYRERLRQEVANLRETNLSETQKSIAIPVDNPPETVEDRQITANPQWTALRSRSNQSNPPQIIGSAPTNVEEYNDRLRIPVGETVEPSLPPLANPDEHLPNPAPIFTGFIWPTRGVLTSGFGWRWGRPHRGIDIAGPVGTPVVAAAAGEVISSGWNSGGYGNLVKLRHPDGSVTLYAHNSRLLVRRGQTVEQGEPIAQMGSTGFSTGPHLHFEVHPSGQGAVNPMAFLPGRR
>NZ_CP011304.1|WP_046662135.1|2255854_2256697_+|methyltransferase-domain-containing-protein
MELYQRIADFYDSSSGLWERIWGEHMHHGYYGRGGKIKLDRRQAQIDLIEELLTWGAVTGANQILDVGCGIGGSSLYLAEKFHSQAVGITLSPVQAARASQRAQEFNLEEQVSFCVADALKTPFPDDNFDLVWSLESGEHMPDKRQFLRECYRVLQPGGTFLMATWCHRPTTSLAGNLTEGEIKLLNEIYQVYCLPYVISLPEYADIAREVGFRDLKTDDWSLSVAAFWDVVIDSALTTDAIAGLLASGYTTIQGALSLGLMRRGYESGLIRFGLLQGKK
>NZ_CP011304.1|WP_046662134.1|2254434_2255646_-|FAD-dependent-hydroxylase
MLGRDSYDLIIVGGGIVGTTLAVALKNTGLNIAMIEERPLEVAASRRQAYALSLMSSRIFTGLGIWDKISPSIGKFRHIRLSDADYPIFVPFVVDELKTDYLGYVGEHQVILTALHKASQDCDRIDWLSPAKVLEVEYGAETATVTLEEAGQTRKITTKLVIGADGARSAIRQGAQIKTKGWKYWQSCVAFTIKHQLDRNDTAFERFWPTGPMGILPLQGNRCQIVWTNPHGEAKKLQEMPEGEFLDKLEAYTGGLLGKLELVSSRALFPVQLMQSDTYVKPRLALIGDAAHCCHPVGGQGLNLGIRDAAALAQVLKEAVEKQEDIGALSTLKSYEKWRRSENLAILGFTDFLDRLFSNNWPPIVVIRRLGLAMMRGFPPLKLFALQLMTGLKGRIPQLARTC
>NZ_CP011304.1|WP_158524797.1|2254118_2254286_+|hypothetical-protein
MNLNHHSDNRGILQAFFFFLSPPSPELVAGYLARVCGKKLFVGTGCGVWGVGCGV
>NZ_CP011304.1|WP_046662133.1|2251987_2253910_-|S9-family-peptidase
MSHQISAYGSWKSPITSDLIVAASISLGGVTLDGEDIYWLEGRPQEKGRNVLVKLNPDGTTTEITPAPFNVRTRVHEYGGGSYLIVAGIIYFCNFADQRIYRQTAESLPQPLTPENSCRYADLILDEFRNRLICVCEDHSQKDREPVNSIVSIDVDTGEIETLVSGDDFYTSPRLTADGSRLAWISWNHPNMPWDSSFLWVADINNLYLSNIRVIAGGENESVCEPRWSADQQLYFTSDRNDFWNFYCFKYDEQIEQVLEPIEAEFAYPHWVFGLSNYGFAGESQIICSYTKNGRWYLGSIDTVNREFREIITADTNISSLQVSDNKIVFIGGSFREVTAVVSMDLATGTREILKSSSNLTISSDYFSIPEMLAFPTSQGLTAYAWYYPPKNPDYTAPNGELPPLLVKSHGGPTAAATSSLSLRVQYWTSRGFGYLDVNYGGSTGYGRQYRQRLQGNWGIVDVEDCINGAKYLVNQGLVDGERLAISGGSAGGYTTLAALTFHDTFKAGASYYGVSDLEVLATDTHKFESRYLDKLVGRYPEEKEIYYQRSPIHFTAQLSCPVIFFQGLEDRVVPPNQAEMMVEALKAKGLPVAYVPFAGEQHGFRQAESIKRALDAEFYFYSRLFGFTPADNLEPVEIK
>NZ_CP011304.1|WP_149039028.1|2250858_2251638_+|hypothetical-protein
MQDTQILFLLTAIVLILGVPFLILKRVSLSQNQEKYQTFCFVYYSLFIWAASSYSIIRPGNGFTHYLLFLIIPSGFLIGVFIGELAQVLQVSKLTRSNLNFSLLTGVIFITVASSFLQFATTITSDNVYLNNRRRFARNYLSPIAKTILKYASPGESMAVWGWASELYVDTGLVPAIRDSVSLWQIKPGSLQEYFLQRYAEDFINSNAKLFVDAVAPRMFFFTDRQTQGHEVFPEIARVINENYRLVDEVQGVRIYLKK
>NZ_CP011304.1|WP_046662141.1|2272491_2272908_-|YggT-family-protein
MNHDRDDETNLERRQELLHDEEAFRLDQEEKRLRSARRSNTLNWIINSIFVLAGIVQIPLVMRFLLRLFGANPQNQFAQLINHLSAPFIEPFSTLFISPASSGGANIFDVNIVIAIIAYALLSYTLHGYNLHFFLKSL
>NZ_CP011304.1|WP_046662142.1|2273091_2273955_-|cyanophycinase
MESTKERGQLIIIGGAEDKEGDCQILREFVRCAGGTKAKIAVLTAATSEPRSAGEAYTRVFERLGVEDVRVLDTIHREDADDPENLKIIEEATGAFFTGGDQALIIEHIKGTQLDTLLHQRNREGMVVGGTSAGAAIMPDLMIIEGDSETNPRMDAIDMGPGMGFLHSVVIDQHFAQRGRLGRLISALLQQPANLGFGIDEDTAVIVDGDEFKVVGRGAITVVDESEATYDNLDELLKDEAMAVCGVRLHILPQGFRFNLKTRKPVFSRSIELKDSNPKKEAEVERE
>NZ_CP011304.1|WP_103672709.1|2274114_2274264_-|lmo0937-family-membrane-protein
MFDLVWTAVVILFILWLLGFSVNIGGGLIHLLLVLVLIGVVYNLFMRRR
>NZ_CP011304.1|WP_046662143.1|2274314_2274791_-|CsbD-family-protein
MSLQQIRRFFVTIILTIMLAITIAFDFGTTNSWAATLPTQPQTQIASMNRAKAVTKNIEGKAQEAIGNMTGDPKDQMMGKAKQVESQARNAAEDIKDQMKLKGRAKAVTKNIEGKAQEAIGKATGNRQDQVAGKAKQVESQVRNAVEDVKDQVQDILN
>NZ_CP011304.1|WP_002752242.1|2275083_2275266_-|CsbD-family-protein
MSLKDRTEATAKNIEGKVQEAVGDLTGDPKAQAEGKEKQAEAKVRHTIEDVKDEVKKIID
>NZ_CP011304.1|WP_046662144.1|2275437_2276214_-|sterol-desaturase-family-protein
MIDHSFGFYGFAFFGIILARYFLVAGGTYLFFYSPLSQSFVNHNLRHWSPSWRSIQQDITLSVLSAGVFALAAAFIITGYSWGITRLYSHPQQYGLCYLGVSYGAVLVLQDAYFYFTHRLFHHPSLFRWLHQGHHRSRYPTPWTSFAFDPLEAIVQSLFLVGIVFVLPLHFITLIAALTTMTIWAVLNHLGIDRLPSSFPHHWLGRWFIGPAHHSIHHRKYTVHYGLYFTFWDKLLGTQDPDYEQKFDERLTGKVDGV
>NZ_CP011304.1|WP_046662145.1|2276215_2278525_-|NACHT-domain-containing-NTPase
MVKRSLQASPSGIKQAKRAFALKGWTQENLAGEVNLKTRQPIWRFFTGKPVDRQVFLEICSILDLDWREIALAPPAEFPEPGELAKTNIDALVQEVRAQRLDTIQNQCGILQLLDISHPVSIDDIYVDVNILAEIASQQWVEIADWQNLGPAEFDRVGLGEVEQKQIPGMQAVETYSKLRVLGRPGVGKTTFLQHLAIQCNQGEFAANQVPIFILLREFAEESSPRGEFSLFNYIRQALLTSGISNPSVLETLLQAGRVLLLLDGMDEVLNQDITAVLREIRQFSEKYHRNRFVVTCRTAAQKLQIRGFTDVEIAPFTQAQISTFAQKWFVALSKTTAQAGQEQSAQFMEKLDLPENWQFRQLVVTPLFLHLACWVFQGQGKFPSKRAEFYKQGLDLLLGKWDEARGVERDQVYRGFLLPQKLKLLSQLAAVTFEQGQYFFEQRTIEQYIGDYLRNLPGATLEAEELQLESEAMLKAIEAQHGILTERARGIFSFSYLAFQEYFTARKIVASHNLQALEQALGGLVSHITDSHWREVFLLTAAMLRSADALVQLMKQQIDALVAQDSYLQEFLSWASQKSQQLPDETKVATARAFYLALAQSPHTADRFALASTLDQGMFLDAALENLLVEFAIDHSQDFAYVNACSEALNNILVMVLDAGFYKSLQQLRDQLPPPSQNLERLQHWWQKNYSAWVEQLRGAIANYRNIHHPWQFTTEQQQLLQRYYEANQLLIDCLNSNCEITAAIRQEIEATLLLPQKDLEDREWQGD
>NZ_CP011304.1|WP_046662146.1|2278554_2280123_-|B12-binding-domain-containing-radical-SAM-protein
MKALLLYPEFPQSFWSYDRFMEIAGLKATIPPLGIITVAALLPQNWEIRFYDRNVNPETEADWEWCELVILSAMLVQKPDFQALIQKAVQLGKKVAVGGPYPTSVPQDALDSGANYLILDEGELTVPLFLEAIAQGQSQGIFRSGDKPDVTLSPIPRFDLLQRDDYLMMAVQFSRGCPFNCEFCDIISLYGRKPRTKEPSQTLAELQTLYDLGWRGSLFIVDDNFIGNQRNVKRFLRDLIPWMKQHDYPFTFITEASVNLAEDDELLSLMAEAGFYSVFLGIETPDQDSLQVTRKLQNTRNPLVEACRKINAAGLLIYAGFILGFDGERSGAGERIQAFVEETSIPQPMLGILQSLPNTALWHRLQQEQRLVEGDSIHPTGDQNSLMNFIPTRPIAEIAREYVEGFWTLYEPSHYLRRCFQQCLGLGLQSKHKQTMQFPVGKGLRLITQLIWHQGIRRGNIRGQFWRQLWTIWQKKPQVLNLYLGLCAAGEHFWEYRALARERITQQLGYDPLEVSGRPNQN
>NZ_CP011304.1|WP_046662148.1|2281909_2283148_-|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MKLVQKHLIKFNHKNYSVIDKLGFLSKNLYNCAVYLNRQVFFSHQPFLTMTELHHALKMSPDYQALPAKVSQLVLKQVEKTFKSYQKAKEQYKKSPDKFTGEPKLPRYKDKEKGRNVLTYNYQAISKKALKQGLIKLSGTNLEFKTNLKEVLEVRIIPKLGAYCLEIVYEQPSSSSQEGERYAFIDLGLNNLAAVTSNIPEFQPTLVCGKALKSCNQKYNKTLAKLKSELPSLQKTSKRIQGLTLKRNCKVDYYLHTASKYIIDKLLAHQINLLVIGHNQGWKQNINIGDRNNQSFVNIPHSRLIEQLTYKANLVGIEVKTTNESYTSKCSFLDLESIQKQKSYLGKRIKRGLFRSSSGYFYGADINGSLNIGRKVVGEAAFSGNPIERFVVNPVRVKAYKANSRCNICVQN
>NZ_CP011304.1|WP_046663713.1|2283119_2283713_-|IS607-family-transposase
MKLSDYAKKKGISYDTAWRMWNRGQLQGERLPTGTIIIFEDDRSCGENKVAIYARVSSSENQSNLETQAKRLEAYCIAKGYQIVRVVKEVGSGVNDHRKLLLKLLEQTDYNLIVVEHKDRLSRVGFNYLKVLLNQTNRDIEVVNLAEERKDDLMEDFVSIITSFCARLYSLRRRNRKTECLIKCLEENDEISSKTSN

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Crispr_ID: NZ_CP011304_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011304_15

2769449-2769687

TypeIII

Consensus_repeat	Method
AGAAATTAATTGACTGGAAACA	PILER-CR

3 spacers

cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas14j

The CRISPR arrays of NZ_CP011304_15

>merge|NZ_CP011304|15|2769449-2769687|PILER-CR
AGAAATTAATTGACTGGAAACAAAAGGGTTCTCCCTCTTTCAAGTTTTCAACTGCCTGACTCTCTACTCAGTGGAGAAATTAATTGACTGGAAACAAAAGGGTTCTCCCTCTTTCAAGTTTTCAACTGCCTGACTCTCTACTCGCGCTTAGAAATTAATTGACTGGAAACATTTGTAGGGTTAATTCATGAATTAACCCTACTCTCCACTCGCGCTTAGAAATTAATTGACTGGAAACC

>NZ_CP011304|15|2|2769449-2769687|PILER-CR
AGAAATTAATTGACTGGAAACA	AAAGGGTTCTCCCTCTTTCAAGTTTTCAACTGCCTGACTCTCTACTCAGTGG
AGAAATTAATTGACTGGAAACA	AAAGGGTTCTCCCTCTTTCAAGTTTTCAACTGCCTGACTCTCTACTCGCGCTT
AGAAATTAATTGACTGGAAACA	TTTGTAGGGTTAATTCATGAATTAACCCTACTCTCCACTCGCGCTT
AGAAATTAATTGACTGGAAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011304.1\|WP_046662493.1\|2769721_2770339_-\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|131644
NZ_CP011304.1\|WP_002757875.1\|2757880_2758189_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046662490.1\|2763494_2764274_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NZ_CP011304.1\|WP_149039034.1\|2773083_2773437_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046662497.1\|2774205_2775225_+\|methyltransferase	unknown	unknown	gnl\|CDD\|366359
NZ_CP011304.1\|WP_046662500.1\|2777487_2778321_+\|photosystem-II-manganese-stabilizing-polypeptide	unknown	unknown	gnl\|CDD\|366770
NZ_CP011304.1\|WP_046662484.1\|2757256_2757718_-\|biphenyl-2,3-dioxygenase	unknown	unknown	gnl\|CDD\|259872
NZ_CP011304.1\|WP_046662491.1\|2764708_2765836_-\|CRISPR-associated-protein-Cmr3	cmr3gr5	cd09748_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NZ_CP011304.1\|WP_046662488.1\|2760765_2762709_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|187792
NZ_CP011304.1\|WP_046662487.1\|2760395_2760668_+\|LapA-family-protein	unknown	unknown	gnl\|CDD\|377648
NZ_CP011304.1\|WP_046662501.1\|2778988_2780089_-\|restriction-endonuclease-or-methylase	unknown	unknown	gnl\|CDD\|227091
NZ_CP011304.1\|WP_046662499.1\|2776769_2777114_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_071846466.1\|2771005_2771437_-\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|376616
NZ_CP011304.1\|WP_046662485.1\|2758674_2759517_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP011304.1\|WP_046662498.1\|2775267_2776701_-\|phosphoglucomutase/phosphomannomutase-family-protein	unknown	unknown	gnl\|CDD\|100093
NZ_CP011304.1\|WP_046662489.1\|2762772_2763162_-\|hypothetical-protein	cmr5gr11	cls000022_cmr5gr11_CAS-III-B	unknown
NZ_CP011304.1\|WP_046662486.1\|2759750_2760203_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046662492.1\|2765808_2768823_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|378863
NZ_CP011304.1\|WP_046662496.1\|2773609_2774035_-\|lysozyme-inhibitor-LprI-family-protein	unknown	unknown	gnl\|CDD\|226278
NZ_CP011304.1\|WP_046662494.1\|2771487_2772747_+\|transposase	cas14j	-	gnl\|CDD\|223747

Protein	Function_ID	Function_description	E-value
NZ_CP011304.1\|WP_046662493.1\|2769721_2770339_-\|PEP-CTERM-sorting-domain-containing-protein	gnl\|CDD\|131644	TIGR02595, conserved_hypothetical_protein, PEP-CTERM protein-sorting domain. This model describes a 25-residue domain that includes a near-invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In nearly every case, this motif is found within nine residues, and usually within five residues, of the extreme C-terminus of the protein. Proteins with this motif typically have signal sequences at the N-terminus. This region appears many times per genome or not at all, and co-occurs in genomes with a proposed protein-sorting integral membrane protein we designate exosortase (see TIGR02602). PEP-CTERM proteins frequently are poorly conserved, Ser/Thr-rich proteins and may become extensively modified proteinaceous constituents of extracellular material in bacterial biofilms. [Cell envelope, Surface structures].	0.00477831
NZ_CP011304.1\|WP_046662490.1\|2763494_2764274_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	5.34183e-32
NZ_CP011304.1\|WP_046662496.1\|2773609_2774035_-\|lysozyme-inhibitor-LprI-family-protein	gnl\|CDD\|226278	COG3755, COG3755, Uncharacterized protein conserved in bacteria [Function unknown].	1.72055e-30
NZ_CP011304.1\|WP_046662497.1\|2774205_2775225_+\|methyltransferase	gnl\|CDD\|366359	pfam00891, Methyltransf_2, O-methyltransferase. This family includes a range of O-methyltransferases. These enzymes utilize S-adenosyl methionine.	1.30406e-51
NZ_CP011304.1\|WP_046662500.1\|2777487_2778321_+\|photosystem-II-manganese-stabilizing-polypeptide	gnl\|CDD\|366770	pfam01716, MSP, Manganese-stabilizing protein / photosystem II polypeptide. This family consists of the 33 KDa photosystem II polypeptide from the oxygen evolving complex (OEC) of plants and cyanobacteria. The protein is also known as the manganese-stabilizing protein as it is associated with the manganese complex of the OEC and may provide the ligands for the complex.	5.67742e-155
NZ_CP011304.1\|WP_046662484.1\|2757256_2757718_-\|biphenyl-2,3-dioxygenase	gnl\|CDD\|259872	cd04210, Cupredoxin_like_1, Uncharacterized Cupredoxin-like subfamily. Cupredoxins contain type I copper centers and are involved in inter-molecular electron transfer reactions. Cupredoxins are blue copper proteins because they have an intense blue color due to the presence of a mononuclear type 1 (T1) copper site. Structurally, the cupredoxin-like fold consists of a beta-sandwich with 7 strands in 2 beta-sheets, which is arranged in a Greek-key beta-barrel. Some of these proteins have lost the ability to bind copper. Majority of family members contain multiple cupredoxin domain repeats; ceruloplasmin and coagulation factors V/VIII have six repeats; Laccase, ascorbate oxidase, and spore coat protein A, and multicopper oxidase CueO contain three repeats; and nitrite reductase has two repeats. Others are mono-domain cupredoxins, such as plastocyanin, pseudoazurin, plantacyanin, azurin, rusticyanin, stellacyanin, quinol oxidase and the periplasmic domain of cytochrome c oxidase subunit II.	2.0232e-66
NZ_CP011304.1\|WP_046662491.1\|2764708_2765836_-\|CRISPR-associated-protein-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	7.39137e-63
NZ_CP011304.1\|WP_046662488.1\|2760765_2762709_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|187792	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	4.44587e-20
NZ_CP011304.1\|WP_046662487.1\|2760395_2760668_+\|LapA-family-protein	gnl\|CDD\|377648	pfam06305, LapA_dom, Lipopolysaccharide assembly protein A domain. This family includes a domain found in lipopolysaccharide assembly protein A (LapA). LapA functions along with LapB in the assembly of lipopolysaccharide (LPS). Domains in this family are also found in some uncharacterized bacterial proteins.	0.000895653
NZ_CP011304.1\|WP_071846466.1\|2771005_2771437_-\|IS200/IS605-family-transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	1.60149e-44
NZ_CP011304.1\|WP_046662485.1\|2758674_2759517_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.14862e-32
NZ_CP011304.1\|WP_046662498.1\|2775267_2776701_-\|phosphoglucomutase/phosphomannomutase-family-protein	gnl\|CDD\|100093	cd05800, PGM_like2, This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.	0
NZ_CP011304.1\|WP_046662492.1\|2765808_2768823_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|378863	pfam12469, DUF3692, CRISPR-associated protein. This domain family is found in bacteria and archaea, and is typically between 101 and 138 amino acids in length. The proteins in this family are frequently annotated as CRISPR-associated proteins however there is little accompanying literature to confirm this.	1.56898e-43
NZ_CP011304.1\|WP_046662501.1\|2778988_2780089_-\|restriction-endonuclease-or-methylase	gnl\|CDD\|227091	COG4748, COG4748, Uncharacterized conserved protein [Function unknown].	4.51961e-119
NZ_CP011304.1\|WP_046662494.1\|2771487_2772747_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.42264e-29

>NZ_CP011304.1|WP_046662492.1|2765808_2768823_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MALGYWQAKIWGLLQAPVLKALHSNSGRSGDSFWRDLEVMKLWGKHNSEESTKKILKRIKLADYITSASDRAAISSLTQFVNYDQQTGLELRHLLSGEPLALKLANTTHKKIASNRTDYLKKQETRLFNQIPARLRTGISENEAKELFWWLWRCLPQAATKLLDDENLLLMPAETRIPDGSIWSHASVTAAIAGSLAGYDLTPEDVVNKWPTGKQLSHPYLVSFSFSPVQELIKASRKMGDFWAGSWILHYLSAKVCWQLAQQYGPDSLIYPSLYAQPLIDQWLLEKYSDFSSWIDPPGDQQLLTAGFPNVIILILPKDKVAAAMQTAKSRLLKEWKEISRQVFEKLQLKENSRTWDSWLNAQWQTYYVGVPIGREDQTLTSGEIYQENENIAENQAEDPEKAQSWRDKQNELYNLYDKKALFLEKEREFLQKAGELAHQKWKRPPFSSNVGSWWSSAFEQNLSALAAVKNARDWQIPTAFGPRSTISGLGPVVHPDGNNDWISEKASKEYWQRNAGLFNGIEQLNATETVKRGLHLILPKLLKNSDQKRLDAAYPDLTVGVAGYLKTGGDLDYFHRVCRTISRRLREDGKKIPTALTQPWGIPYIDNHIEPEYKRYHPRFLNAGWLVEELEIPDEEMANYRHQLSQLIDQNYPHNNPADWYVIAAGDGDGMGEWLKGQKMKPYRDYIPKSLHQYADHPPTETDTLEKEVQKAFGDFVTLDKRIGPSTHHALSRALLDFSNQLVPYLTEQRYAGRLIYGGGDDVLAYTNLWEWDKWLWDIRQCFKGEKDPHGEFNNAGDYWQWKGEKPAENLAKRPLFTMGKRATISFGMVIAHHSVPLAIALENLWEAEKKAKEHTYKGFDGKKVKKDAVQVRVLYGNGNGLESTAKFDVFPLWQKLLASNSDASLFEAVAGLWQQHPAPMIEAIEVWVKAFSSRQENLTTDNREFPEDLSNFLKHLWLTTENDANNLKEAVDSWMKLAAFMTRKREIKIGGSLLCIGTQSLP
>NZ_CP011304.1|WP_046662491.1|2764708_2765836_-|CRISPR-associated-protein-Cmr3
MYWYTITPLDVLLLRDAKPFSSKETAWAGSTFPPNSYTIAGALSSLLNRSKNSYFKITGPFLSFAGDTLYLPRPLGFANSDPLIPISWSDNLAISENHIFWDPLKPAPLAKANPRKNCQNRENEGQEENESKYRQYLPFEVILDYLKTGAIDPSQWLVKHEGEDKPWREEIRYHNAMQPGSKRLKDADGYFVEKAIRMLPGWSIAIGIDVNIPTPTTLRLGGEGHRVMLEKCDDLGQQWEQLKQQSRKNFQAEGKAIAYLATPGIFERRHDNNQAICRSWPWEWKLAHTVNSNQKAGHLVSVATDRAIPISCRIQSKENTSIPAPQVFAAPPGSQYYLNQPDRLFQDQPDSPEYHQRWRKLGYSELLWINYKENS
>NZ_CP011304.1|WP_046662490.1|2763494_2764274_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MNLIHFYLLSPLHTGGTTQEGNLVGIARESHTTLPYIPSSTIRGKIRSLATEETLKFKLFGNEIDQGAENLVQGDIWIGDGSILWLPVSSLSHGVVWITSPLLLRRWTRLTNTRLTIPPEYSCSFTKPNTNIYLKDAILKDNDLKDWSTWTSFIPQNSVSSGINKVLVLPDQHCTTLIQMSLWRQVKIKLDEHKSVDGGFRYEEAIPPDTLMYFPWGITSQANGTGQQSQADFKRLLADNEIIQIGGQESLGRGFVQQL
>NZ_CP011304.1|WP_046662489.1|2762772_2763162_-|hypothetical-protein
MTFDPRTISKPVFNALQELYLNTGDDSRRKEQKKQALELYTYLSTWGMMRLKAEETALNQEGKKEVVAKYFQCLEELSQRNHLSNSQGLTTLKDLSTDDYLGLTGLGLEIAQEFSFWANAIYSDVESGD
>NZ_CP011304.1|WP_046662488.1|2760765_2762709_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MSHSPLPRPNRPQKPILKNPAIQQQNNHQPPKKPPSGGGGNNNPPQPSPWLNAEKEPQPDQSASFVEYLRWMRAADHDYKDATKVQILQTAQENANYTQRLDQLNQRTQLLAKDGITFQVKSTWRIRVSGHRGPESILLPAFDALGMPYIPSSTLRGVARNQAIREIMAENNLEWKEAVEKTTLYFGDINAKEKKNKTGKVIFFDAYPLPTKNGGLEVDMANNIWSWKDDSTQYSPNPNPFLSLKEPTFLIGLRLASNCGDEKILEQVKQWLKKGLQLGIGSQVNSGYGQLKQIDDTSHPDNNKNSHDSGFYRLDFELEGQLIHGYQRFTQWQWNERRNEWQMRSAPVAEVRPTAFKSMLRYWFRVLASGVLPINEVQNIETELFGGINPKKYGYLQVNILDGKVSQKEPRTNAQGKNDPCGEQQGTLVLSLSSETPKDKEEAVKKLAKHLTWFLADMGGIGQGARRPSYSRKSREHAPWFRGSTLYIDSEEDFWAIPNDLQGFKQQFQQRLRDFYGILDNISETNINTNNLRTVDQVSQNQWIDAADSNCQIFVCAGNEQRGKPHALAILHSDTLKITSKNGQREYDGNLCGKVSGGAKPSPVWIADLGDYQIVTVFGATAAPRKNFVSELKAKTISQNFAQIFPL
>NZ_CP011304.1|WP_046662487.1|2760395_2760668_+|LapA-family-protein
MNTITNFLASAIVGGWIMTMAVFAIQNIQPVSLKFLQFESIKLPIGILLAFSLAMGFFIAAVIPAFLRKSKKSPRSRFSPPESGLDEFDF
>NZ_CP011304.1|WP_046662486.1|2759750_2760203_+|hypothetical-protein
MKCDRFLTFSLVLSLGLAFPPSLPAQNPPATTFQPGPWQPVARVNISRPVEIKIINQTDIDLNYDLSANIDSSPQLLSPGTETTLRGLVIPAYILINRANAAADRYSSSLIYAVEVNDDNLVTITVTKVPGSTPGYTTFNINQQGAIYIY
>NZ_CP011304.1|WP_046662485.1|2758674_2759517_-|alpha/beta-hydrolase
MPTIDISGVSHSYELFSPRADKPVLVFIHGWLLSRHYWQPLVDILSPDYPCLVYDLRGFGDSQKITSNSPPSSYNLESYSQDVITLLNRLNLDAAWLVGHSLGGSVALWAADICPERIKGVICMNAGGGIYLKEEFERFREAGRQILQRRPPWLPSVPLIDVLFSRMMVKQTLSKKWGKQRVIDFVRADYQAALGSLLETTTISEVHLLPQIVSRLPQPVYFLAGKEDTIMEVKYVNHLASFHPLFETGGNVIELSGCGHFAMLEQTAAVAEKMMAILSR
>NZ_CP011304.1|WP_002757875.1|2757880_2758189_-|hypothetical-protein
MLHRKIYQFCMDGQEVCIFLRDQQRWIDNARIVDLESDLVTIRYETEEEDEISSWEEMVRLESIGAVSRKLASVSRTNPDINVSEDCPEAEQLYPHSPDSLD
>NZ_CP011304.1|WP_046662484.1|2757256_2757718_-|biphenyl-2,3-dioxygenase
MNSSPYFHAKDIYQKFVAVVIVLISCWLVTFPAFAGSAPLEVKISLGSGQGELKFFPSQLDFIAGQKYKLILDNPSPTKHYFTAKDFADASWTQKVEAGKVEIKGAIHELELKPNAQAEWVIVPLKTGKYKLICTIPGHAEAGMVGEIAINNP
>NZ_CP011304.1|WP_046662493.1|2769721_2770339_-|PEP-CTERM-sorting-domain-containing-protein
MNILNIAKLATFGLGVTLVPLALTINNSAQAAVFTFNGGDNALSSITKTVDGITLTISNNQPRGSFFADGDGVAVLGGPSSPGQVTTSFNLTFSSAVQLTSYNIGFIEGLEGDESFTLSNGSSSSVETSPFSTGSRNFNNQFTVAAGQTVSFSVIFGTGDINDLIQWSELKVTPASNPTTTPEPSTILGLLAVGSLGALSRKLQG
>NZ_CP011304.1|WP_071846466.1|2771005_2771437_-|IS200/IS605-family-transposase
MSTDYNHRFCSVYKLTAPVVFVIKYRRKAINNEILVRLKEIFVSTLTKWESTLLDFNGESDHVHRIIDYKPDIALSKLIANLKTVSSRLIRKEFPDLAAKYFYNKPYFWTGAYFVASCGDITIEQLKKYVENQNSPKVETLPR
>NZ_CP011304.1|WP_046662494.1|2771487_2772747_+|transposase
MITLTYQYKLKVNRQQEREIIHILDVCKSVYNYALSERKDWLNSRKCLADHCSLVSEYIIPADQPYPNYFVQAKNLTEAKKIYPILKTVNAQVLQQVLKTLDKAFNQMKSKSFGFPRFKKKMRSFVFPALSKNFLGDEYLNFPQLGKIRIRKSREYPSGFEPKQARIIQKASGFYVSVSFQSTELVPDMTVGKTCLGIDAGIESFVATSRGDLIKDPRFLLKVQSKLKLLQGRLKRKTKGSSNWLKLQEKIARLHEKVSNTRRDWHFKLSHYLCDLADNIFVEDINFVSWSRGIVRKQSLDSAIGSFINEILPFVIWKRGKYYLKVDKNGTSQDCPNCGAFTGKKSLSERVHRCDSCGNIEPRDTASAKVIENRGKNAVGLTVLENARGGDLTGIDRLNQVDLVKSLRTENPPLHRASG
>NZ_CP011304.1|WP_149039034.1|2773083_2773437_+|hypothetical-protein
MQLRAFFMGLTVAGLVIPSVLGSTSKVLAEDITFTLENKTRVNMTEFYASPSGVKSWENDILGDDVLGSGEQVEININDERTTCNYDFQAKFADGDVVEKYNINICELAGGSYEFYD
>NZ_CP011304.1|WP_046662496.1|2773609_2774035_-|lysozyme-inhibitor-LprI-family-protein
MGKFLLTVLSIASLFTVGMATRSIAGPTSGARDRQLAQRPNCNNPQTQSEMNICASIAYQNADRKLNQVYQQLLPKLSAAHKQKLISAQQAWIKFRDSSCEFERSAFEGGSMAPMVYGFCLADVTEQRTKDLQRYLEDSDR
>NZ_CP011304.1|WP_046662497.1|2774205_2775225_+|methyltransferase
MSLPELPLHLQLTQMVSGYWLSQAIYAAAKLSLAEHLSKGAKSCQELASLTETNPAALYRLMRALASVGIFQETESQQFILTPLAEHLSSDHPRSVKATAIMLGEAPHYQAWGNVLHSIKTGQPSFDDVFGMGVFEYFQTHPLDAEIFEQSMNSFSLSEEKAILAVYDFSEFQTLVDVGGGYGEMLGTILEQYPQLKGILFDEEYVISHCQPTLEKHGIVDRCQTVGGSFFESVPSGGDGYLLKHIIHDWDDRRAIAILKNCCQVLDSNGKVLVLEMVVPAGNNPSAAKMLDLNMLVMCPGGKERTAEEFEELLSQAGLKLNRIIPTQEDICIIECVKK
>NZ_CP011304.1|WP_046662498.1|2775267_2776701_-|phosphoglucomutase/phosphomannomutase-family-protein
MTTVNPIKFGTDGWRGIIAADFTFDRVALLAPLAARVLADNYGQITGSRTIIVGYDRRFMAEDFAQTAAESLQKAGFDVLLSQSYAPTPAFSWAARSENALGAIVLTASHNPAKYLGLKVKGYFGGSVSPEITQQIEALLSNPPQFNAAAGKLSTFEPWSGYCQGLRQKVNIAAIAEAIESGQLKVYSDVMHGAAATGLERLLGVGITELRGNRDPLFGGGSPEPLPRNLTEIIDKLAHSANLAPLRVGLVFDGDSDRVAAIDGRGNFLSTQNLIPILIEHLAGKKGMRGEIVKTVSGSDLIPKLASLYGLSVFETPIGYKYIADRMLTTPVLIGGEESGGVGYGSHIPERDALLSALYVLEAVVESGQDLSDLYAQLQDKTGFYSQYDRIDLPLANMEARHQLITALDQEPLREIAGKQVTDCNPIDGYKFRLEDGSWLLIRFSGTEPVLRLYCESSTLDRVHEILAWAKSWATYI
>NZ_CP011304.1|WP_046662499.1|2776769_2777114_-|hypothetical-protein
MNSALPGDNSQLDGQLHSLVTTVTAIAEEHQQDCNGLLMLLRTLENLHRQIREQMFEPSLPNTRKDLYGLLRDIEETGGWPYIERMKLQMLMEKLLASEVGALDPAAKTDDREK
>NZ_CP011304.1|WP_046662500.1|2777487_2778321_+|photosystem-II-manganese-stabilizing-polypeptide
MRFRALLVAFLALCLGVLTACSDAPSAVLNRNELTYDEILNTGLANKCPQISEFTRGTLPLEPGESYVVTDLCLEPQEYFVKGEPVNKREAATFIPGKLLTRDTTSLEQMTASLTVGEDGVLTLKEEDGIDFQPITVQLPGGERVPLFFTIKGFTGKTEAGFSSINSSTDFVGDFKVPSYRGAGFLDPKGRGVVTGYDNAVALPASADSQDFQRANVKATELGKGTMSLQVTKVDASTGEFAGVFESEQPSDTDLGAKDAEEVKIRGIFYGRLEARA
>NZ_CP011304.1|WP_046662501.1|2778988_2780089_-|restriction-endonuclease-or-methylase
MEIDKLKEIAQKVETSRSQIQNEQATKTAFIMPFLQAWGYDVFNPMEVHPEYSADLTGLKGEKVDYAICLDNQPIILMECKSCHQNLEHPKHSSQLHRYFNATGANFGVLTNGIIYRFYTDTVKDNIMDDKPFFEFNILDFDESSVNELKRFSKSSTSTSDFNSGKIKEAARNLLYTKEVKKVIAQQLNDPSPDFVKFFVSHVYSGVRTASVVEKFTEIIKRSLKEYINDIIKEKFEEVFRKEPEPNPADAAADTPPEETGGDGINTTLEELEGFYIIKSILREEINTARIQFKDTRSYFGINLDGKVTKTVCRLRFNERTGKKSISIPDNVETGKEATTNINSLDEIYGVAEFLKSRIRYLTKDT

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Crispr_ID: NZ_CP011304_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011304_16

2929111-2929207

Orphan

Consensus_repeat	Method
TATCTATAGAACTAGAAAAGTTTACCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011304_16

>merge|NZ_CP011304|16|2929111-2929207|CRISPRCasFinder
TATCTATAGAACTAGAAAAGTTTACCAAACAGCGGGCGTTGGGTTTCCTTGCGTCAACCCAACCTACCTTATCTATAGAACTAGAAAAGTTCACCAA

>NZ_CP011304|16|15|2929111-2929207|CRISPRCasFinder
TATCTATAGAACTAGAAAAGTTTACCAA	ACAGCGGGCGTTGGGTTTCCTTGCGTCAACCCAACCTACCT
TATCTATAGAACTAGAAAAGTTCACCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011304.1\|WP_046662616.1\|2940742_2942206_+\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235998
NZ_CP011304.1\|WP_002735260.1\|2924080_2924584_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_002758945.1\|2923475_2923790_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_080949810.1\|2937694_2938186_-\|DUF29-domain-containing-protein	unknown	unknown	gnl\|CDD\|366774
NZ_CP011304.1\|WP_046662603.1\|2926333_2926933_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046662608.1\|2931513_2931750_-\|NifU-family-protein	unknown	unknown	gnl\|CDD\|376458
NZ_CP011304.1\|WP_046662605.1\|2928188_2929094_-\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379142
NZ_CP011304.1\|WP_046662615.1\|2938334_2940605_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	unknown	unknown	gnl\|CDD\|234921
NZ_CP011304.1\|WP_039900206.1\|2931823_2932471_-\|DUF3386-domain-containing-protein	unknown	unknown	gnl\|CDD\|371771
NZ_CP011304.1\|WP_046662601.1\|2922797_2923193_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP011304.1\|WP_046662604.1\|2926954_2928160_-\|serine-protease	unknown	unknown	gnl\|CDD\|379142
NZ_CP011304.1\|WP_158524801.1\|2922168_2922333_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046662611.1\|2935292_2935646_+\|diversity-generating-retroelement-protein-Avd	unknown	unknown	gnl\|CDD\|380307
NZ_CP011304.1\|WP_046662610.1\|2933316_2935182_+\|SUMF1/EgtB/PvdO-family-nonheme-iron-enzyme	unknown	unknown	gnl\|CDD\|224182
NZ_CP011304.1\|WP_046662600.1\|2920968_2921901_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NZ_CP011304.1\|WP_046662612.1\|2935642_2936701_+\|DNA-polymerase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP011304.1\|WP_046662607.1\|2929984_2931073_-\|isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|333905
NZ_CP011304.1\|WP_046662602.1\|2925070_2926285_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046662599.1\|2920546_2920972_+\|GtrA-family-protein	unknown	unknown	gnl\|CDD\|377229
NZ_CP011304.1\|WP_046662609.1\|2932811_2933048_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514

Protein	Function_ID	Function_description	E-value
NZ_CP011304.1\|WP_046662616.1\|2940742_2942206_+\|amidophosphoribosyltransferase	gnl\|CDD\|235998	PRK07349, PRK07349, amidophosphoribosyltransferase; Provisional.	0
NZ_CP011304.1\|WP_046662615.1\|2938334_2940605_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	gnl\|CDD\|234921	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL.	0
NZ_CP011304.1\|WP_080949810.1\|2937694_2938186_-\|DUF29-domain-containing-protein	gnl\|CDD\|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	4.45311e-50
NZ_CP011304.1\|WP_046662608.1\|2931513_2931750_-\|NifU-family-protein	gnl\|CDD\|376458	pfam01106, NifU, NifU-like domain. This is an alignment of the carboxy-terminal domain. This is the only common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown.	6.54207e-35
NZ_CP011304.1\|WP_046662605.1\|2928188_2929094_-\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	1.30377e-21
NZ_CP011304.1\|WP_046662610.1\|2933316_2935182_+\|SUMF1/EgtB/PvdO-family-nonheme-iron-enzyme	gnl\|CDD\|224182	COG1262, COG1262, Uncharacterized conserved protein [Function unknown].	7.81322e-78
NZ_CP011304.1\|WP_046662601.1\|2922797_2923193_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0.000227514
NZ_CP011304.1\|WP_046662604.1\|2926954_2928160_-\|serine-protease	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	4.1031e-20
NZ_CP011304.1\|WP_046662607.1\|2929984_2931073_-\|isocitrate-dehydrogenase	gnl\|CDD\|333905	pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase.	1.56602e-45
NZ_CP011304.1\|WP_046662611.1\|2935292_2935646_+\|diversity-generating-retroelement-protein-Avd	gnl\|CDD\|380307	NF033474, DivGenRetAVD, diversity-generating retroelement protein Avd. Avd (accessory variability determinant) is part of diversity-generating retroelement (GDR) system through which a portion of a protein-coding gene can be rewritten, creating diversity that can affect host range. The founding member of this family, bAvd, from a Bordetella bacteriophage, belongs to a retrohoming element called BPP-1. Members of this family are four-helix bundle proteins, related to those of family TIGR02436, some of whose members are found in long intervening sequence (IVS) regions in 23S rRNA.	9.85061e-42
NZ_CP011304.1\|WP_039900206.1\|2931823_2932471_-\|DUF3386-domain-containing-protein	gnl\|CDD\|371771	pfam11866, DUF3386, Protein of unknown function (DUF3386). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are about 220 amino acids in length.	1.89831e-123
NZ_CP011304.1\|WP_046662600.1\|2920968_2921901_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	7.14053e-72
NZ_CP011304.1\|WP_046662612.1\|2935642_2936701_+\|DNA-polymerase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	1.1203e-33
NZ_CP011304.1\|WP_046662599.1\|2920546_2920972_+\|GtrA-family-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	3.15843e-08
NZ_CP011304.1\|WP_046662609.1\|2932811_2933048_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	2.14273e-06

>NZ_CP011304.1|WP_046662605.1|2928188_2929094_-|trypsin-like-peptidase-domain-containing-protein
MSRAIKRILAGVGGLLLGLSTPLLAVPSYAPALEPNRANAYSSQQLSEQQLLQLARAITVKVLSGQGWGSGILVEKQGSSYKVLTNDHVLGRYRSRVWQIQTPDGKIHRGELVRTVRLNNYDLGLVSFRSSQVYSIADLANVDDLTIGDEVFAAGYPFDFTFTVGKVSLLSDKSFSGGYQIGYTNKIKNGMSGGPLLNRQGKVIGINGIHAYPLWGKSYVFADGTVTSPALWEQMSRLSWAIPIGTFLKSGSSSPSASSRQRPAVSPPSLPTHREPTFSEDFPSPSSSTPREKNPAPTPLW
>NZ_CP011304.1|WP_046662604.1|2926954_2928160_-|serine-protease
MSNNFLKISAALVSIAVFVVSPQIAKASTTEQIEKTAEKITVLIPSEEEGANGKITANGSGSIIAKEGRVYTVLTASHVICKDARDACKFYYDQLKIITWDGKQYPLDYNSIKKLPGVDLALVQFQSDQNYQLATLGNYQVADEQFIFASGWPDPKFIGKRKRLFNVGKVLPKDITPLLKIFPPELGYEIVYTSVTYGGMSGGPVLDINGRVIAVHGQNEAEKIEKVPVPIGFSLAIPITTFLKLAPQSGIQGQINVESSPPNALSLREIGDELYKAFEVPNKNDTNPLNWLNQGNKMWRLGQLALAYAAYEKALQLDAQLYQAWYGKGLLLTYWKRHQEALAAYEQALKINPDSDTAKKLRDKLQESLGGGNTPSLTPSQPTTAPTVEPSPQPSNPRRLW
>NZ_CP011304.1|WP_046662603.1|2926333_2926933_+|hypothetical-protein
MLMKWLTNWQVSLVAAVLLTNALVSPSMAQTGNQSDVTGPILSTGDFAGQTIPTTTVTVTGFQGGEPAQISVNQAAASVNTQLANNGLTSPTGTPISPTVQQPILSILTADAQAGNNITAVTAALTTVPGAPPLSVIQNLLDGLNGLTSGGAVNPANLLAAVQTYNEMILASNEAFLASPPAELRAIQASLAALVEAAR
>NZ_CP011304.1|WP_046662602.1|2925070_2926285_+|hypothetical-protein
MLLKKAKRNSQMRHIFSGGIFITSCVGTAILCDGVKAIPSPLDIDAASIRVSQEKIIINSPVELERTDRILTTNSFSTTEGLADSNLPSSLENKLEKSSLDTLATEKTGTISTLEEWKANLGTMQASQLFPAGGNNSPEVEKWQAQASTPVDTNVSPELQRLRQEFLIEEPQTLSAKLAEVVVAPGASISTPIGFGASLGQIFGGFGFQSRTRFTNQADGGLSLGGGLGDPQKIVGLDVTLAILSLFDDNAGRGSFSFKIHRSLPEGFAVALGFENAINWGGTDGGSSIYGVVSKFFQLTETTKEPFSQLTLSLGVGGGRFRSEGAIEDGVNSLGVFASAGLRIVEPVSAIVEWSGQDLNAGISLIPFQNIPLTVNLAGADLTGNAGDGARFVMSIGYNYFFPR
>NZ_CP011304.1|WP_002735260.1|2924080_2924584_+|hypothetical-protein
MKTFVERYRSWFNWTTLAMVVLGFWLSASFVIDLIIIPSLSVAGMMTQNGFASAGYLLFGIFNHLELVCAAIVLCSFVVFHRYHTLIHLPEHRSLLFAGVLLVITLIYTYFLTPNLSAMGLLAPVTASGMSGEMMSLQIGYWFLEVVKGLIAFTLLRWCWRDAFKLA
>NZ_CP011304.1|WP_002758945.1|2923475_2923790_-|hypothetical-protein
MDKDFRNYRMVCTLTFGDIYGQIIVWLIVIFLTLASTLALWSSTRQIFALATVGLVVVLSLPFLLFAFVTTLLNHIEFVPIETETNIRRGPVPGVSGSRVPAAG
>NZ_CP011304.1|WP_046662601.1|2922797_2923193_-|hypothetical-protein
MLKNLFGGKKSDFYLELKETDGEQQATATTAAAAPVVEAPAAAVESAAAPVAEKKAQKTSIKKEKQAKETPAAPVSAPAPVATTNGKVEPQEVEFATKYLITPSLSRRRPGPSLNGFKDMARKAKLPANRG
>NZ_CP011304.1|WP_158524801.1|2922168_2922333_-|hypothetical-protein
MMLILKGISIGSSFGSSQVKQIGFLVRIASAMWNSGNLPQVFRHCWAYLNGSLF
>NZ_CP011304.1|WP_046662600.1|2920968_2921901_+|glycosyltransferase-family-2-protein
MKKITIMTPCYNEEGNVEDLYLRVKEVFNQLPNYEYEHLFIDNASQDKTVDELKKFAQKDPGVKVIVNARNFGPVRSGYYGILQCYGDAVIPIVADLQDPPELILEFVKKWEEGYKVVKAFKTPMKEGAFFYFARQIFYSLMDNLSDIKITRNFTGFGLYDQKVINVLREINDPYPYFRGLIEELGFESFSFEYQQQRRKRGISSYNFYRYYSDAMLGITSHSQVPLRLATMLGFTLSLLSLLVALGYLIAKLLFWDYFPLGTAPIMIGLFLLASVQLFFIGIIGEYIGLMHMRILKRPLVVERERINFE
>NZ_CP011304.1|WP_046662599.1|2920546_2920972_+|GtrA-family-protein
MYILKKAKLVNLIKKHKFARFLLVGAINTLFGYFLYGSLILIGLNYKYAVLLATIIGVLFNFQTTGKLVFGSKNNKLIFRFVLVYVVTFLLNVEALRIVDAIDIGIEQKTKMLIAGAILVLPMAVISFILMKLFVFRERSQ
>NZ_CP011304.1|WP_046662607.1|2929984_2931073_-|isocitrate-dehydrogenase
MTENIPTIVVMHGDQTGEELLLEALRVLQPSIIRQPLNFADFDLSLAQRRQSNNQVVHEAAEATLKTGLALKAATITPEIKGDVGSPNAILREAMNSQVILRIGRRIPGIRPIGGVNSPIAIVRMAVDDAYGAKEWRETTATGDEIAYRTSRISRATSRAVAEFTFQQAKKTGARVFGGPKFTVSATYEGMFKEELDAAAQRHPEVRYQPLLIDATFALLLQTDGEALVIPALNRDGDLLSDFVLQLYGSIAGAESLVLGFDEETLAVKTIMAEAPHGTAPALEGKNIANPMAMILASAALLGYIETSEARKASRAIYESVFETIHEGKKTPDLGGQMTMSEFTDEVIRRVVSKLEVWSALG
>NZ_CP011304.1|WP_046662608.1|2931513_2931750_-|NifU-family-protein
MSLTLTPDNVEKVLDEMRPYLMSDGGNVELVEIDGPVVKVRLQGACGSCPSSTMTLKMGIERRLREEIPEIAEVEQAL
>NZ_CP011304.1|WP_039900206.1|2931823_2932471_-|DUF3386-domain-containing-protein
MTVATTNARDIFRSAYENRYTWDEGFPGYTADIILTQGEEVHTGKIQVNADYSVEVTGIDDEKVQESIYNQMRDIVTHRKRGNFEASHGKNQFNFGQDDPTGAVEILVTGDAMGSNYKVRGQEICQVSRVMGPMAFTINTEESLDTGEGYISIRYNAIFRNAKTDELKGKRDFKETYEKIGNYYLPSCQVINAIDVGGEKSTTEFTFINLQLLES
>NZ_CP011304.1|WP_046662609.1|2932811_2933048_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MTKLSPKVTAIIRSGEQQGYVGECVEISIVTQGNTLDEVVNNLQEAILLHLEGEDPREFGLVAQPFLQIIFELQPEYA
>NZ_CP011304.1|WP_046662610.1|2933316_2935182_+|SUMF1/EgtB/PvdO-family-nonheme-iron-enzyme
MAEETAKIKLYRKTYQLPQLNRPDLLVLQDQIQERQQLIKTGKRVRNTWLGLRKKEEPLNFEETFQELERLVGDYNQLIGFLTDHKDEYRRFFQSLTEEIKEAVAVKCQKLAETERKRQSLENSIGSADLRDTLRLQKQQIFRTVILVGRASLLMLKKIDLISESIQKLAEDQDTQKQVFSKMIGELNGYKQVYQLQLELDNLEKEAIEMAKVAINLEQYLKPIIGQFQGLIDRVVTIDGELSRSVSEVESLVQNILSSESAVSFRKNENLSASLLNFLVTSEEKRGRLAIALERAEQEGWQWTDVEIPDEEIELETAIQRINNHVIERVGNFTTSVVGDSPIPPPSQPKTPLDNKTPSSPSDWMIPSKSAQPETPLDNKTPFTENLPNGITLEMVNLPAGQFLMGSPDSDPDARDWEKPQHQVKVNSFAIGKYLVTQAQYEAVMGTNPSYFKNNPQNPVEMVTWNDAQAFCQKLSQITGKTYRLPTEAEWEYACRAGTTTRYYFGDDANQLGDYAWYIGNPQQTTHPVGQKKPNAWGLYDMSGNVWEWCEDDWHDNYIGAPKDGSAWTINNDNRSHPKCLRGGSWNINPYDCRSADRGRSNPVYVNDDDGFRVACVSPGL
>NZ_CP011304.1|WP_046662611.1|2935292_2935646_+|diversity-generating-retroelement-protein-Avd
MSELSIIQKMYDLIKWYVPILTRIPKTHKFTLGERLINNLYSVLEELILIKYEREKLDRLVALNARLDVIRYQTRLLWDFSPLSPERYEYVSKLIEEIGQELGGWIKQQKNKRTPTK
>NZ_CP011304.1|WP_046662612.1|2935642_2936701_+|DNA-polymerase
MKRYGNLYTDIINFQNLTLAANKAQKGKRFKENVLEFNYNRERELIILEQELRDKTYQHGNYKTFYIREPKIRMISAAPYRDRVVHHALCNIINPIFERTFINNSYANRVGFGTHKALRKFIQYSRTSRYVLQCDIEKYFPSIDHEILKIMIEKKIKCRDTLWLIESIIDNSNEQIPVNHCFDDEDLLTSISRRKGLPMGNLTSQFFANIFLNGLDHFVKENLKVNKYLRYVDDFSLFSDDREFLCYARQEIEKYLASIKLRIHSVKSQLFETKIGATFVGFRVFPDRVKVKNDNLHRGRRRIKRLKQELANGTITLEEMSRSLQSWFAHLQHGDTRQLREKLFDSLISMRN
>NZ_CP011304.1|WP_080949810.1|2937694_2938186_-|DUF29-domain-containing-protein
MAVETALSMKALYDQDFVLWASKTAELLKLKKFDEVDWENLIEEVECMGKSDRRAVESLLTRLIEHLFKLAYHKSERERERNVCHWVGEIASFRTQLGEWLETTTLTNHARDYFQKAYSNARKTLIQAKAVTRDAIPLEPPFSLEQVLDGEWFPIDIDHYFDI
>NZ_CP011304.1|WP_046662615.1|2938334_2940605_+|phosphoribosylformylglycinamidine-synthase-subunit-PurL
MTTPFTAAEIASEGIKPEEYEEIVKRLGRHPNKAELGMFGVMWSEHCCYKNSRPLLKQFPTTGEKILVGPGENAGVVDLGDGLRLAFKIESHNHPSAVEPFQGAATGVGGILRDIFTMGARPIAILNSLRFGNLQDARNRRIFAGVVEGISHYGNSVGVPTVGGEIYFDNAYNGNPLVNAMALGLMETEEIVKSGAKGLGNPVLYVGSTTGRDGMGGASFASAELTDKSMDDRPAVQVGDPFLEKSLIEACLEAFKTGAVVAAQDMGAAGITCSTSEMAAKGGVGIELDLDKIPVRETGMVPYEYLLSESQERMLFVAASGREGELIEIFHRWGLQAVVAGQVIAEPIVRILFKGEIAAEIPATALADNTPIYHRELLAEPPEYAQKAQLWEDATIPIPESHNEILLKLLDSPSIASKRWVYRQYDHQVQNNTVILPGGADAAVIRVRPLGANPANSRRGVAATTDCNPRYVYLDPYNGAKLAVAEAARNLSCVGADPIAVTDNLNFGSPENSIGYWQLATACQGIAEACREMNTPVTGGNVSLYNETVDAAGSPQSIYPTPVIGMVGLVPDIGQICGQGWQKAGDLIYILGFSLPTIGASEYLAVIHGLVTGKPPVIDFELERKVQAACRRGIRAGWVKSAHDCAEGGLATALAECSISGQLGAEIDLSWQHQGRFDAVLFGELASCIIVSVSPENRQDWEEYLKTQLGDYWQITGKVSEKSDNLLIFDRDKQPAIDVSLETIQQVWSKAIERRL
>NZ_CP011304.1|WP_046662616.1|2940742_2942206_+|amidophosphoribosyltransferase
MSSHLDSYLSLNRIDKPEEACGVFGLYAPEEEVAKLTYFGLYALQHRGQESAGIATYDGETVHCYKEMGLVSQVFSETVLKTLPGTHAVGHTRYSTTGSSRRANAQPAVIETRLGKLSLAHNGNLVNTFELRNVLEKRGCDFVTTTDSEMIAVAIGQEVDSGKDWIQAAIDAFSYCSGAYSLVIGTPTGIIGARDPNGVRPLVIGVLQEEGNPSRYVLASETCGLDIIGADYLRDVQPGELVWISEDGLSSVDWAMKPEKKLCVFEMIYFARPDSIVHEESLYTYRVRLGEQLAKESPVEADMVMGVPDSGIPAAIGFSRISDIPYAEGLIKNRYVGRTFIQPTQHMRESGIKMKLNPLKDVLQGKRVIIVDDSIVRGTTSRKLVKALRDAGAREVHMRISSPPVTHPCFYGIDTDNQEQLIAATKSVAEIQAQIGVESLAYLSQDGMLTATKEDPKTFCTACFNGDYPIPVPDNVKRSKLILEKVK

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Crispr_ID: NZ_CP011304_17

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011304_17

2934358-2934461

Orphan

Consensus_repeat	Method
CAACCAAAGACACCCCTAGACAATAAAACTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011304_17

>merge|NZ_CP011304|17|2934358-2934461|CRISPRCasFinder
CAACCAAAGACACCCCTAGACAATAAAACTCCTTCTTCTCCATCAGATTGGATGATTCCATCTAAATCTGCTCAACCAGAGACACCCCTAGACAATAAAACTCC

>NZ_CP011304|17|16|2934358-2934461|CRISPRCasFinder
CAACCAAAGACACCCCTAGACAATAAAACTCC	TTCTTCTCCATCAGATTGGATGATTCCATCTAAATCTGCT
CAACCAGAGACACCCCTAGACAATAAAACTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011304.1\|WP_046662616.1\|2940742_2942206_+\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235998
NZ_CP011304.1\|WP_002735260.1\|2924080_2924584_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046662615.1\|2938334_2940605_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	unknown	unknown	gnl\|CDD\|234921
NZ_CP011304.1\|WP_080949810.1\|2937694_2938186_-\|DUF29-domain-containing-protein	unknown	unknown	gnl\|CDD\|366774
NZ_CP011304.1\|WP_046662603.1\|2926333_2926933_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046662608.1\|2931513_2931750_-\|NifU-family-protein	unknown	unknown	gnl\|CDD\|376458
NZ_CP011304.1\|WP_046662605.1\|2928188_2929094_-\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379142
NZ_CP011304.1\|WP_046662606.1\|2929200_2929824_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372967
NZ_CP011304.1\|WP_039900206.1\|2931823_2932471_-\|DUF3386-domain-containing-protein	unknown	unknown	gnl\|CDD\|371771
NZ_CP011304.1\|WP_046662612.1\|2935642_2936701_+\|DNA-polymerase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP011304.1\|WP_046662604.1\|2926954_2928160_-\|serine-protease	unknown	unknown	gnl\|CDD\|379142
NZ_CP011304.1\|WP_046662607.1\|2929984_2931073_-\|isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|333905
NZ_CP011304.1\|WP_046662611.1\|2935292_2935646_+\|diversity-generating-retroelement-protein-Avd	unknown	unknown	gnl\|CDD\|380307
NZ_CP011304.1\|WP_046662621.1\|2946399_2946942_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239315
NZ_CP011304.1\|WP_071846528.1\|2946010_2946358_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
NZ_CP011304.1\|WP_046662618.1\|2942420_2944136_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|275313
NZ_CP011304.1\|WP_046662620.1\|2945788_2946007_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046662619.1\|2944331_2945672_-\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|235037
NZ_CP011304.1\|WP_046662602.1\|2925070_2926285_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046662609.1\|2932811_2933048_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514

Protein	Function_ID	Function_description	E-value
NZ_CP011304.1\|WP_046662616.1\|2940742_2942206_+\|amidophosphoribosyltransferase	gnl\|CDD\|235998	PRK07349, PRK07349, amidophosphoribosyltransferase; Provisional.	0
NZ_CP011304.1\|WP_046662615.1\|2938334_2940605_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	gnl\|CDD\|234921	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL.	0
NZ_CP011304.1\|WP_080949810.1\|2937694_2938186_-\|DUF29-domain-containing-protein	gnl\|CDD\|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	4.45311e-50
NZ_CP011304.1\|WP_046662608.1\|2931513_2931750_-\|NifU-family-protein	gnl\|CDD\|376458	pfam01106, NifU, NifU-like domain. This is an alignment of the carboxy-terminal domain. This is the only common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown.	6.54207e-35
NZ_CP011304.1\|WP_046662605.1\|2928188_2929094_-\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	1.30377e-21
NZ_CP011304.1\|WP_046662606.1\|2929200_2929824_-\|hypothetical-protein	gnl\|CDD\|372967	pfam14218, COP23, Circadian oscillating protein COP23. This family includes the circadian oscillating protein COP23 from Cyanothece sp. (strain PCC 8801). The levels of this peripheral membrane protein display a circadian oscillation.	2.99087e-46
NZ_CP011304.1\|WP_039900206.1\|2931823_2932471_-\|DUF3386-domain-containing-protein	gnl\|CDD\|371771	pfam11866, DUF3386, Protein of unknown function (DUF3386). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are about 220 amino acids in length.	1.89831e-123
NZ_CP011304.1\|WP_046662612.1\|2935642_2936701_+\|DNA-polymerase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	1.1203e-33
NZ_CP011304.1\|WP_046662604.1\|2926954_2928160_-\|serine-protease	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	4.1031e-20
NZ_CP011304.1\|WP_046662607.1\|2929984_2931073_-\|isocitrate-dehydrogenase	gnl\|CDD\|333905	pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase.	1.56602e-45
NZ_CP011304.1\|WP_046662611.1\|2935292_2935646_+\|diversity-generating-retroelement-protein-Avd	gnl\|CDD\|380307	NF033474, DivGenRetAVD, diversity-generating retroelement protein Avd. Avd (accessory variability determinant) is part of diversity-generating retroelement (GDR) system through which a portion of a protein-coding gene can be rewritten, creating diversity that can affect host range. The founding member of this family, bAvd, from a Bordetella bacteriophage, belongs to a retrohoming element called BPP-1. Members of this family are four-helix bundle proteins, related to those of family TIGR02436, some of whose members are found in long intervening sequence (IVS) regions in 23S rRNA.	9.85061e-42
NZ_CP011304.1\|WP_046662621.1\|2946399_2946942_+\|peroxiredoxin	gnl\|CDD\|239315	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), which functions as an alkyl-hydroperoxide reductase during post-diauxic growth.	1.66939e-67
NZ_CP011304.1\|WP_071846528.1\|2946010_2946358_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	1.21582e-09
NZ_CP011304.1\|WP_046662618.1\|2942420_2944136_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|275313	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase. Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate].	1.0526e-87
NZ_CP011304.1\|WP_046662619.1\|2944331_2945672_-\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|235037	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	0
NZ_CP011304.1\|WP_046662609.1\|2932811_2933048_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	2.14273e-06

>NZ_CP011304.1|WP_046662609.1|2932811_2933048_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MTKLSPKVTAIIRSGEQQGYVGECVEISIVTQGNTLDEVVNNLQEAILLHLEGEDPREFGLVAQPFLQIIFELQPEYA
>NZ_CP011304.1|WP_039900206.1|2931823_2932471_-|DUF3386-domain-containing-protein
MTVATTNARDIFRSAYENRYTWDEGFPGYTADIILTQGEEVHTGKIQVNADYSVEVTGIDDEKVQESIYNQMRDIVTHRKRGNFEASHGKNQFNFGQDDPTGAVEILVTGDAMGSNYKVRGQEICQVSRVMGPMAFTINTEESLDTGEGYISIRYNAIFRNAKTDELKGKRDFKETYEKIGNYYLPSCQVINAIDVGGEKSTTEFTFINLQLLES
>NZ_CP011304.1|WP_046662608.1|2931513_2931750_-|NifU-family-protein
MSLTLTPDNVEKVLDEMRPYLMSDGGNVELVEIDGPVVKVRLQGACGSCPSSTMTLKMGIERRLREEIPEIAEVEQAL
>NZ_CP011304.1|WP_046662607.1|2929984_2931073_-|isocitrate-dehydrogenase
MTENIPTIVVMHGDQTGEELLLEALRVLQPSIIRQPLNFADFDLSLAQRRQSNNQVVHEAAEATLKTGLALKAATITPEIKGDVGSPNAILREAMNSQVILRIGRRIPGIRPIGGVNSPIAIVRMAVDDAYGAKEWRETTATGDEIAYRTSRISRATSRAVAEFTFQQAKKTGARVFGGPKFTVSATYEGMFKEELDAAAQRHPEVRYQPLLIDATFALLLQTDGEALVIPALNRDGDLLSDFVLQLYGSIAGAESLVLGFDEETLAVKTIMAEAPHGTAPALEGKNIANPMAMILASAALLGYIETSEARKASRAIYESVFETIHEGKKTPDLGGQMTMSEFTDEVIRRVVSKLEVWSALG
>NZ_CP011304.1|WP_046662606.1|2929200_2929824_-|hypothetical-protein
MKLQTLTKTLTIALIGVGAALTLQSPSQAQTRFECLVPVTGPHVGVPTTFVQSGPNEYRAVIRWSSDYFSGSGYTPMRRCEEVTGRFNSLNSRPGGIGNINTGYLNGEPVIYVSSSGRERANSANLLFTLKRGDDARQKLAQLFGLRQGASSSPLFESSSDSATIDFSKFLESVPVETNPATGSSSSPAPGTSPEQSPQKPSGGSAW
>NZ_CP011304.1|WP_046662605.1|2928188_2929094_-|trypsin-like-peptidase-domain-containing-protein
MSRAIKRILAGVGGLLLGLSTPLLAVPSYAPALEPNRANAYSSQQLSEQQLLQLARAITVKVLSGQGWGSGILVEKQGSSYKVLTNDHVLGRYRSRVWQIQTPDGKIHRGELVRTVRLNNYDLGLVSFRSSQVYSIADLANVDDLTIGDEVFAAGYPFDFTFTVGKVSLLSDKSFSGGYQIGYTNKIKNGMSGGPLLNRQGKVIGINGIHAYPLWGKSYVFADGTVTSPALWEQMSRLSWAIPIGTFLKSGSSSPSASSRQRPAVSPPSLPTHREPTFSEDFPSPSSSTPREKNPAPTPLW
>NZ_CP011304.1|WP_046662604.1|2926954_2928160_-|serine-protease
MSNNFLKISAALVSIAVFVVSPQIAKASTTEQIEKTAEKITVLIPSEEEGANGKITANGSGSIIAKEGRVYTVLTASHVICKDARDACKFYYDQLKIITWDGKQYPLDYNSIKKLPGVDLALVQFQSDQNYQLATLGNYQVADEQFIFASGWPDPKFIGKRKRLFNVGKVLPKDITPLLKIFPPELGYEIVYTSVTYGGMSGGPVLDINGRVIAVHGQNEAEKIEKVPVPIGFSLAIPITTFLKLAPQSGIQGQINVESSPPNALSLREIGDELYKAFEVPNKNDTNPLNWLNQGNKMWRLGQLALAYAAYEKALQLDAQLYQAWYGKGLLLTYWKRHQEALAAYEQALKINPDSDTAKKLRDKLQESLGGGNTPSLTPSQPTTAPTVEPSPQPSNPRRLW
>NZ_CP011304.1|WP_046662603.1|2926333_2926933_+|hypothetical-protein
MLMKWLTNWQVSLVAAVLLTNALVSPSMAQTGNQSDVTGPILSTGDFAGQTIPTTTVTVTGFQGGEPAQISVNQAAASVNTQLANNGLTSPTGTPISPTVQQPILSILTADAQAGNNITAVTAALTTVPGAPPLSVIQNLLDGLNGLTSGGAVNPANLLAAVQTYNEMILASNEAFLASPPAELRAIQASLAALVEAAR
>NZ_CP011304.1|WP_046662602.1|2925070_2926285_+|hypothetical-protein
MLLKKAKRNSQMRHIFSGGIFITSCVGTAILCDGVKAIPSPLDIDAASIRVSQEKIIINSPVELERTDRILTTNSFSTTEGLADSNLPSSLENKLEKSSLDTLATEKTGTISTLEEWKANLGTMQASQLFPAGGNNSPEVEKWQAQASTPVDTNVSPELQRLRQEFLIEEPQTLSAKLAEVVVAPGASISTPIGFGASLGQIFGGFGFQSRTRFTNQADGGLSLGGGLGDPQKIVGLDVTLAILSLFDDNAGRGSFSFKIHRSLPEGFAVALGFENAINWGGTDGGSSIYGVVSKFFQLTETTKEPFSQLTLSLGVGGGRFRSEGAIEDGVNSLGVFASAGLRIVEPVSAIVEWSGQDLNAGISLIPFQNIPLTVNLAGADLTGNAGDGARFVMSIGYNYFFPR
>NZ_CP011304.1|WP_002735260.1|2924080_2924584_+|hypothetical-protein
MKTFVERYRSWFNWTTLAMVVLGFWLSASFVIDLIIIPSLSVAGMMTQNGFASAGYLLFGIFNHLELVCAAIVLCSFVVFHRYHTLIHLPEHRSLLFAGVLLVITLIYTYFLTPNLSAMGLLAPVTASGMSGEMMSLQIGYWFLEVVKGLIAFTLLRWCWRDAFKLA
>NZ_CP011304.1|WP_046662611.1|2935292_2935646_+|diversity-generating-retroelement-protein-Avd
MSELSIIQKMYDLIKWYVPILTRIPKTHKFTLGERLINNLYSVLEELILIKYEREKLDRLVALNARLDVIRYQTRLLWDFSPLSPERYEYVSKLIEEIGQELGGWIKQQKNKRTPTK
>NZ_CP011304.1|WP_046662612.1|2935642_2936701_+|DNA-polymerase
MKRYGNLYTDIINFQNLTLAANKAQKGKRFKENVLEFNYNRERELIILEQELRDKTYQHGNYKTFYIREPKIRMISAAPYRDRVVHHALCNIINPIFERTFINNSYANRVGFGTHKALRKFIQYSRTSRYVLQCDIEKYFPSIDHEILKIMIEKKIKCRDTLWLIESIIDNSNEQIPVNHCFDDEDLLTSISRRKGLPMGNLTSQFFANIFLNGLDHFVKENLKVNKYLRYVDDFSLFSDDREFLCYARQEIEKYLASIKLRIHSVKSQLFETKIGATFVGFRVFPDRVKVKNDNLHRGRRRIKRLKQELANGTITLEEMSRSLQSWFAHLQHGDTRQLREKLFDSLISMRN
>NZ_CP011304.1|WP_080949810.1|2937694_2938186_-|DUF29-domain-containing-protein
MAVETALSMKALYDQDFVLWASKTAELLKLKKFDEVDWENLIEEVECMGKSDRRAVESLLTRLIEHLFKLAYHKSERERERNVCHWVGEIASFRTQLGEWLETTTLTNHARDYFQKAYSNARKTLIQAKAVTRDAIPLEPPFSLEQVLDGEWFPIDIDHYFDI
>NZ_CP011304.1|WP_046662615.1|2938334_2940605_+|phosphoribosylformylglycinamidine-synthase-subunit-PurL
MTTPFTAAEIASEGIKPEEYEEIVKRLGRHPNKAELGMFGVMWSEHCCYKNSRPLLKQFPTTGEKILVGPGENAGVVDLGDGLRLAFKIESHNHPSAVEPFQGAATGVGGILRDIFTMGARPIAILNSLRFGNLQDARNRRIFAGVVEGISHYGNSVGVPTVGGEIYFDNAYNGNPLVNAMALGLMETEEIVKSGAKGLGNPVLYVGSTTGRDGMGGASFASAELTDKSMDDRPAVQVGDPFLEKSLIEACLEAFKTGAVVAAQDMGAAGITCSTSEMAAKGGVGIELDLDKIPVRETGMVPYEYLLSESQERMLFVAASGREGELIEIFHRWGLQAVVAGQVIAEPIVRILFKGEIAAEIPATALADNTPIYHRELLAEPPEYAQKAQLWEDATIPIPESHNEILLKLLDSPSIASKRWVYRQYDHQVQNNTVILPGGADAAVIRVRPLGANPANSRRGVAATTDCNPRYVYLDPYNGAKLAVAEAARNLSCVGADPIAVTDNLNFGSPENSIGYWQLATACQGIAEACREMNTPVTGGNVSLYNETVDAAGSPQSIYPTPVIGMVGLVPDIGQICGQGWQKAGDLIYILGFSLPTIGASEYLAVIHGLVTGKPPVIDFELERKVQAACRRGIRAGWVKSAHDCAEGGLATALAECSISGQLGAEIDLSWQHQGRFDAVLFGELASCIIVSVSPENRQDWEEYLKTQLGDYWQITGKVSEKSDNLLIFDRDKQPAIDVSLETIQQVWSKAIERRL
>NZ_CP011304.1|WP_046662616.1|2940742_2942206_+|amidophosphoribosyltransferase
MSSHLDSYLSLNRIDKPEEACGVFGLYAPEEEVAKLTYFGLYALQHRGQESAGIATYDGETVHCYKEMGLVSQVFSETVLKTLPGTHAVGHTRYSTTGSSRRANAQPAVIETRLGKLSLAHNGNLVNTFELRNVLEKRGCDFVTTTDSEMIAVAIGQEVDSGKDWIQAAIDAFSYCSGAYSLVIGTPTGIIGARDPNGVRPLVIGVLQEEGNPSRYVLASETCGLDIIGADYLRDVQPGELVWISEDGLSSVDWAMKPEKKLCVFEMIYFARPDSIVHEESLYTYRVRLGEQLAKESPVEADMVMGVPDSGIPAAIGFSRISDIPYAEGLIKNRYVGRTFIQPTQHMRESGIKMKLNPLKDVLQGKRVIIVDDSIVRGTTSRKLVKALRDAGAREVHMRISSPPVTHPCFYGIDTDNQEQLIAATKSVAEIQAQIGVESLAYLSQDGMLTATKEDPKTFCTACFNGDYPIPVPDNVKRSKLILEKVK
>NZ_CP011304.1|WP_046662618.1|2942420_2944136_-|ATP-binding-cassette-domain-containing-protein
MEIIAQLEKVSYIYPESSNLVLKNISLAIHRGEFLGIIGPTGAGKTTLCLTLNGIVPQFYGGRFFGYATVAGLDTLTHPVSTLARYVGAVFEDPETQLLATSIENEIAFTLENLRLPREEIKARIPKVLAAVRLEGMEKKSPGELSGGQKQRLAIAAALAVQPALLILDEPTSQLDPVGSQEVFATIKELNRHLGVTIVMVSHAAEEMAEYADRLVLLREGAIEAMGTPAEIYSQVQRLQENALRPPQVATTFALINQKIGAVESIPVTLDRSFARLNELKSFYHHLTPHPPLSSVSDPLNPLLRVKNLCHTYPDGTTALRDVSLDIAEGEYLLIIGQNGAGKSTLVKHFLNLLSATTGQVMIDGRSINSFSVSDLARSIGYVAQNPDNQIFNTTVEKEVSFALTNLGYSPEIVTQRTEASLEAMGLLEYRSYHPLSLPKGDRARVVIAAILAMEPRIVVFDEPTTGQDYQGAKAILEVSRQLHQMGKTVIVITHHLYLMPEYAERVIIMGQGTILLDAPIRQAYHQTDLLAKTYLTPPQAVLLAQKLGQLSGYPNSLLTPQEIADCFQRI
>NZ_CP011304.1|WP_046662619.1|2944331_2945672_-|3-phosphoshikimate-1-carboxyvinyltransferase
MSIVTLNPLQSHQDLVIDPAKITGLRGKITIPGDKSISHRSLMLGAIAEGETVIHGLLLGEDPRSTASCFRAMGVEISQLNSEKVIVKGRGLGNLEEPLEILDAGNSGTTIRLMLGLLAGHQDRFFVVTGDASLRSRPMSRVVKPLKEMGAQIWGRKANSLAPLAVSGESLQPIHYYSPVASAQVKSCLLLAGLLTEGKTTITEPALSRDHSERMLRAFGANIEVDGETNSVTVTGYPTLTGQTVIVPGDISSAAFWLVAGAIVPNSELLIENVGINPTRTGVLQVLQAMGADITLENQRVVTGEPVADLRVKSSQLQATTIAGEIIPRLIDEIPILAVAAVFAQGTTIIKDAEELRVKESDRLTVMATQLDRLGAKVRELPDGLEITGGTGLFGTEVDSFTDHRIAMSLAIAALNSRQPTTIHRAEAAGISYPDFVSTLQQICQE
>NZ_CP011304.1|WP_046662620.1|2945788_2946007_+|hypothetical-protein
MPTTAQEVYNQVVCHLSSGERLRLATIILNELVGQQQPSLDQSDTWTEEDQIDLVNFSLNYAAKTCSDVEGI
>NZ_CP011304.1|WP_071846528.1|2946010_2946358_+|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MTFSSGDVVTVDFPGVTGIKRRPAVVLSSETYHSLRPDVIVGLITTQSKVLGITDYALQDWVSAGLRVASIFRCFIVTLPPSANLAVIGHLSERDWQGIKARVRISLASLDETKP
>NZ_CP011304.1|WP_046662621.1|2946399_2946942_+|peroxiredoxin
MSRRQLLSFLSVVILAFFALIPDANALGGSQPPLNQPAPDFSLPTNTGEGNISLSDYRGKWVVLYFYPKDFTPGCTLEARRFQQDLPKYMAKNTQVLGVSADDVDSHAEFCDSEGLKFPLLADTTGDVSKAYGSWMGYVSLRHTYLIDPDGILKEIYLGVNPAIHSAEVLARLEELQASS

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Crispr_ID: NZ_CP011304_18

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011304_18

3306602-3306697

TypeV

Consensus_repeat	Method
ATCAAGGGGGGATCAAGGGGGGATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011304_18

>merge|NZ_CP011304|18|3306602-3306697|CRISPRCasFinder
ATCAAGGGGGGATCAAGGGGGGATCGGCACCCCCCTTATCAAGGGGGGCAGGGGGGATCGACACCTCTCTTATCAAGGGGGGATCAAGGGGGGATC

>NZ_CP011304|18|17|3306602-3306697|CRISPRCasFinder
ATCAAGGGGGGATCAAGGGGGGATC	GGCACCCCCCTTATCAAGGGGGGCAGGGGGGATCGACACCTCTCTT
ATCAAGGGGGGATCAAGGGGGGATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011304.1\|WP_002742805.1\|3299169_3299445_-\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|340594
NZ_CP011304.1\|WP_046662852.1\|3294106_3295270_-\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|235596
NZ_CP011304.1\|WP_002783420.1\|3299551_3300856_-\|threonine-synthase	unknown	unknown	gnl\|CDD\|236065
NZ_CP011304.1\|WP_046662867.1\|3319124_3320468_+\|TldD/PmbA-family-protein	unknown	unknown	gnl\|CDD\|223389
NZ_CP011304.1\|WP_046662857.1\|3303002_3303959_-\|GTPase-Era	unknown	unknown	gnl\|CDD\|234624
NZ_CP011304.1\|WP_046662866.1\|3318428_3319031_+\|DUF456-family-protein	unknown	unknown	gnl\|CDD\|225395
NZ_CP011304.1\|WP_046662864.1\|3314085_3315252_-\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|235654
NZ_CP011304.1\|WP_046662853.1\|3295558_3298321_-\|class-I-SAM-dependent-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|223934
NZ_CP011304.1\|WP_045362346.1\|3302181_3302859_-\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|224489
NZ_CP011304.1\|WP_080949811.1\|3315251_3315620_-\|FHA-domain-containing-protein	unknown	unknown	gnl\|CDD\|366133
NZ_CP011304.1\|WP_046662861.1\|3309221_3311234_+\|protein-kinase	unknown	unknown	gnl\|CDD\|319862
NZ_CP011304.1\|WP_046662856.1\|3301632_3302178_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|223813
NZ_CP011304.1\|WP_046662854.1\|3298531_3298999_+\|DUF29-domain-containing-protein	unknown	unknown	gnl\|CDD\|366774
NZ_CP011304.1\|WP_046662863.1\|3313072_3313945_+\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	unknown	unknown	gnl\|CDD\|234597
NZ_CP011304.1\|WP_046662865.1\|3316956_3318426_+\|TldD/PmbA-family-protein	unknown	unknown	gnl\|CDD\|223389
NZ_CP011304.1\|WP_046662860.1\|3306756_3308436_-\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|238121
NZ_CP011304.1\|WP_046662862.1\|3311530_3313042_+\|threonine-ammonia-lyase,-biosynthetic	unknown	unknown	gnl\|CDD\|236417
NZ_CP011304.1\|WP_002742776.1\|3316308_3316773_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046662858.1\|3303994_3304762_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046662859.1\|3305132_3306413_+\|trypsin-like-serine-protease	unknown	unknown	gnl\|CDD\|273938

Protein	Function_ID	Function_description	E-value
NZ_CP011304.1\|WP_002742805.1\|3299169_3299445_-\|MoaD/ThiS-family-protein	gnl\|CDD\|340594	cd17074, Ubl_CysO_like, ubiquitin-like (Ubl) domain found in Mycobacterium tuberculosis CysO and similar proteins. CysO, also termed 9.5 kDa culture filtrate antigen cfp10A, together with CysM (Cysteine synthase M), forms a protein complex CysM-CysO that represents a new cysteine biosynthetic pathway in Mycobacterium tuberculosis. The replacement of the acetyl group of O-acetylserine by CysO thiocarboxylate to generate a protein-bound cysteine is catalyzed by CysM in a pyridoxal 5?-phosphate (PLP)-dependent manner. The family also includes QbsE that functions as the sulfide donor for the biosynthesis of thioquinolobactin in Pseudomonas fluorescens. A JAMM motif protein QbsD catalyzes removal of the carboxy-terminal dipeptide from QbsE. Both CysO and QbsE are similar to prokaryotic sulfur carrier proteins such as ThiS and MoaD, containing the beta-grasp ubiquitin-like fold.	1.99102e-49
NZ_CP011304.1\|WP_046662852.1\|3294106_3295270_-\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|235596	PRK05764, PRK05764, aspartate aminotransferase; Provisional.	0
NZ_CP011304.1\|WP_046662861.1\|3309221_3311234_+\|protein-kinase	gnl\|CDD\|319862	cd16383, GUN4, porphyrin-binding protein domain GUN4. GUN4 is a porphyrin-binding protein involved in chlorophyll biosynthesis regulation and intracellular signaling, found in aerobic photosynthetic organisms. It has been implicated in retrograde signalling between the chloroplast and nucleus. GUN4 can bind protoporphyrin IX (PIX) and magnesium protoporphyrin IX (MgPIX), substrate and product of the Mg-chelatase, as well as heme and cobalt protoporphyrin IX (CoPIX). It may play a role in protecting plants from reactive oxygen species (ROS)-mediated damage.	3.07058e-70
NZ_CP011304.1\|WP_046662867.1\|3319124_3320468_+\|TldD/PmbA-family-protein	gnl\|CDD\|223389	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only].	1.07815e-78
NZ_CP011304.1\|WP_046662857.1\|3303002_3303959_-\|GTPase-Era	gnl\|CDD\|234624	PRK00089, era, GTPase Era; Reviewed.	1.00957e-159
NZ_CP011304.1\|WP_046662866.1\|3318428_3319031_+\|DUF456-family-protein	gnl\|CDD\|225395	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown].	5.45459e-21
NZ_CP011304.1\|WP_046662864.1\|3314085_3315252_-\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|235654	PRK05957, PRK05957, pyridoxal phosphate-dependent aminotransferase.	0
NZ_CP011304.1\|WP_046662853.1\|3295558_3298321_-\|class-I-SAM-dependent-DNA-methyltransferase	gnl\|CDD\|223934	COG1002, COG1002, Type II restriction enzyme, methylase subunits [Defense mechanisms].	1.85486e-19
NZ_CP011304.1\|WP_045362346.1\|3302181_3302859_-\|uracil-DNA-glycosylase	gnl\|CDD\|224489	COG1573, COG1573, Uracil-DNA glycosylase [DNA replication, recombination, and repair].	2.93184e-18
NZ_CP011304.1\|WP_080949811.1\|3315251_3315620_-\|FHA-domain-containing-protein	gnl\|CDD\|366133	pfam00498, FHA, FHA domain. The FHA (Forkhead-associated) domain is a phosphopeptide binding motif.	4.4752e-15
NZ_CP011304.1\|WP_002783420.1\|3299551_3300856_-\|threonine-synthase	gnl\|CDD\|236065	PRK07591, PRK07591, threonine synthase; Validated.	0
NZ_CP011304.1\|WP_046662856.1\|3301632_3302178_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|223813	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair].	5.57493e-67
NZ_CP011304.1\|WP_046662854.1\|3298531_3298999_+\|DUF29-domain-containing-protein	gnl\|CDD\|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	2.5474e-58
NZ_CP011304.1\|WP_046662863.1\|3313072_3313945_+\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	gnl\|CDD\|234597	PRK00050, PRK00050, 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH.	3.7134e-158
NZ_CP011304.1\|WP_046662860.1\|3306756_3308436_-\|DnaJ-domain-containing-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	4.09906e-81
NZ_CP011304.1\|WP_046662862.1\|3311530_3313042_+\|threonine-ammonia-lyase,-biosynthetic	gnl\|CDD\|236417	PRK09224, PRK09224, threonine ammonia-lyase IlvA.	0
NZ_CP011304.1\|WP_046662865.1\|3316956_3318426_+\|TldD/PmbA-family-protein	gnl\|CDD\|223389	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only].	9.13288e-129
NZ_CP011304.1\|WP_046662859.1\|3305132_3306413_+\|trypsin-like-serine-protease	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	1.4099e-119

>NZ_CP011304.1|WP_046662859.1|3305132_3306413_+|trypsin-like-serine-protease
MTHNIFNDNISPSNEGNPKRSKSSAMKKLFAYSSLLVLGAGLGIGATYAYSQNPLELAQNIATAATNPRPSTAAAAAPSTLVIPTNFVASVVQEVGPAVVRINASREVNGGGDFSEFANDPVFRRFFGSQIPERGERQVQRGTGSGFIISNDGKIITNAHVVEGADKVTVTLKDGRTIDGKVLGSDPLTDVAVVQVETGNLPTVKLGNSDSLQVGEWAIAIGNPLGLDNTVTTGIISAKERNGSQIGASDKRVDFLQTDAAINPGNSGGPLLNARGEVIGVNTAIIQNAQGLGFAIPIKTAQRIAEQLIATGKVEHPYLGVQMVQLTPEVKEQLADSPMADNWTIPDDSGVLLVRVMRDSPAAAAGLRSGDVLKSVGGKNVTDPDAVQEIVANTQIGDNLPVEISREGQKINLNIQVGSLNTANKS
>NZ_CP011304.1|WP_046662858.1|3303994_3304762_+|hypothetical-protein
MQRIILFLLVLILGCSNHLELSIAGNLSDRLTNYPRWMTKPVVSFASGDLVYPDWMVGNWTVTSTLIDLTAPLAPQIITPGFESNRRYLEQSIEFPVRFIEKAISRPINAAFLSTIISKPSIVADRSFNGLAISRAYLGNQSVLSVKTDPNNPNRQITFLRGAHQLISTVIARNSETPSRNQFIATEISQQIFRGETNTYLNEVETTTAYQLLSPNKILGDQVTAIYLSPQSPDYFQAPNRPVALYRYRLELRKD
>NZ_CP011304.1|WP_046662857.1|3303002_3303959_-|GTPase-Era
MNDFINSQAVNLDSAVIPIAPTGFKSGFIGIIGRPNVGKSTLMNQLVGQKIAITSPIAQTTRNRLRGIVTGERSQMIFVDTPGIHKPHHELGKVLVKNAENAINSVDLVLFVVDSSNFLGSGDRYIADLLTKNQTPTILGLNKADQQPEDREPLDDSYRTLAAENNWPLLKFSALEGMGIAELQNLLIDSLEVGPYYYPPDLVTDQPERFIMAELIREQILLQTRQEIPHSVAVVIERVEETPALTRVFAAINVERDSQKGIVIGKNGSMLKALGTSARSAIQKLIAGEVYLKLFVKVEPKWRQSRSLLAEFGYRTEE
>NZ_CP011304.1|WP_045362346.1|3302181_3302859_-|uracil-DNA-glycosylase
MTDIKTLIKQVHQEAKKEDFPIDTLIYQEAKKDPFEPVLYAGNLASQLCFFGRDLGRDEVYAGQPLIGAAGRMVREGFFQAWQGRKSHDRQELLSVCDQIFLTNTVPYKPPGNKAYSGEVKDRFRPFIEKLLVFYWQGDHIITLGTEAFKWFEPYGKPKEVDKFYLDKERFTKKLLVTLTATDEDGLKQQKKVTLLPLPHPSPLNQRYYALFPDLLQKRLTEFAF
>NZ_CP011304.1|WP_046662856.1|3301632_3302178_-|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MRIYGNRPIKTLAGQLTRPTTARVREALFNIWQHKLSGCRWLDLCAGNGSMGAEALCRGASLVIGIEQSGRAGEIIKENWRNLATSPQQFQVIRGDVLTKLATLAGESFDLIYFDPPYESGLYLPVLTAISQYNLLDSLGEIAVEHNPKSWPAINLEGLTICRQKRYGNTTLTFYQKTDEL
>NZ_CP011304.1|WP_002783420.1|3299551_3300856_-|threonine-synthase
MTLATNIETSKFIPTFTRLVSKEGGTSYPLKALNICEETFAPLEVDYDYDLIRRTVTRESIQAGPNSIWRYRSFLPVESENPIDVGTGMTPLVKSHRLARRLGLKNLYIKNDAVNMPTLSFKDRVVSVALTRAKELGFTTVSCASTGNLANSTAAIAAHAGLDCCVFIPSDLEAGKILGTLIYNPTVMAVKGNYDQVNRLCSEVGNTYGWGFVNINLRPYYSEGSKTLGFEVAEQLGWKLPDHIVAPLASGSLFTKIYKGFQEFVKVGLVADKAVRFSGAQAEGCSPIAQAFKEGRDFVAPVKPNTIAKSIAIGNPADGVYALDIARKTGGNIESVTDAEIIEGIKLLAETEGIFTETAGGTTIAVLKKLVEAGKIDPEETTVVYITGNGLKTQEAVQGYIGEPLLIEPKLESFERALERSRTLERLEWQQVLV
>NZ_CP011304.1|WP_002742805.1|3299169_3299445_-|MoaD/ThiS-family-protein
MAVKVLVPTPLQQFTKNKATVECSASNVGDLIESLEASFPGIKARLCDEEGAPRRFLNFYVNSEDIRFLDGTKTPLKDGDEVSIVPAVAGG
>NZ_CP011304.1|WP_046662854.1|3298531_3298999_+|DUF29-domain-containing-protein
MSKTLYEQDFQVWLATTISHLQKREFAALDTDNLIEELTELGKSEKRTLESNLMILLAHLLKLKVQQDAPPSMKDSWYCSIIEHRQRIEKNLRNTPSLKSYLETAIEEAYPDARQVAIKEGKLAQFGVRIPPENDYPQICPFLPEQILDENFYGN
>NZ_CP011304.1|WP_046662853.1|3295558_3298321_-|class-I-SAM-dependent-DNA-methyltransferase
MPLSWNEIKNRAIAFQKEWEGETSEKAESQSFWNDFFNVFGISRRRVASFEQPIKKADNKQGFIDLLWKGTILVEHKSKGKDLEKATQQAKDYFPNLKEHELPRYILVSDFQRFKLYDLDSGNQWEFELSNFVDNVHLFDFIAGYEKRVYKDEDPVNIQAAELMGKLHDCLKEIGYMGHNLEVYLVRLLFCLFADDTGIFNKGIFWEYIDIHTKEDGSDLAMHIAYIFQVLNTPEDKRLKNLDENLTQFPYINGKLFEESLPLAAFDSKMRVMLLEACAFDWGKISPAIFGSMFQAVMNPKERRNLGAHYTSEKNIQKVIKPLFLDDLHREFEKIKGNRNKLLEFQKKIANLYFLDPACGCGNFLIITYRELRDLEILVLQELDKLDKTGQLVTDISAIIQVDVNQFAGIEYDEFAVRVAEVAMWLIDHQMNIKVSNTFGQYFVRLPLKKAAKIVHGNALRIDWEEVISKEKLNFILGNPPFVGAMIMNEQQRNDMAYVFDGEKGIGVLDYVCAWYIKAAQIIQGNRIRVAFVSTNSISQGEQVALLWNILFQKYHLKIHFAHRTFKWSNEAKGNAAVHCVIIGFGSFNITTKILFDYEDIQGESLVVQSNNINPYLVDGSDIIISNRSFPLSNVPLMRFGSMPRDGGNFIFTELEKEEFLKLEPKAEKWIKPYTGAQEFINGYSRYCLWLVDISPTELKTLPEVIKRVDKVKNFRLKSKAASTRKFAATPTLFCQIAQPDTNYLLVPRVSSERRKYIPIGFMNKNVIGNDQVLLIPNANLYLFGILTSEMHMAWVKYVCGRLKSDYRYSKDIVYNNYPFPENITDKQKQTVETCAQAVLDTRVKYPDSSLADLYDPLTMPPDLLKAHQKLDKAVDLCYRPQPFTSELNRIEYLFELYEKLTAPLLPTSKQKPPKRKNPQ
>NZ_CP011304.1|WP_046662852.1|3294106_3295270_-|pyridoxal-phosphate-dependent-aminotransferase
MKLASRVNQVTPSLTLAIDSLAKEMKKNGEDVCSFSAGEPDFDTPIHIKAAAKKALDEGKTRYGPAAGEPGLRKAIAEKLLRDNQLAYNADNIIVTNGGKQSLYNLIMALIEAGDEVIIPAPYWLSYPEMVTLAGGTSVIVNTSLENQYKITPEQLEAAITPKTKLFVLNSPSNPTGIVYTPEEIAALAKIVVEKDILVVSDEIYEKILYDGAIHRSIASLGPEIFQRSIISNGFAKAFSMTGWRVGYIAGPVEIVEAMTNIQGHSTSNVCTFAQYGAIAALESPQDCIEEMVKAFSQRRQYILERVRSLPGLNCPTPNGAFYVFIDISQTGLKSRDFCQKLLETQKVAAIPGIAFGADDCIRLSYATDLKTIEKGFDRIDKFIGTL
>NZ_CP011304.1|WP_046662860.1|3306756_3308436_-|DnaJ-domain-containing-protein
MAKKLDFVIPAVGGVTGANLSACLGNIGLVGGFGGISVGLVGMTGIGILTSSAIYASLQGLETNDHNVGLALGIGSLGGIGIYSTFGGVGVAVKGTAFGVGVGSMAIAGGIVGLGVYGVMKMLSPTYSDNNFYSNLEFFDRITREYEEALFWQEVTGKYENLEAELQQLLEEVSIQENQQLDSTEITIPERLSWQCFQTLKGHQENIGAIDVSPDGKIIASAGEDQTIKLWQRETGKLIYSFVGVNEPIQTLAISPNGKSIIAGGLDGRISQWQLDTKQYKSSFFARVNAPHSHDGVILQLAFAANERFIVSASNDKTLRIWGYHTGELKRTLIGHEEAVNTCAISPDSQIIASGSDDKTIKLWRFDHSYAYQTFIGDRAAVNSLAFSNDGQYLISGGSDKAIKIWDIKTGEMIKSWQAHEQAIISIAINPHRHLIASASRTEIKIWQGQTGELIKILRGTAPLKFSPDGQFLITGSYGDKVKIWSEMLGELEILPPDSEDWWEVLEVSKNASFSEVKQRYYQLARQYHPDHNSSAMAIKIMQKINRAYERFLFSISQQ
>NZ_CP011304.1|WP_046662861.1|3309221_3311234_+|protein-kinase
MSLCLNPDCSHQNTPTDKFCHKCGSQLLLRERYRALKLIGQGGFGKTFQAIDEDKPSKPYCVIKQFFPSAQGTETLQKAAELFKEEAIRLDSLGRYPQIPELYAYFTGNGGRQYLVQEYIEGQNLEQELKQEGVFNEAKIKHLLSEILPILEFIHSKQVIHRDIKPENIIRRKSDNKLILVDFGAAKFVSPLNRSMTGTIIGSAEYIAPEQGNGKAVNASDLYSLGVTCLYLLTGISPFDLFDGGEHQWVWRQWLVNNPVSNELGNILDKLIEFGTKKRYQSASEVLQALQIKTSVSISQTTIQKPVNPIISVPQTPPSIQLKSAKGIDYRNLEDLLKQKRWKEADEETANLVRKVTNRVKDWLRDEDIQKFPCEDLRTIDQLWVYYSNGKFGFSVQGQIYREIGGMEEYNERNWDIFGSLVGWQKNNSWNWQDINYSWQAPQGHLPLIRYGYKGEGSYIIYHLTSRIFICQTSSHQIINQKQPVATIIQSPIISVPQTPPSIQLKSAEGIDYRNLEDLLKRQQWKEADQETERVMLQTANRTKERWLRKEDIDKLPCEDLRTIDQLWVKYSNGKFGFSVQAKIYHDLGGTQEYNDKIWNGFGDKIGWRINNSWIEYKDVIFDFKALQGHLPADVPIWRCGNWHDPIWWSSFPAIKRGINLFSRVETCKM
>NZ_CP011304.1|WP_046662862.1|3311530_3313042_+|threonine-ammonia-lyase,-biosynthetic
MYCDYLVQILTARVYDVAQETPLEFAPNLSQRLHNQLLLKREDMQSVFSFKLRGAYNKMAYLSRDLLQKGVIAASAGNHAQGVALGARQLGTQAIIVMPVTTPQVKIDAVKARGGIVVLHGDTYDDSYTYARQLEAEKGLTFIHPFDDPEVIAGQGTIGMEILRQYQQPIEAIFVAIGGGGLISGIAAYVKRLRPEIKIIGVEPVDSDAMNQSLKAGYRVRLSQVGLFADGVAVREVGEETFRLCQQYVDEIILVDTDDICAAIKDVFQDTRSILEPAGALAVAGAKAYVEREGIEDKTLVAVACGANMNFDRLRFVAERAELGERREALYAVTIPEQPGSLRRFCECVGKRNLTEFSYRIADEKEAHIFVGAQIENRSDAKKLAESFEACGFKTLDISDDELTKLHLRHMVGGRSHLADYELFYRFEFPERPGALMKFVASMSPHWNISVFHYRNNGADYGRIVVGIQVPPDEMNQWQAFLDTLGYRYWDESQNPAYQLFLG
>NZ_CP011304.1|WP_046662863.1|3313072_3313945_+|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH
MNQDFPHISVLSQELIAGLNIQPGGHYLDLTLGGGGHSRLLLEAHPETKVTAIDRDQSALEAAKISLGPYLDSRLTLWWGNFADYNGQNSSFDGIIADLGVSSPQFDQSERGFSFRHTAALDMRMDRCQSLTAADIINHWQEKELADLFYQYGEERLSRPIARSIVQKRPFTTTTELAAVIASSVPASYRYGRIHPATRVFQSLRIAVNQELDSLQKLLNQAPHWLKSGGIIAMISFHSLEDRLIKYGFREDNSLKIITKKPIIPSREEQAKNPRSRSAKLRIAQKISCS
>NZ_CP011304.1|WP_046662864.1|3314085_3315252_-|pyridoxal-phosphate-dependent-aminotransferase
MKNLLSRMDGVQTPIIPVVGQLIKANPGTISLGQGVVSYYPPQEALESLSLFLANPKNHQYQSVAGIPPLLAVIRQKLAEDNRIEISDKQAIFVTAGSNMAFMNAILAITSPGDEIILNTPFYFNHEMVIKMADCQVILVATDKNYQLRPAAIEEAITEKTKAVVTISPNNPTGVVYPENTLREVNRICQKKGIYHIHDEAYEYFTYNHARHFSPAAIVGSESWTISLFSLSKAYGFASWRIGYMVVPEHLSEAINKIQDTILICPPVVSQYAALGALQVGKSYPLEQLKTISKVREICLNALESIGDICDVATAEGAFYFFLKIPTDKNDFQLVKTLIEQQRVAVLPGSTFGITEGCYLRLAYGALSPETALTAVERLVKGLRYFSQ
>NZ_CP011304.1|WP_080949811.1|3315251_3315620_-|FHA-domain-containing-protein
MSKAFLLHEETGTLLEISGRKNRFYLGKVNPKVTVDLDLSHLPDAEIVSRVHAIIYVEKDGFYLEDAGSLNGTYLNGENLQSGRKKLKSGDRITLGYYRAINLLFEIESAHPPQYTFKSLAN
>NZ_CP011304.1|WP_002742776.1|3316308_3316773_-|hypothetical-protein
MATATQFLNISDLTKDDYCVFGLAICFLKREGELEKVAVLEPIPSAALEAIVKGIPTSYEFARAMALGEVFQDDNPQIPSNFPDNTQLCENFVERAIAATRTYKNQPHLQGLIPLGGQKDDLNFSLEKKRILNAVHVVRTEDNVKQHSHTHKVL
>NZ_CP011304.1|WP_046662865.1|3316956_3318426_+|TldD/PmbA-family-protein
MSPTLLISKELPTLKYNPSLERFDSSWAAPLSTLLGLGRAAGATFIEFFLERVNYISCLAEDDSITSLSPKLSTGAGIRLFRGKADCYVSTNDLSFQGLKNALEKGLSILGLNLPSPNAYIPEINLEMFRDYATVKNKDIWLNNCSSLGEMGDILLNANVQLNQKASHVQSRRAAYFRDWQEILVAASDGTFARDIRLTQSVGYNLLCADGTNRSSIGKRVGSTSNPDFLRTWNAEESAAEVAESAGKMLYADYVESGSYPIVMANEFGGVIFHEACGHLLETTQIEQKTTPFLDKKGEKIAHENLTAWDEGLSDKAFGTIDMDDEGMPAQRTLLIENGILKNFIADRTGSIKTGHPRTGSGRRQNYTYAAASRMRNTYIAPGEYTLDNLFNSIDKGIYCKKMGGGSVGATGEFNFAVEEAYLIENGNLTKPLKGATLIGSAKEIMNKISMCSQDLGLAAGFCGSVSGSVYVTVGQPHLKVDSITVGGR
>NZ_CP011304.1|WP_046662866.1|3318428_3319031_+|DUF456-family-protein
MTLVILYYFLIAIMIVGIIGELLPAIPGMSLILIAMLVWGFVTKFAGMGVALTVAFVVLLLSIGVEFLASYLGAQKVGASNWSQIGLVVGLLAGIFGLLPALPIGGPIIGLFVGPVVGAFLGEYAYRRDLELTPRLQQSLKVCVGIVVGTVIGHVAKAMLATAAVIVFIVTTWPNLSSVISYQLSVISFQFSDLSSLFFN
>NZ_CP011304.1|WP_046662867.1|3319124_3320468_+|TldD/PmbA-family-protein
MPKVEDIAQIANSSAQALGIAKYDIYGSSVDETDVDVFQGEPKQVQASNRSSVIVRVWNQDNQVGVTSTTDVDPVGLQLALKTAQEASVFGVKENVPDFSPAATAPTTEVASEMYNQAPVSTLIDKLLAAEKSLLAAHPAIASVPYNGLGQQQVRRFYLNSDGAMRQEARSYASVYLYTKTEQEGKKPRSAGAFRVSPGLEKLDIDGCIEEAITKTVSHLDYQPITTGKYLVVFAPRAFLSLMGAFSNLFNAQNVLDKQSLSTPESLGTQIAATALNLCDDSLHPANVAAETFDSEGTPTRRVELIKEGILSNFLHSTITAKRMNTEPTGNGNIGSKVTVSPHFYHVFASANQPKSYSLETAENVVLIDSLQALHAGVNSLQGSFSLPFDGWLVNKNERVSIDSATVAGDILTLLKSIVYLEPEAVITPSGVCPYVWVEGLSITGEA

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Crispr_ID: NZ_CP011304_19

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011304_19

3438700-3438803

Orphan

Consensus_repeat	Method
CCCCTTCGACGTAGCTCAGGGCAAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011304_19

>merge|NZ_CP011304|19|3438700-3438803|CRISPRCasFinder
CCCCTTCGACGTAGCTCAGGGCAAGCGAGTAACGATTGGGAAAGAGATAGCGGTGATGATTGGAATTTTGATACACCCCCCCTTCGACGTAGCTCAGGGCAAGC

>NZ_CP011304|19|18|3438700-3438803|CRISPRCasFinder
CCCCTTCGACGTAGCTCAGGGCAAGC	GAGTAACGATTGGGAAAGAGATAGCGGTGATGATTGGAATTTTGATACACCC
CCCCTTCGACGTAGCTCAGGGCAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011304.1\|WP_046662950.1\|3448094_3449318_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|272992
NZ_CP011304.1\|WP_002782757.1\|3441586_3441919_+\|TMEM165/GDT1-family-protein	unknown	unknown	gnl\|CDD\|225030
NZ_CP011304.1\|WP_046662947.1\|3444107_3445268_+\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|200272
NZ_CP011304.1\|WP_046662949.1\|3447374_3448073_+\|urea-ABC-transporter-ATP-binding-subunit-UrtE	unknown	unknown	gnl\|CDD\|274567
NZ_CP011304.1\|WP_002770735.1\|3433117_3433333_+\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
NZ_CP011304.1\|WP_008202451.1\|3437367_3437985_+\|UbiX-family-flavin-prenyltransferase	unknown	unknown	gnl\|CDD\|180312
NZ_CP011304.1\|WP_046662944.1\|3440771_3441392_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|238734
NZ_CP011304.1\|WP_046662942.1\|3436640_3437384_+\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|224331
NZ_CP011304.1\|WP_046662948.1\|3445271_3446426_+\|urea-ABC-transporter-permease-subunit-UrtC	unknown	unknown	gnl\|CDD\|132449
NZ_CP011304.1\|WP_046662941.1\|3433831_3436060_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NZ_CP011304.1\|WP_046662946.1\|3442696_3444013_+\|urea-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|372603
NZ_CP011304.1\|WP_046662945.1\|3441998_3442274_+\|TMEM165/GDT1-family-protein	unknown	unknown	gnl\|CDD\|225030
NZ_CP011304.1\|WP_002777291.1\|3446589_3447336_+\|urea-ABC-transporter-ATP-binding-protein-UrtD	unknown	unknown	gnl\|CDD\|274568
NZ_CP011304.1\|WP_046662938.1\|3429492_3430833_+\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	unknown	unknown	gnl\|CDD\|237677
NZ_CP011304.1\|WP_046662939.1\|3430897_3431284_+\|DUF2358-domain-containing-protein	unknown	unknown	gnl\|CDD\|370865
NZ_CP011304.1\|WP_002734724.1\|3432882_3433077_+\|50S-ribosomal-protein-L33	unknown	unknown	gnl\|CDD\|177033
NZ_CP011304.1\|WP_002800735.1\|3439294_3440722_+\|glycogen-synthase-GlgA	unknown	unknown	gnl\|CDD\|234809
NZ_CP011304.1\|WP_002734613.1\|3427745_3428057_-\|BMC-domain-containing-protein	unknown	unknown	gnl\|CDD\|132897
NZ_CP011304.1\|WP_046662940.1\|3431293_3432706_-\|DUF697-domain-containing-protein	unknown	unknown	gnl\|CDD\|368297
NZ_CP011304.1\|WP_002741693.1\|3428822_3429107_-\|Nif11-like-leader-peptide-family-natural-product-precursor	unknown	unknown	gnl\|CDD\|369562

Protein	Function_ID	Function_description	E-value
NZ_CP011304.1\|WP_046662950.1\|3448094_3449318_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|272992	TIGR00275, TIGR00275, flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. [Unknown function, Enzymes of unknown specificity].	1.07172e-170
NZ_CP011304.1\|WP_002782757.1\|3441586_3441919_+\|TMEM165/GDT1-family-protein	gnl\|CDD\|225030	COG2119, COG2119, Predicted membrane protein [Function unknown].	1.64983e-24
NZ_CP011304.1\|WP_046662947.1\|3444107_3445268_+\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|200272	TIGR03409, urea_trans_UrtB, urea ABC transporter, permease protein UrtB. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	6.21225e-68
NZ_CP011304.1\|WP_046662949.1\|3447374_3448073_+\|urea-ABC-transporter-ATP-binding-subunit-UrtE	gnl\|CDD\|274567	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	2.20756e-129
NZ_CP011304.1\|WP_002770735.1\|3433117_3433333_+\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	1.87588e-32
NZ_CP011304.1\|WP_008202451.1\|3437367_3437985_+\|UbiX-family-flavin-prenyltransferase	gnl\|CDD\|180312	PRK05920, PRK05920, aromatic acid decarboxylase; Validated.	1.04827e-128
NZ_CP011304.1\|WP_046662944.1\|3440771_3441392_-\|VWA-domain-containing-protein	gnl\|CDD\|238734	cd01457, vWA_ORF176_type, VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. The members of this subgroup are Eubacterial in origin and have a conserved MIDAS motif. Not much is known about the biochemistry of these.	3.68167e-97
NZ_CP011304.1\|WP_046662942.1\|3436640_3437384_+\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|224331	COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion].	2.53149e-23
NZ_CP011304.1\|WP_046662948.1\|3445271_3446426_+\|urea-ABC-transporter-permease-subunit-UrtC	gnl\|CDD\|132449	TIGR03408, urea_trans_UrtC, urea ABC transporter, permease protein UrtC. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	1.13269e-150
NZ_CP011304.1\|WP_046662941.1\|3433831_3436060_+\|GAF-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.94509e-40
NZ_CP011304.1\|WP_046662946.1\|3442696_3444013_+\|urea-ABC-transporter-substrate-binding-protein	gnl\|CDD\|372603	pfam13433, Peripla_BP_5, Periplasmic binding protein domain. This domain is found in a variety of bacterial periplasmic binding proteins.	0
NZ_CP011304.1\|WP_046662945.1\|3441998_3442274_+\|TMEM165/GDT1-family-protein	gnl\|CDD\|225030	COG2119, COG2119, Predicted membrane protein [Function unknown].	7.13399e-24
NZ_CP011304.1\|WP_002777291.1\|3446589_3447336_+\|urea-ABC-transporter-ATP-binding-protein-UrtD	gnl\|CDD\|274568	TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	1.76283e-152
NZ_CP011304.1\|WP_046662938.1\|3429492_3430833_+\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	gnl\|CDD\|237677	PRK14333, PRK14333, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
NZ_CP011304.1\|WP_046662939.1\|3430897_3431284_+\|DUF2358-domain-containing-protein	gnl\|CDD\|370865	pfam10184, DUF2358, Uncharacterized conserved protein (DUF2358). DUF2358 is a family of conserved proteins found from plants to humans. The function is unknown.	3.10629e-43
NZ_CP011304.1\|WP_002734724.1\|3432882_3433077_+\|50S-ribosomal-protein-L33	gnl\|CDD\|177033	CHL00104, rpl33, ribosomal protein L33.	2.51159e-28
NZ_CP011304.1\|WP_002800735.1\|3439294_3440722_+\|glycogen-synthase-GlgA	gnl\|CDD\|234809	PRK00654, glgA, glycogen synthase GlgA.	0
NZ_CP011304.1\|WP_002734613.1\|3427745_3428057_-\|BMC-domain-containing-protein	gnl\|CDD\|132897	cd07057, BMC_CcmK, Carbon dioxide concentrating mechanism (CcmK); Bacterial Micro-Compartment (BMC) domain. CcmK1-4 and CcmL proteins found in Synechocystis sp. strain PCC 6803 make up the beta carboxysome shell. These CcmK proteins have been shown to form hexameric units, while the CcmL proteins have been shown to form pentameric units. Together these proteins further assemble into the flat facets of the polyhedral carboxysome shell. The structures suggest that the central pores and the gaps between hexamers limit the transport of metabolites into and out of the the carboxysome.	1.26093e-45
NZ_CP011304.1\|WP_046662940.1\|3431293_3432706_-\|DUF697-domain-containing-protein	gnl\|CDD\|368297	pfam05128, DUF697, Domain of unknown function (DUF697). Family of bacterial hypothetical proteins that is sometimes associated with GTPase domains.	5.67627e-43
NZ_CP011304.1\|WP_002741693.1\|3428822_3429107_-\|Nif11-like-leader-peptide-family-natural-product-precursor	gnl\|CDD\|369562	pfam07862, Nif11, Nif11 domain. This domain is found mainly in the Cyanobacteria and in Proteobacteria such as the nitrogen-fixing bacterium Azotobacter vinelandii. It is found in Nif11, a protein described in Azotobacter as linked to nitrogen fixation. It also constitutes a leader peptide in Nif11-derived peptides (N11P), which are thought to be post-translationally modified microcins derived from a putative nitrogen-fixing protein. N11P sequences have a classic leader peptide cleavage motif, usually Gly-Gly, which marks the end of family-wide similarity area and the beginning of a low-complexity region rich in Cys, Gly and Ser.	8.57795e-08

>NZ_CP011304.1|WP_008202451.1|3437367_3437985_+|UbiX-family-flavin-prenyltransferase
MKELSKPLILGVTGASGLIYAVRTLKYLLLADYTIDLVASKSAYTVWQAEDQTRMPPEPELQEQFWRSQCGVMEGGKLRCHRWGDVGATIASGSYRTLGMVIIPCSMSTVAKLAGGLSSDLLERAADVQIKEGRKLVLVPRETPFSLIHLRNLTTLAEAGVRIVPAIPAWYHHPQSIEDLVDFVIARTLDQLDIDCVAINRWQGH
>NZ_CP011304.1|WP_046662942.1|3436640_3437384_+|HEAT-repeat-domain-containing-protein
MYDNEILDSSNSSNNPLDGSDPDQAAEIPPDPEEMLSLLTSAHVSERMIAARAFCELRDERAIAPLLEMLNDVCPLVRVSVAYALGRNPSLSAVEPLIDLLARDWNGYVRKGVVWALGNCGDHRAIEPLVHALKTDISAVRLWAASSLAQIAKVNYEDIITVLPPLIEGLRRDLIAAVRSNCAWSIGQLCRELPFNVIYATAIDALIEALVEDEDLGVKEDARGALLKVGDPRGLQLIEELELEGII
>NZ_CP011304.1|WP_046662941.1|3433831_3436060_+|GAF-domain-containing-protein
MEKQPSAIDTELDAQLKEEDSEQFLRSIFNSVQASIFVVDVLENRDFRYVGANPVHECWTGLRSSDIKGKTPEQILPPDDARSVRQHYSDCVRYGTTISYEQYLPFQNIPYWWLTTLTPLRDDNGCIYRLVGTSTNITERKQAEEALRLQAEREQLLGVMQERIRQSLDLDRILQRTVKEVRQFLNCDRVLIYRLFPDHSGMIVVESHAARINSVLGNRIQDPCFNLSSERLENYRRGRIQVIENVHNSGLDPCYRSLLTSLQVQANLVVPIICDNQLWGLLIAQNCQKTRSWQSQEIDLLKQLAIQVGIAIQQAELHQRVKCLNTALESEVQQRTAELQMTLKYEALIGRITEKIRDSLDENHILQTTTRELVQVLPVERAQIELYDPSRSKATIVHEYTTQELICQGITRQISDFPEIYQPLLHKQILQFVDRLPLGNPQIGRVNRCACAIFDDQGFLGNLWLIRPANHIFNSLETNLIQHIATECAIAIRQARLYESSQAQVRELEKLERLKSEFLKTLSHELRTPITSIRLAVETLESLLEYRGIEIDPEDSIGQLLQILNIESQRQSKLVNDLLTLTYLDAESEPPAIEAIDLLSWLPLLVEPFRHLTRERQQQLILDIDGDIPEINTSLCHIERIIAELLTNASKYTPEQGIIRVNVWRADEQILISVSNSGVEIAPEELSRIFAPFYRIPNQDPWRYSGTGLGLALVCKLIKPLNATIDVTSANAVTTFTLTLPI
>NZ_CP011304.1|WP_002770735.1|3433117_3433333_+|30S-ribosomal-protein-S18
MSYYRKRLSPISPSQPIDYKDTELLRKFITERGKILPRRITGLTSKQQRDLTEAVKRARLMALLPFVNQEA
>NZ_CP011304.1|WP_002734724.1|3432882_3433077_+|50S-ribosomal-protein-L33
MASKKGVRLIITVECTECRSNPDKRTPGVSRYTTSKNRRNTTGRLEIKKYCPHCNKHTVHKEIK
>NZ_CP011304.1|WP_046662940.1|3431293_3432706_-|DUF697-domain-containing-protein
MTVRLGKPILVTGIGITIAFTLGETLNSTLSEVGSWGILGAIALGAGIWFWQKPNAKIDFSPPTPLSLEKVKQAISKAEKIINYLAKEDPDQDLTPLKTTLTQLNQEFSRQDLKIAITGARKTGKTALKKLLESGNFGESIAFLETEPLLTLDSTANQQKSLASDLVLYLINGDLTDSEWQILQQFDRMHQRVILLLNKQDRLPAETREEILLSLKQRLKETIPAHHILAIAAAPEPLKVRQHQSNGEIKEWTEPQTVVIAPLDNHLRKIIEQEKQQLVLGTIWRQALELAKETKQLLNQSRRKKALPVIEQYQWIAATATFANPLAALDLVLAAATNAQMLVDLGAIYQQKMSLEQAKTAMTTLGKMMVQLGMVEVTTQALGTILKGNAITYIAGGTVQGIGAAYLTRLAGLSLIEYFQEQEINEQLNNDWNWTSLQNKVKQVWEQNQRLAFLQDFVKQTSARWSAFSG
>NZ_CP011304.1|WP_046662939.1|3430897_3431284_+|DUF2358-domain-containing-protein
MDIIAILQQDYQRFPLDQTYDIYADDVYFQDPLNQFRGIKRYQEMIGFMGQWFQAIKMDVHAIEQQGNIINTRWTLHWTTPLPWRPRIAISGRSQLTLDDNNLIISHIDYWDCSRWDVLRQHLPFPSS
>NZ_CP011304.1|WP_046662938.1|3429492_3430833_+|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB
MNKSPRRYHITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQAKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVATEPIHIMEDITKPRRDSNITAWVNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMEQLGQQGYKEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHPRYFTERLIKACQELPKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRDLMPDAAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDNQLSEQVKSDRLQRLNHLVATKAAERSQRYLGRIEEILVEDVNPKDASQVMGRTGGNRLTFFTGNIEELRGKFVKVKITEVRPFSLTGVIF
>NZ_CP011304.1|WP_002741693.1|3428822_3429107_-|Nif11-like-leader-peptide-family-natural-product-precursor
MSKNQVFDFFALAAKNEELGQKMRSTQDPQQLLEIARSQGFDFSRPELEAALKSLHESPDFFQKLAHAVLEVFSPNHDNYPSIGVQPYEGEIDR
>NZ_CP011304.1|WP_002734613.1|3427745_3428057_-|BMC-domain-containing-protein
MPIAVGMIETLGFPAVVEAADAMVKAARVTLVGYEKIGSGRVTVIVRGDVSEVQASVAAGVENANRVNGGQVLSTHIIARPHENLEYVLPIRYTEEVEQFRSY
>NZ_CP011304.1|WP_002800735.1|3439294_3440722_+|glycogen-synthase-GlgA
MRILFVGAEAAPIAKVGGMGDVIGALPKVLRQLGHDVRIFLPYYGFLAEKMDIPSEPIWSGFAMFQDFSVYETVLPDTDIPLYLFGHLAFSGRSIYGGEDEAWRFTLFANGAAEFAWNYWKPQVIHCHDWHTGMIPVWMHQDPDISTVFTIHNLAYQGPWREALEKMTWCPWYMQGDNTMAAAVQFANRVTTVSPTYARQIQTPIYGENLEGLLSYISGNLVGIVNGIDTEVYNPAKDVYLKQNFTPETIEKRLANKIALQEEVGLQVSRNAFVMGMVTRLVEQKGIDLVMQILDRFLTYTDAQLIILGTGDRYYETQLWEMTSRFRGRMSLHLLYSDALSRRIYGGADALLMPSRFEPCGISQLMAMRYGCIPMVRRTGGLVDTVSFHDPIQERGTGFSFDRYEPLDLFTCMIRTWESFRYKQDWQKLQQRAMTQDFSWYKSALEYLKIYKQITGQSDQLSDEEKDKFVALTSS
>NZ_CP011304.1|WP_046662944.1|3440771_3441392_-|VWA-domain-containing-protein
MASESVVQDRDYTLIIDKSGSMSTADKPSEKTRWQIAQESTLALARKCEEIDPDGITIYLFSGRFRRYDNVTSDKVTQIYQENEPMGRTDLAAVLQDALNNYFQRKTAGKTKPNGETILVITDGEPDDRKAVMRQIIEASRKLDSDQELAISLIQVGHDRQATEFLKALDDQLESAGAKFDIVDTITIDDMEDMTLAEVLLNAITD
>NZ_CP011304.1|WP_002782757.1|3441586_3441919_+|TMEM165/GDT1-family-protein
MTDSKSIASTEKKPDQPPSWSFWTVFSSTFLTIFFAEIGDKTQLATLLISAESQSPWVVFAGAASALIATSLLGVLIGYWIARRLSPKTLDIGVAILLLLITGLLIGDIL
>NZ_CP011304.1|WP_046662945.1|3441998_3442274_+|TMEM165/GDT1-family-protein
MNWQLFGLTFITVFLAEIGDKSQLVAIALGGSSKSPKAVFFGSITALICTSFLGVLAGGSIAQLFPAKILKAIAAIGFALLAVRLLWPDSD
>NZ_CP011304.1|WP_046662946.1|3442696_3444013_+|urea-ABC-transporter-substrate-binding-protein
MSNLGRRKFLLYGSAALGTSILLKACGGNQSQTPTASPSPAASPAPASGETIKVGILHSLSGTMAISETSVVDAEKLAIEEINAAGGVLGKQIEAVVEDGASDWPTFAEKATKLIDQDKVATVFGCWTSASRKAVLPVFEAKNHMLWYPVQYEGQECSRNIFYTGAAPNQQIEPAVTWLLENKGKKFFLVGSDYVFPRTANTIIKEQLKAKGGETVGEDYLPLGNTEVTPIITKIKQALPDGGVIFNTLNGDSNVAFFKQLQAAGLTPDKYPVMSVSVAEEEVKQIGKEYLLGQYASWNYFQTVDTPANKKFVEAFRAKFGQERVTNDPMEAAYIMVYLWKQAVEQAGTADDLDKVRAAAVGQKFDAPEGPVQMFPNHHISKTVRIGQVRDDGLFDIVWSTPGVVDPQPWNQFVPETKGFACDWTDPAKGGKFKMEKS
>NZ_CP011304.1|WP_046662947.1|3444107_3445268_+|branched-chain-amino-acid-ABC-transporter-permease
MSALLEGLFNGISIGSVLLLAALGLAIVFGLMGVINLAHGELMMLGAYSTFVVQNIFKGFGSPLFDTYVLFALPIAFLVSGLAGLLLERGVIRFLYGRPLETLLATWGVSLILQQFVRSVNGLLVISLIVFCLLFFGAMTLLSRRLDWERIRNLAIGVTLPLSLAIAGLLGYLLSFNPVLAKPWFSARNVDVTAPAWLRGGLPLPGFQMPYTRLFIIILTAICLLGTYWFLNKSSWGLRIRAVTQNRQMSACLGIPTNQVDALTFALGSGLAGVAGCAISFLGSVGPNVGQNYIVDTFMVVVVGGVGNLLGTIIAAMAIGVANYLIGSGTFALIFGSVEALKPLTDFFTFFSTTSMAKVMIFALIIAFLQFKPAGIFPPKGRTAEL
>NZ_CP011304.1|WP_046662948.1|3445271_3446426_+|urea-ABC-transporter-permease-subunit-UrtC
MITETITRNESRQREKKKLITEVAVIVGLVVIFALLLPLTLSAFRLRLLGRFLSLAIVALGIDLIWGYTGLLSLGHGIFFALGGYALAMYLNLQLPPGQLPEFFTLYGVTELPFVWQPFYSLPLTILALIIVPAIMAGLLGYLIFRNRIKGVYFSILTQAALLVFFNFFNGQQKLINGTNGLKTDTQTIFGLLVGSDAVQVAFYLLTIVCLLAIYLLCRWLTTGRFGRLLVAIRDDEVRVRFSGYDPTWFKVLVFAISGAIAGVAGALYTVQTGIITPNSMDVAFSIEMVIWVAVGGRATLVGAVVGTLLVRMAQTFLSEQFPEVWVFFQGALFLIVVTVLPDGLLGGIKRLLTHFGFRKTLITYPSIEEAPEVQLEKEELEHK
>NZ_CP011304.1|WP_002777291.1|3446589_3447336_+|urea-ABC-transporter-ATP-binding-protein-UrtD
MTGKILEIENLTVSFGGFKALNNLNFSMDTGELRVIIGPNGAGKTTFLDVITGKVQPTIGRVLFKGRDLRKIPEFAIARLGIGRKFQTPRVYLNLTVRENLDLVSNRNKNVFSTLFGRPPLEDSRKVIGLLETIGLTAKADLPASLLSHGEKQRLEIGQLVAQSPDLLLVDEPVAGLTDEETENVGNLLLNLAESHSIIVIEHDMEFVRQIARKVTVLHQGTVLCEGNMEQIQNDPKVIEVYLGSSEE
>NZ_CP011304.1|WP_046662949.1|3447374_3448073_+|urea-ABC-transporter-ATP-binding-subunit-UrtE
MLHISDLNVYYGESHILRDVDLNINAGEMVCLIGRNGVGKTTLLKTLMGILKPRAGAINYEQQNLINKTSDQRARLGLGYVPQGRDIIPRLTVKENLILGLEALPTRRKNATIPEEIFDLFPVLKPMLSRMGGDLSGGQQQQLAIARALVGEPKLLILDEPTEGIQPSIILEIEAAVRRIVASKGIAVLLVEQHLHFVRQADRYYAMQKGGIVASGFTSELSQEVIQRFLAV
>NZ_CP011304.1|WP_046662950.1|3448094_3449318_+|NAD(P)/FAD-dependent-oxidoreductase
MTQIVVIGGGAAGFFGAIKAAESNPKAGVTILEAAKEPLGKVRISGGGRCNVTHHCFDVSQLVNYYPRGGKALRGAFSRFQPQDTIKWFELRGVKLKTEADGRMFPSTDNSETIVNCLRESATFAGVNLRLNSPVKSVKKQEESFLIELKREEQIRADKLLIATGSSPFGYRTAQDLGHSLVSPVPSLFTFQIADPRLQDLLGVTVDKVRVRLGGSKLEQIGPLLITHWGVSGPAILKLSAWGARVLHEHHYRMPLIINWLGDYHPEKLREIILQTKSEYPKRKLFNYCPFEQLPKRLWQSLLSYLTVNAETPWAELSKNTLNRLMTELQQGEYQIKGKGVFKEEFVTSGGVNLQEVDFKTMESKICPGLYFAGEVLDIDAVTGGFNFQSAWTTGYLAGQAMGNRRV

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Crispr_ID: NZ_CP011304_20

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011304_20

3542009-3542117

Orphan

Consensus_repeat	Method
CCCTGAGAGAAGCCGATACTTCCCCCATTGTCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011304_20

>merge|NZ_CP011304|20|3542009-3542117|CRISPRCasFinder
CCCTGAGAGAAGCCGATACTTCCCCCATTGTCCCCAGAATCGAGAAACACAGCGAGAAAACAAGCGAGAGTGTTGCCCTGAGAGAAGCCGATATTTCCCCCATTGTCCC

>NZ_CP011304|20|19|3542009-3542117|CRISPRCasFinder
CCCTGAGAGAAGCCGATACTTCCCCCATTGTCCC	CAGAATCGAGAAACACAGCGAGAAAACAAGCGAGAGTGTTG
CCCTGAGAGAAGCCGATATTTCCCCCATTGTCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011304.1\|WP_071846486.1\|3526706_3527255_-\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|379311
NZ_CP011304.1\|WP_080949817.1\|3550334_3554279_+\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|380293
NZ_CP011304.1\|WP_046663013.1\|3532514_3533465_+\|prolyl-aminopeptidase	unknown	unknown	gnl\|CDD\|130316
NZ_CP011304.1\|WP_046663024.1\|3563445_3564051_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP011304.1\|WP_046663011.1\|3530158_3530893_-\|D-alanyl-D-alanine-carboxypeptidase-family-protein	unknown	unknown	gnl\|CDD\|367124
NZ_CP011304.1\|WP_046663023.1\|3560935_3562585_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_002754005.1\|3529622_3529967_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046663021.1\|3547357_3550246_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|350769
NZ_CP011304.1\|WP_046663015.1\|3537112_3538126_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046663827.1\|3543568_3543889_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|367035
NZ_CP011304.1\|WP_103672744.1\|3544769_3545093_+\|type-II-toxin-antitoxin-system-PrlF-family-antitoxin	unknown	unknown	gnl\|CDD\|236638
NZ_CP011304.1\|WP_046663016.1\|3538375_3539308_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379165
NZ_CP011304.1\|WP_103672714.1\|3544011_3544706_+\|IS1-family-transposase	unknown	unknown	gnl\|CDD\|224576
NZ_CP011304.1\|WP_046660474.1\|3545507_3547004_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|290319
NZ_CP011304.1\|WP_004269039.1\|3562803_3563346_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046663017.1\|3539536_3540589_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|377294
NZ_CP011304.1\|WP_046663018.1\|3540581_3541676_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|223510
NZ_CP011304.1\|WP_080949779.1\|3535204_3536155_+\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NZ_CP011304.1\|WP_046663012.1\|3530924_3532316_-\|NAD-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|223358
NZ_CP011304.1\|WP_046663022.1\|3554687_3560033_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|350681

Protein	Function_ID	Function_description	E-value
NZ_CP011304.1\|WP_071846486.1\|3526706_3527255_-\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|379311	pfam13646, HEAT_2, HEAT repeats. This family includes multiple HEAT repeats.	2.79444e-05
NZ_CP011304.1\|WP_080949817.1\|3550334_3554279_+\|N-6-DNA-methylase	gnl\|CDD\|380293	NF033451, BREX_2_MTaseX, BREX-2 system adenine-specific DNA-methyltransferase PglX. This protein, PglX, is a site-specific DNA methyltransferase associated with PGL (phage growth limitation), a type 2 BREX (bacteriophage exclusion) system. The phage resistance appears not be restriction, but does manage to inhibit phage replication.	1.11907e-08
NZ_CP011304.1\|WP_046663013.1\|3532514_3533465_+\|prolyl-aminopeptidase	gnl\|CDD\|130316	TIGR01249, Putative_proline_iminopeptidase, proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.	9.59131e-156
NZ_CP011304.1\|WP_046663024.1\|3563445_3564051_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	3.73846e-05
NZ_CP011304.1\|WP_046663011.1\|3530158_3530893_-\|D-alanyl-D-alanine-carboxypeptidase-family-protein	gnl\|CDD\|367124	pfam02557, VanY, D-alanyl-D-alanine carboxypeptidase.	2.74612e-58
NZ_CP011304.1\|WP_046663021.1\|3547357_3550246_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|350769	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA. In bacteria, RapA is an RNA polymerase (RNAP)-associated SWI2/SNF2 (switch/sucrose non-fermentable) protein that mediates RNAP recycling during transcription. The ATPase activity of RapA is stimulated by its interaction with RNAP and inhibited by its N-terminal domain. The conformational changes of RapA and its interaction with RNAP are essential for RNAP recycling. RapA is part of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.34643e-61
NZ_CP011304.1\|WP_046663827.1\|3543568_3543889_+\|TolC-family-protein	gnl\|CDD\|367035	pfam02321, OEP, Outer membrane efflux protein. The OEP family (Outer membrane efflux protein) form trimeric channels that allow export of a variety of substrates in Gram negative bacteria. Each member of this family is composed of two repeats. The trimeric channel is composed of a 12 stranded all beta sheet barrel that spans the outer membrane, and a long all helical barrel that spans the periplasm.	0.00193739
NZ_CP011304.1\|WP_046663016.1\|3538375_3539308_+\|ATP-binding-protein	gnl\|CDD\|379165	pfam13401, AAA_22, AAA domain.	3.34274e-07
NZ_CP011304.1\|WP_103672714.1\|3544011_3544706_+\|IS1-family-transposase	gnl\|CDD\|224576	COG1662, InsB, Transposase and inactivated derivatives, IS1 family [DNA replication, recombination, and repair].	3.29419e-31
NZ_CP011304.1\|WP_046660474.1\|3545507_3547004_+\|IS5-family-transposase	gnl\|CDD\|290319	pfam13586, DDE_Tnp_1_2, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.0941e-34
NZ_CP011304.1\|WP_080949779.1\|3535204_3536155_+\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	5.35977e-40
NZ_CP011304.1\|WP_046663017.1\|3539536_3540589_+\|metal-dependent-hydrolase	gnl\|CDD\|377294	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase. YdjM is a family of putative LexA-binding proteins. Members are predicted to be membrane-bound metal-dependent hydrolases that may be acting as phospholipases. It is a member of the SOS network, that rescues cells from UV and other DNA-damage. Expression of YdjM is regulated by LexA.	2.74658e-22
NZ_CP011304.1\|WP_046663018.1\|3540581_3541676_+\|ATP-binding-protein	gnl\|CDD\|223510	COG0433, COG0433, HerA helicase [Replication, recombination, and repair].	1.48719e-08
NZ_CP011304.1\|WP_103672744.1\|3544769_3545093_+\|type-II-toxin-antitoxin-system-PrlF-family-antitoxin	gnl\|CDD\|236638	PRK09974, PRK09974, type II toxin-antitoxin system PrlF family antitoxin.	5.31394e-55
NZ_CP011304.1\|WP_046663012.1\|3530924_3532316_-\|NAD-dependent-malic-enzyme	gnl\|CDD\|223358	COG0281, SfcA, Malic enzyme [Energy production and conversion].	0
NZ_CP011304.1\|WP_046663022.1\|3554687_3560033_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|350681	cd17923, DEXHc_Hrq1-like, DEAH-box helicase domain of Hrq1 and similar proteins. Yeast Hrq1, similar to RecQ4, plays a role in DNA inter-strand crosslink (ICL) repair and in telomere maintenance. Hrq1 lacks the Sld2-like domain found in RecQ4. Hrq1 belongs to the type II DEAD box helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	2.49527e-63

>NZ_CP011304.1|WP_046663018.1|3540581_3541676_+|ATP-binding-protein
MFNKQQKPLPTAVLRATNSPSDESSPPSGILLGDNCYWNPGHLPNGHIVAIGASGSGKTQTLKAIAYSLRQTYPDIQLFIIDFHGDQEIIGETCYPLHMASSHGINPLIVNLDAEGGGPHLQAIAVTTTLKRSLQLGPNQEGLLLEILQFCYDRRGISQEQPTSWTREAPNFTDLQQEIESRVESGCKESQKLKLKLIATFTYGVFCRPQPNFTEKHIRIDLSKLPPEIGAIAAESLAWQLMNQHRLTGEIEGKLPRTYLFIDEAKELRKSRACDRIIADGRKYGLGLVLASQSERHLSDDVIGNSSTKIVLPVDQSEVKRVAAKFRFAEKKVAELVPLTALCRFGKQAEVTSIFPYHRRVEDG
>NZ_CP011304.1|WP_046663017.1|3539536_3540589_+|metal-dependent-hydrolase
MMSVTHIAFSVALTSITLGTANPEILGIAAVAALLPDIDTGKSSIGRLLFPVSSWLEKRTVHRGITHSFFASGVVTLAAYPLALLGYSQLWYGLILGYFFGWFADVFTKSGVQAFYPGRGRMIIPRNPRLRLATGSNAEWFLLFVLVVVSVMSISINSGGGLIRGFNQVLGLPSGAIETVNEDASRYLLRVRVQGRNAITEQPVDATYEVIEPLTVSDLLVKDEGGTLYRLGSSQESQIIASRIRVERVAPVQVKIENIVLEDEYLDRLANLTEPFGVAQGNRVYLTGTLTIADGSGLSLPSHADRFDTITLQPGHVAYARLTAASPQYVIDKLGEYSVSGHLIARIINV
>NZ_CP011304.1|WP_046663016.1|3538375_3539308_+|ATP-binding-protein
MIERHRRRLANGEERVYTYGVGADGERQSLSIRSVDGSVSISCYRGAEKERVVAALLANASLLVVGEDGAGKTFLAERVIEDLWGRGFPVAAPAIGTVKQMLLEIAGDLGVDTETLEGKPMTAQQLQETIAEWLEGNVAFLVMDNAHRFPVSLRCWLEKLHLQGQPILLLATYPPARDIFLKLPRIELEALPERAIREIMEGEAVSLGLQVTPGKLADWQQRAIGNPMLAKRVVKEEYLGLEGNNYDHTQWIDGTPLLIAVLMCFMILRFLGLGFNNTSLYLIGGILTVAVGMVRLMIYSLPRQSNRLGR
>NZ_CP011304.1|WP_046663015.1|3537112_3538126_-|hypothetical-protein
MPERLLRLDDLKTLTSPDGVAALFHRLGYDAEAQPLNLEDLQLTSRSAEAVYDAYLIADQGNGGLQVLLFQLQPEEWSSPSVASSRMKAIASQVGRRDTEFLLLATKDYNQLMLVNPRKSFDDKMNLKASIRKLLIDRTNPTAYDLDRLEAIAVRDKSPQELYKVQCEAFDVEKLTKSFYRGYKQLFDQVQQAVKLHNDHPYFEDSDRLHQFSQRLLGRIMFLYFLQKKEFLAGDRRFLTTQYKHLRPDPDDTEYYTSVLEPLFFQTLNQQRPNLDSKWGKIPYLNGGLFDRIIIKIKFKPGKRLYLAIDRTQWKDKNLFMVAGIIERRAIDISKNL
>NZ_CP011304.1|WP_080949779.1|3535204_3536155_+|IS630-family-transposase
MRPYSVDFRQKIIDVWKKEKISIRGLAQRFDVAKSFIQKLLKQHKETGDIRPRPQGGSPPTKLNSEQLIILIEIIESNNDATLEELSDLLYEKTQVKVSRATLGRLTQKLNYSFKKKTLHAAEKESDRVQQKRVEYWSQVREIEASKLIFIDESGVNLALLRLYARALIGRRDRGRKPQKRGRNISIISAISLEKVVASVNIYGAVDAVTFEGFILKEVLPKIKEGDCLLMDNAKIHLGEMVREIIEQEKARLIYLPPYSPEFSPIENFWSKVKAILRKLKARTYKDLIEGIELAMLEVTQKDIRNWFTHCCYCTS
>NZ_CP011304.1|WP_046663013.1|3532514_3533465_+|prolyl-aminopeptidase
MTRELYPAINPYCTGYLKVSALHTIYYEEVGNPQGKPVVFLHGGPGGGIEGIYRQYFDPQKWRIVLFDQRGCGKSTPHAELRENNTWLLVADIEKLRELLKIERWVVFGGSWGSTLSLAYSQTHPERCLGLILRGIFLLREKELKWFYQEGTSYIFPDIWQNYLAPIPPEERGDLLAAYYRRLTSDNPQIRLEAAKAWSIWEGSTSKLIPADNLIERFGQDNFAEAFARIECHYFVNKGFLETDNQLIENVDKIRHIPAVIVQGRYDIVCPMISAWELHQAWTEAEFIIVPDAGHSMTEVGIRSALIEATDKFVNL
>NZ_CP011304.1|WP_046663012.1|3530924_3532316_-|NAD-dependent-malic-enzyme
MVHLTPNPSYSLSLKIEIPNQAGTFASVLNAIADVGGNLGQISLIERNLKISTREVMVDAASTDQAEQIIAAVKALPDVKLLKVSDRTFDLHRRGKISIESRIPLTSQDDLAMAYTPGVGRICTAIAHQPELVYSLTIKGNTVAVVTDGSAVLGLGNLGPEAALPVMEGKAMLFKEFAGIDAFPICLATQDPEEIIATVKRIAPVFGGINLEDIGAPRCFEIEKRLRAELNIPVFHDDQHGTAIVSLAALINALKFVKKSLDTVKIVINGAGAAGIAIATLFKTAGATDIILCDSHGILSQQRDDLTPEKQAWAVAASGKLGDALKGADVFLGVSAPGVLTPEMVKGMAKNAIVFAMANPIPEIQPELINDLVAVVATGRSDYPNQINNVLAFPGLFRGALDCRARAITDNMYLEAAKAIASLITPANLDRENIIPSVFDGRVVTAVAAAVQQAARQDGVAGE
>NZ_CP011304.1|WP_046663011.1|3530158_3530893_-|D-alanyl-D-alanine-carboxypeptidase-family-protein
MKPIDDIPEALRDNQYRKTTNPNGLIAIASGLLALVGTGLIAIAVLNRPPASVKKPVINPSPLIKATPSPIENILGHLPYQEAPETELAPITGDGAMRLRKAAAKAFIQMQSDARRSGVILMPISAFRSKATQEKLFFEVKKQRNQQTRKRAEVSAPPGYSEHHTGYAIDIGDGRAPATNLSSSFANTAAFRWLQNNAAQYSFELSFPENNPQGINYEPWHWRFVGDSHSLETFYKAQQLGKQK
>NZ_CP011304.1|WP_002754005.1|3529622_3529967_-|hypothetical-protein
MSKPVEYLTNEQGERVGVLLDWNTYSRFANSLGLDEDCLIGLSVDELKALASCQLSLVEQTRLDDLVTRNAESLLCADEVAELDELLAKTDQLTILKTRARYTLKCLEQGTTAA
>NZ_CP011304.1|WP_071846486.1|3526706_3527255_-|HEAT-repeat-domain-containing-protein
MKLSTESLDLIIRTLAKRLFTDKNPSIRIKAAQSLAKLATEKAIPTLCQALEIEADLNVSFAIMDAIIVISNLQSFNPMSETPKYDLRGANIANFADTVQGDQKAVQHNYATPQNLAEAAQEIQQFISQLTQTYPTNTEIEKQTFVAQVDAKIKKNSQLRNILITGGIELIKILCPPLGIPI
>NZ_CP011304.1|WP_046663827.1|3543568_3543889_+|TolC-family-protein
MERQRAAKRSQLGEQVLTLVIAYETAGDRERAILAQLSNHDLLTRITEIDYRLGGSSTETYLTRIAQREQLEIQWNRYRLERETAKRQLLSLTGFSTPETTGETTG
>NZ_CP011304.1|WP_103672714.1|3544011_3544706_+|IS1-family-transposase
MQCPECKSTHIRKNGINKQGKQNHICVTCGRQFINNYEKQKGYDEKTKRECLTAYVNGMGFRGIERLKGVHHTTVINWVKSVGELLPVAYDPETIPEVGELDELETFVGSKKTKFWVWTAVDHFKKGILGWVIGDHSSETFRPLWELVKSWGCYFYVSDGWSVYPCFIAEGDHIISKTYMTRVEGENTRLRHYLARLHRKTLCYSKSTEMLGYSIRLLIHYLKFQEVPIPY
>NZ_CP011304.1|WP_103672744.1|3544769_3545093_+|type-II-toxin-antitoxin-system-PrlF-family-antitoxin
MALWPESTLTDRYQTTIPDSVRKALGLNKRDKICYNIQPDGKVWISRADGTEENDPVLGKFLNFLAQDMEQNPQHIQPISSNLVNHVQYLVSGVALDLDAPLLDEDE
>NZ_CP011304.1|WP_046660474.1|3545507_3547004_+|IS5-family-transposase
MYRKSELPSTPPENFELPFEGKLSQDNRWVIMANLIPWSEFEAEYASLFSEEMGTPAKTFRTALGALIIKEKLGTSDRETVEQIKENPYLQYFLGFSSYSNEPRFEASMLVHFRERITLELINKVNRFMVKNSREIKEEENTEKKLESETQSQPENRGKLILDASCAPADISYPTDLNLLNQGRKQTEKIIDILYETLKGKLVQKPRTYRLLARKSYLEVAKKRKPTVKQRRKALKRQLQYLKRNLDHIEQLLAEGASLQSLKKRDYKLLLVVTEVYRQQLWMYQNNKQSIEDRIVSLTQPHIRPIVRGKAGKPVEFGAKFSASCIDGYIFLDRISWDNFNESGDLKAQIEAYYDYTGYYPESVHVDKIYRTRENRAWCKERGIRISGPPLGRPAKNVSKEQKKQATDDERIRNCIEGKFGQGKRRFSLGKVMAKLPHTSFSAIAITFLVMNLSNLLRQVFWAFLCLKWKNSTFSRSMIRISYNLKINQQLKLMLVAK
>NZ_CP011304.1|WP_046663021.1|3547357_3550246_+|DEAD/DEAH-box-helicase
MLASSRLQASRSNPTGLTSPPTVGSIVRCRNRQWVVLPSEREEVIILRPLSGSEEQICGIYTVLGEKIESATFSPPEPQTLRDHEAGRLLLDAARLSLRSGAGPFRCLGRLSVRPRPYQIVPLLMALRQETVRLLIADDVGIGKTVETALIARELLDRGDIQRIGVLCPPQLCDQWQRELKQKFNIDAVVIRSGTVAKLERELPSGNSHIFSYYRHIIVSLDYAKSDRRRASFLAHRPDLVIVDEAHTATQSKEGANQQRHQLVSKLAENPDQHLILLTATPHNGIETSFLSLLGFLKPEFSTFQLDALSEKQRAELAKHFIQRRRADVQDWMAENTPFSIRKSIEYPYQLSNEYRELFDRVFDFVRGLVRSVDESLSHAQKRGRYWAALAIIRCVMSSPAAAIATLSRQADKNANLDDLAEKTRDESVEDIDRVASPYVYDVTEEELSVDSTPTALVEQSIRTYPDSARKRLRDFARAAEQLTSKKDQKLQYTLKIVKELLTEGYNPILWCRYIATANYYAQALKAEFVGKRGVQPRVIAITGELSEDEREIRLDELKSCPQRVLVATDCLSEGINLQEHFNACCHIDLPFNPNRLEQREGRIDRYGQTTPQLKCILLYGQDNPVDGVVLDVLLRKAVTIHRNLGITVPIPMDSATVQEAIFQSLFERSTTVRQLSLFDSNPALASLHQDWEKAKEKEIQNRTRFAQRSIKPEEVQQELNESDEILGNEADVERFVRNALDRWEISLVKKKVGWQLSRIPDCLEIENRPRTIAFTTPVAEGVEYVGRNHPLVEGLARYLFEEALESSHSIAESSSPPFASRCGVTVTNAIAKPTFILLLRSRLLLTGRNTRPLLAEECLARGFTGTPDRPCWLSGTETLALFDTVVPTTDISQEEKREWIEMVIDRLEDLTPSLTEIATERAETLLASHRRVRRFTGEGMLQKVEPQLPMDILGVYILLPP
>NZ_CP011304.1|WP_080949817.1|3550334_3554279_+|N-6-DNA-methylase
MTTEIASGEKDGQSNIHFGLERSIKLEDEIAFVWGEAKDQWQIFQRRLKRLGESDTGTSTTREFWVIPLLKLLGYQPVLQERAETVDGQTFAISHRAGFGDGTGDLSPLESPPVHIVSCKQSLEQRPPSGRPRLSAHALVQEYLNRTEHLWGVVTNGLRWRLLRDCSLMTRLTFIEFDLEQIVQNENYAEFCLFYRLFHRTRLPWGVEDVDSCFLEVYHQDALEQGGRVRERLRDGVEQALLLLGTGFLQHRQNQRLREAINSRELSERDYYRSLLLLIYRLLFLMVAESRNLLLAGEDEGKARIYSEYYSVFRLRALAERKSYLREGFQDNWQGLRVTFSLFDESWRGELLGLSPLNGDLFGSNSLKLLEDLAIDNHDLLLAIRHLSLYENRGQLRRVNYAALDVEELGSVYESLLDFTPRIVNESVSYRFLLVIGSDRKTTGSYYTPPALVGQLIKSALEPVIADKLKGKESPEDKEKALLSLTVCDPACGSGHFLLAAARRIGKELARVRSGEDQPSPEEIGKATRDVIQNCIYGVDLNPLAVDLCKVALWIEGFCKGFPLNFLDHRIKCGNSLVGVMDLDVLKEGIPDEAYKAVTGDDKSLATKLKKSNKEQCKVPKGQLSLFQDIDFEVRQGNYAEGSRHLNRITDSTPAEYHRKQERYEELRADSQWWQDFSACNLWTAAFFMPLTEANLQLIPTTEALRRLLREAEQRQQRNPLQGSLFADGETSSSTPFSVTRIVEAANNLAREQRFFHWCLEFPEVFAEGGFSCVLGNPPWELLQIAEKEFFASKDESIANEKDSSKRKKQIQQLAKTNPQLLQMFENTKHDADAQNKFIRESGRFLLTLRGKINTYSVFAELVKNLMSSQGKSAVIIKSGIATDDSNKDFIQNVVSNCLLTSFFDFNNEDYIFKDIEHTVSFAILTLSNIPCSQVYFASQLRNLNQLKNPLKLYGLSSDEIRLFNPNTLNLPIFQSIEDLKLVRKIYQKVPVLSNLKKKENHWKAFFRQGLFNMTSEREIFWIESELITNNFNLKRNVYFKENIIYLPLYESKNTDQYNHRFAGFEGIKEEERYRNRPPINEANQQQLANVTWQITPRYWVQNQSVDLKIPEQWKYNWLIGFRNAINAFADSRSVRFTLIPKCGVGNSMPLIFSEEKPKMLCCLVANFNSLILDYVAKQKASGGNLNFYVVKQLPIIPPNWYTSEDIEYISDRVLELVYTAYDIRPFAEDMGYYGEPFIWDEDRRAKLRAELDAKYAKLYGLTRDELRYILDPADVYGEDFPSETFRVLKNNEMKKYGEYRTRRLVLEAWDSMK
>NZ_CP011304.1|WP_046663022.1|3554687_3560033_+|DEAD/DEAH-box-helicase
MILKDLLAGGIPAITATSTFIGMGMLPQKLNANGVDTLTDEQIEALFSNIPADWSFSDLAERVFDESTVSESLADRLIAYIDQKHGGESLTPEPRESSEPEGDSPRKFDIFTLRDEIVEDYRGYIESFLSIKDKRIKEFVNRELDRGQLWKDPLVQLNPPYKRGATVGQLIGRGILHQDCDRYFPNFTFFEHQETAFQLARQNLPYVVTTGTGSGKSLTYVVPIINDILENPTLQGVRAILVYPMNALINSQEEEFKKFLENIPDSPIKVAKYTGQESLTEKAEIQNNPPHILLTNYVMLELMLTRVHEDKLVASPDLKFLVLDELHTYRGRQGADVALVIRKLKRRCDKSLVCIGTSATMSTEGDRADRKRTVAEVASKLFGVEISPDRVIDETLERAISRPDPTVAELQQSLQQEVSPEEEQTDEAFQQHPLVAWIEMNLGLEEEDGYLKRRTPISLKEAADQLAKLTKIDTGVCLDRLREMLLWSGRLNASKTKNSREVRGLPFRLHQFISQGGSVYATIEPHERRELTLEGQYRTTRDRLLFPIVFCRECGHDYYVVRYDSEKYQITPLIPTAIDEENDEDITEGYLTLDEPDLWDINDEERLPDTWFNLNKSGRKVKKDFAKFIPRELYVYPDGRIVTGAFSTDDPIQPVRCWFIPKPFLTCLNCGVVYDRKTTEYRKLSRLSSEGRSTATTLLCLSTVNRLKLNLNIQETAAKILSFTDNRQDASLQAGHFNDFVQTSFLRGSLNRALQNHGYLTHAELAAKVVNAMGLTQEQYAEQPVTFGTGKTRNEKAFEDLIQYRLYDDLKRGWRIVQPNLEQSGLLAIEYPDLENNCQNLAPWQKYPHPVLVSATPEQRLKAASFLLDHLRKNLALDADLLQSNRLNELQRRVNQALNQAWKFDDHEYLPPATKASHLNNPRSGATVKLTAKSKVGKYLRSEQLWGHKVTEAEYESLIVSLINALADSGYLKREGTEIQLRVDSMVWKAQKVDRVKLDPTVRKLRDSLLEEREVNAYFQNFYDRQATTIRKMEGREHTGQVANDKRQEREEKFRKGELAALFCSPTMELGIDISDLSIVHLRNVPPSPANYAQRSGRAGRGGQEALVITYAAYGNGHDQYFYNRQAQMVSGVVVPPKLELANPDLVKSHLYSLWLSYTGVDLGNSMNQILDLEKDGYPIKDGIWQQLKLSSNKLNLCWDDARTILGDVYCQGDLAQTNWYSADWLKQTLENASDEFHNTCNRWRRLYREATEQLQKARETIDRAVRGGVTDEEKKKANVSEEDAKRQRDLLVGSDRKGRSQSEFEFYPYRYFASEGFLPGFNFPRLPVRGFIPAGNKGEFISRPRAVAIRELAPRNIIYYEGSKFQIARTRISPQGEQQFRRISACSRCGYFHADTEANRDTCENCGARLQDRLYHVLVLDTMITRRRERITCDEEDRLKYGYILTTHFRYDSHKRRKALVTAADSTELLKISYGETASIRRINRGLRFNQERGFRLDTAKGEWLDAKQDNPSSNSQAGISLMVEDTRNILVVEPCWGKADLAPEFLITFQHALARAIQAHYKLEAEELASEKLGEGGYILFWESAEGGAGVLAQILDNPTSFQNLAQQALDICHFKQDKPDCAQACYECLLSYQNQFDHPYLNRHLIKDFLEQLAGSRLSFSQEGDREQSYQILLQQSDPNSEYEKVVLKAIYEQGLPLPDRAGVYIPDADCKPDFIYENLKIAIFCDGSVHDHRDQQEQDRVKRENLKWHARYKVFSFNYQSDLQEQIDKLQAMLSPT
>NZ_CP011304.1|WP_046663023.1|3560935_3562585_+|hypothetical-protein
MSNVKIRLNFTTNLFTGILITFGIAISGIISQNSAVMATNIDNRITPNLSKTTKKTVAICIFGFCVDTPSLPTQIQNTIEQGASSIILQQFRSFLSNEIPISGTEHKLYPVTYSLFGEAFLPSKLYLNHFKDSHFIQSGDYQIPAHFYCTHVYTFNGSGNRYRLAKINGKMSQALSALYKRASLSEVPVQDIQKLSWSIQTGVSYHKLPESSQILVDQLIPEYRQNMNDSFMTNTINFYDNLSRQFSLPSLDKFLSNLGEIGTLVKALLRAREQVINTRLDYSTLANSFVIQQNLNLMGGIESTPWSQVNEQLYLRLIAPQGAMNDGIIQVRILRTNKQSKKVTSHRLFAMNTDINSFKLLTVNDNSVSSLPTAGELRNIISQLIGIPEANGHQAITASILSPPEIMSRTDRLGALQATKEFKPGTVGYGVYKAIEALYYGNEFLGGYGAFANKYSAEIGAFFQRSDIQELMKQPINSQANLLVAKAEFDYWTFVQNNPRSTAEDKEGARIALKFSPEVRAKLQVYYANGDYTRANLLIIKNYPGIIFH
>NZ_CP011304.1|WP_004269039.1|3562803_3563346_+|hypothetical-protein
MTSLKKIVNLLNCFLCLNLLNLIAYKPMLGQLFIASPILKNSDDKQILEEPKLVLTRNKKYAEYEGQLVAPGHGNQNYKIIRIDTTNFITGGTLRIDIQVGSGQSQASFDLFAEDAVIPIAGRPQQSLAGAYDISPDSGTSLTYKFDKGEVFQFGATGNWFSPKGSRNSYRIKAYVIPKI
>NZ_CP011304.1|WP_046663024.1|3563445_3564051_-|CPBP-family-intramembrane-metalloprotease
MKLLSSSQITTSVVISFLYILPVVLILTKVISFSDRFLVLTITGALIIGLAMLNEIAPADLGFNHQNLLPAIKDILPVTIISSVLMIVFYLNHGMRIDNTGIPWYFYVFYISLSSPLQEFLYRSYLFNRLAQIQLNQGSIIIITAILYSFAHSIYQDLLTVLLSLIIGLYWAYHYNRFKNFYSITLSHTILGIIAILTGSV

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Crispr_ID: NZ_CP011304_21

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011304_21

3599679-3599861

Unclear

I-D,II-B

Consensus_repeat	Method
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CRISPRCasFinder

2 spacers

cas2,cas1,cas4,cas6,cas3,cas5

The CRISPR arrays of NZ_CP011304_21

>merge|NZ_CP011304|21|3599679-3599861|CRISPRCasFinder
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTGAATATTGGATTGTTGAGGGGTAATTATGGCTGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACACGTCTCCGGGTCAACCCCGGAAGTGTCACGGTACGCTGTTTCAATCCCTAATAGGGTTTAAGATTAATGGTTCT

>NZ_CP011304|21|20|3599679-3599861|CRISPRCasFinder
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TGAATATTGGATTGTTGAGGGGTAATTATGGCTG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACGTCTCCGGGTCAACCCCGGAAGTGTCACGGTACGCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATGGTTCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011304.1\|WP_046663056.1\|3618873_3619698_-\|hypothetical-protein	cas5	cls000047_cas5_CAS-I-B	unknown
NZ_CP011304.1\|WP_046663052.1\|3614109_3614703_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
NZ_CP011304.1\|WP_046663054.1\|3615538_3616105_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NZ_CP011304.1\|WP_046660474.1\|3609111_3610608_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|290319
NZ_CP011304.1\|WP_046663045.1\|3591832_3592894_-\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|366370
NZ_CP011304.1\|WP_046663055.1\|3616145_3618881_-\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP011304.1\|WP_046663053.1\|3614705_3615539_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
NZ_CP011304.1\|WP_046663835.1\|3585656_3587360_-\|solute-carrier-26-family-protein	unknown	unknown	gnl\|CDD\|273284
NZ_CP011304.1\|WP_046663047.1\|3595915_3598081_+\|O-linked-N-acetylglucosamine-transferase	unknown	unknown	gnl\|CDD\|226428
NZ_CP011304.1\|WP_046663050.1\|3612814_3613087_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP011304.1\|WP_046663043.1\|3590019_3590835_+\|DUF2993-domain-containing-protein	unknown	unknown	gnl\|CDD\|378597
NZ_CP011304.1\|WP_046663042.1\|3589769_3590012_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224246
NZ_CP011304.1\|WP_046661002.1\|3599881_3601108_-\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|376574
NZ_CP011304.1\|WP_103672725.1\|3598665_3599558_+\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NZ_CP011304.1\|WP_046663044.1\|3591107_3591788_+\|germination-protein	unknown	unknown	gnl\|CDD\|227688
NZ_CP011304.1\|WP_046663046.1\|3593744_3595898_+\|O-linked-N-acetylglucosamine-transferase	unknown	unknown	gnl\|CDD\|226428
NZ_CP011304.1\|WP_046663041.1\|3587659_3589624_-\|flavin-dependent-dehydrogenase	unknown	unknown	gnl\|CDD\|223717
NZ_CP011304.1\|WP_046663051.1\|3613099_3614104_-\|type-I-D-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274976
NZ_CP011304.1\|WP_046660896.1\|3607003_3608152_-\|IS4-family-transposase	unknown	unknown	unknown
NZ_CP011304.1\|WP_080949780.1\|3592922_3593405_+\|cytochrome-c	unknown	unknown	gnl\|CDD\|379187

Protein	Function_ID	Function_description	E-value
NZ_CP011304.1\|WP_046663052.1\|3614109_3614703_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	1.35866e-54
NZ_CP011304.1\|WP_046663054.1\|3615538_3616105_-\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	1.55985e-27
NZ_CP011304.1\|WP_046660474.1\|3609111_3610608_+\|IS5-family-transposase	gnl\|CDD\|290319	pfam13586, DDE_Tnp_1_2, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.0941e-34
NZ_CP011304.1\|WP_046663045.1\|3591832_3592894_-\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	4.78128e-37
NZ_CP011304.1\|WP_046663055.1\|3616145_3618881_-\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	3.32697e-43
NZ_CP011304.1\|WP_046663053.1\|3614705_3615539_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.28864e-45
NZ_CP011304.1\|WP_046663835.1\|3585656_3587360_-\|solute-carrier-26-family-protein	gnl\|CDD\|273284	TIGR00815, Sulfate_transporter, high affinity sulphate transporter 1. The SulP family is a large and ubiquitous family with over 30 sequenced members derived from bacteria, fungi, plants and animals. Many organisms including Bacillus subtilis, Synechocystis sp, Saccharomyces cerevisiae, Arabidopsis thaliana and Caenorhabditis elegans possess multiple SulP family paralogues. Many of these proteins are functionally characterized, and all are sulfate uptake transporters. Some transport their substrate with high affinities, while others transport it with relatively low affinities. Most function by SO42- :H+symport, but SO42- :HCO3- antiport has been reported for the rat protein (spP45380). The bacterial proteins vary in size from 434 residues to 566 residues with one exception, a Mycobacterium tuberculosis protein with 784 residues. The eukaryotic proteins vary in size from 611 residues to 893 residues with one exception, a protein designated "early nodulin 70 protein" from Glycine max which is reported to be of 485 residues. Thus, the eukaryotic proteins are almost without exception larger than the prokaryotic proteins. These proteins exhibit 10-13 putative transmembrane a-helical spanners (TMSs) depending on the protein. The phylogenetic tree for the SulP family reveals five principal branches. Three of these are bacterial specific as follows: one bears a single protein from M. tuberculosis; a second bears two proteins, one from M. tuberculosis, the other from Synechocystis sp, and the third bears all remaining prokaryotic proteins. The remaining two clusters bear only eukaryotic proteins with the animal proteins all localized to one branch and the plant and fungal proteins localized to the other. The generalized transport reactions catalyzed by SulP family proteins are: (1) SO42- (out) + nH+ (out) --> SO42- (in) + nH+ (in). (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out). [Transport and binding proteins, Anions].	7.97668e-158
NZ_CP011304.1\|WP_046663047.1\|3595915_3598081_+\|O-linked-N-acetylglucosamine-transferase	gnl\|CDD\|226428	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones].	3.38343e-162
NZ_CP011304.1\|WP_046663050.1\|3612814_3613087_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.25525e-37
NZ_CP011304.1\|WP_046663043.1\|3590019_3590835_+\|DUF2993-domain-containing-protein	gnl\|CDD\|378597	pfam11209, DUF2993, Protein of unknown function (DUF2993). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	1.67573e-22
NZ_CP011304.1\|WP_046663042.1\|3589769_3590012_+\|hypothetical-protein	gnl\|CDD\|224246	COG1327, COG1327, Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription].	0.00107048
NZ_CP011304.1\|WP_046661002.1\|3599881_3601108_-\|ISL3-family-transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	4.17478e-80
NZ_CP011304.1\|WP_103672725.1\|3598665_3599558_+\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.69658e-40
NZ_CP011304.1\|WP_046663044.1\|3591107_3591788_+\|germination-protein	gnl\|CDD\|227688	COG5401, COG5401, Spore germination protein [General function prediction only].	9.43183e-25
NZ_CP011304.1\|WP_046663046.1\|3593744_3595898_+\|O-linked-N-acetylglucosamine-transferase	gnl\|CDD\|226428	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones].	3.2671e-152
NZ_CP011304.1\|WP_046663041.1\|3587659_3589624_-\|flavin-dependent-dehydrogenase	gnl\|CDD\|223717	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion].	3.48037e-13
NZ_CP011304.1\|WP_046663051.1\|3613099_3614104_-\|type-I-D-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274976	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes a clade of Cas1 limited to the CYANO subtype of CRISPR/Cas system and most often the type found there.	2.59523e-141
NZ_CP011304.1\|WP_080949780.1\|3592922_3593405_+\|cytochrome-c	gnl\|CDD\|379187	pfam13442, Cytochrome_CBB3, Cytochrome C oxidase, cbb3-type, subunit III.	3.50185e-08

>NZ_CP011304.1|WP_103672725.1|3598665_3599558_+|IS630-family-transposase
MRPYSVDFRQKIIDVWKKEKISIRGLAQRFDVAKSFIQKLLKQHKETGDIRPRPQGGSPPTKLNSEQLIILIEIIESNNDATLEELSDLLYEKTQVKVSRATLGRLTQKLNYSFKKKTLHAAEKESDRVQQKRVEYWSQVREIEASKLIFIDESGVNLALLRLYARALIGRRDRGRKPQKRGRNISIISAISLEKVVASVNIYGAVDAVTFEGFILKEVLPKIKEGDCLLMDNAKIHLGEMVREIIEQEKARLIYLPPYSPEFSPIENFWSKVKAILRKLKARTYKDLIEGIELAML
>NZ_CP011304.1|WP_046663047.1|3595915_3598081_+|O-linked-N-acetylglucosamine-transferase
MSWQNEVKTALENNQYDIVSQFYEELIERETTEISHYWYLGLAYLLEDREEDAQATWLLVLSQAAESELSGWIKTLTQILDAEATRQENSQRLETSYLIRLHLQNLNPSFLNNLLHLMELEIQFQIFAMEKCHDWCVFELLENTATAAINLDLLLRVTEKVLIYPCTDTIHFLELAALHINNPEIIATKVISAIVNYAYQQKQSVFAINLVELCLRFLPEDLYLQNSLFNLYKTTTIDYKKSLEIADNFYKSCQTTTEKLLGISLVIAISQAKGDWGNLPKFIDELIQLIERQINAKQFNARPFIIDSILGVTICLPYYQDNPKINRYLQSKLAEIFQADVRTRYNYIAPVSSPKSPARKIKIGYIAYTLRRHSVGWLSRWLFHYHNRDKFEIYTYFVNQAADEITEKWFINNSDYSYNLPAKIEQITAQIRQDNLDILVDLDSLTNNTTCLVIALKPAPIQVTWLGLDASGIPAIDYFIADNYVLPENAEEIYSEKIIRLPNSYLSVDGFEVGVPTRRRTDLNIPDDAIIYLTVQSGLKRTLNMIYLQLQILQQVPNSYLLIKGFADKETIRELFLKSADELGISQDRLRFLPNDFNEETHRANLGIADIVLDTYPYSGATTTLETLWMGIPLVTRVGEQFAARNSYTFMKNAGISQGIAWSDEEYVQWGIKLGLDKNLREEVRWKLRKSRHTSPLWNSKQFTRNLETAYQQMWNIYCQS
>NZ_CP011304.1|WP_046663046.1|3593744_3595898_+|O-linked-N-acetylglucosamine-transferase
MSWHSQVEPAIIQGDFWQVSQFYEELIEREPLEISHYWYLGLAYLLEAREEEAQTTWLFVLSQGDEQEMNSWTVDLVNILDGEARRQVEVKNWQLSWVIRQHIYQINPDNLENLLYLVLLEIKLEYFYPQKLKDWQIVDLINSDKLENFDINLLLHTIYKLLDWPAQEVLDIIITLLKIDSQQSAILEIIEQHIEKIYYTDKTNAVILTLSCLDIIPDHLVLLHKIHQYYIDTGNFELALETANKIKNLSNDKAAKLYGIYLLLYTEILAGNWLNIDNKTQEYYQAIQNNLERGQCPMSNQAEVISITSPLAYLKDDLVGNRWLTNQLAKLFQEAVRKRFNQVTIESQKPKDVNKKLNIGYIAHTLRRHSVGFLSRWLIHYHQRDNFNIHLYLVNQVEDDITEQWFKNKVDKYNNLPANPQIIAEKINQDNIDILVDLDSITKDNTCRVMALKPAPIQITWLGLDATGIPAIDYFLVDNLVLEKNAQEFYQEKLWRLPNCYLAVDGFEIGIPTLTRQDLNIPADAITYLTLQVGLKRNPATIRLQMQIIKAVPNSYLLIKGAGSEKLINDLFISIAKEEGIDENRLRFLSGVANEEIHRANLQIADVVLDTYPYSGATTTLETLWMGIPVVTKVGQQWSSRNSYTFMTHGGISEGIAWSDEEYVQWGIKLGKDEQLRRKVIAKLDESRQTSPIWNARQFTKDVENAYRQMWQIYCES
>NZ_CP011304.1|WP_080949780.1|3592922_3593405_+|cytochrome-c
MSYIILHLPISSSGGGILGQKVAKCKEKLIFPSAACVNSQLVKPKFGLYRFLMVIIVVLFLISTFLITFHLAKMSDPYIKEVLSRQGNVSRGYEIFQINCAACHGQFADGIVGPSLEDVSRRKSRISLIEQVISGKTPPMPKFQPDTQAMADLLVYLENL
>NZ_CP011304.1|WP_046663045.1|3591832_3592894_-|mechanosensitive-ion-channel-family-protein
MNLLTRLEDWPYIILPITIVLSFLLLGWLVEQRVVSQLLSIAREKNLRFSEGVLRSLRGLSILWFGLLGLNIALSLPNLPLFPSLILLSQKFLLVAFLASATWAIAQLSVEILRVYTTGDDGISSLTSLFEFLAKVLIFSCGFLLILSSVGISITPLLTAFGIGGVSLGLALQNTLANLMSGINIITSKKVRPGDYIELRTGEAGYVRDVDLRCTVVEEITNNLLVIPNAQIISSSFRNYSLPDHSLLVPVEVGISYDSDLEKVEKITREVIQEITQLLQPNLGDYQPLIRYGKFDYYSILLTVYLKVVEEEFFQHLTIKHEFIKLLHRRYQQEGIKIPYPIFFPYPPTNPPS
>NZ_CP011304.1|WP_046663044.1|3591107_3591788_+|germination-protein
MPSSRSSDKISLPWIIGIGLALFTAGGATAWFAVHHLSSSQKTSENPIESPSPVPISKSPIVEPVSPGPVKTSPTATPAAIPVRETRQVYWLKVTDTGNQLVSQKITVQKADSRDRELTAVLKILLAGPSNSKDMTTIPPGTKLLDLKVDKTGIKINLSREFGNDDGPDMLIGRLAQIIYTTTAEDPNAKVWIQVEGKPLELLGEGHGLEVAQPMTRKFFEENYQL
>NZ_CP011304.1|WP_046663043.1|3590019_3590835_+|DUF2993-domain-containing-protein
MEWLTITLASVLTLLTPAGAIIDRVLADILRSQVQKVEQLAVRVDNTPNYQALQGKIDRVRISARGIYPLADVRIEKIELETEPISLDLRRLQQKNGNLAASLRRPAAGALHLVLTETNVNQALQSAAVKGPIQTLINNLIPSREEFGITKYQFSQANFNFLNNNRVALRLQLETQRLDEPAASLDLSLEVGFKLVQGRKIELIDPTATLNGRRLSSRLLKGFAEGISTQLDLKNFEKQGIIARLLQLQIDDDKLSIAAFGRIEPRSGNPN
>NZ_CP011304.1|WP_046663042.1|3589769_3590012_+|hypothetical-protein
MNYPIPTTPEEIAALRQRPVDEEMIAAVIAGIIRMARAQGQSLNDLTEEILAEDQVLDQVQRRWLSQLLTNAWQNLAEWV
>NZ_CP011304.1|WP_046663041.1|3587659_3589624_-|flavin-dependent-dehydrogenase
MREILYREIPTPDSSAVCQWLQSDWQPASGVKTNTPNGVRLRLSEALELSIFVWTLQRTTYLKVFRWGERSHYLETSLTRQLDRALQKRFPPQYTTIPNIDQKNQSIFTALEADYPLTVHYFRKMPQGEADLERLYWWEKRWRDSAKNPQQPQPVIFSSSEENDHPIAYDLIYIGGALGAIHAAQMAKLGYRVLLVERLPFGRMNREWNISRSEFQSLINLGLFTAEEFEELIFQEYLDGFNKFFDGNNPPHLKAKILHTPTVLNIAINSDKLLQSCGKKLQDHGGKILDQTEFIKANITANSVTVTLNHSGEIQQIKGRLLIDAMGSASPIAWQLNGVRAFDSVCPTVGAVVEGFEPVVWDSHYGDVLNSHGDISKGRQLIWELFPGEGKELTFYLFHYHQVHPDNPGSLLEMYEDFFTILPEYRQCDPEKLTWKKPTFGYIPGHFSTGKKDRIVSFDRILAIGDAASLQSPLIFTGFGSLVRNLERLTDLLDMALKHNLLTAKDLENVRAYQSNVAVTWLFSKGMMVPTGKTLPPQRINAMLNTFFGLLADEPPEVSETFIKDKTDWLTFSRLAIKAARKNPALLLWIAEMAGSQDLIRWLGSYLDFSLDGVKNLFFGSWFPQWLKNSQSWLEKDNPRLWLKLLSFNYGLRN
>NZ_CP011304.1|WP_046663835.1|3585656_3587360_-|solute-carrier-26-family-protein
MVTRLNFSSEQFSLPGLKRLRSYRSAWLRGDIIAGITVAAYLVPQCLAYAELAGVQPIAGLWAILPPMLIYALLGSSPQLSVGPESTTAVMTAAAIMPLVAGDSSNYASLCSLLALLVGSVCCLAAFAQLGFLADLLSKPILVGYMAGVAVIMIVGQLGKISGMSLKAESLFGQIGEFSRHLSEIHPPTLILAAGVLIFLLLVQRRFPNAPGPLLAVLLATSAVYLFHLNERGIAVIGEIPAGLPSLKVPRGFSPQQFVYLLSSAIGIALVGYSDNVLTARAFGAKNDYRIDGNQELLALGALNIGNGIMQGFPVSSSGSRTAIGDSLGSRSQLFSLVAFLIVILVLLFLRPLLSLFPKAALGAIVIYAALRLIEISEFNRLRCFKTSEFRLALVTMFGVLATDILVGVGVAVGLSVVDLFTRLMRPHDAVLGEVPNLAGLHDIEDWQGATTIPGLVLYRYDAPLCFANAENFRKRAIAAIEAEQVPVEWFVLNAEAILDIDITAVDMLKELHRELIGRGITFAMARVKQDLYQQLKKGDLSETISTERIYPTLEEAIEAFHRKFWV
>NZ_CP011304.1|WP_046661002.1|3599881_3601108_-|ISL3-family-transposase
MPSNPQLKLMTELLHLEGVVVTNYQIITDIGIVLHLENMSRESQCIHCGSKTEKVHQNNELTIRDLPFGEQALYLRINRRQMRCEKCGKKFTEELNYLPKKRTYTDRFRKKIVAEVLNSDLKNTAERNGVSEQEIETMLKDLGEELITAKPQGLKKLGIDEIAMIKGKGNYYAVLVNIDTGKIIGLGEKRTEEALTEYLKHWGEEVLSQIEEVSIDLWIGYKNVAEKLMPQAQIVGDRFHVMKQVNNELDEARKEVKREAAKIKNKKNKENILAGIAKSKYALLKNEGDLVEKERKKLEEIYKVSPKLGEMHKLKEEFREVFEKNTEGNEGLFALSDWLKKAMAYFPKSCQTIRRWIDEITAYFDNRTTQGTVEGINNKLKVIKRRGYGFRNFKNFSLRCLLNWHFAS
>NZ_CP011304.1|WP_046660896.1|3607003_3608152_-|IS4-family-transposase
MISELYQKVLENELGRARYLLLLMIVGTLQILKQAKLEILAEALPIPILFESRRKKLKRFLKLEILNIEKIWFLCLKEMLKQQQRFTTKGLAYIAIDRTSWGAINILMVSLIYDKRAIPIYWEILDKKGSSNLEEQQRVLEKTLTVLSGHKIVVLGDREFCSVSLGKWLQKQSLYFCLRQKKSTNVKTKEGIYQEMRELGLSPGTQLFLNDVNITKEQGFGQFNLAGKWKKTYGGFQTKEPWYILTNFVDLETAIIAYQKRFDIEEMFRDFKSGGYSLEGSQLAPQYLSKLIIVIAIAYTSATLQGKKIKDMGIQKYVTRPEKRYKGQRRHSSFYVGQHLYHWLQLHQMFQKNIEELMQISRYRLKDYIKGQRAISLALSTF
>NZ_CP011304.1|WP_046660474.1|3609111_3610608_+|IS5-family-transposase
MYRKSELPSTPPENFELPFEGKLSQDNRWVIMANLIPWSEFEAEYASLFSEEMGTPAKTFRTALGALIIKEKLGTSDRETVEQIKENPYLQYFLGFSSYSNEPRFEASMLVHFRERITLELINKVNRFMVKNSREIKEEENTEKKLESETQSQPENRGKLILDASCAPADISYPTDLNLLNQGRKQTEKIIDILYETLKGKLVQKPRTYRLLARKSYLEVAKKRKPTVKQRRKALKRQLQYLKRNLDHIEQLLAEGASLQSLKKRDYKLLLVVTEVYRQQLWMYQNNKQSIEDRIVSLTQPHIRPIVRGKAGKPVEFGAKFSASCIDGYIFLDRISWDNFNESGDLKAQIEAYYDYTGYYPESVHVDKIYRTRENRAWCKERGIRISGPPLGRPAKNVSKEQKKQATDDERIRNCIEGKFGQGKRRFSLGKVMAKLPHTSFSAIAITFLVMNLSNLLRQVFWAFLCLKWKNSTFSRSMIRISYNLKINQQLKLMLVAK
>NZ_CP011304.1|WP_046663050.1|3612814_3613087_-|CRISPR-associated-endonuclease-Cas2
MYFVISYDISDDKRRTKIHNTLKSYGQRVQYSVFECDLTDTQYAKLRGRLSKLIKPDTDSIRFYFLCACCRGKVERIGGELPRDNTIFFV
>NZ_CP011304.1|WP_046663051.1|3613099_3614104_-|type-I-D-CRISPR-associated-endonuclease-Cas1
MGTVYVTREDAFLGKNDERLTVKASKETILDVPLLNVDGVVLFGRGSLSPALVIELLERHIPLSFVTSTGRYLGRLEPEMTKNIFVRRAQWQAAGDSPKAIHLVRGFVRGKLKNYRNILLRRQRDRKELDLQTAIACLEAAIGSIETTSAIDSLRGLEGAGSAAYFSCFDSLILGDTFTFASRNRRPPRDPVNSLLSLGYALLRHDVQSAINLVGFDPYLGYLHYQRYGRPSLALDLMEEFRAIVVDAVVLNGVNHPYLTPEHFTTEPLSGAVSLTREGLQIFLRLYEQKKQSKFKHPVMSKQCTYQEAFEIQARLMAKYLMDETDKYPPLILK
>NZ_CP011304.1|WP_046663052.1|3614109_3614703_-|CRISPR-associated-protein-Cas4
MDESDYIPIAALNHYAYCPHRCWRMFVAGEFLNNSYTIEGTNLHERVHTVGAGNREEIWQIRAIWLKSDNYRLIGKADLIESHDGEFIPVEYKRGSKGEWDNDELQVCAQAICLEEMTGKRLDTGYIYYASSHQRQPVAIDLALRQRAIATIRAVETLIQTGKMPPAVYSPRCKGCSLFDRCLPRLTEKVQRYQEED
>NZ_CP011304.1|WP_046663053.1|3614705_3615539_-|CRISPR-associated-endoribonuclease-Cas6
MPYSLVLNLTPRSPIYPNFLTGRHLHALFLTLVSSVDQELGNILHASDADKAFTLSPLQMQSRRKTINFPRWRHEREIAPETPCWWRISLLDDRLFGKLTPLWLNLNPKQPWHLGSADLVITSVLATPQSVQPWANSCTYQYLYENASETNREFDFLFATPVTFRQGKFDSALPTRELVFNSLLSRWNRYSGISFDSIALESIFPSFFDIQTKLTDEAYKNQSIGCVGEIHYRLLGEVEPAKIKAINALADFALYAGVGRKTTMGMGMTRRISKDKR
>NZ_CP011304.1|WP_046663054.1|3615538_3616105_-|Uma2-family-endonuclease
MTLISSKSLTLPEFLSLTPPDGDITYELVDGEAIPKMSPKFFHSRLTGALFLLLDRWNQGRGEVGIEWAIVLSKNDRDWCPVPDLLYISPERLGDITLTDEACPVPPELVIEIISPEQSFSSLSEKAVDYLKAGVSRVWIVDPQAKQITIFYPDAPPAIKKGDDEMSDILLPDLTLTPGQIFAKARLS
>NZ_CP011304.1|WP_046663055.1|3616145_3618881_-|CRISPR-associated-helicase-Cas3'
MSKSNPQPFFKFGRVFFPGEPTIAPDKILFQPLGNHVGNVRQLARKWQDGNFSLERVIEGINLHDKAKPQTFKIRVETNKQGEFTKYTYSFKGHRFKVDNPQNLWVQALARGHHDYSTKEIIKDTYQLKKDTEYQKIFSKDPLQYAKELYILEMCDQIEAELACRVIGDDEQAKSRTFMDFTITKGTSEDSNHRVFYLDPYPFKEPTITLNFRSWTYNLSDEDKNQLQQLHENRKDKELGSKLNTLVKEWWKKNEHTISEDRAITAIIKPDNSNTYSPSEKSENAIFWWYEELANFQPNPMQEEVFQTMVKNQHPAFILKAPTGAGKFEAIIIPFLAMLSTKEDRPRLIIPLPARSLLEDQKQRCDKYLKQFSLLHKGREVSLVIDTGTEMNRYVYLDGEVKSSNNSRRHLYKGDIILTTIDKFIYRYFGYGDKQKSFIFPYRIYHGNTLICFDEAHTYDDISFTNFCSLVKALYEAGCSLVLMTATLSQNHLERFDYLADNMIDYIDVQDNLEKLNNFYQQILKQDYSNLKQFEFYEEPTNLQQKLTSIALEEWNSNPSHRIIVSVETVKDAIAIYEKIKQTLNIKFSEKKEFLFLYHGRLSDIPKTSHYSRTNLYQRLKERDENDQAYILVTTSAIEVGCDLNSTRLITQLCNPESLIQRAGRCNRKGNVEDAKIIVIGNNIPEFVNTLSEAELENYKTILKGLHDQNFDPKAIMNCVSTKQTIDDYRVVELFSLLQDYVYNADLTCQSAHEKGLVITRSWTPSVTLVYDDGKQGDSLEKIVKESPQIQVSIDRLILKKNNEGNYTNQYANVSVYEWIYDKEETRYKLEPLKYWGCAYSKELVIKVCAVQEGAISDSFEPYSYDHELGFKDLPGVFIKWRSNGYQERLQYNPTKDRSVVINYTSALTQD
>NZ_CP011304.1|WP_046663056.1|3618873_3619698_-|hypothetical-protein
MYCLTFKIIPTAAMTFRILPGSILNIATYPFVPPTTFSGFLRRIVMLSEGLDIPETSINKENPPYFTLPRQYIALGAYPVLDKWSGVHRTHRKGTRSFNHDVFSRLYIDGDRENFQLHTWEYFIAEELIGYVVSESKSSLEAFSNLQGVGCKIGKEGFAVIDEVSESIRLQRKILSAHPSTVVPMEALIQRNPCINRCDIYNLYRHEWSADQTQDEDKGLFDTERSPINGFIPFVAAYYPEKAHPLPTLDFYTDGNLQIPVALVELLQRESINV

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Crispr_ID: NZ_CP011304_22

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011304_22

3601305-3606945

Unclear

I-D,II-B

Consensus_repeat	Method
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CRISPRCasFinder
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CRT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	PILER-CR

78 spacers

cas2,cas1,cas4,cas6,cas3,cas5,cas7

The CRISPR arrays of NZ_CP011304_22

>merge|NZ_CP011304|22|3601305-3606945|CRISPRCasFinder,CRT,PILER-CR
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAAATTCAGGGTATTTTGGCTTAAATCCCCAAAATTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTAGGGTGTAAAGAGTCGATACATAGCACATATCCCGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACACGGTTCAACCGACCTAAAACAACTATTAGCAGGGGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGTTTTTCGGCTATTTTTAGCCCAATTCTGTAGGAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAAGTGGAATTAATGCTTAAAAATACTGCTGAATTGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAGGTAACTGACTAGGGACGGTATCAGGCGAATTAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTCGGAACACTCAAGGATGCCCTAATCTCGTTGTTTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTATTTCTAGAGATTTTAGGGTAATTTCTAGGATCGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACACCCCGCAGCACTCGGATCGATTTACGATTACCTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCTGTATCGTGCCGTCGATTTCATCCCCATAGATGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCCCGTTGCCAGTCAGGTCTGTCGCGCCTGAAACTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAATCAGCAAAGTGTTAAGGCTAGAATGGCGCGATGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCTTGTTTTATTTGGTATCCACTCGATAATATCGTTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTTTCTTTTTCTTTCGATTGGGGCCGGGAGTGTCTAGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCCGGGACGGACGGTTATCTACTCAAGCTATCTATGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTCGATCGCCGCGTCGATCTTTTCCTCGAAGTTGGGCGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTCGGATCCGAGTCGGTACGACTGCCAGAAAACTTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAGTGAGGGTCATCCCTACTACGCGCCCGTTAAGGAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTTGGGAAAATACCATTATGTTTGGTGATGAAGTCGATGGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGTTTGATACTGCAATTATACCTATTTGTGATTATGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTTATAGACGTTCCGCGAATACTACTTTAGCCCGTGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAAAGTCCATCAACACATATATGTGTTGATTTTCGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAAAAGGCCAGGATTTTACCCTATCTGTACTCGATGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACACTTTATACAAGATACTTATACATACTTTATACAAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTCGAGGGTCGCTGGTAATATAAAATAAATCCGTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACATAATTTAGAAGACTCGATCGATATCCAATCGCTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACATCTAACTGTGACACTTTGAGAATTGGCACTCGATGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAAGAATGATGATGCTTCTTTTCTGTTTTTAGCCTTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCAGGTCTAATAATTCAAGCCCTGTCTCGTTAAGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGAAAAAGGGGTGAACCCGAAGGTAACTCGTGGGATTTTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTAACCTACTCTTTCCATATTTCTTCTCAAGCTGGTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAAGAATTTTTTCGAGATTGGGAGAAATAGGAAGTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGTTTCCTCTGATGAGGAAGCGGTGGTTTTTTATGAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTCAGGATCAAAAGAATTGGGATTAAGATGTAAAAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACATCAATCAAGAAACTCAAGAAAGCAATCAAGAAAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTAGGTGAGATGCTGAAAAATAAACCCGTCTCTATCTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACATTGTTCCCGTTGCCGGTCAAGTCTTTTGCCCCGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCTGCTAATTTAGCGACTCCTTTAAATGGTATCGTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCGGTAGCAATTAGAACTTTACTAGAATCCTCTTTAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCAGTACACCGGCGATTATATCATTTACAGAATTGTCGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAGTACAAATAAAAGATTATGTAACTTTTATTAGTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCGTTTTTAACGGTTTTGGGTTTCGTATCCTGATCGAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTAAAAAACCATTATTTAGAAGCAAGAAAAAATGCCTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCCTTTACCAGACCGGCATAATTCAAGGAATTGGCGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACATTGGGTGCGATACCCGTATCCTTGATAAATCGGTAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTACCCTGGAATCATCGGGATTTGAAATCAAAGGCGGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGGTTCAACCGACCTAAAACAACTATTAGCAGGGGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTGGATAGTTTACATCGCTTTTATCTATCAGAAAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACATGGTGTTTTTTGTAGTCCATATTTTGATATTTCTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGAAAAAGAATTTGAGAGAAATAAGAGAAGATTTGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCTATCAGAAAAACTGTTTTATCTGTTGCCACTAAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTTGTATAGTGTCAAGAGTTTTATTCTAAGTAGTGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACATTAATACTATCTTCTCTATTTCTTTTTGAATTTTGTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCTGTTTTTTGCTTGCCAGACCTTAATGCAACTGTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTTCATGGCACGTCAAACTATTTATTAAGCAATGAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTTTATTAGATTTTTTTTGTGCTATCATAGTAGAATGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCCTCGCTGGTTTCCTTTAGTTTTTTGATGTTTTCCGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCCCCCCTTCCCCCTCCGGCCCGACCGGCGATCGAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAGCATTAAAGGGGGATAAGGTTATCCCCCCAGCGAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACATGGCGCGGCCGATGATGCTTTTTCCTTCCCCTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTAACATAAAATTCCCATCGGTTCCATCTTCTACTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTATTCCCGTCGCTATGTGATTAAGAACAGTCCCTTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAATCAGGAAACTGTAGAGACTGACTCAATAGATGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTCGAAAAAGAATTTGAGAGAAATAAAAGAAGATTTGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAAGCATTGACTCGATTTGTTCATACTTAAAATCGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGTTTTGATATTGAAAATAAGGATAATAATTGTTATCTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGTCTGAAAGTCTTGCTAGAAGCAAGTTTCAAAAAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACACGCTACCTACTGCATAACCCAGATACCCTAAAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTCTCTTTATGAAGGGGAATCGGGCATCTTAATCAAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGTTCCGTCCTCTACTGACTGTTTAAAAGTGTCACTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTTGGAACGACCGATTACCTCTCTCTCATGAAACCTTACGGAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTCCACTGATAACGATAGAATTAATATCATCTAATGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAGCAATGGCTTTAATATGTGGGCATTCAAGCCGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGCGATCGCATGGCTGATCGTCTAAATCGGACTATTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTGCCCATCAAACATTGTTTGCTGGCGGTTTTATTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTCTCAGAATAATGTGGCGGGTGCGGTCAATCTTCTTCAACGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTTGATAGTCTGATCCTGGTACAATATCATTAGTCACGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGTGACTAACGTGATTGCGTTAGGCAATGTCCCTTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACT

>NZ_CP011304|22|21|3601305-3606945|CRISPRCasFinder
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAATTCAGGGTATTTTGGCTTAAATCCCCAAAATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAGGGTGTAAAGAGTCGATACATAGCACATATCCC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACGGTTCAACCGACCTAAAACAACTATTAGCAGGGG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTTTTTCGGCTATTTTTAGCCCAATTCTGTAGGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGTGGAATTAATGCTTAAAAATACTGCTGAATTG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGGTAACTGACTAGGGACGGTATCAGGCGAATTA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCGGAACACTCAAGGATGCCCTAATCTCGTTGTTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TATTTCTAGAGATTTTAGGGTAATTTCTAGGATCG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACCCCGCAGCACTCGGATCGATTTACGATTACCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTGTATCGTGCCGTCGATTTCATCCCCATAGAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCCGTTGCCAGTCAGGTCTGTCGCGCCTGAAACT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AATCAGCAAAGTGTTAAGGCTAGAATGGCGCGAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTTGTTTTATTTGGTATCCACTCGATAATATCGTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTTCTTTTTCTTTCGATTGGGGCCGGGAGTGTCTAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCGGGACGGACGGTTATCTACTCAAGCTATCTAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCGATCGCCGCGTCGATCTTTTCCTCGAAGTTGGGC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCGGATCCGAGTCGGTACGACTGCCAGAAAACTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGTGAGGGTCATCCCTACTACGCGCCCGTTAAGGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTGGGAAAATACCATTATGTTTGGTGATGAAGTCGATGG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTTTGATACTGCAATTATACCTATTTGTGATTAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTATAGACGTTCCGCGAATACTACTTTAGCCCGTG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAAGTCCATCAACACATATATGTGTTGATTTTCG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAAAGGCCAGGATTTTACCCTATCTGTACTCGAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACTTTATACAAGATACTTATACATACTTTATACAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCGAGGGTCGCTGGTAATATAAAATAAATCCGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATAATTTAGAAGACTCGATCGATATCCAATCGCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATCTAACTGTGACACTTTGAGAATTGGCACTCGAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGAATGATGATGCTTCTTTTCTGTTTTTAGCCTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CAGGTCTAATAATTCAAGCCCTGTCTCGTTAAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GAAAAAGGGGTGAACCCGAAGGTAACTCGTGGGATTTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAACCTACTCTTTCCATATTTCTTCTCAAGCTGGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGAATTTTTTCGAGATTGGGAGAAATAGGAAGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTTTCCTCTGATGAGGAAGCGGTGGTTTTTTATGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCAGGATCAAAAGAATTGGGATTAAGATGTAAAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATCAATCAAGAAACTCAAGAAAGCAATCAAGAAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAGGTGAGATGCTGAAAAATAAACCCGTCTCTATCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATTGTTCCCGTTGCCGGTCAAGTCTTTTGCCCCG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTGCTAATTTAGCGACTCCTTTAAATGGTATCGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CGGTAGCAATTAGAACTTTACTAGAATCCTCTTTA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CAGTACACCGGCGATTATATCATTTACAGAATTGTC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGTACAAATAAAAGATTATGTAACTTTTATTAGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CGTTTTTAACGGTTTTGGGTTTCGTATCCTGATCGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAAAAAACCATTATTTAGAAGCAAGAAAAAATGCCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCTTTACCAGACCGGCATAATTCAAGGAATTGGC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATTGGGTGCGATACCCGTATCCTTGATAAATCGGTA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TACCCTGGAATCATCGGGATTTGAAATCAAAGGCGG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GGTTCAACCGACCTAAAACAACTATTAGCAGGGG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TGGATAGTTTACATCGCTTTTATCTATCAGAAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATGGTGTTTTTTGTAGTCCATATTTTGATATTTCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GAAAAAGAATTTGAGAGAAATAAGAGAAGATTTG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTATCAGAAAAACTGTTTTATCTGTTGCCACTAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTGTATAGTGTCAAGAGTTTTATTCTAAGTAGTG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATTAATACTATCTTCTCTATTTCTTTTTGAATTTTGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTGTTTTTTGCTTGCCAGACCTTAATGCAACTGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTCATGGCACGTCAAACTATTTATTAAGCAATGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTTATTAGATTTTTTTTGTGCTATCATAGTAGAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCTCGCTGGTTTCCTTTAGTTTTTTGATGTTTTCC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCCCCCTTCCCCCTCCGGCCCGACCGGCGATCGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGCATTAAAGGGGGATAAGGTTATCCCCCCAGCGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATGGCGCGGCCGATGATGCTTTTTCCTTCCCCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAACATAAAATTCCCATCGGTTCCATCTTCTACT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TATTCCCGTCGCTATGTGATTAAGAACAGTCCCTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AATCAGGAAACTGTAGAGACTGACTCAATAGATG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCGAAAAAGAATTTGAGAGAAATAAAAGAAGATTTG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGCATTGACTCGATTTGTTCATACTTAAAATCG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTTTTGATATTGAAAATAAGGATAATAATTGTTATCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTCTGAAAGTCTTGCTAGAAGCAAGTTTCAAAAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACGCTACCTACTGCATAACCCAGATACCCTAAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCTCTTTATGAAGGGGAATCGGGCATCTTAATCAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTTCCGTCCTCTACTGACTGTTTAAAAGTGTCACT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTGGAACGACCGATTACCTCTCTCTCATGAAACCTTACGGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCCACTGATAACGATAGAATTAATATCATCTAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGCAATGGCTTTAATATGTGGGCATTCAAGCCG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GCGATCGCATGGCTGATCGTCTAAATCGGACTATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TGCCCATCAAACATTGTTTGCTGGCGGTTTTATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCTCAGAATAATGTGGCGGGTGCGGTCAATCTTCTTCAAC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTGATAGTCTGATCCTGGTACAATATCATTAGTCAC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTGACTAACGTGATTGCGTTAGGCAATGTCCCTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACT

>NZ_CP011304|22|2|3601305-3606944|CRT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAATTCAGGGTATTTTGGCTTAAATCCCCAAAATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAGGGTGTAAAGAGTCGATACATAGCACATATCCC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACGGTTCAACCGACCTAAAACAACTATTAGCAGGGG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTTTTTCGGCTATTTTTAGCCCAATTCTGTAGGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGTGGAATTAATGCTTAAAAATACTGCTGAATTG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGGTAACTGACTAGGGACGGTATCAGGCGAATTA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCGGAACACTCAAGGATGCCCTAATCTCGTTGTTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TATTTCTAGAGATTTTAGGGTAATTTCTAGGATCG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACCCCGCAGCACTCGGATCGATTTACGATTACCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTGTATCGTGCCGTCGATTTCATCCCCATAGAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCCGTTGCCAGTCAGGTCTGTCGCGCCTGAAACT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AATCAGCAAAGTGTTAAGGCTAGAATGGCGCGAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTTGTTTTATTTGGTATCCACTCGATAATATCGTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTTCTTTTTCTTTCGATTGGGGCCGGGAGTGTCTAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCGGGACGGACGGTTATCTACTCAAGCTATCTAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCGATCGCCGCGTCGATCTTTTCCTCGAAGTTGGGC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCGGATCCGAGTCGGTACGACTGCCAGAAAACTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGTGAGGGTCATCCCTACTACGCGCCCGTTAAGGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTGGGAAAATACCATTATGTTTGGTGATGAAGTCGATGG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTTTGATACTGCAATTATACCTATTTGTGATTAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTATAGACGTTCCGCGAATACTACTTTAGCCCGTG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAAGTCCATCAACACATATATGTGTTGATTTTCG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAAAGGCCAGGATTTTACCCTATCTGTACTCGAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACTTTATACAAGATACTTATACATACTTTATACAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCGAGGGTCGCTGGTAATATAAAATAAATCCGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATAATTTAGAAGACTCGATCGATATCCAATCGCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATCTAACTGTGACACTTTGAGAATTGGCACTCGAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGAATGATGATGCTTCTTTTCTGTTTTTAGCCTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CAGGTCTAATAATTCAAGCCCTGTCTCGTTAAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GAAAAAGGGGTGAACCCGAAGGTAACTCGTGGGATTTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAACCTACTCTTTCCATATTTCTTCTCAAGCTGGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGAATTTTTTCGAGATTGGGAGAAATAGGAAGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTTTCCTCTGATGAGGAAGCGGTGGTTTTTTATGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCAGGATCAAAAGAATTGGGATTAAGATGTAAAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATCAATCAAGAAACTCAAGAAAGCAATCAAGAAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAGGTGAGATGCTGAAAAATAAACCCGTCTCTATCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATTGTTCCCGTTGCCGGTCAAGTCTTTTGCCCCG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTGCTAATTTAGCGACTCCTTTAAATGGTATCGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CGGTAGCAATTAGAACTTTACTAGAATCCTCTTTA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CAGTACACCGGCGATTATATCATTTACAGAATTGTC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGTACAAATAAAAGATTATGTAACTTTTATTAGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CGTTTTTAACGGTTTTGGGTTTCGTATCCTGATCGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAAAAAACCATTATTTAGAAGCAAGAAAAAATGCCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCTTTACCAGACCGGCATAATTCAAGGAATTGGC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATTGGGTGCGATACCCGTATCCTTGATAAATCGGTA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TACCCTGGAATCATCGGGATTTGAAATCAAAGGCGG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GGTTCAACCGACCTAAAACAACTATTAGCAGGGG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TGGATAGTTTACATCGCTTTTATCTATCAGAAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATGGTGTTTTTTGTAGTCCATATTTTGATATTTCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GAAAAAGAATTTGAGAGAAATAAGAGAAGATTTG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTATCAGAAAAACTGTTTTATCTGTTGCCACTAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTGTATAGTGTCAAGAGTTTTATTCTAAGTAGTG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATTAATACTATCTTCTCTATTTCTTTTTGAATTTTGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTGTTTTTTGCTTGCCAGACCTTAATGCAACTGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTCATGGCACGTCAAACTATTTATTAAGCAATGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTTATTAGATTTTTTTTGTGCTATCATAGTAGAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCTCGCTGGTTTCCTTTAGTTTTTTGATGTTTTCC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCCCCCTTCCCCCTCCGGCCCGACCGGCGATCGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGCATTAAAGGGGGATAAGGTTATCCCCCCAGCGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATGGCGCGGCCGATGATGCTTTTTCCTTCCCCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAACATAAAATTCCCATCGGTTCCATCTTCTACT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TATTCCCGTCGCTATGTGATTAAGAACAGTCCCTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AATCAGGAAACTGTAGAGACTGACTCAATAGATG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCGAAAAAGAATTTGAGAGAAATAAAAGAAGATTTG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGCATTGACTCGATTTGTTCATACTTAAAATCG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTTTTGATATTGAAAATAAGGATAATAATTGTTATCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTCTGAAAGTCTTGCTAGAAGCAAGTTTCAAAAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACGCTACCTACTGCATAACCCAGATACCCTAAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCTCTTTATGAAGGGGAATCGGGCATCTTAATCAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTTCCGTCCTCTACTGACTGTTTAAAAGTGTCACT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTGGAACGACCGATTACCTCTCTCTCATGAAACCTTACGGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCCACTGATAACGATAGAATTAATATCATCTAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGCAATGGCTTTAATATGTGGGCATTCAAGCCG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GCGATCGCATGGCTGATCGTCTAAATCGGACTATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TGCCCATCAAACATTGTTTGCTGGCGGTTTTATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCTCAGAATAATGTGGCGGGTGCGGTCAATCTTCTTCAAC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTGATAGTCTGATCCTGGTACAATATCATTAGTCAC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTGACTAACGTGATTGCGTTAGGCAATGTCCCTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC

>NZ_CP011304|22|3|3605035-3606944|PILER-CR
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATTAATACTATCTTCTCTATTTCTTTTTGAATTTTGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTGTTTTTTGCTTGCCAGACCTTAATGCAACTGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTCATGGCACGTCAAACTATTTATTAAGCAATGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTTATTAGATTTTTTTTGTGCTATCATAGTAGAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCTCGCTGGTTTCCTTTAGTTTTTTGATGTTTTCC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCCCCCTTCCCCCTCCGGCCCGACCGGCGATCGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGCATTAAAGGGGGATAAGGTTATCCCCCCAGCGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATGGCGCGGCCGATGATGCTTTTTCCTTCCCCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAACATAAAATTCCCATCGGTTCCATCTTCTACT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TATTCCCGTCGCTATGTGATTAAGAACAGTCCCTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AATCAGGAAACTGTAGAGACTGACTCAATAGATG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCGAAAAAGAATTTGAGAGAAATAAAAGAAGATTTG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGCATTGACTCGATTTGTTCATACTTAAAATCG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTTTTGATATTGAAAATAAGGATAATAATTGTTATCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTCTGAAAGTCTTGCTAGAAGCAAGTTTCAAAAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACGCTACCTACTGCATAACCCAGATACCCTAAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCTCTTTATGAAGGGGAATCGGGCATCTTAATCAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTTCCGTCCTCTACTGACTGTTTAAAAGTGTCACT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTGGAACGACCGATTACCTCTCTCTCATGAAACCTTACGGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCCACTGATAACGATAGAATTAATATCATCTAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGCAATGGCTTTAATATGTGGGCATTCAAGCCG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GCGATCGCATGGCTGATCGTCTAAATCGGACTATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TGCCCATCAAACATTGTTTGCTGGCGGTTTTATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TCTCAGAATAATGTGGCGGGTGCGGTCAATCTTCTTCAAC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTGATAGTCTGATCCTGGTACAATATCATTAGTCAC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTGACTAACGTGATTGCGTTAGGCAATGTCCCTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011304.1\|WP_046663056.1\|3618873_3619698_-\|hypothetical-protein	cas5	cls000047_cas5_CAS-I-B	unknown
NZ_CP011304.1\|WP_012266052.1\|3619701_3620595_-\|hypothetical-protein	cas7	cls000038_cas7_CAS-I-B	unknown
NZ_CP011304.1\|WP_046663052.1\|3614109_3614703_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
NZ_CP011304.1\|WP_046663054.1\|3615538_3616105_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NZ_CP011304.1\|WP_046663045.1\|3591832_3592894_-\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|366370
NZ_CP011304.1\|WP_046663055.1\|3616145_3618881_-\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP011304.1\|WP_046663053.1\|3614705_3615539_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
NZ_CP011304.1\|WP_046660474.1\|3609111_3610608_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|290319
NZ_CP011304.1\|WP_046663047.1\|3595915_3598081_+\|O-linked-N-acetylglucosamine-transferase	unknown	unknown	gnl\|CDD\|226428
NZ_CP011304.1\|WP_046663050.1\|3612814_3613087_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP011304.1\|WP_046663043.1\|3590019_3590835_+\|DUF2993-domain-containing-protein	unknown	unknown	gnl\|CDD\|378597
NZ_CP011304.1\|WP_046663042.1\|3589769_3590012_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224246
NZ_CP011304.1\|WP_046661002.1\|3599881_3601108_-\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|376574
NZ_CP011304.1\|WP_103672725.1\|3598665_3599558_+\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NZ_CP011304.1\|WP_046663044.1\|3591107_3591788_+\|germination-protein	unknown	unknown	gnl\|CDD\|227688
NZ_CP011304.1\|WP_046663046.1\|3593744_3595898_+\|O-linked-N-acetylglucosamine-transferase	unknown	unknown	gnl\|CDD\|226428
NZ_CP011304.1\|WP_046663041.1\|3587659_3589624_-\|flavin-dependent-dehydrogenase	unknown	unknown	gnl\|CDD\|223717
NZ_CP011304.1\|WP_046663051.1\|3613099_3614104_-\|type-I-D-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274976
NZ_CP011304.1\|WP_046660896.1\|3607003_3608152_-\|IS4-family-transposase	unknown	unknown	unknown
NZ_CP011304.1\|WP_080949780.1\|3592922_3593405_+\|cytochrome-c	unknown	unknown	gnl\|CDD\|379187

Protein	Function_ID	Function_description	E-value
NZ_CP011304.1\|WP_046663052.1\|3614109_3614703_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	1.35866e-54
NZ_CP011304.1\|WP_046663054.1\|3615538_3616105_-\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	1.55985e-27
NZ_CP011304.1\|WP_046663045.1\|3591832_3592894_-\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	4.78128e-37
NZ_CP011304.1\|WP_046663055.1\|3616145_3618881_-\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	3.32697e-43
NZ_CP011304.1\|WP_046663053.1\|3614705_3615539_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.28864e-45
NZ_CP011304.1\|WP_046660474.1\|3609111_3610608_+\|IS5-family-transposase	gnl\|CDD\|290319	pfam13586, DDE_Tnp_1_2, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.0941e-34
NZ_CP011304.1\|WP_046663047.1\|3595915_3598081_+\|O-linked-N-acetylglucosamine-transferase	gnl\|CDD\|226428	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones].	3.38343e-162
NZ_CP011304.1\|WP_046663050.1\|3612814_3613087_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.25525e-37
NZ_CP011304.1\|WP_046663043.1\|3590019_3590835_+\|DUF2993-domain-containing-protein	gnl\|CDD\|378597	pfam11209, DUF2993, Protein of unknown function (DUF2993). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	1.67573e-22
NZ_CP011304.1\|WP_046663042.1\|3589769_3590012_+\|hypothetical-protein	gnl\|CDD\|224246	COG1327, COG1327, Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription].	0.00107048
NZ_CP011304.1\|WP_046661002.1\|3599881_3601108_-\|ISL3-family-transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	4.17478e-80
NZ_CP011304.1\|WP_103672725.1\|3598665_3599558_+\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.69658e-40
NZ_CP011304.1\|WP_046663044.1\|3591107_3591788_+\|germination-protein	gnl\|CDD\|227688	COG5401, COG5401, Spore germination protein [General function prediction only].	9.43183e-25
NZ_CP011304.1\|WP_046663046.1\|3593744_3595898_+\|O-linked-N-acetylglucosamine-transferase	gnl\|CDD\|226428	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones].	3.2671e-152
NZ_CP011304.1\|WP_046663041.1\|3587659_3589624_-\|flavin-dependent-dehydrogenase	gnl\|CDD\|223717	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion].	3.48037e-13
NZ_CP011304.1\|WP_046663051.1\|3613099_3614104_-\|type-I-D-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274976	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes a clade of Cas1 limited to the CYANO subtype of CRISPR/Cas system and most often the type found there.	2.59523e-141
NZ_CP011304.1\|WP_080949780.1\|3592922_3593405_+\|cytochrome-c	gnl\|CDD\|379187	pfam13442, Cytochrome_CBB3, Cytochrome C oxidase, cbb3-type, subunit III.	3.50185e-08

>NZ_CP011304.1|WP_046661002.1|3599881_3601108_-|ISL3-family-transposase
MPSNPQLKLMTELLHLEGVVVTNYQIITDIGIVLHLENMSRESQCIHCGSKTEKVHQNNELTIRDLPFGEQALYLRINRRQMRCEKCGKKFTEELNYLPKKRTYTDRFRKKIVAEVLNSDLKNTAERNGVSEQEIETMLKDLGEELITAKPQGLKKLGIDEIAMIKGKGNYYAVLVNIDTGKIIGLGEKRTEEALTEYLKHWGEEVLSQIEEVSIDLWIGYKNVAEKLMPQAQIVGDRFHVMKQVNNELDEARKEVKREAAKIKNKKNKENILAGIAKSKYALLKNEGDLVEKERKKLEEIYKVSPKLGEMHKLKEEFREVFEKNTEGNEGLFALSDWLKKAMAYFPKSCQTIRRWIDEITAYFDNRTTQGTVEGINNKLKVIKRRGYGFRNFKNFSLRCLLNWHFAS
>NZ_CP011304.1|WP_103672725.1|3598665_3599558_+|IS630-family-transposase
MRPYSVDFRQKIIDVWKKEKISIRGLAQRFDVAKSFIQKLLKQHKETGDIRPRPQGGSPPTKLNSEQLIILIEIIESNNDATLEELSDLLYEKTQVKVSRATLGRLTQKLNYSFKKKTLHAAEKESDRVQQKRVEYWSQVREIEASKLIFIDESGVNLALLRLYARALIGRRDRGRKPQKRGRNISIISAISLEKVVASVNIYGAVDAVTFEGFILKEVLPKIKEGDCLLMDNAKIHLGEMVREIIEQEKARLIYLPPYSPEFSPIENFWSKVKAILRKLKARTYKDLIEGIELAML
>NZ_CP011304.1|WP_046663047.1|3595915_3598081_+|O-linked-N-acetylglucosamine-transferase
MSWQNEVKTALENNQYDIVSQFYEELIERETTEISHYWYLGLAYLLEDREEDAQATWLLVLSQAAESELSGWIKTLTQILDAEATRQENSQRLETSYLIRLHLQNLNPSFLNNLLHLMELEIQFQIFAMEKCHDWCVFELLENTATAAINLDLLLRVTEKVLIYPCTDTIHFLELAALHINNPEIIATKVISAIVNYAYQQKQSVFAINLVELCLRFLPEDLYLQNSLFNLYKTTTIDYKKSLEIADNFYKSCQTTTEKLLGISLVIAISQAKGDWGNLPKFIDELIQLIERQINAKQFNARPFIIDSILGVTICLPYYQDNPKINRYLQSKLAEIFQADVRTRYNYIAPVSSPKSPARKIKIGYIAYTLRRHSVGWLSRWLFHYHNRDKFEIYTYFVNQAADEITEKWFINNSDYSYNLPAKIEQITAQIRQDNLDILVDLDSLTNNTTCLVIALKPAPIQVTWLGLDASGIPAIDYFIADNYVLPENAEEIYSEKIIRLPNSYLSVDGFEVGVPTRRRTDLNIPDDAIIYLTVQSGLKRTLNMIYLQLQILQQVPNSYLLIKGFADKETIRELFLKSADELGISQDRLRFLPNDFNEETHRANLGIADIVLDTYPYSGATTTLETLWMGIPLVTRVGEQFAARNSYTFMKNAGISQGIAWSDEEYVQWGIKLGLDKNLREEVRWKLRKSRHTSPLWNSKQFTRNLETAYQQMWNIYCQS
>NZ_CP011304.1|WP_046663046.1|3593744_3595898_+|O-linked-N-acetylglucosamine-transferase
MSWHSQVEPAIIQGDFWQVSQFYEELIEREPLEISHYWYLGLAYLLEAREEEAQTTWLFVLSQGDEQEMNSWTVDLVNILDGEARRQVEVKNWQLSWVIRQHIYQINPDNLENLLYLVLLEIKLEYFYPQKLKDWQIVDLINSDKLENFDINLLLHTIYKLLDWPAQEVLDIIITLLKIDSQQSAILEIIEQHIEKIYYTDKTNAVILTLSCLDIIPDHLVLLHKIHQYYIDTGNFELALETANKIKNLSNDKAAKLYGIYLLLYTEILAGNWLNIDNKTQEYYQAIQNNLERGQCPMSNQAEVISITSPLAYLKDDLVGNRWLTNQLAKLFQEAVRKRFNQVTIESQKPKDVNKKLNIGYIAHTLRRHSVGFLSRWLIHYHQRDNFNIHLYLVNQVEDDITEQWFKNKVDKYNNLPANPQIIAEKINQDNIDILVDLDSITKDNTCRVMALKPAPIQITWLGLDATGIPAIDYFLVDNLVLEKNAQEFYQEKLWRLPNCYLAVDGFEIGIPTLTRQDLNIPADAITYLTLQVGLKRNPATIRLQMQIIKAVPNSYLLIKGAGSEKLINDLFISIAKEEGIDENRLRFLSGVANEEIHRANLQIADVVLDTYPYSGATTTLETLWMGIPVVTKVGQQWSSRNSYTFMTHGGISEGIAWSDEEYVQWGIKLGKDEQLRRKVIAKLDESRQTSPIWNARQFTKDVENAYRQMWQIYCES
>NZ_CP011304.1|WP_080949780.1|3592922_3593405_+|cytochrome-c
MSYIILHLPISSSGGGILGQKVAKCKEKLIFPSAACVNSQLVKPKFGLYRFLMVIIVVLFLISTFLITFHLAKMSDPYIKEVLSRQGNVSRGYEIFQINCAACHGQFADGIVGPSLEDVSRRKSRISLIEQVISGKTPPMPKFQPDTQAMADLLVYLENL
>NZ_CP011304.1|WP_046663045.1|3591832_3592894_-|mechanosensitive-ion-channel-family-protein
MNLLTRLEDWPYIILPITIVLSFLLLGWLVEQRVVSQLLSIAREKNLRFSEGVLRSLRGLSILWFGLLGLNIALSLPNLPLFPSLILLSQKFLLVAFLASATWAIAQLSVEILRVYTTGDDGISSLTSLFEFLAKVLIFSCGFLLILSSVGISITPLLTAFGIGGVSLGLALQNTLANLMSGINIITSKKVRPGDYIELRTGEAGYVRDVDLRCTVVEEITNNLLVIPNAQIISSSFRNYSLPDHSLLVPVEVGISYDSDLEKVEKITREVIQEITQLLQPNLGDYQPLIRYGKFDYYSILLTVYLKVVEEEFFQHLTIKHEFIKLLHRRYQQEGIKIPYPIFFPYPPTNPPS
>NZ_CP011304.1|WP_046663044.1|3591107_3591788_+|germination-protein
MPSSRSSDKISLPWIIGIGLALFTAGGATAWFAVHHLSSSQKTSENPIESPSPVPISKSPIVEPVSPGPVKTSPTATPAAIPVRETRQVYWLKVTDTGNQLVSQKITVQKADSRDRELTAVLKILLAGPSNSKDMTTIPPGTKLLDLKVDKTGIKINLSREFGNDDGPDMLIGRLAQIIYTTTAEDPNAKVWIQVEGKPLELLGEGHGLEVAQPMTRKFFEENYQL
>NZ_CP011304.1|WP_046663043.1|3590019_3590835_+|DUF2993-domain-containing-protein
MEWLTITLASVLTLLTPAGAIIDRVLADILRSQVQKVEQLAVRVDNTPNYQALQGKIDRVRISARGIYPLADVRIEKIELETEPISLDLRRLQQKNGNLAASLRRPAAGALHLVLTETNVNQALQSAAVKGPIQTLINNLIPSREEFGITKYQFSQANFNFLNNNRVALRLQLETQRLDEPAASLDLSLEVGFKLVQGRKIELIDPTATLNGRRLSSRLLKGFAEGISTQLDLKNFEKQGIIARLLQLQIDDDKLSIAAFGRIEPRSGNPN
>NZ_CP011304.1|WP_046663042.1|3589769_3590012_+|hypothetical-protein
MNYPIPTTPEEIAALRQRPVDEEMIAAVIAGIIRMARAQGQSLNDLTEEILAEDQVLDQVQRRWLSQLLTNAWQNLAEWV
>NZ_CP011304.1|WP_046663041.1|3587659_3589624_-|flavin-dependent-dehydrogenase
MREILYREIPTPDSSAVCQWLQSDWQPASGVKTNTPNGVRLRLSEALELSIFVWTLQRTTYLKVFRWGERSHYLETSLTRQLDRALQKRFPPQYTTIPNIDQKNQSIFTALEADYPLTVHYFRKMPQGEADLERLYWWEKRWRDSAKNPQQPQPVIFSSSEENDHPIAYDLIYIGGALGAIHAAQMAKLGYRVLLVERLPFGRMNREWNISRSEFQSLINLGLFTAEEFEELIFQEYLDGFNKFFDGNNPPHLKAKILHTPTVLNIAINSDKLLQSCGKKLQDHGGKILDQTEFIKANITANSVTVTLNHSGEIQQIKGRLLIDAMGSASPIAWQLNGVRAFDSVCPTVGAVVEGFEPVVWDSHYGDVLNSHGDISKGRQLIWELFPGEGKELTFYLFHYHQVHPDNPGSLLEMYEDFFTILPEYRQCDPEKLTWKKPTFGYIPGHFSTGKKDRIVSFDRILAIGDAASLQSPLIFTGFGSLVRNLERLTDLLDMALKHNLLTAKDLENVRAYQSNVAVTWLFSKGMMVPTGKTLPPQRINAMLNTFFGLLADEPPEVSETFIKDKTDWLTFSRLAIKAARKNPALLLWIAEMAGSQDLIRWLGSYLDFSLDGVKNLFFGSWFPQWLKNSQSWLEKDNPRLWLKLLSFNYGLRN
>NZ_CP011304.1|WP_046660896.1|3607003_3608152_-|IS4-family-transposase
MISELYQKVLENELGRARYLLLLMIVGTLQILKQAKLEILAEALPIPILFESRRKKLKRFLKLEILNIEKIWFLCLKEMLKQQQRFTTKGLAYIAIDRTSWGAINILMVSLIYDKRAIPIYWEILDKKGSSNLEEQQRVLEKTLTVLSGHKIVVLGDREFCSVSLGKWLQKQSLYFCLRQKKSTNVKTKEGIYQEMRELGLSPGTQLFLNDVNITKEQGFGQFNLAGKWKKTYGGFQTKEPWYILTNFVDLETAIIAYQKRFDIEEMFRDFKSGGYSLEGSQLAPQYLSKLIIVIAIAYTSATLQGKKIKDMGIQKYVTRPEKRYKGQRRHSSFYVGQHLYHWLQLHQMFQKNIEELMQISRYRLKDYIKGQRAISLALSTF
>NZ_CP011304.1|WP_046660474.1|3609111_3610608_+|IS5-family-transposase
MYRKSELPSTPPENFELPFEGKLSQDNRWVIMANLIPWSEFEAEYASLFSEEMGTPAKTFRTALGALIIKEKLGTSDRETVEQIKENPYLQYFLGFSSYSNEPRFEASMLVHFRERITLELINKVNRFMVKNSREIKEEENTEKKLESETQSQPENRGKLILDASCAPADISYPTDLNLLNQGRKQTEKIIDILYETLKGKLVQKPRTYRLLARKSYLEVAKKRKPTVKQRRKALKRQLQYLKRNLDHIEQLLAEGASLQSLKKRDYKLLLVVTEVYRQQLWMYQNNKQSIEDRIVSLTQPHIRPIVRGKAGKPVEFGAKFSASCIDGYIFLDRISWDNFNESGDLKAQIEAYYDYTGYYPESVHVDKIYRTRENRAWCKERGIRISGPPLGRPAKNVSKEQKKQATDDERIRNCIEGKFGQGKRRFSLGKVMAKLPHTSFSAIAITFLVMNLSNLLRQVFWAFLCLKWKNSTFSRSMIRISYNLKINQQLKLMLVAK
>NZ_CP011304.1|WP_046663050.1|3612814_3613087_-|CRISPR-associated-endonuclease-Cas2
MYFVISYDISDDKRRTKIHNTLKSYGQRVQYSVFECDLTDTQYAKLRGRLSKLIKPDTDSIRFYFLCACCRGKVERIGGELPRDNTIFFV
>NZ_CP011304.1|WP_046663051.1|3613099_3614104_-|type-I-D-CRISPR-associated-endonuclease-Cas1
MGTVYVTREDAFLGKNDERLTVKASKETILDVPLLNVDGVVLFGRGSLSPALVIELLERHIPLSFVTSTGRYLGRLEPEMTKNIFVRRAQWQAAGDSPKAIHLVRGFVRGKLKNYRNILLRRQRDRKELDLQTAIACLEAAIGSIETTSAIDSLRGLEGAGSAAYFSCFDSLILGDTFTFASRNRRPPRDPVNSLLSLGYALLRHDVQSAINLVGFDPYLGYLHYQRYGRPSLALDLMEEFRAIVVDAVVLNGVNHPYLTPEHFTTEPLSGAVSLTREGLQIFLRLYEQKKQSKFKHPVMSKQCTYQEAFEIQARLMAKYLMDETDKYPPLILK
>NZ_CP011304.1|WP_046663052.1|3614109_3614703_-|CRISPR-associated-protein-Cas4
MDESDYIPIAALNHYAYCPHRCWRMFVAGEFLNNSYTIEGTNLHERVHTVGAGNREEIWQIRAIWLKSDNYRLIGKADLIESHDGEFIPVEYKRGSKGEWDNDELQVCAQAICLEEMTGKRLDTGYIYYASSHQRQPVAIDLALRQRAIATIRAVETLIQTGKMPPAVYSPRCKGCSLFDRCLPRLTEKVQRYQEED
>NZ_CP011304.1|WP_046663053.1|3614705_3615539_-|CRISPR-associated-endoribonuclease-Cas6
MPYSLVLNLTPRSPIYPNFLTGRHLHALFLTLVSSVDQELGNILHASDADKAFTLSPLQMQSRRKTINFPRWRHEREIAPETPCWWRISLLDDRLFGKLTPLWLNLNPKQPWHLGSADLVITSVLATPQSVQPWANSCTYQYLYENASETNREFDFLFATPVTFRQGKFDSALPTRELVFNSLLSRWNRYSGISFDSIALESIFPSFFDIQTKLTDEAYKNQSIGCVGEIHYRLLGEVEPAKIKAINALADFALYAGVGRKTTMGMGMTRRISKDKR
>NZ_CP011304.1|WP_046663054.1|3615538_3616105_-|Uma2-family-endonuclease
MTLISSKSLTLPEFLSLTPPDGDITYELVDGEAIPKMSPKFFHSRLTGALFLLLDRWNQGRGEVGIEWAIVLSKNDRDWCPVPDLLYISPERLGDITLTDEACPVPPELVIEIISPEQSFSSLSEKAVDYLKAGVSRVWIVDPQAKQITIFYPDAPPAIKKGDDEMSDILLPDLTLTPGQIFAKARLS
>NZ_CP011304.1|WP_046663055.1|3616145_3618881_-|CRISPR-associated-helicase-Cas3'
MSKSNPQPFFKFGRVFFPGEPTIAPDKILFQPLGNHVGNVRQLARKWQDGNFSLERVIEGINLHDKAKPQTFKIRVETNKQGEFTKYTYSFKGHRFKVDNPQNLWVQALARGHHDYSTKEIIKDTYQLKKDTEYQKIFSKDPLQYAKELYILEMCDQIEAELACRVIGDDEQAKSRTFMDFTITKGTSEDSNHRVFYLDPYPFKEPTITLNFRSWTYNLSDEDKNQLQQLHENRKDKELGSKLNTLVKEWWKKNEHTISEDRAITAIIKPDNSNTYSPSEKSENAIFWWYEELANFQPNPMQEEVFQTMVKNQHPAFILKAPTGAGKFEAIIIPFLAMLSTKEDRPRLIIPLPARSLLEDQKQRCDKYLKQFSLLHKGREVSLVIDTGTEMNRYVYLDGEVKSSNNSRRHLYKGDIILTTIDKFIYRYFGYGDKQKSFIFPYRIYHGNTLICFDEAHTYDDISFTNFCSLVKALYEAGCSLVLMTATLSQNHLERFDYLADNMIDYIDVQDNLEKLNNFYQQILKQDYSNLKQFEFYEEPTNLQQKLTSIALEEWNSNPSHRIIVSVETVKDAIAIYEKIKQTLNIKFSEKKEFLFLYHGRLSDIPKTSHYSRTNLYQRLKERDENDQAYILVTTSAIEVGCDLNSTRLITQLCNPESLIQRAGRCNRKGNVEDAKIIVIGNNIPEFVNTLSEAELENYKTILKGLHDQNFDPKAIMNCVSTKQTIDDYRVVELFSLLQDYVYNADLTCQSAHEKGLVITRSWTPSVTLVYDDGKQGDSLEKIVKESPQIQVSIDRLILKKNNEGNYTNQYANVSVYEWIYDKEETRYKLEPLKYWGCAYSKELVIKVCAVQEGAISDSFEPYSYDHELGFKDLPGVFIKWRSNGYQERLQYNPTKDRSVVINYTSALTQD
>NZ_CP011304.1|WP_046663056.1|3618873_3619698_-|hypothetical-protein
MYCLTFKIIPTAAMTFRILPGSILNIATYPFVPPTTFSGFLRRIVMLSEGLDIPETSINKENPPYFTLPRQYIALGAYPVLDKWSGVHRTHRKGTRSFNHDVFSRLYIDGDRENFQLHTWEYFIAEELIGYVVSESKSSLEAFSNLQGVGCKIGKEGFAVIDEVSESIRLQRKILSAHPSTVVPMEALIQRNPCINRCDIYNLYRHEWSADQTQDEDKGLFDTERSPINGFIPFVAAYYPEKAHPLPTLDFYTDGNLQIPVALVELLQRESINV
>NZ_CP011304.1|WP_012266052.1|3619701_3620595_-|hypothetical-protein
MATESKVTTGLPKTDANKPRLHFDIYAILEGSQELYLGHEVQVNVNLVEIVKLSTKDGKEIEKCYISPTKRRGVERRCLLWSPVKSGELLGDKQNCGIPKTCAEPTCPICATFGALDPGKRTLIGRVTHGGGVAIQEIYPVEKQRAMHPALLVNRNDETPTPFRREYNQPGILYPVYNHALSITDQDFSAVAYAFLDSLPRIGSGNPKGIAIAETDDRTPLLVLDRYLSPRGKRPIVSPSETDPQKAINDFLYLALYPETNFTNHIQEAHFDRWIGNEALAKLQEYSAIFVDTVLQA

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Crispr_ID: NZ_CP011304_23

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011304_23

3608265-3608953

Unclear

I-D,II-B

Consensus_repeat	Method
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	PILER-CR
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CRISPRCasFinder
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CRT

9 spacers

cas2,cas1,cas4,cas6,cas3,cas5,cas7,cas8b5

The CRISPR arrays of NZ_CP011304_23

>merge|NZ_CP011304|23|3608265-3608953|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCCTTGCCCACTGACGCACAAAAGCAATTAAACAAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTTTCGCTTGATTGGTACTCCAGACAAGGAAAATGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTTTGGTGTTGCAAGAGTGTCCAGATTTGGTACGCCGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGTGGTATGTGAGCATTACCCATGATCAGGATTCGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAGAACAAAATATTGTCTATTCTATTACGAGAATAGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAAGTGCGATTGTGGTGGTCGGTGTTGCTGCAGTGTGGAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTAATGTCAATATCTCTGGAAGTTGGCAAAATAAGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCTTTTTCGCCATTGTCACGTCTTACACAGTCGATGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGTTATCAGTAATTAACCCATTTAGGAGTACCAAAAAATGACTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC

>NZ_CP011304|23|4|3608265-3608953|PILER-CR
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCTTGCCCACTGACGCACAAAAGCAATTAAACAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTTCGCTTGATTGGTACTCCAGACAAGGAAAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTTGGTGTTGCAAGAGTGTCCAGATTTGGTACGCCG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTGGTATGTGAGCATTACCCATGATCAGGATTC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGAACAAAATATTGTCTATTCTATTACGAGAATAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGTGCGATTGTGGTGGTCGGTGTTGCTGCAGTGTGGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAATGTCAATATCTCTGGAAGTTGGCAAAATAAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTTTTTCGCCATTGTCACGTCTTACACAGTCGAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTTATCAGTAATTAACCCATTTAGGAGTACCAAAAAATGACT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC

>NZ_CP011304|23|22|3608265-3608953|CRISPRCasFinder
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCTTGCCCACTGACGCACAAAAGCAATTAAACAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTTCGCTTGATTGGTACTCCAGACAAGGAAAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTTGGTGTTGCAAGAGTGTCCAGATTTGGTACGCCG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTGGTATGTGAGCATTACCCATGATCAGGATTC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGAACAAAATATTGTCTATTCTATTACGAGAATAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGTGCGATTGTGGTGGTCGGTGTTGCTGCAGTGTGGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAATGTCAATATCTCTGGAAGTTGGCAAAATAAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTTTTTCGCCATTGTCACGTCTTACACAGTCGAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTTATCAGTAATTAACCCATTTAGGAGTACCAAAAAATGACT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC

>NZ_CP011304|23|3|3608265-3608953|CRT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCTTGCCCACTGACGCACAAAAGCAATTAAACAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTTCGCTTGATTGGTACTCCAGACAAGGAAAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTTGGTGTTGCAAGAGTGTCCAGATTTGGTACGCCG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTGGTATGTGAGCATTACCCATGATCAGGATTC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGAACAAAATATTGTCTATTCTATTACGAGAATAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGTGCGATTGTGGTGGTCGGTGTTGCTGCAGTGTGGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAATGTCAATATCTCTGGAAGTTGGCAAAATAAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTTTTTCGCCATTGTCACGTCTTACACAGTCGAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GTTATCAGTAATTAACCCATTTAGGAGTACCAAAAAATGACT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011304.1\|WP_046663056.1\|3618873_3619698_-\|hypothetical-protein	cas5	cls000047_cas5_CAS-I-B	unknown
NZ_CP011304.1\|WP_012266052.1\|3619701_3620595_-\|hypothetical-protein	cas7	cls000038_cas7_CAS-I-B	unknown
NZ_CP011304.1\|WP_046663052.1\|3614109_3614703_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
NZ_CP011304.1\|WP_046663045.1\|3591832_3592894_-\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|366370
NZ_CP011304.1\|WP_046663055.1\|3616145_3618881_-\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP011304.1\|WP_046663053.1\|3614705_3615539_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
NZ_CP011304.1\|WP_046660474.1\|3609111_3610608_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|290319
NZ_CP011304.1\|WP_046663047.1\|3595915_3598081_+\|O-linked-N-acetylglucosamine-transferase	unknown	unknown	gnl\|CDD\|226428
NZ_CP011304.1\|WP_046663057.1\|3620597_3623129_-\|hypothetical-protein	cas8b5	mkCas0131_cas8b5_CAS-I-B	gnl\|CDD\|237177
NZ_CP011304.1\|WP_046663050.1\|3612814_3613087_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP011304.1\|WP_046663043.1\|3590019_3590835_+\|DUF2993-domain-containing-protein	unknown	unknown	gnl\|CDD\|378597
NZ_CP011304.1\|WP_046663042.1\|3589769_3590012_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224246
NZ_CP011304.1\|WP_046661002.1\|3599881_3601108_-\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|376574
NZ_CP011304.1\|WP_103672725.1\|3598665_3599558_+\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NZ_CP011304.1\|WP_046663044.1\|3591107_3591788_+\|germination-protein	unknown	unknown	gnl\|CDD\|227688
NZ_CP011304.1\|WP_046663046.1\|3593744_3595898_+\|O-linked-N-acetylglucosamine-transferase	unknown	unknown	gnl\|CDD\|226428
NZ_CP011304.1\|WP_046663054.1\|3615538_3616105_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NZ_CP011304.1\|WP_046663051.1\|3613099_3614104_-\|type-I-D-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274976
NZ_CP011304.1\|WP_046660896.1\|3607003_3608152_-\|IS4-family-transposase	unknown	unknown	unknown
NZ_CP011304.1\|WP_080949780.1\|3592922_3593405_+\|cytochrome-c	unknown	unknown	gnl\|CDD\|379187

Protein	Function_ID	Function_description	E-value
NZ_CP011304.1\|WP_046663052.1\|3614109_3614703_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	1.35866e-54
NZ_CP011304.1\|WP_046663045.1\|3591832_3592894_-\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	4.78128e-37
NZ_CP011304.1\|WP_046663055.1\|3616145_3618881_-\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	3.32697e-43
NZ_CP011304.1\|WP_046663053.1\|3614705_3615539_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.28864e-45
NZ_CP011304.1\|WP_046660474.1\|3609111_3610608_+\|IS5-family-transposase	gnl\|CDD\|290319	pfam13586, DDE_Tnp_1_2, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.0941e-34
NZ_CP011304.1\|WP_046663047.1\|3595915_3598081_+\|O-linked-N-acetylglucosamine-transferase	gnl\|CDD\|226428	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones].	3.38343e-162
NZ_CP011304.1\|WP_046663057.1\|3620597_3623129_-\|hypothetical-protein	gnl\|CDD\|237177	PRK12704, PRK12704, phosphodiesterase; Provisional.	0.00917603
NZ_CP011304.1\|WP_046663050.1\|3612814_3613087_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.25525e-37
NZ_CP011304.1\|WP_046663043.1\|3590019_3590835_+\|DUF2993-domain-containing-protein	gnl\|CDD\|378597	pfam11209, DUF2993, Protein of unknown function (DUF2993). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	1.67573e-22
NZ_CP011304.1\|WP_046663042.1\|3589769_3590012_+\|hypothetical-protein	gnl\|CDD\|224246	COG1327, COG1327, Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription].	0.00107048
NZ_CP011304.1\|WP_046661002.1\|3599881_3601108_-\|ISL3-family-transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	4.17478e-80
NZ_CP011304.1\|WP_103672725.1\|3598665_3599558_+\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.69658e-40
NZ_CP011304.1\|WP_046663044.1\|3591107_3591788_+\|germination-protein	gnl\|CDD\|227688	COG5401, COG5401, Spore germination protein [General function prediction only].	9.43183e-25
NZ_CP011304.1\|WP_046663046.1\|3593744_3595898_+\|O-linked-N-acetylglucosamine-transferase	gnl\|CDD\|226428	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones].	3.2671e-152
NZ_CP011304.1\|WP_046663054.1\|3615538_3616105_-\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	1.55985e-27
NZ_CP011304.1\|WP_046663051.1\|3613099_3614104_-\|type-I-D-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274976	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes a clade of Cas1 limited to the CYANO subtype of CRISPR/Cas system and most often the type found there.	2.59523e-141
NZ_CP011304.1\|WP_080949780.1\|3592922_3593405_+\|cytochrome-c	gnl\|CDD\|379187	pfam13442, Cytochrome_CBB3, Cytochrome C oxidase, cbb3-type, subunit III.	3.50185e-08

>NZ_CP011304.1|WP_046660896.1|3607003_3608152_-|IS4-family-transposase
MISELYQKVLENELGRARYLLLLMIVGTLQILKQAKLEILAEALPIPILFESRRKKLKRFLKLEILNIEKIWFLCLKEMLKQQQRFTTKGLAYIAIDRTSWGAINILMVSLIYDKRAIPIYWEILDKKGSSNLEEQQRVLEKTLTVLSGHKIVVLGDREFCSVSLGKWLQKQSLYFCLRQKKSTNVKTKEGIYQEMRELGLSPGTQLFLNDVNITKEQGFGQFNLAGKWKKTYGGFQTKEPWYILTNFVDLETAIIAYQKRFDIEEMFRDFKSGGYSLEGSQLAPQYLSKLIIVIAIAYTSATLQGKKIKDMGIQKYVTRPEKRYKGQRRHSSFYVGQHLYHWLQLHQMFQKNIEELMQISRYRLKDYIKGQRAISLALSTF
>NZ_CP011304.1|WP_046661002.1|3599881_3601108_-|ISL3-family-transposase
MPSNPQLKLMTELLHLEGVVVTNYQIITDIGIVLHLENMSRESQCIHCGSKTEKVHQNNELTIRDLPFGEQALYLRINRRQMRCEKCGKKFTEELNYLPKKRTYTDRFRKKIVAEVLNSDLKNTAERNGVSEQEIETMLKDLGEELITAKPQGLKKLGIDEIAMIKGKGNYYAVLVNIDTGKIIGLGEKRTEEALTEYLKHWGEEVLSQIEEVSIDLWIGYKNVAEKLMPQAQIVGDRFHVMKQVNNELDEARKEVKREAAKIKNKKNKENILAGIAKSKYALLKNEGDLVEKERKKLEEIYKVSPKLGEMHKLKEEFREVFEKNTEGNEGLFALSDWLKKAMAYFPKSCQTIRRWIDEITAYFDNRTTQGTVEGINNKLKVIKRRGYGFRNFKNFSLRCLLNWHFAS
>NZ_CP011304.1|WP_103672725.1|3598665_3599558_+|IS630-family-transposase
MRPYSVDFRQKIIDVWKKEKISIRGLAQRFDVAKSFIQKLLKQHKETGDIRPRPQGGSPPTKLNSEQLIILIEIIESNNDATLEELSDLLYEKTQVKVSRATLGRLTQKLNYSFKKKTLHAAEKESDRVQQKRVEYWSQVREIEASKLIFIDESGVNLALLRLYARALIGRRDRGRKPQKRGRNISIISAISLEKVVASVNIYGAVDAVTFEGFILKEVLPKIKEGDCLLMDNAKIHLGEMVREIIEQEKARLIYLPPYSPEFSPIENFWSKVKAILRKLKARTYKDLIEGIELAML
>NZ_CP011304.1|WP_046663047.1|3595915_3598081_+|O-linked-N-acetylglucosamine-transferase
MSWQNEVKTALENNQYDIVSQFYEELIERETTEISHYWYLGLAYLLEDREEDAQATWLLVLSQAAESELSGWIKTLTQILDAEATRQENSQRLETSYLIRLHLQNLNPSFLNNLLHLMELEIQFQIFAMEKCHDWCVFELLENTATAAINLDLLLRVTEKVLIYPCTDTIHFLELAALHINNPEIIATKVISAIVNYAYQQKQSVFAINLVELCLRFLPEDLYLQNSLFNLYKTTTIDYKKSLEIADNFYKSCQTTTEKLLGISLVIAISQAKGDWGNLPKFIDELIQLIERQINAKQFNARPFIIDSILGVTICLPYYQDNPKINRYLQSKLAEIFQADVRTRYNYIAPVSSPKSPARKIKIGYIAYTLRRHSVGWLSRWLFHYHNRDKFEIYTYFVNQAADEITEKWFINNSDYSYNLPAKIEQITAQIRQDNLDILVDLDSLTNNTTCLVIALKPAPIQVTWLGLDASGIPAIDYFIADNYVLPENAEEIYSEKIIRLPNSYLSVDGFEVGVPTRRRTDLNIPDDAIIYLTVQSGLKRTLNMIYLQLQILQQVPNSYLLIKGFADKETIRELFLKSADELGISQDRLRFLPNDFNEETHRANLGIADIVLDTYPYSGATTTLETLWMGIPLVTRVGEQFAARNSYTFMKNAGISQGIAWSDEEYVQWGIKLGLDKNLREEVRWKLRKSRHTSPLWNSKQFTRNLETAYQQMWNIYCQS
>NZ_CP011304.1|WP_046663046.1|3593744_3595898_+|O-linked-N-acetylglucosamine-transferase
MSWHSQVEPAIIQGDFWQVSQFYEELIEREPLEISHYWYLGLAYLLEAREEEAQTTWLFVLSQGDEQEMNSWTVDLVNILDGEARRQVEVKNWQLSWVIRQHIYQINPDNLENLLYLVLLEIKLEYFYPQKLKDWQIVDLINSDKLENFDINLLLHTIYKLLDWPAQEVLDIIITLLKIDSQQSAILEIIEQHIEKIYYTDKTNAVILTLSCLDIIPDHLVLLHKIHQYYIDTGNFELALETANKIKNLSNDKAAKLYGIYLLLYTEILAGNWLNIDNKTQEYYQAIQNNLERGQCPMSNQAEVISITSPLAYLKDDLVGNRWLTNQLAKLFQEAVRKRFNQVTIESQKPKDVNKKLNIGYIAHTLRRHSVGFLSRWLIHYHQRDNFNIHLYLVNQVEDDITEQWFKNKVDKYNNLPANPQIIAEKINQDNIDILVDLDSITKDNTCRVMALKPAPIQITWLGLDATGIPAIDYFLVDNLVLEKNAQEFYQEKLWRLPNCYLAVDGFEIGIPTLTRQDLNIPADAITYLTLQVGLKRNPATIRLQMQIIKAVPNSYLLIKGAGSEKLINDLFISIAKEEGIDENRLRFLSGVANEEIHRANLQIADVVLDTYPYSGATTTLETLWMGIPVVTKVGQQWSSRNSYTFMTHGGISEGIAWSDEEYVQWGIKLGKDEQLRRKVIAKLDESRQTSPIWNARQFTKDVENAYRQMWQIYCES
>NZ_CP011304.1|WP_080949780.1|3592922_3593405_+|cytochrome-c
MSYIILHLPISSSGGGILGQKVAKCKEKLIFPSAACVNSQLVKPKFGLYRFLMVIIVVLFLISTFLITFHLAKMSDPYIKEVLSRQGNVSRGYEIFQINCAACHGQFADGIVGPSLEDVSRRKSRISLIEQVISGKTPPMPKFQPDTQAMADLLVYLENL
>NZ_CP011304.1|WP_046663045.1|3591832_3592894_-|mechanosensitive-ion-channel-family-protein
MNLLTRLEDWPYIILPITIVLSFLLLGWLVEQRVVSQLLSIAREKNLRFSEGVLRSLRGLSILWFGLLGLNIALSLPNLPLFPSLILLSQKFLLVAFLASATWAIAQLSVEILRVYTTGDDGISSLTSLFEFLAKVLIFSCGFLLILSSVGISITPLLTAFGIGGVSLGLALQNTLANLMSGINIITSKKVRPGDYIELRTGEAGYVRDVDLRCTVVEEITNNLLVIPNAQIISSSFRNYSLPDHSLLVPVEVGISYDSDLEKVEKITREVIQEITQLLQPNLGDYQPLIRYGKFDYYSILLTVYLKVVEEEFFQHLTIKHEFIKLLHRRYQQEGIKIPYPIFFPYPPTNPPS
>NZ_CP011304.1|WP_046663044.1|3591107_3591788_+|germination-protein
MPSSRSSDKISLPWIIGIGLALFTAGGATAWFAVHHLSSSQKTSENPIESPSPVPISKSPIVEPVSPGPVKTSPTATPAAIPVRETRQVYWLKVTDTGNQLVSQKITVQKADSRDRELTAVLKILLAGPSNSKDMTTIPPGTKLLDLKVDKTGIKINLSREFGNDDGPDMLIGRLAQIIYTTTAEDPNAKVWIQVEGKPLELLGEGHGLEVAQPMTRKFFEENYQL
>NZ_CP011304.1|WP_046663043.1|3590019_3590835_+|DUF2993-domain-containing-protein
MEWLTITLASVLTLLTPAGAIIDRVLADILRSQVQKVEQLAVRVDNTPNYQALQGKIDRVRISARGIYPLADVRIEKIELETEPISLDLRRLQQKNGNLAASLRRPAAGALHLVLTETNVNQALQSAAVKGPIQTLINNLIPSREEFGITKYQFSQANFNFLNNNRVALRLQLETQRLDEPAASLDLSLEVGFKLVQGRKIELIDPTATLNGRRLSSRLLKGFAEGISTQLDLKNFEKQGIIARLLQLQIDDDKLSIAAFGRIEPRSGNPN
>NZ_CP011304.1|WP_046663042.1|3589769_3590012_+|hypothetical-protein
MNYPIPTTPEEIAALRQRPVDEEMIAAVIAGIIRMARAQGQSLNDLTEEILAEDQVLDQVQRRWLSQLLTNAWQNLAEWV
>NZ_CP011304.1|WP_046660474.1|3609111_3610608_+|IS5-family-transposase
MYRKSELPSTPPENFELPFEGKLSQDNRWVIMANLIPWSEFEAEYASLFSEEMGTPAKTFRTALGALIIKEKLGTSDRETVEQIKENPYLQYFLGFSSYSNEPRFEASMLVHFRERITLELINKVNRFMVKNSREIKEEENTEKKLESETQSQPENRGKLILDASCAPADISYPTDLNLLNQGRKQTEKIIDILYETLKGKLVQKPRTYRLLARKSYLEVAKKRKPTVKQRRKALKRQLQYLKRNLDHIEQLLAEGASLQSLKKRDYKLLLVVTEVYRQQLWMYQNNKQSIEDRIVSLTQPHIRPIVRGKAGKPVEFGAKFSASCIDGYIFLDRISWDNFNESGDLKAQIEAYYDYTGYYPESVHVDKIYRTRENRAWCKERGIRISGPPLGRPAKNVSKEQKKQATDDERIRNCIEGKFGQGKRRFSLGKVMAKLPHTSFSAIAITFLVMNLSNLLRQVFWAFLCLKWKNSTFSRSMIRISYNLKINQQLKLMLVAK
>NZ_CP011304.1|WP_046663050.1|3612814_3613087_-|CRISPR-associated-endonuclease-Cas2
MYFVISYDISDDKRRTKIHNTLKSYGQRVQYSVFECDLTDTQYAKLRGRLSKLIKPDTDSIRFYFLCACCRGKVERIGGELPRDNTIFFV
>NZ_CP011304.1|WP_046663051.1|3613099_3614104_-|type-I-D-CRISPR-associated-endonuclease-Cas1
MGTVYVTREDAFLGKNDERLTVKASKETILDVPLLNVDGVVLFGRGSLSPALVIELLERHIPLSFVTSTGRYLGRLEPEMTKNIFVRRAQWQAAGDSPKAIHLVRGFVRGKLKNYRNILLRRQRDRKELDLQTAIACLEAAIGSIETTSAIDSLRGLEGAGSAAYFSCFDSLILGDTFTFASRNRRPPRDPVNSLLSLGYALLRHDVQSAINLVGFDPYLGYLHYQRYGRPSLALDLMEEFRAIVVDAVVLNGVNHPYLTPEHFTTEPLSGAVSLTREGLQIFLRLYEQKKQSKFKHPVMSKQCTYQEAFEIQARLMAKYLMDETDKYPPLILK
>NZ_CP011304.1|WP_046663052.1|3614109_3614703_-|CRISPR-associated-protein-Cas4
MDESDYIPIAALNHYAYCPHRCWRMFVAGEFLNNSYTIEGTNLHERVHTVGAGNREEIWQIRAIWLKSDNYRLIGKADLIESHDGEFIPVEYKRGSKGEWDNDELQVCAQAICLEEMTGKRLDTGYIYYASSHQRQPVAIDLALRQRAIATIRAVETLIQTGKMPPAVYSPRCKGCSLFDRCLPRLTEKVQRYQEED
>NZ_CP011304.1|WP_046663053.1|3614705_3615539_-|CRISPR-associated-endoribonuclease-Cas6
MPYSLVLNLTPRSPIYPNFLTGRHLHALFLTLVSSVDQELGNILHASDADKAFTLSPLQMQSRRKTINFPRWRHEREIAPETPCWWRISLLDDRLFGKLTPLWLNLNPKQPWHLGSADLVITSVLATPQSVQPWANSCTYQYLYENASETNREFDFLFATPVTFRQGKFDSALPTRELVFNSLLSRWNRYSGISFDSIALESIFPSFFDIQTKLTDEAYKNQSIGCVGEIHYRLLGEVEPAKIKAINALADFALYAGVGRKTTMGMGMTRRISKDKR
>NZ_CP011304.1|WP_046663054.1|3615538_3616105_-|Uma2-family-endonuclease
MTLISSKSLTLPEFLSLTPPDGDITYELVDGEAIPKMSPKFFHSRLTGALFLLLDRWNQGRGEVGIEWAIVLSKNDRDWCPVPDLLYISPERLGDITLTDEACPVPPELVIEIISPEQSFSSLSEKAVDYLKAGVSRVWIVDPQAKQITIFYPDAPPAIKKGDDEMSDILLPDLTLTPGQIFAKARLS
>NZ_CP011304.1|WP_046663055.1|3616145_3618881_-|CRISPR-associated-helicase-Cas3'
MSKSNPQPFFKFGRVFFPGEPTIAPDKILFQPLGNHVGNVRQLARKWQDGNFSLERVIEGINLHDKAKPQTFKIRVETNKQGEFTKYTYSFKGHRFKVDNPQNLWVQALARGHHDYSTKEIIKDTYQLKKDTEYQKIFSKDPLQYAKELYILEMCDQIEAELACRVIGDDEQAKSRTFMDFTITKGTSEDSNHRVFYLDPYPFKEPTITLNFRSWTYNLSDEDKNQLQQLHENRKDKELGSKLNTLVKEWWKKNEHTISEDRAITAIIKPDNSNTYSPSEKSENAIFWWYEELANFQPNPMQEEVFQTMVKNQHPAFILKAPTGAGKFEAIIIPFLAMLSTKEDRPRLIIPLPARSLLEDQKQRCDKYLKQFSLLHKGREVSLVIDTGTEMNRYVYLDGEVKSSNNSRRHLYKGDIILTTIDKFIYRYFGYGDKQKSFIFPYRIYHGNTLICFDEAHTYDDISFTNFCSLVKALYEAGCSLVLMTATLSQNHLERFDYLADNMIDYIDVQDNLEKLNNFYQQILKQDYSNLKQFEFYEEPTNLQQKLTSIALEEWNSNPSHRIIVSVETVKDAIAIYEKIKQTLNIKFSEKKEFLFLYHGRLSDIPKTSHYSRTNLYQRLKERDENDQAYILVTTSAIEVGCDLNSTRLITQLCNPESLIQRAGRCNRKGNVEDAKIIVIGNNIPEFVNTLSEAELENYKTILKGLHDQNFDPKAIMNCVSTKQTIDDYRVVELFSLLQDYVYNADLTCQSAHEKGLVITRSWTPSVTLVYDDGKQGDSLEKIVKESPQIQVSIDRLILKKNNEGNYTNQYANVSVYEWIYDKEETRYKLEPLKYWGCAYSKELVIKVCAVQEGAISDSFEPYSYDHELGFKDLPGVFIKWRSNGYQERLQYNPTKDRSVVINYTSALTQD
>NZ_CP011304.1|WP_046663056.1|3618873_3619698_-|hypothetical-protein
MYCLTFKIIPTAAMTFRILPGSILNIATYPFVPPTTFSGFLRRIVMLSEGLDIPETSINKENPPYFTLPRQYIALGAYPVLDKWSGVHRTHRKGTRSFNHDVFSRLYIDGDRENFQLHTWEYFIAEELIGYVVSESKSSLEAFSNLQGVGCKIGKEGFAVIDEVSESIRLQRKILSAHPSTVVPMEALIQRNPCINRCDIYNLYRHEWSADQTQDEDKGLFDTERSPINGFIPFVAAYYPEKAHPLPTLDFYTDGNLQIPVALVELLQRESINV
>NZ_CP011304.1|WP_012266052.1|3619701_3620595_-|hypothetical-protein
MATESKVTTGLPKTDANKPRLHFDIYAILEGSQELYLGHEVQVNVNLVEIVKLSTKDGKEIEKCYISPTKRRGVERRCLLWSPVKSGELLGDKQNCGIPKTCAEPTCPICATFGALDPGKRTLIGRVTHGGGVAIQEIYPVEKQRAMHPALLVNRNDETPTPFRREYNQPGILYPVYNHALSITDQDFSAVAYAFLDSLPRIGSGNPKGIAIAETDDRTPLLVLDRYLSPRGKRPIVSPSETDPQKAINDFLYLALYPETNFTNHIQEAHFDRWIGNEALAKLQEYSAIFVDTVLQA
>NZ_CP011304.1|WP_046663057.1|3620597_3623129_-|hypothetical-protein
MSIKQLSLFENVSPEQDTKAVTTSEEISELEITILLSALTANAIAQTDSTLISALADDPRAIAIAKTFDCPKLVRQLRLSQPQKESEFIKPTFQGNQVFYREREIGEIQLVYKSPSPGELQAKLTHESTIDRFLEFLQKKYQIVSLHESNYHVQIFIPQTQQSHNIEELWIEFITKVIFSIYGDFQYQLSGLMQTFITMLKSVPLAGRGFSTLEIPIITRDQAKVLAAFYLAIFEQVKDRQEKRETEIVQLIEQIKSEELNSKDLESTEKKLKSKQEMQAKEFNKYRDYFQKVLSKLLDEQRAIYHERRNLDEQLGKTGLSKAQVSKLQKQKDKIESQIIFQEDSIEEKQRFLEESDGNPFEFIEKQKQTDLLKPIQAIAKSFNKTATEQINSTRGDIFTQCILEMYRLLENPKLETIPEPLLTINPKILAARTAGDDGKDFCYSCGVTLDAKTVRWRVARFMFERPSQRRQSSSSEDRPFICSSCSVLSFASPLKVTDDSIILRLESQDDRGVTKVKIKDYLRMLTNKEVHLSSGCYIALTSEKTITGDTASKKLGQFQYALAKVASIFPLEVIKDFKFVLQLQRTEKVLVSRQLIFIKGLIEGYDQSIIVSGKDINLKLGDAIRYVQQDSPYLADYTLLKASSISDRLLLERVREQYLQTIIQDIQGETMTIDSLWKRAKLYEDVAALTGLTYAFAQSLESTAKKLMKPEDAEREVSKLIEKVDDPVAFSYYATLGDEKKISVQARLYHNPDNYFIYEQAKKMLENKLEITNREEVDNSGKKWLVFYADDITKSYAYFANPDQVGNYAQEKEWKNLTYNLKLSLYTRFPELVRKLSSKGDK

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Crispr_ID: NZ_CP011304_24

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011304_24

3610677-3612581

Unclear

I-D,II-B

Consensus_repeat	Method
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	PILER-CR
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CRISPRCasFinder
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CRT

26 spacers

cas2,cas1,cas4,cas6,cas3,cas5,cas7,cas8b5

The CRISPR arrays of NZ_CP011304_24

>merge|NZ_CP011304|24|3610677-3612581|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTAGAGCGTCTAGGAGGGCTGCTTATGGCGTAATCGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACACTCGCTAAAGTCTTTGGGGGGAGATGTAGAAATGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACATGGGTTAGTCTGTGGGGATAGTATAGAGAAAACTGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACACAGACTCAACCTTATCAGCAATCTCAACGGTATTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAAGATCGATCTGATCGAGCGATCATCTTCTTTCTTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACATTTAGTGGAATTGGCTAATCAAGCTGGTGATGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTGCGCTTTTGATCTCAATAACTCAGGATTTAATAGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGAAACCGAAGATTAATTTTATCAGACTCAAACCTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTGCCGAAAGGCAAATTCGCAACTTTTGCGGATTTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAAGCTTTCTTTCAGTACCCGGCTCACAAGCCTGAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTTATTTGATTCCGATAAGCTATTAGAGCAGTTACAAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCTTCTTGTCTGAGGATACTAAATAATCTAGGTTTTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAACGGACGCGATCGGAACCGTAACGGGTGAGGGAATGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAAAAGACAAGCTTTTGGGGACTTGGCAAAAAGCCAAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGACTTAAGGCCGTCATGGCAGACCGGGATGTAAATGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGCATTAGATGATTTACTGCAATCCCTTGAGGGATTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGCCGTCAAGGCTCAACCCTGCTAACTGGTAAACTCGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACTAGATGGTTTTTTAGGGTGTCTAGAATACTGTTTAGGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCCTTCCTTGCTTTAAGCTTGGCAGCGTACTTGTCTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCTTAATAGCGAGTCACCCTTGTCGGGGTTAGTCATTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGGAAATTTCCCCACTGAGAAAGCAGTCCATTAGCGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCGTTGACGGCTGCCGTCCGGGAACCGGCGATGAGAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAGTCTTCTGGCAATTAGGCCGCGCCCTAAAATTGTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACCCTCACTTTTATACGATTTTATTAATCAATGCCTAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACAAATTACGGTTTTTTCTGGATCGGCGCGAAGGTTGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAACGAGATCACTTTTACTAATATCCTACTCCAAAAAAGTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC

>NZ_CP011304|24|5|3610677-3612581|PILER-CR
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAGAGCGTCTAGGAGGGCTGCTTATGGCGTAATC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACTCGCTAAAGTCTTTGGGGGGAGATGTAGAAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATGGGTTAGTCTGTGGGGATAGTATAGAGAAAACTG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACAGACTCAACCTTATCAGCAATCTCAACGGTATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGATCGATCTGATCGAGCGATCATCTTCTTTCTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATTTAGTGGAATTGGCTAATCAAGCTGGTGATG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TGCGCTTTTGATCTCAATAACTCAGGATTTAATAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GAAACCGAAGATTAATTTTATCAGACTCAAACCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TGCCGAAAGGCAAATTCGCAACTTTTGCGGATTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGCTTTCTTTCAGTACCCGGCTCACAAGCCTGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTATTTGATTCCGATAAGCTATTAGAGCAGTTACAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTTCTTGTCTGAGGATACTAAATAATCTAGGTTTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AACGGACGCGATCGGAACCGTAACGGGTGAGGGAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAAAGACAAGCTTTTGGGGACTTGGCAAAAAGCCAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GACTTAAGGCCGTCATGGCAGACCGGGATGTAAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GCATTAGATGATTTACTGCAATCCCTTGAGGGATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GCCGTCAAGGCTCAACCCTGCTAACTGGTAAACTC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAGATGGTTTTTTAGGGTGTCTAGAATACTGTTTAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCTTCCTTGCTTTAAGCTTGGCAGCGTACTTGTCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTTAATAGCGAGTCACCCTTGTCGGGGTTAGTCATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GGAAATTTCCCCACTGAGAAAGCAGTCCATTAGC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CGTTGACGGCTGCCGTCCGGGAACCGGCGATGAGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGTCTTCTGGCAATTAGGCCGCGCCCTAAAATTGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCTCACTTTTATACGATTTTATTAATCAATGCCTA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAATTACGGTTTTTTCTGGATCGGCGCGAAGGTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GAGATCACTTTTACTAATATCCTACTCCAAAAAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC

>NZ_CP011304|24|23|3610677-3612581|CRISPRCasFinder
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAGAGCGTCTAGGAGGGCTGCTTATGGCGTAATC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACTCGCTAAAGTCTTTGGGGGGAGATGTAGAAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATGGGTTAGTCTGTGGGGATAGTATAGAGAAAACTG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACAGACTCAACCTTATCAGCAATCTCAACGGTATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGATCGATCTGATCGAGCGATCATCTTCTTTCTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATTTAGTGGAATTGGCTAATCAAGCTGGTGATG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TGCGCTTTTGATCTCAATAACTCAGGATTTAATAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GAAACCGAAGATTAATTTTATCAGACTCAAACCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TGCCGAAAGGCAAATTCGCAACTTTTGCGGATTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGCTTTCTTTCAGTACCCGGCTCACAAGCCTGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTATTTGATTCCGATAAGCTATTAGAGCAGTTACAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTTCTTGTCTGAGGATACTAAATAATCTAGGTTTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AACGGACGCGATCGGAACCGTAACGGGTGAGGGAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAAAGACAAGCTTTTGGGGACTTGGCAAAAAGCCAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GACTTAAGGCCGTCATGGCAGACCGGGATGTAAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GCATTAGATGATTTACTGCAATCCCTTGAGGGATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GCCGTCAAGGCTCAACCCTGCTAACTGGTAAACTC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAGATGGTTTTTTAGGGTGTCTAGAATACTGTTTAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCTTCCTTGCTTTAAGCTTGGCAGCGTACTTGTCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTTAATAGCGAGTCACCCTTGTCGGGGTTAGTCATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GGAAATTTCCCCACTGAGAAAGCAGTCCATTAGC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CGTTGACGGCTGCCGTCCGGGAACCGGCGATGAGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGTCTTCTGGCAATTAGGCCGCGCCCTAAAATTGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCTCACTTTTATACGATTTTATTAATCAATGCCTA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAATTACGGTTTTTTCTGGATCGGCGCGAAGGTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GAGATCACTTTTACTAATATCCTACTCCAAAAAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC

>NZ_CP011304|24|4|3610677-3612581|CRT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAGAGCGTCTAGGAGGGCTGCTTATGGCGTAATC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACTCGCTAAAGTCTTTGGGGGGAGATGTAGAAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATGGGTTAGTCTGTGGGGATAGTATAGAGAAAACTG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ACAGACTCAACCTTATCAGCAATCTCAACGGTATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGATCGATCTGATCGAGCGATCATCTTCTTTCTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	ATTTAGTGGAATTGGCTAATCAAGCTGGTGATG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TGCGCTTTTGATCTCAATAACTCAGGATTTAATAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GAAACCGAAGATTAATTTTATCAGACTCAAACCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TGCCGAAAGGCAAATTCGCAACTTTTGCGGATTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAGCTTTCTTTCAGTACCCGGCTCACAAGCCTGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TTATTTGATTCCGATAAGCTATTAGAGCAGTTACAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTTCTTGTCTGAGGATACTAAATAATCTAGGTTTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AACGGACGCGATCGGAACCGTAACGGGTGAGGGAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAAAGACAAGCTTTTGGGGACTTGGCAAAAAGCCAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GACTTAAGGCCGTCATGGCAGACCGGGATGTAAAT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GCATTAGATGATTTACTGCAATCCCTTGAGGGATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GCCGTCAAGGCTCAACCCTGCTAACTGGTAAACTC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	TAGATGGTTTTTTAGGGTGTCTAGAATACTGTTTAG
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCTTCCTTGCTTTAAGCTTGGCAGCGTACTTGTCT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CTTAATAGCGAGTCACCCTTGTCGGGGTTAGTCATT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GGAAATTTCCCCACTGAGAAAGCAGTCCATTAGC
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CGTTGACGGCTGCCGTCCGGGAACCGGCGATGAGA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AGTCTTCTGGCAATTAGGCCGCGCCCTAAAATTGT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	CCTCACTTTTATACGATTTTATTAATCAATGCCTA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	AAATTACGGTTTTTTCTGGATCGGCGCGAAGGTT
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC	GAGATCACTTTTACTAATATCCTACTCCAAAAAA
GTTTCAATCCCTAATAGGGTTTAAGATTAATTGGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011304.1\|WP_046663056.1\|3618873_3619698_-\|hypothetical-protein	cas5	cls000047_cas5_CAS-I-B	unknown
NZ_CP011304.1\|WP_012266052.1\|3619701_3620595_-\|hypothetical-protein	cas7	cls000038_cas7_CAS-I-B	unknown
NZ_CP011304.1\|WP_046663052.1\|3614109_3614703_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
NZ_CP011304.1\|WP_046663045.1\|3591832_3592894_-\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|366370
NZ_CP011304.1\|WP_158524813.1\|3623216_3623360_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046663055.1\|3616145_3618881_-\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP011304.1\|WP_046663053.1\|3614705_3615539_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
NZ_CP011304.1\|WP_046660474.1\|3609111_3610608_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|290319
NZ_CP011304.1\|WP_046663047.1\|3595915_3598081_+\|O-linked-N-acetylglucosamine-transferase	unknown	unknown	gnl\|CDD\|226428
NZ_CP011304.1\|WP_046663057.1\|3620597_3623129_-\|hypothetical-protein	cas8b5	mkCas0131_cas8b5_CAS-I-B	gnl\|CDD\|237177
NZ_CP011304.1\|WP_046663050.1\|3612814_3613087_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP011304.1\|WP_046663043.1\|3590019_3590835_+\|DUF2993-domain-containing-protein	unknown	unknown	gnl\|CDD\|378597
NZ_CP011304.1\|WP_046661002.1\|3599881_3601108_-\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|376574
NZ_CP011304.1\|WP_103672725.1\|3598665_3599558_+\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NZ_CP011304.1\|WP_046663044.1\|3591107_3591788_+\|germination-protein	unknown	unknown	gnl\|CDD\|227688
NZ_CP011304.1\|WP_046663046.1\|3593744_3595898_+\|O-linked-N-acetylglucosamine-transferase	unknown	unknown	gnl\|CDD\|226428
NZ_CP011304.1\|WP_046663054.1\|3615538_3616105_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NZ_CP011304.1\|WP_046663051.1\|3613099_3614104_-\|type-I-D-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274976
NZ_CP011304.1\|WP_046660896.1\|3607003_3608152_-\|IS4-family-transposase	unknown	unknown	unknown
NZ_CP011304.1\|WP_080949780.1\|3592922_3593405_+\|cytochrome-c	unknown	unknown	gnl\|CDD\|379187

Protein	Function_ID	Function_description	E-value
NZ_CP011304.1\|WP_046663052.1\|3614109_3614703_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	1.35866e-54
NZ_CP011304.1\|WP_046663045.1\|3591832_3592894_-\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	4.78128e-37
NZ_CP011304.1\|WP_046663055.1\|3616145_3618881_-\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	3.32697e-43
NZ_CP011304.1\|WP_046663053.1\|3614705_3615539_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.28864e-45
NZ_CP011304.1\|WP_046663044.1\|3591107_3591788_+\|germination-protein	gnl\|CDD\|227688	COG5401, COG5401, Spore germination protein [General function prediction only].	9.43183e-25
NZ_CP011304.1\|WP_046663047.1\|3595915_3598081_+\|O-linked-N-acetylglucosamine-transferase	gnl\|CDD\|226428	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones].	3.38343e-162
NZ_CP011304.1\|WP_046663057.1\|3620597_3623129_-\|hypothetical-protein	gnl\|CDD\|237177	PRK12704, PRK12704, phosphodiesterase; Provisional.	0.00917603
NZ_CP011304.1\|WP_046663050.1\|3612814_3613087_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.25525e-37
NZ_CP011304.1\|WP_046663043.1\|3590019_3590835_+\|DUF2993-domain-containing-protein	gnl\|CDD\|378597	pfam11209, DUF2993, Protein of unknown function (DUF2993). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	1.67573e-22
NZ_CP011304.1\|WP_046661002.1\|3599881_3601108_-\|ISL3-family-transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	4.17478e-80
NZ_CP011304.1\|WP_103672725.1\|3598665_3599558_+\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.69658e-40
NZ_CP011304.1\|WP_046660474.1\|3609111_3610608_+\|IS5-family-transposase	gnl\|CDD\|290319	pfam13586, DDE_Tnp_1_2, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.0941e-34
NZ_CP011304.1\|WP_046663046.1\|3593744_3595898_+\|O-linked-N-acetylglucosamine-transferase	gnl\|CDD\|226428	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones].	3.2671e-152
NZ_CP011304.1\|WP_046663054.1\|3615538_3616105_-\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	1.55985e-27
NZ_CP011304.1\|WP_046663051.1\|3613099_3614104_-\|type-I-D-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274976	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes a clade of Cas1 limited to the CYANO subtype of CRISPR/Cas system and most often the type found there.	2.59523e-141
NZ_CP011304.1\|WP_080949780.1\|3592922_3593405_+\|cytochrome-c	gnl\|CDD\|379187	pfam13442, Cytochrome_CBB3, Cytochrome C oxidase, cbb3-type, subunit III.	3.50185e-08

>NZ_CP011304.1|WP_046660474.1|3609111_3610608_+|IS5-family-transposase
MYRKSELPSTPPENFELPFEGKLSQDNRWVIMANLIPWSEFEAEYASLFSEEMGTPAKTFRTALGALIIKEKLGTSDRETVEQIKENPYLQYFLGFSSYSNEPRFEASMLVHFRERITLELINKVNRFMVKNSREIKEEENTEKKLESETQSQPENRGKLILDASCAPADISYPTDLNLLNQGRKQTEKIIDILYETLKGKLVQKPRTYRLLARKSYLEVAKKRKPTVKQRRKALKRQLQYLKRNLDHIEQLLAEGASLQSLKKRDYKLLLVVTEVYRQQLWMYQNNKQSIEDRIVSLTQPHIRPIVRGKAGKPVEFGAKFSASCIDGYIFLDRISWDNFNESGDLKAQIEAYYDYTGYYPESVHVDKIYRTRENRAWCKERGIRISGPPLGRPAKNVSKEQKKQATDDERIRNCIEGKFGQGKRRFSLGKVMAKLPHTSFSAIAITFLVMNLSNLLRQVFWAFLCLKWKNSTFSRSMIRISYNLKINQQLKLMLVAK
>NZ_CP011304.1|WP_046660896.1|3607003_3608152_-|IS4-family-transposase
MISELYQKVLENELGRARYLLLLMIVGTLQILKQAKLEILAEALPIPILFESRRKKLKRFLKLEILNIEKIWFLCLKEMLKQQQRFTTKGLAYIAIDRTSWGAINILMVSLIYDKRAIPIYWEILDKKGSSNLEEQQRVLEKTLTVLSGHKIVVLGDREFCSVSLGKWLQKQSLYFCLRQKKSTNVKTKEGIYQEMRELGLSPGTQLFLNDVNITKEQGFGQFNLAGKWKKTYGGFQTKEPWYILTNFVDLETAIIAYQKRFDIEEMFRDFKSGGYSLEGSQLAPQYLSKLIIVIAIAYTSATLQGKKIKDMGIQKYVTRPEKRYKGQRRHSSFYVGQHLYHWLQLHQMFQKNIEELMQISRYRLKDYIKGQRAISLALSTF
>NZ_CP011304.1|WP_046661002.1|3599881_3601108_-|ISL3-family-transposase
MPSNPQLKLMTELLHLEGVVVTNYQIITDIGIVLHLENMSRESQCIHCGSKTEKVHQNNELTIRDLPFGEQALYLRINRRQMRCEKCGKKFTEELNYLPKKRTYTDRFRKKIVAEVLNSDLKNTAERNGVSEQEIETMLKDLGEELITAKPQGLKKLGIDEIAMIKGKGNYYAVLVNIDTGKIIGLGEKRTEEALTEYLKHWGEEVLSQIEEVSIDLWIGYKNVAEKLMPQAQIVGDRFHVMKQVNNELDEARKEVKREAAKIKNKKNKENILAGIAKSKYALLKNEGDLVEKERKKLEEIYKVSPKLGEMHKLKEEFREVFEKNTEGNEGLFALSDWLKKAMAYFPKSCQTIRRWIDEITAYFDNRTTQGTVEGINNKLKVIKRRGYGFRNFKNFSLRCLLNWHFAS
>NZ_CP011304.1|WP_103672725.1|3598665_3599558_+|IS630-family-transposase
MRPYSVDFRQKIIDVWKKEKISIRGLAQRFDVAKSFIQKLLKQHKETGDIRPRPQGGSPPTKLNSEQLIILIEIIESNNDATLEELSDLLYEKTQVKVSRATLGRLTQKLNYSFKKKTLHAAEKESDRVQQKRVEYWSQVREIEASKLIFIDESGVNLALLRLYARALIGRRDRGRKPQKRGRNISIISAISLEKVVASVNIYGAVDAVTFEGFILKEVLPKIKEGDCLLMDNAKIHLGEMVREIIEQEKARLIYLPPYSPEFSPIENFWSKVKAILRKLKARTYKDLIEGIELAML
>NZ_CP011304.1|WP_046663047.1|3595915_3598081_+|O-linked-N-acetylglucosamine-transferase
MSWQNEVKTALENNQYDIVSQFYEELIERETTEISHYWYLGLAYLLEDREEDAQATWLLVLSQAAESELSGWIKTLTQILDAEATRQENSQRLETSYLIRLHLQNLNPSFLNNLLHLMELEIQFQIFAMEKCHDWCVFELLENTATAAINLDLLLRVTEKVLIYPCTDTIHFLELAALHINNPEIIATKVISAIVNYAYQQKQSVFAINLVELCLRFLPEDLYLQNSLFNLYKTTTIDYKKSLEIADNFYKSCQTTTEKLLGISLVIAISQAKGDWGNLPKFIDELIQLIERQINAKQFNARPFIIDSILGVTICLPYYQDNPKINRYLQSKLAEIFQADVRTRYNYIAPVSSPKSPARKIKIGYIAYTLRRHSVGWLSRWLFHYHNRDKFEIYTYFVNQAADEITEKWFINNSDYSYNLPAKIEQITAQIRQDNLDILVDLDSLTNNTTCLVIALKPAPIQVTWLGLDASGIPAIDYFIADNYVLPENAEEIYSEKIIRLPNSYLSVDGFEVGVPTRRRTDLNIPDDAIIYLTVQSGLKRTLNMIYLQLQILQQVPNSYLLIKGFADKETIRELFLKSADELGISQDRLRFLPNDFNEETHRANLGIADIVLDTYPYSGATTTLETLWMGIPLVTRVGEQFAARNSYTFMKNAGISQGIAWSDEEYVQWGIKLGLDKNLREEVRWKLRKSRHTSPLWNSKQFTRNLETAYQQMWNIYCQS
>NZ_CP011304.1|WP_046663046.1|3593744_3595898_+|O-linked-N-acetylglucosamine-transferase
MSWHSQVEPAIIQGDFWQVSQFYEELIEREPLEISHYWYLGLAYLLEAREEEAQTTWLFVLSQGDEQEMNSWTVDLVNILDGEARRQVEVKNWQLSWVIRQHIYQINPDNLENLLYLVLLEIKLEYFYPQKLKDWQIVDLINSDKLENFDINLLLHTIYKLLDWPAQEVLDIIITLLKIDSQQSAILEIIEQHIEKIYYTDKTNAVILTLSCLDIIPDHLVLLHKIHQYYIDTGNFELALETANKIKNLSNDKAAKLYGIYLLLYTEILAGNWLNIDNKTQEYYQAIQNNLERGQCPMSNQAEVISITSPLAYLKDDLVGNRWLTNQLAKLFQEAVRKRFNQVTIESQKPKDVNKKLNIGYIAHTLRRHSVGFLSRWLIHYHQRDNFNIHLYLVNQVEDDITEQWFKNKVDKYNNLPANPQIIAEKINQDNIDILVDLDSITKDNTCRVMALKPAPIQITWLGLDATGIPAIDYFLVDNLVLEKNAQEFYQEKLWRLPNCYLAVDGFEIGIPTLTRQDLNIPADAITYLTLQVGLKRNPATIRLQMQIIKAVPNSYLLIKGAGSEKLINDLFISIAKEEGIDENRLRFLSGVANEEIHRANLQIADVVLDTYPYSGATTTLETLWMGIPVVTKVGQQWSSRNSYTFMTHGGISEGIAWSDEEYVQWGIKLGKDEQLRRKVIAKLDESRQTSPIWNARQFTKDVENAYRQMWQIYCES
>NZ_CP011304.1|WP_080949780.1|3592922_3593405_+|cytochrome-c
MSYIILHLPISSSGGGILGQKVAKCKEKLIFPSAACVNSQLVKPKFGLYRFLMVIIVVLFLISTFLITFHLAKMSDPYIKEVLSRQGNVSRGYEIFQINCAACHGQFADGIVGPSLEDVSRRKSRISLIEQVISGKTPPMPKFQPDTQAMADLLVYLENL
>NZ_CP011304.1|WP_046663045.1|3591832_3592894_-|mechanosensitive-ion-channel-family-protein
MNLLTRLEDWPYIILPITIVLSFLLLGWLVEQRVVSQLLSIAREKNLRFSEGVLRSLRGLSILWFGLLGLNIALSLPNLPLFPSLILLSQKFLLVAFLASATWAIAQLSVEILRVYTTGDDGISSLTSLFEFLAKVLIFSCGFLLILSSVGISITPLLTAFGIGGVSLGLALQNTLANLMSGINIITSKKVRPGDYIELRTGEAGYVRDVDLRCTVVEEITNNLLVIPNAQIISSSFRNYSLPDHSLLVPVEVGISYDSDLEKVEKITREVIQEITQLLQPNLGDYQPLIRYGKFDYYSILLTVYLKVVEEEFFQHLTIKHEFIKLLHRRYQQEGIKIPYPIFFPYPPTNPPS
>NZ_CP011304.1|WP_046663044.1|3591107_3591788_+|germination-protein
MPSSRSSDKISLPWIIGIGLALFTAGGATAWFAVHHLSSSQKTSENPIESPSPVPISKSPIVEPVSPGPVKTSPTATPAAIPVRETRQVYWLKVTDTGNQLVSQKITVQKADSRDRELTAVLKILLAGPSNSKDMTTIPPGTKLLDLKVDKTGIKINLSREFGNDDGPDMLIGRLAQIIYTTTAEDPNAKVWIQVEGKPLELLGEGHGLEVAQPMTRKFFEENYQL
>NZ_CP011304.1|WP_046663043.1|3590019_3590835_+|DUF2993-domain-containing-protein
MEWLTITLASVLTLLTPAGAIIDRVLADILRSQVQKVEQLAVRVDNTPNYQALQGKIDRVRISARGIYPLADVRIEKIELETEPISLDLRRLQQKNGNLAASLRRPAAGALHLVLTETNVNQALQSAAVKGPIQTLINNLIPSREEFGITKYQFSQANFNFLNNNRVALRLQLETQRLDEPAASLDLSLEVGFKLVQGRKIELIDPTATLNGRRLSSRLLKGFAEGISTQLDLKNFEKQGIIARLLQLQIDDDKLSIAAFGRIEPRSGNPN
>NZ_CP011304.1|WP_046663050.1|3612814_3613087_-|CRISPR-associated-endonuclease-Cas2
MYFVISYDISDDKRRTKIHNTLKSYGQRVQYSVFECDLTDTQYAKLRGRLSKLIKPDTDSIRFYFLCACCRGKVERIGGELPRDNTIFFV
>NZ_CP011304.1|WP_046663051.1|3613099_3614104_-|type-I-D-CRISPR-associated-endonuclease-Cas1
MGTVYVTREDAFLGKNDERLTVKASKETILDVPLLNVDGVVLFGRGSLSPALVIELLERHIPLSFVTSTGRYLGRLEPEMTKNIFVRRAQWQAAGDSPKAIHLVRGFVRGKLKNYRNILLRRQRDRKELDLQTAIACLEAAIGSIETTSAIDSLRGLEGAGSAAYFSCFDSLILGDTFTFASRNRRPPRDPVNSLLSLGYALLRHDVQSAINLVGFDPYLGYLHYQRYGRPSLALDLMEEFRAIVVDAVVLNGVNHPYLTPEHFTTEPLSGAVSLTREGLQIFLRLYEQKKQSKFKHPVMSKQCTYQEAFEIQARLMAKYLMDETDKYPPLILK
>NZ_CP011304.1|WP_046663052.1|3614109_3614703_-|CRISPR-associated-protein-Cas4
MDESDYIPIAALNHYAYCPHRCWRMFVAGEFLNNSYTIEGTNLHERVHTVGAGNREEIWQIRAIWLKSDNYRLIGKADLIESHDGEFIPVEYKRGSKGEWDNDELQVCAQAICLEEMTGKRLDTGYIYYASSHQRQPVAIDLALRQRAIATIRAVETLIQTGKMPPAVYSPRCKGCSLFDRCLPRLTEKVQRYQEED
>NZ_CP011304.1|WP_046663053.1|3614705_3615539_-|CRISPR-associated-endoribonuclease-Cas6
MPYSLVLNLTPRSPIYPNFLTGRHLHALFLTLVSSVDQELGNILHASDADKAFTLSPLQMQSRRKTINFPRWRHEREIAPETPCWWRISLLDDRLFGKLTPLWLNLNPKQPWHLGSADLVITSVLATPQSVQPWANSCTYQYLYENASETNREFDFLFATPVTFRQGKFDSALPTRELVFNSLLSRWNRYSGISFDSIALESIFPSFFDIQTKLTDEAYKNQSIGCVGEIHYRLLGEVEPAKIKAINALADFALYAGVGRKTTMGMGMTRRISKDKR
>NZ_CP011304.1|WP_046663054.1|3615538_3616105_-|Uma2-family-endonuclease
MTLISSKSLTLPEFLSLTPPDGDITYELVDGEAIPKMSPKFFHSRLTGALFLLLDRWNQGRGEVGIEWAIVLSKNDRDWCPVPDLLYISPERLGDITLTDEACPVPPELVIEIISPEQSFSSLSEKAVDYLKAGVSRVWIVDPQAKQITIFYPDAPPAIKKGDDEMSDILLPDLTLTPGQIFAKARLS
>NZ_CP011304.1|WP_046663055.1|3616145_3618881_-|CRISPR-associated-helicase-Cas3'
MSKSNPQPFFKFGRVFFPGEPTIAPDKILFQPLGNHVGNVRQLARKWQDGNFSLERVIEGINLHDKAKPQTFKIRVETNKQGEFTKYTYSFKGHRFKVDNPQNLWVQALARGHHDYSTKEIIKDTYQLKKDTEYQKIFSKDPLQYAKELYILEMCDQIEAELACRVIGDDEQAKSRTFMDFTITKGTSEDSNHRVFYLDPYPFKEPTITLNFRSWTYNLSDEDKNQLQQLHENRKDKELGSKLNTLVKEWWKKNEHTISEDRAITAIIKPDNSNTYSPSEKSENAIFWWYEELANFQPNPMQEEVFQTMVKNQHPAFILKAPTGAGKFEAIIIPFLAMLSTKEDRPRLIIPLPARSLLEDQKQRCDKYLKQFSLLHKGREVSLVIDTGTEMNRYVYLDGEVKSSNNSRRHLYKGDIILTTIDKFIYRYFGYGDKQKSFIFPYRIYHGNTLICFDEAHTYDDISFTNFCSLVKALYEAGCSLVLMTATLSQNHLERFDYLADNMIDYIDVQDNLEKLNNFYQQILKQDYSNLKQFEFYEEPTNLQQKLTSIALEEWNSNPSHRIIVSVETVKDAIAIYEKIKQTLNIKFSEKKEFLFLYHGRLSDIPKTSHYSRTNLYQRLKERDENDQAYILVTTSAIEVGCDLNSTRLITQLCNPESLIQRAGRCNRKGNVEDAKIIVIGNNIPEFVNTLSEAELENYKTILKGLHDQNFDPKAIMNCVSTKQTIDDYRVVELFSLLQDYVYNADLTCQSAHEKGLVITRSWTPSVTLVYDDGKQGDSLEKIVKESPQIQVSIDRLILKKNNEGNYTNQYANVSVYEWIYDKEETRYKLEPLKYWGCAYSKELVIKVCAVQEGAISDSFEPYSYDHELGFKDLPGVFIKWRSNGYQERLQYNPTKDRSVVINYTSALTQD
>NZ_CP011304.1|WP_046663056.1|3618873_3619698_-|hypothetical-protein
MYCLTFKIIPTAAMTFRILPGSILNIATYPFVPPTTFSGFLRRIVMLSEGLDIPETSINKENPPYFTLPRQYIALGAYPVLDKWSGVHRTHRKGTRSFNHDVFSRLYIDGDRENFQLHTWEYFIAEELIGYVVSESKSSLEAFSNLQGVGCKIGKEGFAVIDEVSESIRLQRKILSAHPSTVVPMEALIQRNPCINRCDIYNLYRHEWSADQTQDEDKGLFDTERSPINGFIPFVAAYYPEKAHPLPTLDFYTDGNLQIPVALVELLQRESINV
>NZ_CP011304.1|WP_012266052.1|3619701_3620595_-|hypothetical-protein
MATESKVTTGLPKTDANKPRLHFDIYAILEGSQELYLGHEVQVNVNLVEIVKLSTKDGKEIEKCYISPTKRRGVERRCLLWSPVKSGELLGDKQNCGIPKTCAEPTCPICATFGALDPGKRTLIGRVTHGGGVAIQEIYPVEKQRAMHPALLVNRNDETPTPFRREYNQPGILYPVYNHALSITDQDFSAVAYAFLDSLPRIGSGNPKGIAIAETDDRTPLLVLDRYLSPRGKRPIVSPSETDPQKAINDFLYLALYPETNFTNHIQEAHFDRWIGNEALAKLQEYSAIFVDTVLQA
>NZ_CP011304.1|WP_046663057.1|3620597_3623129_-|hypothetical-protein
MSIKQLSLFENVSPEQDTKAVTTSEEISELEITILLSALTANAIAQTDSTLISALADDPRAIAIAKTFDCPKLVRQLRLSQPQKESEFIKPTFQGNQVFYREREIGEIQLVYKSPSPGELQAKLTHESTIDRFLEFLQKKYQIVSLHESNYHVQIFIPQTQQSHNIEELWIEFITKVIFSIYGDFQYQLSGLMQTFITMLKSVPLAGRGFSTLEIPIITRDQAKVLAAFYLAIFEQVKDRQEKRETEIVQLIEQIKSEELNSKDLESTEKKLKSKQEMQAKEFNKYRDYFQKVLSKLLDEQRAIYHERRNLDEQLGKTGLSKAQVSKLQKQKDKIESQIIFQEDSIEEKQRFLEESDGNPFEFIEKQKQTDLLKPIQAIAKSFNKTATEQINSTRGDIFTQCILEMYRLLENPKLETIPEPLLTINPKILAARTAGDDGKDFCYSCGVTLDAKTVRWRVARFMFERPSQRRQSSSSEDRPFICSSCSVLSFASPLKVTDDSIILRLESQDDRGVTKVKIKDYLRMLTNKEVHLSSGCYIALTSEKTITGDTASKKLGQFQYALAKVASIFPLEVIKDFKFVLQLQRTEKVLVSRQLIFIKGLIEGYDQSIIVSGKDINLKLGDAIRYVQQDSPYLADYTLLKASSISDRLLLERVREQYLQTIIQDIQGETMTIDSLWKRAKLYEDVAALTGLTYAFAQSLESTAKKLMKPEDAEREVSKLIEKVDDPVAFSYYATLGDEKKISVQARLYHNPDNYFIYEQAKKMLENKLEITNREEVDNSGKKWLVFYADDITKSYAYFANPDQVGNYAQEKEWKNLTYNLKLSLYTRFPELVRKLSSKGDK
>NZ_CP011304.1|WP_158524813.1|3623216_3623360_-|hypothetical-protein
MPNVDDIHQQIEIIQDQIELLQCQIKELRQSPVLDSEGEVRIFADLT

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Crispr_ID: NZ_CP011304_25

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011304_25

3885605-3885698

Orphan

Consensus_repeat	Method
CACTGATTACTGTTTACTGTTTACTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011304_25

>merge|NZ_CP011304|25|3885605-3885698|CRISPRCasFinder
TTCAGTTCACTGATTACTGTTTACTGTTTACTGGACGGCTACGCCGTGCCTTTGGCAACACTGAAAAAAGCTTCCCACTGATTACTGTTTACTG

>NZ_CP011304|25|24|3885605-3885698|CRISPRCasFinder
TTCAGTTCACTGATTACTGTTTACTG	TTTACTGGACGGCTACGCCGTGCCTTTGGCAACACTGAAAAA
AGCTTCCCACTGATTACTGTTTACTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011304.1\|WP_002781457.1\|3876083_3876623_-\|cytochrome-b6-f-complex-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|237392
NZ_CP011304.1\|WP_046663242.1\|3895696_3895915_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046663241.1\|3894730_3894955_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NZ_CP011304.1\|WP_046663233.1\|3882292_3883717_-\|ammonium-transporter	unknown	unknown	gnl\|CDD\|223083
NZ_CP011304.1\|WP_046663243.1\|3896159_3898211_-\|M3-family-metallopeptidase	unknown	unknown	gnl\|CDD\|341051
NZ_CP011304.1\|WP_002759624.1\|3868717_3869959_-\|bifunctional-ornithine-acetyltransferase/N-acetylglutamate-synthase	unknown	unknown	gnl\|CDD\|235441
NZ_CP011304.1\|WP_024969066.1\|3870139_3870547_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_002784872.1\|3898899_3899934_-\|cobalamin-biosynthesis-protein-CobW	unknown	unknown	gnl\|CDD\|274151
NZ_CP011304.1\|WP_046663236.1\|3887101_3889075_+\|molecular-chaperone-HtpG	unknown	unknown	gnl\|CDD\|235366
NZ_CP011304.1\|WP_046663235.1\|3885744_3886842_+\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl\|CDD\|273015
NZ_CP011304.1\|WP_046663238.1\|3890947_3891298_+\|4a-hydroxytetrahydrobiopterin-dehydratase	unknown	unknown	gnl\|CDD\|234845
NZ_CP011304.1\|WP_046663230.1\|3873859_3874921_-\|mannose-1-phosphate-guanylyltransferase	unknown	unknown	gnl\|CDD\|223906
NZ_CP011304.1\|WP_046663234.1\|3883892_3885329_-\|ammonium-transporter	unknown	unknown	gnl\|CDD\|223083
NZ_CP011304.1\|WP_046663229.1\|3870559_3872209_-\|AarF/ABC1/UbiB-kinase-family-protein	unknown	unknown	gnl\|CDD\|223733
NZ_CP011304.1\|WP_046663240.1\|3892331_3894224_-\|DNA-ligase	unknown	unknown	gnl\|CDD\|236137
NZ_CP011304.1\|WP_046663232.1\|3878096_3878906_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223377
NZ_CP011304.1\|WP_046663237.1\|3889384_3890887_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223989
NZ_CP011304.1\|WP_046663231.1\|3875053_3876040_-\|apocytochrome-f	unknown	unknown	gnl\|CDD\|179460
NZ_CP011304.1\|WP_046663239.1\|3891294_3892173_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224995
NZ_CP011304.1\|WP_046663855.1\|3877168_3878035_+\|6-carboxytetrahydropterin-synthase	unknown	unknown	gnl\|CDD\|376501

Protein	Function_ID	Function_description	E-value
NZ_CP011304.1\|WP_002781457.1\|3876083_3876623_-\|cytochrome-b6-f-complex-iron-sulfur-subunit	gnl\|CDD\|237392	PRK13474, PRK13474, cytochrome b6-f complex iron-sulfur subunit; Provisional.	4.80363e-130
NZ_CP011304.1\|WP_046663241.1\|3894730_3894955_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	9.30919e-09
NZ_CP011304.1\|WP_046663233.1\|3882292_3883717_-\|ammonium-transporter	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	1.38606e-168
NZ_CP011304.1\|WP_046663243.1\|3896159_3898211_-\|M3-family-metallopeptidase	gnl\|CDD\|341051	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP). Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70). DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from Escherichia coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). OpdA may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala. This family also includes Arabidopsis thaliana organellar oligopeptidase OOP (At5g65620), which plays a role in targeting peptide degradation in mitochondria and chloroplasts; it degrades peptide substrates that are between 8 to 23 amino acid residues, and shows a weak preference for hydrophobic residues (F/L) at the P1 position.	0
NZ_CP011304.1\|WP_002759624.1\|3868717_3869959_-\|bifunctional-ornithine-acetyltransferase/N-acetylglutamate-synthase	gnl\|CDD\|235441	PRK05388, argJ, bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ.	0
NZ_CP011304.1\|WP_046663237.1\|3889384_3890887_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	5.39015e-108
NZ_CP011304.1\|WP_002784872.1\|3898899_3899934_-\|cobalamin-biosynthesis-protein-CobW	gnl\|CDD\|274151	TIGR02475, Probable_cobalamine_biosynthesis_protein, cobalamin biosynthesis protein CobW. The family of proteins identified by this model is generally found proximal to the trimeric cobaltochelatase subunit CobN which is essential for vitamin B12 (cobalamin) biosynthesis. The protein contains an P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. A broader CobW family is delineated by two Pfam models which identify the N- and C-terminal domains (pfam02492 and pfam07683). [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	4.74899e-167
NZ_CP011304.1\|WP_046663236.1\|3887101_3889075_+\|molecular-chaperone-HtpG	gnl\|CDD\|235366	PRK05218, PRK05218, heat shock protein 90; Provisional.	0
NZ_CP011304.1\|WP_046663235.1\|3885744_3886842_+\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl\|CDD\|273015	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD].	2.21195e-143
NZ_CP011304.1\|WP_046663238.1\|3890947_3891298_+\|4a-hydroxytetrahydrobiopterin-dehydratase	gnl\|CDD\|234845	PRK00823, phhB, pterin-4-alpha-carbinolamine dehydratase; Validated.	4.93181e-44
NZ_CP011304.1\|WP_046663230.1\|3873859_3874921_-\|mannose-1-phosphate-guanylyltransferase	gnl\|CDD\|223906	COG0836, {ManC}, Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane].	9.78878e-146
NZ_CP011304.1\|WP_046663234.1\|3883892_3885329_-\|ammonium-transporter	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	1.08376e-152
NZ_CP011304.1\|WP_046663229.1\|3870559_3872209_-\|AarF/ABC1/UbiB-kinase-family-protein	gnl\|CDD\|223733	COG0661, AarF, Predicted unusual protein kinase [General function prediction only].	1.46139e-140
NZ_CP011304.1\|WP_046663240.1\|3892331_3894224_-\|DNA-ligase	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	6.27048e-23
NZ_CP011304.1\|WP_046663232.1\|3878096_3878906_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223377	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only].	1.28316e-67
NZ_CP011304.1\|WP_046663231.1\|3875053_3876040_-\|apocytochrome-f	gnl\|CDD\|179460	PRK02693, PRK02693, apocytochrome f; Reviewed.	0
NZ_CP011304.1\|WP_046663239.1\|3891294_3892173_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	1.98973e-103
NZ_CP011304.1\|WP_046663855.1\|3877168_3878035_+\|6-carboxytetrahydropterin-synthase	gnl\|CDD\|376501	pfam01242, PTPS, 6-pyruvoyl tetrahydropterin synthase. 6-Pyruvoyl tetrahydrobiopterin synthase catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin, the second of three enzymatic steps in the synthesis of tetrahydrobiopterin from GTP. The functional enzyme is a hexamer of identical subunits.	7.49888e-43

>NZ_CP011304.1|WP_046663234.1|3883892_3885329_-|ammonium-transporter
MKRIARKSGELVGLLPKINPVWLACVPLSAIIFVVWNTAVQAQDAKPLTPEDVQNALNTIWVLIASILVIFMNAGFAMLETGFCRQKNAVNVLAKNLIVFALSTISFWAIGFSLMFGSVSNEFFGTGGWFLSSSDPATYVMPASLPTSVFFLFQVAFAGTAATIVSGAVAERIKFVDFLVFSLIIVGIMYPITGHWVWGGGWLADLGFKDFAGSTVVHSVGGWSALTGAAILGPRMGKYINGRTSALPGHNMSIATLGCLILWIGWFGFNPGSTLAVNETVPYIAVTTNLAGAAGGIAATFTAWAKDGKPDLSMIINGILAGLVAVTAGCDGVSYWSALIIGLIAGVVVVYSVAFFDNLKIDDPVGATSVHLVCGVFGTLAVGIFNKDAGLITGQFQLFINQIIGIVAVGAFTVIVSGIVWTILKATLGIRVTPEEEMEGLDIGEHGMEAYSGFVKESDIVAGGHYASSVDMETPSSR
>NZ_CP011304.1|WP_046663233.1|3882292_3883717_-|ammonium-transporter
MKKIVGITILLLGLGFNCGVAPVFAETIAAAPPNPISAGDTAWMLISSALVLLMTPGLAFFYGGLVRSRNVLNTMMMSLVAMGVIGVTWVLWGYSLAFDVTPGKSGFGEGIEAFIGGLDWIFLNGVTAAAPDNIGYAPTVPHQVFMVYQMMFAIITPALISGAIVERVNFKAYFWFLLLWSTFIYSPLAHWVWGKGWLAATGALDFAGGTVVHISSGISALVAAWVIGPRRSFGVQAYAPHNVPFVLLGIGLLWFGWFGFNGGSALSSSSLATTAFVNTSIAASAGGLTWMLIEWILRGKPTAIGIASGFLGGLVGITPAAGYVLPIGAILIGSITALSCFFAVSLRAKLRFDDSLDTYPVHGVGGTIGALLTGLFATKAVNSAGNDGLFFGNPGLLWTQFVGVAATYIFAAVGTFVILKVLGLFMDLRVKPNTEAEGLDVPQHGEEAYGQEFEFGSSLSYQENAAATNPQENY
>NZ_CP011304.1|WP_046663232.1|3878096_3878906_-|SDR-family-NAD(P)-dependent-oxidoreductase
MKLQGKTALVTGASRGIGRAIALELARQGLSRIVIVARDQERLEKLAKEIESLGVIATPLALDLTENDLVSASIIRVWQECLGIDILVNCAGIAHQTPFLRSQFSQVQAEISLNLMAMYTVTRLIARRMAIRGQGTIVNVSSMMGKIAAPSFSTYSATKFAILGFSQALRSELREHNIKVVTLLPSLTDTDMVRELQLFRWLKPMSAEEVAQTLITGLNREKTEIVVGWQSHLALWCQKLAPKLLEKIVDLASPLRQSKGKRGWREVFN
>NZ_CP011304.1|WP_046663855.1|3877168_3878035_+|6-carboxytetrahydropterin-synthase
MDCIINRRARFSASHRYYLPEWDEAENQRLFGLGSRFPGHGHNYELYVSLYKELNLYGMVENLSTVKQVIKQEVTSQLDYSYLNQVWPEFQQTLPTTENIARVIWQRLAPYLPLVKIQLFEHPELWAEYQGKDMEATLTIKTHFSAAHRLALPQLTLEQNSEIYGKCARVNGHGHNYHLEVSVAGEIDPRTGMIVDLGDLQKAIDELVVEPFDHAFLNKDIPYFAEVVPTAENIALYIAQLLEERIRQLGAELDKVKLIESPNNSAEIHCRGSVQAPRQLLEKTLTAV
>NZ_CP011304.1|WP_002781457.1|3876083_3876623_-|cytochrome-b6-f-complex-iron-sulfur-subunit
MSQVSGTDVPDLGRRQFMNLLTFGTITGVAAGALYPIVKYFIPPSAGGTGGGVTAKDALGNDVIVSQFLTSHNAGDRTLAQGLKGDPTYLVVQEDKTLANYGINAVCTHLGCVVPWNASEEKFMCPCHGSQYNAEGKVVRGPAPLSLALAHANVTDNDKVVFSTWTETDFRTGEEPWWS
>NZ_CP011304.1|WP_046663231.1|3875053_3876040_-|apocytochrome-f
MRTFNFLSFPQVHRQALVKAVLVAIATVSLLLTSDVINPQSAQAYPFWAQQTAPETPREATGRIVCANCHLAQKPAEIEIPHSVLPDSVFEAVVKIPYDPASQQVLGDGSKGGLNVGAVLMLPDGFKIAPPDRIPEEMQEKLGGVYFQSYKEGQDNVVIVGPLPGDQYKEIVFPVLAPDPSQNKAIHFGKYAVHLGANRGRGQVYPTGEPSNNNAFKASTAGTISQISKTEAGGYEVTITSEAGPVVENIPAGPELIVSEGQAIEVGQFLTSNPNVGGFGQKETEVVLQNPGRIKGLVLFLGGIMLCQILLVIKKKQVETVQAAEMNF
>NZ_CP011304.1|WP_046663230.1|3873859_3874921_-|mannose-1-phosphate-guanylyltransferase
MNQSLVPVILAGGKGERFWPLSRLARPKQFLCLDGSGRSLLQATADRLLSLGAGWENLWVITASAIADGVREQLPDLPESNLLVEPVGKDTAPAVTWATLEVIKRYGKEVAIGFFPADHYIGNQEAYINTLKAAVEVAVSQKAIVTLGIKPDYPSTGYGYIEQGENQGEFNGLPVYKVSRFTEKPDRTTAENFLETGLFSWNSGMFIFQGQVVLEELKTHANNILQPLIDRGIAAYEDLEKKSIDYALMEKTQLAYVLPANFGWDDLGDWNSLERLLEAKGKNIELANHVGLDTEGSIIYASDEEEVIVTIGLKDLVIVRDGKATLVVHKDRTQDIKQVLKQLQTAPKLEKLL
>NZ_CP011304.1|WP_046663229.1|3870559_3872209_-|AarF/ABC1/UbiB-kinase-family-protein
MFSLPQTSQRQKEILEIVLGNGWDYMRGVLTLGKTENPQIPTPEVLKKILVELGPFYVKLGQLLSTRPDLLPANYIEALTALQAQVPPVAWTDIEIVITEQLAKPIKQVFKYINPQPIAAGSIGQIHRATLLSGEEVAIKVLRPGIEKIVAQDSALIKVIADLVALTEFGQSYDVVNLAEEFIKAVNAELDFTQEGHYTDQLRYNLTQSRWSEPKQLVIPKIYWDLTNSKLLVLEWLEGKQILDADVSRPETEQTISQRKSEITRILFRSFFQQIYIDGFFHADPHPGNIFYLDDGRVALIDCGMVGRLDPQTQQILTELLLAIVDLDAKRCSQLTIKLSESVVPITLVQLEVDYERMLRKYYNLNLNQINFSQVVYELLQIARRNRIKLPGNLGLFAKSLANLEGTARKFNPDINILEEVKPLLTNILEQQLIGSTPLQTALRTVLDLKSFSLKYPRQIEVLLDGLTSETLNVNLKIRDLDNLRRSLDNSANRLAFSVIIGSLIIGAAIVTASAQSRQLTIISTVLFATASLIGLWLVVGILRSGRLR
>NZ_CP011304.1|WP_024969066.1|3870139_3870547_+|hypothetical-protein
MERGLLWTPLLILFIWLAWSGWNEYQKVEIYRQWAENFDRAKYDIYSVLGQKDKIITWGKPTRKGVINLQTFSLEEVKEIRLLVNNQVVDLDALPPQGSPFLEFIFKERSPEKIPFTEVELASRWAKFLQQQILI
>NZ_CP011304.1|WP_002759624.1|3868717_3869959_-|bifunctional-ornithine-acetyltransferase/N-acetylglutamate-synthase
MADWQEIEGGITAPKGFKSAGMAAGLKPSGLPDLALIVSETEAIAAGVFTTSQVRAACVDYCRQRLQTKASARAILCNAGQANAATGEAGWQDALDSAAALSQVLGIPADAILLASTGVIGQRIRMDALTAALPTLAGLLSENGGESTARAIMTTDLVPKSIALQTTIDGRPVTIGGIAKGSGMIHPNMATMLSFITCDAAVSTVLWQNMLSRAANKSFNQITVDGDTSTNDSLIALANGQSRTTAITEMGRDAQKLEAMLTEVCQYLAKAIARDGEGATCLIEVRVSGAADDQSARQIARTIAGSSLVKSAVFGRDPNWGRIAAAAGRAGVVFHQEDLQIKLGDFVMMENGQPLAFDRASASNYLKAAASGAYLREDTVLMSICIGNGSGTGTAWGCDLSYDYVKINAEYTT
>NZ_CP011304.1|WP_046663235.1|3885744_3886842_+|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MAQATEFDRTMMQRCLTLARQALGRTSPNPLVGSVIVQEGTIIGEGFHPGAGQPHAEVFALRQAAEKARGATLYVNLEPCNHYGRTPPCSEAIVQAGIKKVVVGMIDPNPLVAGKGIQRLASAGIETLVGVEESECHQLNQGFIHRITAKKPFGILKYAMTLDGKIAATSGHSTWITSPASRQIVHQLRSACDAIIVGGSTVRQDNPHLTTHGLSDHNPLRVVMTRSLDLPPSAHLWDTSQFPTLVYTQIDSNVKLKQQLLTKGVEVIELTEVTPTLVMENLYQRGFCQVLWECGGGLSAAAIAEGMVQKIIAFIAPKIIGGIQAPTAVGDLGFQLMSQALQLENVTVNYLNPDILIEGYLPSEK
>NZ_CP011304.1|WP_046663236.1|3887101_3889075_+|molecular-chaperone-HtpG
MTVLEKGNITIHTENIFPIIKKSLYTDHEIFLRELISNSVDAISKLKMASLAGEARAEVPEPEINLAIDKENRTLSITDNGIGMTGEEIKKYINQVAFSSAEEFINKYQKSANDLIGHFGLGFYSAFMVAKKVEIDTLSYQEGATPVHWCCDGSPEFELTDSSRSQIGTTITLTLMDEEGEYLEPARIRQLVKTYSDFMPVPIKIDGEVINQQRALWKESPQNLTKEDYLEFYRYLYPFQEEPLLWVHLNTDYPFLLNGILYFPKLRPDVDVSKGQLKLFCNQVFVSDHCEEIIPDFLMPLRGVIDSPDIPLNVSRSALTKDRTVRRIADFIAKKIADRLKSLYNEDAKEYIRCWGDVGTFIKFGSLKEDKFKQQVEDILIYRTTYKPPETQVQLEAQTAEGDAWQEATVKTPLEAIEQEGYTTLKAYLERHKERHENRVFYCTDPHSQSTYVELYKNQGLEILFFDSFIDTNYFIPFLEREYSDVKFTRVDSELDSTLLEQDQASEIIDPASNKTRAELIKEIFAKALDNSRINIKTEALKSDDPQATPPAIVLLPEAMRRLQEMTAMMQQKAMAFPEEHILMINTNHPLIQQIIQISQGSIVTGSGESPSAQLAKMLCQHVYDLALIAQKGFDAEGMQAFVERSNRVLTKLTEKI
>NZ_CP011304.1|WP_046663237.1|3889384_3890887_+|DEAD/DEAH-box-helicase
MRLPTLKYERGTLILHPPPKGKKWLDFATWDDRIERFRILAIHYRPLVETLQEEGINFQDEAKAFNNLELIASFEREPYPHQTEALIAWKKSQRRGVIVLPTAAGKTYLAQLALQSTPRSTLIIVPTIDLMHQWYAQMLAAFPDAEVGLLGGGSKDNSAILIATYQSAAIYSETLGNRYAFLIFDECHHLPSDFFRKIAEDSIAPYRLGLTATPDRGDGSHQDLDYLIGTIVYQKSPQDLSGKALADHEIIQIKVKLSAKEQEKYQEAIKIRNDFLRKNNLSLSGLDGWQNFVMISARSSEGRRAMLAHRESKEISSGTQGKLRVLAELICEHHPEPILIFTNDNATVYRISESFLIPAITHQTPVKERHEILTRFRQGEYKILVTSHVLNEGVDVPEAGIAIILSGTGSTREYIQRLGRVLRKGQQEDKRAILYEVIAENTTEEKTSQRRRGEQKNKTSYKTANRQLELLPSPPKKSFSFPKAAESSTPWVSSPESEEE
>NZ_CP011304.1|WP_046663238.1|3890947_3891298_+|4a-hydroxytetrahydrobiopterin-dehydratase
MTELAQQKCQPCQSGSSPITAEEITALQAKIPDWNLLEYEGIPRLQKLYKFANFQGAIAFTNAVGEAAEKEGHHPALLTEWGKVTVSWWTHDVGGLHQNDFIMAARTDDIYRQQKA
>NZ_CP011304.1|WP_046663239.1|3891294_3892173_-|NAD(P)-dependent-oxidoreductase
MSQKIAFLGLGVMGAPMTTNLVRRGFAVNAWNRTPEAPGITIAGSSGANICSSIAAAVRDAEIVFTCVGDVPDVEAVILGPGGVMESAVVGTLVVDMSTIGSQAARMIGKKLEENNLRFLDAPVSGGDIGAKNGTLTIMVGGKEADFQTCLPCFQAMGKTIRWCGEIGNGQAVKLCNQVLGAVHMVALCEALKMAKIQGLDPNLVIEVCKTGAAGSWALENLGPKILAQDLQPAFMIEHILKDLRLVKETAQTAGEILPGTDLAETLFKVVAELDEGKGIKQGTQAMIRAYD
>NZ_CP011304.1|WP_046663240.1|3892331_3894224_-|DNA-ligase
MLNELIYEGLGLSAVFGGLFLWSRSGLVSKNTALLVAQAQLQQSNSDLLAQVKGLDVAQSDLKDENQQLHAKIIYIEQHSAQLQHKATDLENSLQSLQQAVQIGEGEIEHLKTTAKEIEAEKAGLMEQLEREKAQITSLEAQIQTLEQQKGEINRQFDLTKKQTTSLYSQIQTLEQDKALLQQELEKAEELRAKVADLEHKNRELSDLAAQIPSLQGQIQTLEQNLAHQTEQYERGQQEIASLQGQISGLEREKKSLSEDLAASQTRSLSLGQECDNLTIKLQETVAQVTAITAEKDSLGAHLEAAKLELQALAAQKGELSAELTTAAEKIADLEGQLQELTQLPQQLADSQAKIAHLEGQLQELTQLPQQLADSQAKIAHLEGQLQELTQLPQQLETYRENISNLEIQLHQLSAEKDQLETTTSRHIEELSQQNRQLTQDLEVQKTAAKALEKEKIKFEGELATKQEEIAALEVKIQNLQQERDDFSRQTAPINTNEPEAIISETPVVEEPETPPVIAKETPVVAAEKIPVADTSLEVQPAAEIVQTSQESAENPLKGKSVVILGTFSKISREKAKSLIINVGGTVTGSPSANTDYILLGKAPGEKLKKAQKLGIKTISEAQFLQMVES
>NZ_CP011304.1|WP_046663241.1|3894730_3894955_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MQLKLTKIFQKVPKGYIGFVEELPGANTQGETLEESRSNLEEAIELVLEANRMLAEEQLQGQEVIRESVTFWAA
>NZ_CP011304.1|WP_046663242.1|3895696_3895915_-|hypothetical-protein
MSIAFFQDLIESVESLSIEDQDYLFELIRKRRIEKRRYEMAKNGEETLKSLAMGTAKKGSAEEIMAYLLDDE
>NZ_CP011304.1|WP_046663243.1|3896159_3898211_-|M3-family-metallopeptidase
MTNTSNPLLAGQGLPAFDQIQPGLIVPGMTQLLQELARELTDLEAQIAPTWEKLVEPLTRIEERLSWSWGIIGHLMGVKNSPELRQAYETVQPQVVEFISRLSQSKPIYEAFLSLRQGESWGQLDEAQQRIVEASLRDAQLAGVGLVGEKKDRFNAIQLELAEITTKFSNNILDATKAFQLKLTTPEDIAGLPPSLLSLAAQTARTQGETNASSETGPWVITLDFPSYFPFMKYSDNRELREKLYKAYVSRADLGELDNNPLIDRILQLRQEQAHLLGYSTYAEVSLARKMANSVDEIEKLLDNLRQVSYEAAKQDLEALKTFAGTDDLKHWDIAYWSEKQRQAKFNFSAEELRPYFPLPRVLEGIFSLAKRIFAVEIIAADGQSPIWHPDVRYFQINDEKGEKIAYFYLDAYSRPAEKRGGAWMDVCIGRAKTGTEVRLPVAYLICNQTPPVDGNPSLMTFEEVTTLFHEFGHGLQHMLTTVDYSGAAGINNVEWDAVELPSQFMENWCYDRPTLMSMAKHYETGETLPEHYYQKLLLAKNYMSGSAMLRQLHLSLVDLELHHRYQPNGSETPKQVRQRLAATTTIIPPLPEDAFLCSFGHIFAGGYAAGYYSYKWAEVLSADAFAAFEEVGLDNEEAVKSIGRRFRDTVLAMGGSSHPMNVFKAFRGREPSTEPLLRHSGL
>NZ_CP011304.1|WP_002784872.1|3898899_3899934_-|cobalamin-biosynthesis-protein-CobW
MHKIPVTVITGFLGAGKTTLIRHLLQNNQGRRVAVMVNEFGEVGIDGDLLKSCQTCDDNPNDNIVELTNGCLCCTVQEEFLPTMQKLLERRQQLDCMLIETSGLALPKPLVQAFRWPEIRNGATVDGVITVVDGFAVARGRLVADLDALTAQRQADPNLEHETPIEELFEDQLACADLVLLTKTDLISEIELEKIINWLKTQLRSTVKIVTCADGQISPDVLLGFNAAVEDDLASRPSHHDHEEEHDHDEDINSVQFCLDSPVDARILTQRIKELVAREEIYRVKGFVNVAHKPMRMVLQGVGDRFDSFFDRPWQSTEMRQTRLVFIGRSLDSQRIEQALTRVC

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Crispr_ID: NZ_CP011304_26

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011304_26

4227228-4227340

TypeV-U4

Consensus_repeat	Method
AATTTGCGTTATTTCAGCTTCTATTTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011304_26

>merge|NZ_CP011304|26|4227228-4227340|CRISPRCasFinder
AATTTGCGTTATTTCAGCTTCTATTTTCCAGTCAGTGCCTCTCCTGATATGTAGCCTATACTCAACGGATTTAGTATGATTGACGAATTTGCGTTATTTCAGCCTCTATTTTC

>NZ_CP011304|26|25|4227228-4227340|CRISPRCasFinder
AATTTGCGTTATTTCAGCTTCTATTTTC	CAGTCAGTGCCTCTCCTGATATGTAGCCTATACTCAACGGATTTAGTATGATTGACG
AATTTGCGTTATTTCAGCCTCTATTTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011304.1\|WP_046663493.1\|4219823_4220933_-\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176260
NZ_CP011304.1\|WP_046663500.1\|4231441_4233118_-\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase-RibB/GTP-cyclohydrolase-II-RibA	unknown	unknown	gnl\|CDD\|236465
NZ_CP011304.1\|WP_002736362.1\|4233255_4234134_-\|photosystem-I-reaction-center-subunit-XII	unknown	unknown	gnl\|CDD\|366093
NZ_CP011304.1\|WP_046663488.1\|4214311_4215484_+\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|130253
NZ_CP011304.1\|WP_046663491.1\|4218923_4219358_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046663492.1\|4219354_4219768_-\|SnoaL-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|378915
NZ_CP011304.1\|WP_046663487.1\|4213020_4214304_+\|ABC-exporter-membrane-fusion-protein	unknown	unknown	gnl\|CDD\|213754
NZ_CP011304.1\|WP_046663497.1\|4227679_4228279_+\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|99751
NZ_CP011304.1\|WP_046663499.1\|4230631_4231375_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226983
NZ_CP011304.1\|WP_046663496.1\|4223545_4227109_+\|methionine-synthase	unknown	unknown	gnl\|CDD\|273959
NZ_CP011304.1\|WP_046663490.1\|4216578_4218501_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
NZ_CP011304.1\|WP_046663502.1\|4236089_4237313_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349941
NZ_CP011304.1\|WP_002771747.1\|4234957_4235476_-\|phycocyanin-subunit-beta	unknown	unknown	gnl\|CDD\|271301
NZ_CP011304.1\|WP_046663498.1\|4228281_4229283_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046663503.1\|4237391_4238279_+\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|239783
NZ_CP011304.1\|WP_002749933.1\|4229515_4230574_+\|D-alanine--D-alanine-ligase	unknown	unknown	gnl\|CDD\|234993
NZ_CP011304.1\|WP_046663489.1\|4215502_4216222_+\|DevA-family-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274374
NZ_CP011304.1\|WP_046663495.1\|4222276_4223407_+\|SpoIID/LytB-domain-containing-protein	unknown	unknown	gnl\|CDD\|274252
NZ_CP011304.1\|WP_046663494.1\|4221400_4222033_+\|restriction-endonuclease-subunit-R	unknown	unknown	gnl\|CDD\|335717
NZ_CP011304.1\|WP_046663501.1\|4234402_4234891_-\|phycocyanin-subunit-alpha	unknown	unknown	gnl\|CDD\|271303

Protein	Function_ID	Function_description	E-value
NZ_CP011304.1\|WP_046663493.1\|4219823_4220933_-\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	gnl\|CDD\|176260	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding.	0
NZ_CP011304.1\|WP_046663500.1\|4231441_4233118_-\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase-RibB/GTP-cyclohydrolase-II-RibA	gnl\|CDD\|236465	PRK09319, PRK09319, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase RibB/GTP cyclohydrolase II RibA.	0
NZ_CP011304.1\|WP_002736362.1\|4233255_4234134_-\|photosystem-I-reaction-center-subunit-XII	gnl\|CDD\|366093	pfam00427, PBS_linker_poly, Phycobilisome Linker polypeptide.	1.70275e-76
NZ_CP011304.1\|WP_046663488.1\|4214311_4215484_+\|FtsX-like-permease-family-protein	gnl\|CDD\|130253	TIGR01185, membrane_spanning_subunit, DevC protein. This model describes a predicted membrane subunit, DevC, of an ABC transporter known so far from two species of cyanobacteria. Some experimental data from mutational analysis suggest that this protein along with DevA and DevB encoded in the same operon may be involved in the transport/export of glycolipids. [Transport and binding proteins, Other].	2.68668e-154
NZ_CP011304.1\|WP_046663492.1\|4219354_4219768_-\|SnoaL-like-domain-containing-protein	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	3.37184e-05
NZ_CP011304.1\|WP_046663487.1\|4213020_4214304_+\|ABC-exporter-membrane-fusion-protein	gnl\|CDD\|213754	TIGR02971, devB-like_secretion_protein, ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.	1.57221e-84
NZ_CP011304.1\|WP_046663497.1\|4227679_4228279_+\|DnaJ-domain-containing-protein	gnl\|CDD\|99751	cd06257, DnaJ, DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.	6.57244e-07
NZ_CP011304.1\|WP_046663499.1\|4230631_4231375_-\|hypothetical-protein	gnl\|CDD\|226983	COG4636, Uma2, Endonuclease, Uma2 family (restriction endonuclease fold) [General function prediction only].	1.66919e-17
NZ_CP011304.1\|WP_046663496.1\|4223545_4227109_+\|methionine-synthase	gnl\|CDD\|273959	TIGR02082, Methionine_synthase, 5-methyltetrahydrofolate--homocysteine methyltransferase. This family represents 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), one of at least three different enzymes able to convert homocysteine to methionine by transferring a methyl group on to the sulfur atom. It is also called the vitamin B12(or cobalamine)-dependent methionine synthase. Other methionine synthases include 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase. [Amino acid biosynthesis, Aspartate family].	0
NZ_CP011304.1\|WP_046663490.1\|4216578_4218501_-\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP011304.1\|WP_002771747.1\|4234957_4235476_-\|phycocyanin-subunit-beta	gnl\|CDD\|271301	cd14768, PC_PEC_beta, Beta subunits of phycoerythrin and phycoerythrocyanin; phycobilisome rod components. phycobilisomes (PBSs) are the main light-harvesting complex in cyanobacteria and red algae. In general, they consist of a central core and surrounding rods and function to harvest and channel light energy toward the photosynthetic reaction centers within the membrane. They are comprised of phycobiliproteins/chromophorylated proteins (PBPs) maintained together by linker polypeptides. PBPs have different numbers of chromophores, and the basic monomer component (alpha/beta heterodimers) can further oligomerize to ring-shaped trimers (heterohexamers) and hexamers (heterododecamers). Stacked PBP hexamers form both the core and the rods of the PBS; the core is mainly made up by allophycocyanin (APC) while the rods can be composed of the PBPs phycoerythrin (PE), phycocyanin (PC) and phycoerythrocyanin (PEC).	1.82966e-105
NZ_CP011304.1\|WP_046663502.1\|4236089_4237313_+\|amidohydrolase	gnl\|CDD\|349941	cd08021, M20_Acy1_YhaA-like, M20 Peptidase aminoacylase 1 subfamily, includes Bacillus subtilis YhaA and Staphylococcus aureus amidohydrolase, SACOL0085. Peptidase M20 family, uncharacterized subfamily of bacterial proteins predicted as putative amidohydrolases or hippurate hydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). This family includes Staphylococcus aureus amidohydrolase, SACOL0085, which contains two manganese ions in the active site, and forms a homotetramer with variations in interdomain orientation which possibly plays a role in the regulation of catalytic activity.	0
NZ_CP011304.1\|WP_046663503.1\|4237391_4238279_+\|acetylglutamate-kinase	gnl\|CDD\|239783	cd04250, AAK_NAGK-C, AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino Acid Kinase Superfamily (AAK).	2.94129e-167
NZ_CP011304.1\|WP_002749933.1\|4229515_4230574_+\|D-alanine--D-alanine-ligase	gnl\|CDD\|234993	PRK01966, ddl, D-alanine--D-alanine ligase.	0
NZ_CP011304.1\|WP_046663489.1\|4215502_4216222_+\|DevA-family-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274374	TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.	7.83254e-145
NZ_CP011304.1\|WP_046663495.1\|4222276_4223407_+\|SpoIID/LytB-domain-containing-protein	gnl\|CDD\|274252	TIGR02669, stage_II_sporulation_protein_D, SpoIID/LytB domain. This model describes a domain found typically in two or three proteins per genome in Cyanobacteria and Firmicutes, and sporadically in other genomes. One member is SpoIID of Bacillus subtilis. Another in B. subtilis is the C-terminal half of LytB, encoded immediately upstream of an amidase, the autolysin LytC, to which its N-terminus is homologous. Gene neighborhoods are not well conserved for members of this family, as many, such as SpoIID, are monocistronic. One early modelling-based study suggests a DNA-binding role for SpoIID, but the function of this domain is unknown. [Unknown function, General].	2.05198e-39
NZ_CP011304.1\|WP_046663494.1\|4221400_4222033_+\|restriction-endonuclease-subunit-R	gnl\|CDD\|335717	pfam04313, HSDR_N, Type I restriction enzyme R protein N-terminus (HSDR_N). This family consists of a number of N terminal regions found in type I restriction enzyme R (HSDR) proteins. Restriction and modification (R/M) systems are found in a wide variety of prokaryotes and are thought to protect the host bacterium from the uptake of foreign DNA. Type I restriction and modification systems are encoded by three genes: hsdR, hsdM, and hsdS. The three polypeptides, HsdR, HsdM, and HsdS, often assemble to give an enzyme (R2M2S1) that modifies hemimethylated DNA and restricts unmethylated DNA.	0.00822149
NZ_CP011304.1\|WP_046663501.1\|4234402_4234891_-\|phycocyanin-subunit-alpha	gnl\|CDD\|271303	cd14770, PC-PEC_alpha, Alpha subunits of phycoerythrin and phycoerythrocyanin; phycobilisome rod components. phycobilisomes (PBSs) are the main light-harvesting complex in cyanobacteria and red algae. In general, they consist of a central core and surrounding rods and function to harvest and channel light energy toward the photosynthetic reaction centers within the membrane. They are comprised of phycobiliproteins/chromophorylated proteins (PBPs) maintained together by linker polypeptides. PBPs have different numbers of chromophores, and the basic monomer component (alpha/beta heterodimers) can further oligomerize to ring-shaped trimers (heterohexamers) and hexamers (heterododecamers). Stacked PBP hexamers form both the core and the rods of the PBS; the core is mainly made up by allophycocyanin (APC) while the rods can be composed of the PBPs phycoerythrin (PE), phycocyanin (PC) and phycoerythrocyanin (PEC).	1.68834e-107

>NZ_CP011304.1|WP_046663496.1|4223545_4227109_+|methionine-synthase
MNSPFLDYLNGPKHPVLVFDGAMGTSLQSQNLTAEDFGGAEYEGCNEYLVHTKPSAVAKVHEAFLAVGADVIETDTFGGTSIVLAEYDLADQAYYLNKTAAELAKACANKYSTPEKPRFVAGSMGPGTKLPTLGHIDFDTLKNAYVEQVEGLYDGGADLLLVETCQDVLQIKAALNAIEEVFQKKGQRLPLMVSVTMETMGTMLVGTEINAVVSILQPYKIDILGLNCATGPDLMKPHIKYLSENSPFIVSCIPNAGLPENVGGQAHYRLTPVELKMALMHFIEDLGVQIIGGCCGTRPDHIQALAELSQGLTPKSRHYHYEPSAASIYSTQPYIQDNSFLIVGEKLNASGSKKCRELLNVEDWDSLVSMAKAQVKEGAHILDVNVDYVGRDGVRDMHQLASRLVNNVTLPLMLDSTEWEKMEAGLKVAGGKCILNSTNYEDGESRFYQVLDLAKKYGAGVVIGTIDEEGMGRTAEKKFQIAKRAYYAAIEYGINPYEIFFDPLALPISTGIEEDRENGKATIEAMRRIRQELPECHILLGVSNISFGLNPAARQVLNSVFLHEAMQVGMDGAIVSANKILPLAKIEPEYQQVCRDLIYDNRRFDGDICVYDPLTKLTELFAGKTTKKDPSSNANLPVEERLKQHIIDGERLGLEEALKQALQDYPPLDIINIFLLDGMKVVGELFGSGQMQLPFVLQSAQTMKAAVAFLEPFMEKKEGDNNAKGTFIIATVKGDVHDIGKNLVDIILTNNGYRVINLGIKQPVENIIEAYKEHKADCIAMSGLLVKSTAFMKENLEVFNEKGITVPVILGGAALTPKFVHDDCQKTYKGQVIYGKDAFSDLHFMDKLMPAKAGGQWDDSKGFLAEFAEAEKTPVVAEELEVNPDTIFTDGTLDKELVIDTRRSEAVEVDIPRPTPPFWGTKILTAAEIPIEEVFWYLDLQALFVGQWQFRKPKSQSKQEYDQFLQEKVHPILTAWKEKIVKENLLNPTLIYGYFPCQSSGNSLLIYDPESIQAGEKPENLQPIAIFEFPRQKSGRRLCIADFFAPQESGIIDVFPMQAVTVGEIATEYAKSLFDANEYTEYLYYHGMAVQTAEAMAEWTHTRIRRELGFAEFDPDNIRDILQQRYQGSRYSFGYPACPNIQDQYKQLALLGCDRIGMYMDESEQLYPEQSTTAIITYHPTAKYFST
>NZ_CP011304.1|WP_046663495.1|4222276_4223407_+|SpoIID/LytB-domain-containing-protein
MIKLDKKIKDGVIKVKFAASTYFSLLRHCAVPLLSIATFTPILLTYLAKEKPETPQPQANLETAASPAPIIPSPIAPLTAPSPKLSPSPQSSPLAPKKLAPSVQTSPNTSPNTAPAAAVKPVTRQPLLVPANYTPPVLEIRVAIKRDVASVLIGVNGPAVITDRQGRGLKTIATNEGLPVIPDAKGLKMGDLSLPEVIFVQPTSADGLVYVDDSWYRGKVLLVAQGDRLLVVNHVNLEAYLYSVVGSEMHSTAPMHALKAQAIAARSYALVHIIRPANAWFHLGNTQRWQVYKGIRSEYQSTHQAVNATAGQILSYKGGVVESLYAATDEIVAWAHGGRGMSQTGAYKLAEKGLDYQQILGNYYPGVGLARLVLQN
>NZ_CP011304.1|WP_046663494.1|4221400_4222033_+|restriction-endonuclease-subunit-R
MVQILQAKEVTLRDLINHFQLEFVEDEHFFGEWQQDLKAISEQEKELLDKIKTGYFNLLNYPPFLETSVRMTVLDLLLFIGNFYLFPFQIKAEESVEIITEEQDLIIKGRLDTLILKEQLWVMIIESKRVIYSVEVGLPQLLAYLIVNPHPNRPNYGMLTNGSEFLFVKLLWDGKPLYGTSRLFAMRNPGDLYEVLKILKHLCQSSEGVE
>NZ_CP011304.1|WP_046663493.1|4219823_4220933_-|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase
MDVRAAVALEAGKPLTIETVQLAAPQAGEVLVEIKATGVCHTDAYTLSGSDPEGLFPSILGHEGAGIVVEVGKGVTSLKVGDHVIPLYIPECRQCEYCLSFKTNLCQAIRLTQGRGVMPDGTSRFSLDGQPLYHYMGTSTFSNYTVLPEISLAKIRPDAPFEKVCYIGCGVTTGIGAVINTAKVEPGAKVVVFGLGGIGLNVIQGARLVGADMIVGVDINPQKQALATKFGMTHFVNPQEIEGDLVAYLVDLTKGGADYSFECIGNVQIMRQALECCHKGWGVATIIGVAGAGQEISTRPFQLVTGRVWKGTAFGGARGRTDVPKIVDWYMEGKINIDDLITHVLPLARINEAFDLMRQGDSIRSVITF
>NZ_CP011304.1|WP_046663492.1|4219354_4219768_-|SnoaL-like-domain-containing-protein
MSAPVSCPQISIAGITEPIIYRYFQRLNAGEFAETARLFAEDGILIAPFEEGVRGRQAIANYLREEAPGLTAFPSQGSLETLDDQSTRITITGQVQTPLFKVNVRWQFQLTNSGEIAAVEVKLLASPRELINLRQFA
>NZ_CP011304.1|WP_046663491.1|4218923_4219358_+|hypothetical-protein
MLEAFVLSPRYSLDAANWLEGIDPSRHYWLWVNGDPQLPVIIPGLIVSSIEELRTVIGQFRSLQPGESLKLTRIVGSCKIHCVSSNCYAIEARVDSALVWHLFDRETMESLLMAAHPDWLPGEKDLELGRKALMRSLNQPVYVP
>NZ_CP011304.1|WP_046663490.1|4216578_4218501_-|penicillin-binding-protein-2
MRNSGLLSKTKVKLKRKKTLTAPTRPAPNKLQNKIKDKERLVGRQRQSWLIMGLISIVLLGGVGSRLAYLQLQQGQINRERAENNRIRIIPKPPVRGNLFDRNGKVLATARLTHAAYIWPKSQRNPAQKLNLDRLASILAIPRSDLEKRINEADENPSTLIRIARGLTPSQIIALEEYKDELTGIEVDVESVRYYPNGKIGAHILGYTGELTPEEYQAKRRQGYRLGDVVGKMGVEAAYESKLRGEWGGMQLEVNGSGQVIQILGQKIAKPGQDVTLTLDLKLQKAAEAALGKRKGAIVAIDPRDGSVRAMVSYPSFDPNVFSAPITTATWKKLQAEGNPFVNRALQGFPPASTFKVVTATAGMESGKFPPNTVLNTFAALYVGGTAFGEWNRAGFGPMGFVRAMAMSSNTFHGQIGRGVGGPALIAMARRYGFGQKTGIELAEETPGLIADRDWKLRNFKNWDWSVGDTINMSIGQGFTLATPLQVAVMFAVPANGGFLVKPHLLQDARDVKEWRKSLNMKPSTLDTLRKSLRAVVAEGTGRALSDPALPPVAGKSGTAEAPPGKSHAWFGAFAPFDVAQGKPFDVAQGKPFDKPEIVVVAFAEHSGGGGGKVAAPMVRQVMEAYFNVKPKEEKPQPKP
>NZ_CP011304.1|WP_046663489.1|4215502_4216222_+|DevA-family-ABC-transporter-ATP-binding-protein
MPIFQKERELVDFSPNEPVIAIKGLNHYFGTGELKKQVLYDIDLEIKAGEVVIMTGPSGSGKTTLLSLMGGLRSAQAGSLKILGQEMLGISKGKMLKIRRQIGYIFQAHNLLKFLTAKQNVRMSLELHEEFLEQDLDQKATAILESVGLGDRVDYYPHDLSGGQKQRVAIARALVSHPKLVLADEPTAALDKQSGRDVVEIMQKLAKEQGCTILLVTHDNRILDIADRIVNMEDGRLGD
>NZ_CP011304.1|WP_046663488.1|4214311_4215484_+|FtsX-like-permease-family-protein
MKLTHLFKKTPLSWLQVTREKTRLIVAIAGIAFADFLIFTQLGFRDALFDASVKPHYVLDADLVLINPQFDTLFAVKSFSRDRLYQAQRVEGIQSLASVYIASAQWRNPETALERTTLVFGFDPSQRVFTLPEVNQKSSDLKMLNRVLYDQAGRPEFGPIADLLQKNPDLTVQLNKKEVQVAGIFTLGASFAADSNVISSDSTFLRLFPERQPHEIDIGLVKLQAGANIEAVKVNLQALFPKNEVIVLTLKEFAEREKTYWANGTAIGFIFGLGTVVGFIVGIVIVYQILYSDVTDHLPEYATLKAMGYGDWYLVGVLMQEALLLAVLGYIPGFIVSLGVYNLASSATLLPIVMTTARAIEVLILTVIMCIASGIVAMGKLRTADPADIF
>NZ_CP011304.1|WP_046663487.1|4213020_4214304_+|ABC-exporter-membrane-fusion-protein
MKGKTFVKPNQKLMIGLIVLGTGLLGITTFYSLSQFASKPETKTPVIASPVPQKITALGRIEPRTEIISISAPMLLDSDRVMQLLVDEGDSVKTGQIIAILESQERLEDNLRQAQEQVKVAAAKLEQVKAGAKVGEIDANAANVRKIEAQWVGDQANQRTTIQRLTAQLEGDIAAQKATIGKLEAEYRNAKAEFDRYEKLYQEGAISASSFDSKRLNLETSNQQLTEAKVTLERIESTGKQEIQEAKTTLVRIESTGQQQLKEARSTLNQVSEVRGVDVQAAQAEVNAALVAVKKAQTELNQAYIRSPITGKVIKVNTRIGEQISDQGIVDLAETERMEVIAEIYQSDIGKIRSGQTATITGSAFKGEVSGKVRLIALKVDQQNIFSNQPGENFDRKVISVRIALDRKNSEKVAGLTNSQVTVTINE
>NZ_CP011304.1|WP_046663497.1|4227679_4228279_+|DnaJ-domain-containing-protein
MTTNPLNSLILEQISHICEQYSIESRILEDFADFVIKNHRKKSPKPSLTKSKTTATTTVKKVKPLTLTQLKQAVYAYFEVNNTTELKKSSMFQMATRAFDNINLSQRESWEVIYRKYIGILPEEDYEQGKDCINGINIFKYFRPYRVFDLDPNTASKEDIKNAYYRLSKIYHPDNQETGNSHIFDRLTVMYKSITTEIK
>NZ_CP011304.1|WP_046663498.1|4228281_4229283_+|hypothetical-protein
MPQKANTFLIRDTELAQWFSITLEKLEKIVDIFDADPNDDWDLVEGVDYQFVNKKDKVRVFSFEGALKIASYIEKNEKRGIIYRFREFFTKHDQKIRRSLARKLIFAELTDSGEIQVYKGRPMIHKQSLRRILKTNGTKLNKTVNHLQQRTDKPLELGVDFYEDEKREFWFSESGIVMISKSMSETLTNKSRQEMCKMIAMEFPLAFKEIQENLDDDTKQKIEIEKAKKRAKTRDKNTCQVTGQKPDRNNKFNLAVHHLYSAQKYPHLATLDLNLVTIKEEIHQEFHGNLGGFHQPCTIEDFIEFLHVYYPEHHGNLALKLQKTKKKLEKLAK
>NZ_CP011304.1|WP_002749933.1|4229515_4230574_+|D-alanine--D-alanine-ligase
MDKIKVGLLFGGRSGEHEVSINSARSILQAFNYPENLDKYAVIPFYIDKNGCWHSAATARQILTSGQPLAIESDIKVNIWQFPPEVSEIEVWFPILHGPNGEDGTLQGLLTLMRVAFVGSGVLGSCLGMDKIAMKTAFAAAGLPQVKYKAITRSQVWSNACVFPQLCDQIAEEIGYPCFIKPANLGSSVGISKARNRQELEAALDSAASYDRRIIVEAGVTAREIECAVLGNDNPQASLVGEITFDSDFYDYETKYTDGRSSMVIPANIPDKIANQVREMAVEAFKAVDAAGLSRVDFFYVEKTGEVFLNEINTLPGFTNFSMYPQLWKATGLEFDKLVDKLVQLALERQEK
>NZ_CP011304.1|WP_046663499.1|4230631_4231375_-|hypothetical-protein
MTTLDILPEVTCPPTDLWSDEPPLESDLHLQQITILIGCLERLWQERSNYYASGNLTIYYNEEQLKKRDFCGPDFFVVLDTEKHPRKSWVVWGEGGKYPNVIVEILSDSTANIDRNKKKNLYQNTFRTPNYFWFDPESLELQGFRLIAGQYQAIAANENGYLWSEQLELYLGIFDRKLRYFTVDGQLVPTPQEAELEQRQAKEQIFLEKEQERKAKEQAILEKEQAILEKEKLAQKLRELGIDPETI
>NZ_CP011304.1|WP_046663500.1|4231441_4233118_-|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase-RibB/GTP-cyclohydrolase-II-RibA
MPVTVTSIAFDSIDTALAEIKAGRAIVVVDDENRENEGDLICAAQFATPDLINFMAVQARGLICLAMTGERLDALELPLMVTKNTDSNQTAFTVSIDAAPHLGVKTGISAEDRAKTVQVAINPVTRPDDLTRPGHVFPIRAKAGGVLKRAGHTEAAVDLARLAGLYPAGVICEIQNPDGSMARLPQLFEYARQHNLKLISIADLISYRLKYDRFVHRETVCNFPSQFGTFQLYAYRNLLDQTEHIAIVKGDPALFGDQPVMVRMHSECLTGDALGSLRCDCRQQLQAALKMIENNGLGVVVYLRQEGRGIGLINKLKAYSLQDMGLDTVEANERLGFPADLRDYGMGAQMLNDLGVRNIRLITNNPRKIAGLKGYGLQIVERVPLLIEANDYNSNYLATKAEKLGHLFLQTYLVTIALSWGENPPSISQRYHQLEKLRELSRANQLSLQEETRPVANALFDRAPLIVHLGLDIRQGVSSNWYKNPSHPYLLVIDKILNDIKDWSEIERLEFLISDGDDSMTGLQMKLDRQKMSNEDLSQLPQLATQIIYSFTRDSTKN
>NZ_CP011304.1|WP_002736362.1|4233255_4234134_-|photosystem-I-reaction-center-subunit-XII
MAITTSASRLGTTAFSEVAPVELRPDWSRDDAQAVIRAVYRQVLGNDYIMRSERLTSAESLLCNGSITVREFVRAVAKSELYKNKFFYGNFQTRVIELNIKHLLGRAPYDESEVVYHLDLYENKGFEADIDSYIDSAEYTENFGDSIVPYYRGFASQPGQKTVGFTRMFQLYRGYANSDRSQIAGKTSRLAVELAQNGASAVVGPSGGSDGWAYRPSAQRNTPSKALGGSVAYGDVGKLYRVEIAAISKPGYPRVRRSSKAIIVPFEQLNNTLQQINRLGGKVASITPASLN
>NZ_CP011304.1|WP_046663501.1|4234402_4234891_-|phycocyanin-subunit-alpha
MKTPLTEAVAAADSQGRFLSSTEIQVAFGRFRQASASLSAAKALTEKASQLTQGAAQAVYNKYPYTTQMQGANFAADQRGKDKCARDIGYYLRMVTYCLVAGGTGPMDEYLIAGIDEINRTFDLSPSWYIEALKYIKANHGLSGDPAVEANSYIDYAINALS
>NZ_CP011304.1|WP_002771747.1|4234957_4235476_-|phycocyanin-subunit-beta
MFDAFTRVVSQADARGEYLSSSQLDALSAMVADSNKRMDSVNRITSNASTIVANAARSLFAEQPQLITPGGNAYTSRRMAACLRDMEIILRYVTYATFSGDGSVLDDRCLNGLRETYVALGVPGASVAAGVSKMKEAALSIANDRNGVTPGDCSALMSEIASYFDRAAAAVA
>NZ_CP011304.1|WP_046663502.1|4236089_4237313_+|amidohydrolase
MISSTPVPNSLNGAQIRLAIRCLQPQLVHWRRQIHQKPELGFQEHLTASLISQTLTKYGIDHQTGIAGTGIVATIEGSQPGPVLALRADMDALPIAEENQVPYRSQHPGQMHACGHDGHTAIALGTAVYLAQNRHDVKGKVKIIFQPAEEGPGGAKPMIEAGVLKNPDVEGIIGLHLWNNLPLGTVGVKNGPLMAAVECFDLQIQGRGGHGAIPHQTVDSLLVAAQIVNALQTIVARNLNPLDAAVVTVGKLAAGTARNVIADSANLSGTVRYFNPQLGGYFRQRMQEIIAGICQSQGASYQFDYWQLYPPVINHDQMAELVRSIAAQVVETPAGIVPECQTLGGEDMSFFLQEVPGCYFFLGSANPELGLAYPHHHPRFDFDESVLGMGVEIFVRCVEKFGNSKTF
>NZ_CP011304.1|WP_046663503.1|4237391_4238279_+|acetylglutamate-kinase
MNNNIHENDTQRVKILSEALPYIQEFRGRTVVVKYGGAAMNNSDIKDTVMRDIVFLSCVGVRPVIVHGGGPEINSWLDKLGIEPQFKDGLRVTDADTMDVVEMVLVGRVNKEIVALINQAGGKAVGLCGKDGNLITARPVGKEGIGFVGEVSSVDTSVVESLVNSGYIPVISSVAADETGQAHNINADTVAGEIAAALGAAKLILMTDTAGILENYKDPSTLLPKLDIQQARQLIEKGIVAGGMIPKVGCCVRSLAQGVQAAHIIDGRLPHALLLEIFTDRGIGSMIVASGYTNL

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Crispr_ID: NZ_CP011304_27

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011304_27

4254834-4254976

TypeV

Consensus_repeat	Method
GGTGGGTTACGGCGAATACTCAATTTTTAGTGAGAGTATAACTTATTTTCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011304_27

>merge|NZ_CP011304|27|4254834-4254976|CRISPRCasFinder
GGTGGGTTACGGCGAATACTCAATTTTTAGTGAGAGTATAACTTATTTTCGCCGCACCCACCCTACAGATGATTACCTATGTGCTGATCTGGTGGGTTACGGCGAATACTCAATTTTTAGTCAGAGTATAACTTATTTTCGCC

>NZ_CP011304|27|26|4254834-4254976|CRISPRCasFinder
GGTGGGTTACGGCGAATACTCAATTTTTAGTGAGAGTATAACTTATTTTCGCC	GCACCCACCCTACAGATGATTACCTATGTGCTGATCT
GGTGGGTTACGGCGAATACTCAATTTTTAGTCAGAGTATAACTTATTTTCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011304.1\|WP_080949793.1\|4261145_4262363_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|274425
NZ_CP011304.1\|WP_046663513.1\|4248275_4249724_-\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|214349
NZ_CP011304.1\|WP_046663515.1\|4251267_4252893_-\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NZ_CP011304.1\|WP_002804204.1\|4254107_4254536_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372936
NZ_CP011304.1\|WP_046663520.1\|4263339_4264260_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
NZ_CP011304.1\|WP_046663510.1\|4245341_4246409_-\|phospho-N-acetylmuramoyl-pentapeptide--transferase	unknown	unknown	gnl\|CDD\|234638
NZ_CP011304.1\|WP_002735746.1\|4246454_4246718_-\|DUF3134-domain-containing-protein	unknown	unknown	gnl\|CDD\|371474
NZ_CP011304.1\|WP_046663521.1\|4264525_4265509_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
NZ_CP011304.1\|WP_046663523.1\|4265984_4266527_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
NZ_CP011304.1\|WP_039899812.1\|4257753_4259004_+\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NZ_CP011304.1\|WP_046663519.1\|4262365_4263325_-\|GDP-mannose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224014
NZ_CP011304.1\|WP_046663516.1\|4255106_4257428_-\|DNA-helicase-PcrA	unknown	unknown	gnl\|CDD\|273429
NZ_CP011304.1\|WP_046663522.1\|4265641_4265998_+\|dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|376737
NZ_CP011304.1\|WP_149039042.1\|4250286_4250955_-\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_002760450.1\|4247240_4247564_+\|30S-ribosomal-protein-PSRP-3	unknown	unknown	gnl\|CDD\|235062
NZ_CP011304.1\|WP_046663517.1\|4259549_4260104_-\|phycobiliprotein-lyase	unknown	unknown	gnl\|CDD\|312763
NZ_CP011304.1\|WP_046663512.1\|4247784_4248201_-\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|214351
NZ_CP011304.1\|WP_046663511.1\|4246714_4247137_-\|8-oxo-dGTP-diphosphatase-MutT	unknown	unknown	gnl\|CDD\|239517
NZ_CP011304.1\|WP_002737272.1\|4252939_4253251_-\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NZ_CP011304.1\|WP_046663518.1\|4260131_4261115_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030

Protein	Function_ID	Function_description	E-value
NZ_CP011304.1\|WP_080949793.1\|4261145_4262363_-\|glycosyltransferase	gnl\|CDD\|274425	TIGR03087, stp1, sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.	4.45686e-57
NZ_CP011304.1\|WP_046663513.1\|4248275_4249724_-\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|214349	CHL00060, atpB, ATP synthase CF1 beta subunit.	0
NZ_CP011304.1\|WP_046663515.1\|4251267_4252893_-\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_CP011304.1\|WP_046663512.1\|4247784_4248201_-\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|214351	CHL00063, atpE, ATP synthase CF1 epsilon subunit.	1.26357e-60
NZ_CP011304.1\|WP_046663520.1\|4263339_4264260_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	3.98326e-31
NZ_CP011304.1\|WP_046663510.1\|4245341_4246409_-\|phospho-N-acetylmuramoyl-pentapeptide--transferase	gnl\|CDD\|234638	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional.	6.25369e-130
NZ_CP011304.1\|WP_002735746.1\|4246454_4246718_-\|DUF3134-domain-containing-protein	gnl\|CDD\|371474	pfam11332, DUF3134, Protein of unknown function (DUF3134). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	4.66368e-24
NZ_CP011304.1\|WP_046663521.1\|4264525_4265509_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	9.92131e-34
NZ_CP011304.1\|WP_046663523.1\|4265984_4266527_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	3.88413e-45
NZ_CP011304.1\|WP_039899812.1\|4257753_4259004_+\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_CP011304.1\|WP_046663519.1\|4262365_4263325_-\|GDP-mannose-4,6-dehydratase	gnl\|CDD\|224014	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane].	5.86429e-162
NZ_CP011304.1\|WP_046663516.1\|4255106_4257428_-\|DNA-helicase-PcrA	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP011304.1\|WP_046663522.1\|4265641_4265998_+\|dihydroneopterin-aldolase	gnl\|CDD\|376737	pfam02152, FolB, Dihydroneopterin aldolase. This enzyme EC:4.1.2.25 catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate.	6.10559e-38
NZ_CP011304.1\|WP_046663518.1\|4260131_4261115_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	2.47115e-95
NZ_CP011304.1\|WP_002760450.1\|4247240_4247564_+\|30S-ribosomal-protein-PSRP-3	gnl\|CDD\|235062	PRK02724, PRK02724, 30S ribosomal protein PSRP-3.	3.91121e-66
NZ_CP011304.1\|WP_046663517.1\|4259549_4260104_-\|phycobiliprotein-lyase	gnl\|CDD\|312763	pfam09367, CpeS, CpeS-like protein. This family, that includes CpeS proteins, is functionally uncharacterized.	6.46145e-53
NZ_CP011304.1\|WP_002804204.1\|4254107_4254536_-\|hypothetical-protein	gnl\|CDD\|372936	pfam14159, CAAD, CAAD domains of cyanobacterial aminoacyl-tRNA synthetase. This domain is present in aminoacyl-tRNA synthetases (aaRSs), enzymes that couple tRNAs to their cognate amino acids. aaRSs from cyanobacteria containing the CAAD (for cyanobacterial aminoacyl-tRNA synthetases appended domain) protein domains are localized in the thylakoid membrane. The domain bears two putative transmembrane helices and is present in glutamyl-, isoleucyl-, leucyl-, and valyl-tRNA synthetases, the latter of which has probably recruited the domain more than once during evolution.	1.43466e-40
NZ_CP011304.1\|WP_046663511.1\|4246714_4247137_-\|8-oxo-dGTP-diphosphatase-MutT	gnl\|CDD\|239517	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.	6.94662e-56
NZ_CP011304.1\|WP_002737272.1\|4252939_4253251_-\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	3.78596e-48

>NZ_CP011304.1|WP_002804204.1|4254107_4254536_-|hypothetical-protein
MESMQPTETKNPIRTDLPGSLSKPSSSTEQIWSEYVEPVWDSVMSYLANVPDYIGSFFSGYKKPLIVLGAILASFVTVKVTLAVLDAIDDIPLLAPILQLVGIVYTGWFVWRYLLKDENRRELLAEIDALKAQVFGSHNNTL
>NZ_CP011304.1|WP_002737272.1|4252939_4253251_-|co-chaperone-GroES
MAAVSINVTTVKPLGDRVFVKVSPSEEKTAGGIFLPDAAKEKPQIGEVVAVGPGKRNDDGSRTPVEVGVGDKVLYSKYAGTDIKLGGEEFVLLSEKDILAAVS
>NZ_CP011304.1|WP_046663515.1|4251267_4252893_-|chaperonin-GroEL
MAKSIIYNEDARRALEKGMDLLAEAVAVTLGPKGRNVVLEKKFGAPQIVNDGITIAKEIELEDHIENTGVALIRQAASKTNDVAGDGTTTATVLAHAIVKEGLRNVAAGANPISLKKGIDKAADFLVSQIAKHSKPVEDSKAIAQVGAISAGNDDEVGQMIASAMDKVGKEGVISLEEGKSMTTELEITEGMRFDKGYISPYFVTDTERMECVFEDPAILITDKKIGLVQDLVPILEQVARQGKPLVIIAEDIEKEALATLVVNRLRGVLNVTAVKAPGFGDRRKAMLEDIAVLTGGQVISEDAGLKLETTKIDSLGTARRITMNKDTTTIVAEGNDVAVKTRCEQIRRQIEETDSSYDKEKLQERLAKLAGGVAVIKVGAATETEMKDRKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPQLETWAKETLHHEELTGALIVSRAIAAPLKRIAENAGQNGAVIAERVKEKPFNVGYNAATGEFSDMFEAGIVDPAKVTRSALQNAASIAGMVLTTECIVVDKPEKEKSAPPAGGGDFDY
>NZ_CP011304.1|WP_149039042.1|4250286_4250955_-|PEP-CTERM-sorting-domain-containing-protein
MKTSSMSLVLAGISSSLVLMGGVNPVRAAVLIGNLPQTNDNNSNSISTSNVKALAFTLPAGNNYSLDNAILRLGGYATGETPLVQIRNDVGGSNPGSTVLASFTNPTPQGAGNFNYTFTPTSPLTFTAGTKYWLYVASTSGGFDWNASSPSKTPTGIATSSGTQFSNNSGTSFFPGGSFNSFQINATEITGPVASTPEPSVIAALSLFGLGLLGVKGRRNEG
>NZ_CP011304.1|WP_046663513.1|4248275_4249724_-|F0F1-ATP-synthase-subunit-beta
MVATTETNVGKIVQIIGPVIDAEFPSGNLPRIYNALTVKGTNSAGQNLSVTCEVQQLLGDNQVRAVAMSTTDGLVRGMDIVDTGAAISVPVGKCTLGRIFNVLGEPVDEKGPVNVTETSPIHRPAPKLVDLEVTPTVFETGIKVIDLLTPYRQGGKIGLFGGAGVGKTVIMMELINNIAIQHGGVSVFGGVGERTREGNDLYNEMIESKVINADNPEESKIALVYGQMNEPPGARMRVGLSALTMAEYFRDVNKQDVLLFVDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGDLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDGTTVLSRGLASKGIYPAVDPLGSTSTMLQADIVGDEHYGTARAVQSTLQRYKELQDIIAILGLDELSEEDRLTVDRARKIERFLSQPFFVAEVFTGSPGKYVTLADTIKGFQMILKGELDSLPEQAFYMVGSIDEAIAKGEKLKKG
>NZ_CP011304.1|WP_046663512.1|4247784_4248201_-|F0F1-ATP-synthase-subunit-epsilon
MSITVRVITPDRIVWDNVAEEVILPSSTGQLGILSGHAPLLTALNIGVMRIRPGKDWENIAVLGGFAEVENNEIKVLVNGAELGSKIDKEKARAEYEKAQTRLDEVSKGDDRRKTIQAQQSWRKARARYQAAGGLVSV
>NZ_CP011304.1|WP_002760450.1|4247240_4247564_+|30S-ribosomal-protein-PSRP-3
MTVSSESKFILKVLWLDQNVAIAVDQVVGKGTSPLTAYFFWPRNDAWQQLQEELEAKHWIDESDRVDVLNKATEVINFWQELRNQGRQIPMADAQLKFPEVVFSGSN
>NZ_CP011304.1|WP_046663511.1|4246714_4247137_-|8-oxo-dGTP-diphosphatase-MutT
MIPETDSLASKQIGVAVIRDDRDLILIDRRLAKGLLGGFWEFPGGKIEGNETVQECIKREILEEIGIEIAVDSHLITIDHTYSHFRVNLQVYNCRYLSGEARAIECEEIRWVTIEELDHFTFPAANQEIIRALKDMVNSK
>NZ_CP011304.1|WP_002735746.1|4246454_4246718_-|DUF3134-domain-containing-protein
MIAVNRRVIMLNPSIRQEPRYEPAAVIPLKKDASIVEWLEKNNRMIPRDKIAEPDLTLEEDVELSELMDVDDIGYDDDEDELVLDED
>NZ_CP011304.1|WP_046663510.1|4245341_4246409_-|phospho-N-acetylmuramoyl-pentapeptide--transferase
MNANIFSAPIFKKPTGTHLLILLTGLLFLLVVFFQSTNSLLLPLMATTLISAGLGCQVVPMLRRLKMGQIMREDGPQAHLKKAGTPTMGGSFFVPVALIFALIWSKFTPNVVAVALLTFAYMGIGWLDDWQILRYKSNKGLSPQMKLILQITGAVLFCLWMSFNQVSTNIGLWGRLVIPLGFFFWILAGFVLVAESNATNLTDGVDGLAGGTGAIAFLGLGIIIAPSHPDLAIFCTCFAGACLGFIFHNRNPAKVFMGDTGSLALGGALAAVGLITGHLWGLFLISGLFFLESLSVIAQVIYYKATKGPDGKGKRLLKMAPFHHHLELSGWTETKIVGAFYLVNALLVVLAIWTS
>NZ_CP011304.1|WP_046663516.1|4255106_4257428_-|DNA-helicase-PcrA
MTVTADYLEQLNPSQRLAVEHFCGPLLVVAGAGSGKTSALTYRIAHLIRHHGVDPENILAVTFTNKAAREMKTRIEKTFAQQKAQEKYGQRLELLEEYEQKKLFSQVYRNYTKKLWIGTFHSLCGRILRYDINKYQDEYGHSWQRNFSIMDESDAQSLVKNIVTKQMNLDDKKFDARNLRYAISNAKNLGLTPRDYARENPHFRGKVISEVYQAYQMQLAQNNALDFDDLILVPVRLFQQNESILGYWHTQFKHILVDEYQDTNQIQYELIRLLSTNGETKKSEWNWTDRSIFVVGDADQSIYSFRMADFTILLNFQADFGDGLPDDDTRTMVKLQENYRSRENILQAANKLIENNSQRIDKVLVPTREGGESIYVFKARDEQEEASFVIDKIREFTQENPELNWGSFAILYRINAQSRPFEDTLIRNNIPYNIVGGFKFYDRQEIKDAIAYLRVIANPADTVSLLRIINTPRRGIGKTTIDNLLKAAQELGVPLWEIISDETSVNTLAGRATKSINKLAKIIQNLQEKITDLSASEILDKIMEDSGYIDELKQQGTEEADTRIENIQELYSAVVQFQEENEETNLQEFLANASLASDLDNLQEGQEKVSLMTLHSAKGLEFPIVFLVGLEQGIFPHNRSLNDPIALEEERRLCYVGVTRAKEQLFLTYAKERYVWGNKETKVASQFLQELPPELLTSNLKPKKTPKVVPIQTTASNQRKWQVGDRVLHSTFGEGEVTHILGAGKKMNLAVKFSGLGQKIIDPRTAPMQLIHE
>NZ_CP011304.1|WP_039899812.1|4257753_4259004_+|methionine-adenosyltransferase
MSKRYLFTSESVTEGHPDKICDQISDTILDALLSQDDHSRVAAEVVVNTGLVLITGEITSKAQVHFVNLVRSKIAEIGYINADNGFSSNSCTVLVALDEQSPDISQGVTAAQENRELLSNDELDKIGAGDQGIVFGFACNETPEFMPLPISLAHRIARRLAAVRKTGELSYLRPDGKTQVSVIYEDGRPVGIDTILVSTQHDATIGDITDNDLVQQKIKSDLWEAVVQPVFSDLEIKPDANTRYLVNPTGKFVIGGPQGDAGLTGRKIIVDTYGGYSRHGGGAFSGKDPTKVDRSAAYACRYVAKNIVAAGLADKCEIQVGYAIGVARPVSVFVETFGTGKVADDVILDLINKYFELRPAGIIQTFNLRGLPSERGERFYQDVAAYGHFGRNDLDLPWEQTDKAAILKEALTSAVV
>NZ_CP011304.1|WP_046663517.1|4259549_4260104_-|phycobiliprotein-lyase
MNTEIFQQFFAYCVGSWQTERTYHYLADQEVERSRTEFLIQPLTREIKQKVLTDNNYPDIADLESIPGFNLGFYTISEKGEEVRQNLNLLFVVKAENNGYLEGDYLRDRAYEEARPIISAFRFDSTTRELLMTTNYTRSVSVDSITLINPDLRIRKIINYQRPQQGEPLEKVLLVGFGVECKVS
>NZ_CP011304.1|WP_046663518.1|4260131_4261115_-|glycosyltransferase-family-2-protein
MLSNQIPVKISVVVPLYNEEENIDVLFRRLFAVLETINTSYEVVCVNDGSRDNTLKNLVEYHQRYPQIKVVNLSRNFGKDIAMSAGIDYSQGMAVIPIDADLQDPPELIAEMIEKWQQGYDVVYASRRVRIGESWLKRFTAEGFYQVINKLSRVPIPPNTGDFRLIDRRVVESIKKMPERQRFMKGIFAWVGYKQTSILFDREPRYQGQTKWNYWKLWNFAIDGITSFSFLPLKVWTYVGFIIAFISLVYASFLILRTIILGIDVPGYASLMVTVLFLGGIQLLTLGIIGEYIGRVYEEVKGRPLYLVRDCYGFENREQVTDKITQN
>NZ_CP011304.1|WP_080949793.1|4261145_4262363_-|glycosyltransferase
MNILMISSTFPYPPSKGGTQGRTFNLLKYLSKNHDITLIVQRTADVSDEEVEKLGKFVSELVVFPRPRDAKTGIISKLHRLAQFLQTGTPPNVLFGYSQEMQNWIDRAVKSQKFPVITSEHSVNEIYIRPQWKQQIRTVIDVHSSLYQTGKSQLEIGVSSQELRDRLYLPLLRRYEQKTVQKFSKIVVTTDDDQKQMEEFAPNGEIYLIPNAVDLDLFPYRTEDPSGHNLVFIGGLDYWVNIDAACFLAREILPRIQITYPDTTLTLVGANPSLEVQELTKLKGVIVTGRVPSMTTYLHQATVAVIPLRTGFGMKFKTLESMAAGVPVVASDRGLEGLTVEGNNVPLAALRANSIEEYCTAISSLFESAELREKLSRNARKLIEDNYTWQQAATKYEQVLVADIC
>NZ_CP011304.1|WP_046663519.1|4262365_4263325_-|GDP-mannose-4,6-dehydratase
MSKKALICGISGQDGAYLAELLLKAGYTVCGTSRDAQMSSFSNLKRLGIKEQVKLESMALNDFRSVLQVLIKIQPDEVYNLAGQSSVGLSFEQPVETLESIATGTLNLLEAIRFTGAKIKLYNAGSSECFGDIGDNSADENTPFRPRSPYAVAKSAAFWEVANYREAYGIFACSGILFNHESPLRPERFVTQKIIAAVAKIARGSPDTLHLGNMDIQRDWGWAPEYVEAMYLMLQQEQPDDYVIATGESSKLEDFVATAFATVGLNWQDHVISDRSLLRPTDLAISRGNPHKAKEKLGWQARYKMTDIVRMMVENRLEE
>NZ_CP011304.1|WP_046663520.1|4263339_4264260_-|glycosyltransferase-family-2-protein
MAPKIAGIICTYNRDHYLAAAIDSLLAQTCPDCEILVVDNASTDKTRQVVESRLGDGRLKYVYEPILGLSTARNRGAKETRAPILAYLDDDAIASPQWLQILLNAYENNQKLAVAGGKVTLIWPQGYSQPNWLSDQLAGGLGAFDLGDNVVYISQADLTPRGVNYSIRRDFWEKIGGFDPNLGRIGKKLLSNEELYTTELALAQGWQVGYFPAALVEHNVAPERINRQWFMRRSWWQGISEHYREEVAGKTGLAQFGRGGERLVRGLVKSVKFINDPAKSFDNLLYAYGQIGYLSEAAKAMLNPQK
>NZ_CP011304.1|WP_046663521.1|4264525_4265509_+|glycosyltransferase-family-2-protein
MPKVTVCIPTYNRADYLSYSINSVLGQTYEDFELIVCDDGSSDRTPEVVTAFQDSRIIYLRHPQNLGRSLNMRSGFTAARGEYFIKFDDDDGLTPEFLAKTVPILDQEKNVDFVCTDHWIIDKFGQKVTAATQENSAKWGKDRLQKGIIPDLERQTFSYQSLQVGSTLFRYQSLADVDYMRPQADGCEDFDLLVRLALVGKQAYFLPELLMEYRFHGGQTSLKQAVHFLQAKLFCTESYQFNDLKLEEERVKKAAFLQESLGIKLIEKGETEAGRFLIEKASKLSGKSRRARLGLLLSYLPLNLRQLAFQGFRQLRPKDYAEQVRAV
>NZ_CP011304.1|WP_046663522.1|4265641_4265998_+|dihydroneopterin-aldolase
MDTIHVTGIRAYGYTGYLAEEQVLGQWFEVDLSLEVDISIAGKSDAIEDTLDYRQAIEIVKHQIETSKFALVEKLATVIAEDILKLEGVRQVRVQLSKPAAPIPNFTGKITIDITRSR
>NZ_CP011304.1|WP_046663523.1|4265984_4266527_-|NAD(P)H-dependent-oxidoreductase
MIKIVGINGSLRSGSYSAMALEVAISRLGALGVETEIIDLRKLSLPFCNGGDDYSDYPDVAKMQQTVKSAAGLILATPEYHGSVSGVMKNALDLMSFEELSGKVAGLISVLGGQSNSNALNDLRIILRWVHAWVIPEQISLGQAWKVFNEEGKILDEKLSQRFDAFAQSLVDNTRKLNEI

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Crispr_ID: NZ_CP011304_28

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011304_28

4280123-4280204

TypeV

Consensus_repeat	Method
TTCTCAAAGAACAATCTTTAAAAACCGA	CRISPRCasFinder

1 spacers

cas14j,RT

The CRISPR arrays of NZ_CP011304_28

>merge|NZ_CP011304|28|4280123-4280204|CRISPRCasFinder
TTCTCAAAGAACAATCTTTAAAAACCGAGCGACGCTTTCAAGAAACCGAGCGCATTCTCAAAGAACAATCTTTAAAAACCGA

>NZ_CP011304|28|27|4280123-4280204|CRISPRCasFinder
TTCTCAAAGAACAATCTTTAAAAACCGA	GCGACGCTTTCAAGAAACCGAGCGCA
TTCTCAAAGAACAATCTTTAAAAACCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011304.1\|WP_046663525.1\|4269494_4270151_-\|endonuclease-III	unknown	unknown	gnl\|CDD\|223255
NZ_CP011304.1\|WP_080949794.1\|4278675_4279944_-\|precorrin-6y-C5,15-methyltransferase-(decarboxylating)-subunit-CbiE	unknown	unknown	gnl\|CDD\|225151
NZ_CP011304.1\|WP_046660511.1\|4286786_4287776_-\|transposase	unknown	unknown	gnl\|CDD\|372577
NZ_CP011304.1\|WP_046663536.1\|4284595_4285744_+\|DNA-protecting-protein-DprA	unknown	unknown	gnl\|CDD\|223829
NZ_CP011304.1\|WP_046663527.1\|4271391_4271955_+\|phycobilisome-protein	unknown	unknown	gnl\|CDD\|381268
NZ_CP011304.1\|WP_046663530.1\|4277989_4278424_+\|endonuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|238509
NZ_CP011304.1\|WP_046663538.1\|4285810_4286167_-\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
NZ_CP011304.1\|WP_046663534.1\|4282957_4283584_+\|precorrin-8X-methylmutase	unknown	unknown	gnl\|CDD\|181352
NZ_CP011304.1\|WP_046663529.1\|4274380_4274962_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NZ_CP011304.1\|WP_002737239.1\|4273179_4273431_-\|BolA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223349
NZ_CP011304.1\|WP_066030221.1\|4273502_4274150_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046663524.1\|4267635_4268895_-\|transposase	cas14j	-	gnl\|CDD\|223747
NZ_CP011304.1\|WP_046663533.1\|4281532_4282948_+\|precorrin-3B-synthase	unknown	unknown	gnl\|CDD\|236573
NZ_CP011304.1\|WP_046663541.1\|4292314_4292866_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046663526.1\|4270150_4271242_-\|RIP-metalloprotease-RseP	unknown	unknown	gnl\|CDD\|308008
NZ_CP011304.1\|WP_046663542.1\|4292979_4293636_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|236608
NZ_CP011304.1\|WP_052734211.1\|4288507_4290268_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP011304.1\|WP_046663535.1\|4283580_4284285_+\|precorrin-2-C(20)-methyltransferase	unknown	unknown	gnl\|CDD\|180341
NZ_CP011304.1\|WP_002747500.1\|4272134_4272725_+\|fibrillin	unknown	unknown	gnl\|CDD\|309752
NZ_CP011304.1\|WP_046663532.1\|4280712_4281348_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP011304.1\|WP_046663525.1\|4269494_4270151_-\|endonuclease-III	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	8.76857e-105
NZ_CP011304.1\|WP_080949794.1\|4278675_4279944_-\|precorrin-6y-C5,15-methyltransferase-(decarboxylating)-subunit-CbiE	gnl\|CDD\|225151	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].	1.80645e-73
NZ_CP011304.1\|WP_046663536.1\|4284595_4285744_+\|DNA-protecting-protein-DprA	gnl\|CDD\|223829	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion].	2.48968e-117
NZ_CP011304.1\|WP_046663527.1\|4271391_4271955_+\|phycobilisome-protein	gnl\|CDD\|381268	cd12130, Apl, Allophycocyanin-like globins. phycobilisomes (PBSs) are the main light-harvesting complex in cyanobacteria and red algae. In general, they consist of a central core and surrounding rods and function to harvest and channel light energy toward the photosynthetic reaction centers within the membrane. They are comprised of phycobiliproteins/chromophorylated proteins (PBPs) maintained together by linker polypeptides. PBPs have different numbers of chromophores, and the basic monomer component (alpha/beta heterodimers) can further oligomerize to ring-shaped trimers (heterohexamers) and hexamers (heterododecamers). Stacked PBP hexamers form both the core and the rods of the PBS; the core is mainly made up by allophycocyanin (APC) while the rods can be composed of the PBPs phycoerythrin (PE), phycocyanin (PC) and phycoerythrocyanin (PEC). This subfamily contains allophycocyanin-like proteins (Apls), which have conserved the residues critical for chromophore interactions, but may not maintain the proper alpha-beta subunit interactions and tertiary structure of phycobiliproteins. Indeed AplA isolated from Fremyella diplosiphon was not detected in phycobilisomes. As the genes encoding Apls cluster with light-responsive regulatory components, Apls may have photoresponsive regulatory role(s).	1.29098e-83
NZ_CP011304.1\|WP_046663530.1\|4277989_4278424_+\|endonuclease-domain-containing-protein	gnl\|CDD\|238509	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases.	3.54072e-43
NZ_CP011304.1\|WP_046663538.1\|4285810_4286167_-\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	2.79984e-52
NZ_CP011304.1\|WP_046663534.1\|4282957_4283584_+\|precorrin-8X-methylmutase	gnl\|CDD\|181352	PRK08285, cobH, precorrin-8X methylmutase; Reviewed.	3.66558e-128
NZ_CP011304.1\|WP_046663529.1\|4274380_4274962_+\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	4.70848e-34
NZ_CP011304.1\|WP_002737239.1\|4273179_4273431_-\|BolA-family-transcriptional-regulator	gnl\|CDD\|223349	COG0271, BolA, Stress-induced morphogen (activity unknown) [Signal transduction mechanisms].	1.90423e-23
NZ_CP011304.1\|WP_046660511.1\|4286786_4287776_-\|transposase	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.7635e-33
NZ_CP011304.1\|WP_046663524.1\|4267635_4268895_-\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.64945e-28
NZ_CP011304.1\|WP_046663533.1\|4281532_4282948_+\|precorrin-3B-synthase	gnl\|CDD\|236573	PRK09567, nirA, NirA family protein.	7.01329e-108
NZ_CP011304.1\|WP_046663526.1\|4270150_4271242_-\|RIP-metalloprotease-RseP	gnl\|CDD\|308008	pfam02163, Peptidase_M50, Peptidase family M50.	3.93183e-62
NZ_CP011304.1\|WP_046663542.1\|4292979_4293636_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|236608	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional.	1.33194e-83
NZ_CP011304.1\|WP_052734211.1\|4288507_4290268_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	3.59644e-123
NZ_CP011304.1\|WP_002747500.1\|4272134_4272725_+\|fibrillin	gnl\|CDD\|309752	pfam04755, PAP_fibrillin, PAP_fibrillin. This family identifies a conserved region found in a number of plastid lipid-associated proteins (PAPs), and in a number of putative fibrillin proteins.	2.26735e-67
NZ_CP011304.1\|WP_046663535.1\|4283580_4284285_+\|precorrin-2-C(20)-methyltransferase	gnl\|CDD\|180341	PRK05990, PRK05990, precorrin-2 C(20)-methyltransferase; Reviewed.	2.51971e-94

>NZ_CP011304.1|WP_080949794.1|4278675_4279944_-|precorrin-6y-C5,15-methyltransferase-(decarboxylating)-subunit-CbiE
MADNEIVAIFFNMADRNCKSKWLSIIGIGEDGLEGLSSVGRSLLSLASVIVGGERHLAMLPPEDQRQKLLWTSPIQDSVNEIIRRRGQSVCVLASGDPMCYGIGVTLTRQIPLEEMTIIPSPSAFSLACSRLGWSLSEVETLSLCGRPPACLNGVLYPGAKLLVLSADAQTPALAARLLREGGFGESSITVLEHLGGTRERHIQGIANDWQFTDLADLNVIAISCISSHPPTLAPRLPGLPDSAYHHDGQLTKREVRAITLSRLAPLPGQLLWDVGAGCGSIAIEWLRSDRRCQGIAIEHHPTRLQYIADNAAALGTLHLQIVAGIAPSALEDLPQPDAIFIGGGITTPHLLETCWLALRPGGRLVANTVTIESELVLLQWHSKLGGELLRIGIEKAEPVGKFLGWKAMAPVTQWTVLKPRL
>NZ_CP011304.1|WP_046663530.1|4277989_4278424_+|endonuclease-domain-containing-protein
MQLTNHHHLPYNPKLVERAKELRKNMTKAERKLWYEYLKNFQYRVHRQRPIDQFIVDFYCPELKLVIEIDGDIHNREDAQNYDLERTQILSGYGLTVIRFTNQEVLSNFEGVCGVIGSLIPPTPLDKGGFDPSLLRGFDPPNPP
>NZ_CP011304.1|WP_046663529.1|4274380_4274962_+|Uma2-family-endonuclease
MSLSLITRKFTVEEYEKMTTEGIIKPDEKVELIRGEIIKMSPMGTRHAACIARLTQLFYRKFGDLILLGVQNPIRLNNNSQPEPDLSLLIPRSDFYVAAYPCPQDIYLIIEVSDSTLDYDRYTKIPLYAEANIQEVWIVNLKEECLEVYRHPLHGSYQAIQKYYRGEIIFIESFPAIELTLIEILGNKSEIKG
>NZ_CP011304.1|WP_066030221.1|4273502_4274150_-|hypothetical-protein
MLKKIAVPMGNIKSRNFMVKRKQPYSLIYLLTLVIGLVIAIAPDGQAQTPDSNTPASDPNELKPLNQADSVLSLQGGQRLVEEANAAINAAKYSVAVDKLNQARRIFNQLSNYHLQLANSFSGIDPKVFDSQRQSALNTGQMRDEATYKLALVHRAQNQPELAVPLLIQVIQSQNPTSELGQKSYQQLYEMGFVSTPISAPTPTSATPNNSPPRQ
>NZ_CP011304.1|WP_002737239.1|4273179_4273431_-|BolA-family-transcriptional-regulator
MVDFRQVEAMIQEQIPDAQVMIRDLTGGGDHLEAVVISGEFAGKTRVKQHQMVYGALQSALATEAIHALALKTYTPDSWAAEK
>NZ_CP011304.1|WP_002747500.1|4272134_4272725_+|fibrillin
MDAKAKLLELIAGRNRGLLATESDRVRILAAIEQLEDHNPHPHPLEVKQLLGGNWRLLFTSSRDILGLDRLPFFQLGQIYQYLDLNKAKLYNIAEITGVPWLEGAVIVAATFEPTSERRVMVKFERSILGLQRFLNYHSPQEFIDAIESGKKFPPLDFSFNNREQKGWLDITYLDEDLRIGRGSEGSVFILAKEKT
>NZ_CP011304.1|WP_046663527.1|4271391_4271955_+|phycobilisome-protein
MPLSERAQQLIPKARIISFANWPYQQAAIAVWQQADDLNRYLSDSDLDTIVNLEPDLLVSSQQARKLRYNANSIVDNARQALLSQFPTILQPGGDLHPPHRAEACWRDFWNFLRCITYGVAGQQIPYTSAEGLENMRLLYQELQVPLGAMISGLEALKQYSLDYFSDSEKTAIAPYFDHLITVMKKF
>NZ_CP011304.1|WP_046663526.1|4270150_4271242_-|RIP-metalloprotease-RseP
MSVLIAIGVLALLIVVHELGHFAAARWQSIHVNRFSIGFGPALAKYQGKETEYALRAIPLGGYVGFPDDDPDSQIPNNDPDLLRNRPVFDRAIVISAGVIANLIFAYFLLVTQVATVGFPQINYQEGVIIPEVFTAENSVAKQAGMKAGDIVLAINDQPLGASQNAVIDFRDIIQSSPDQPLKLTIKRPTETLDLIVTPELGSDGQGKIGVRLAPNGEETHLKADNFGQAFSLGAGEFQRLILLTIQGFGQLFSNFKENVQQVAGPVKIVEYGAAIARNDAGNLFQFAALISINLAVINILPLPALDGGQLVFLLIEALVGKPLPTKLQDNIMQTGLVLLLGLGVFLIVRDTANLAVFQDLFQ
>NZ_CP011304.1|WP_046663525.1|4269494_4270151_-|endonuclease-III
MAPRKKTQLQLHVLEILSNLKRLYPEATCSLNYQTPVQLLVAVILSAQCTDERVNKVTPALFARFPDAKSLAFAEREELETLIRSTGFYRNKAKNIQGACQKILKDFQGEVPKTMEELLTLPGVARKTANVVLAHAYAIIEGVTVDTHVKRLSNRLGLTTNNDPVKIERDLMALLPQPDWETFSISIIYHGRAVCKARNPACFSCQLASLCPAANSKQ
>NZ_CP011304.1|WP_046663524.1|4267635_4268895_-|transposase
MITLTYQYKLKVNRQQEREIVHILDVGKSVYNYALSERKDWLNSRKCLADRCSLVSEYIIPADEPYPNYFVQAKNLTEAKKVYPILKTVNAQVLQQVLKTLDKAFDRMKSKGFGFPRFKKKMRSFVFPALSKNFLGDEYLNFPQLGKIRIRKSREYPSGFEPKQAQIIRKASGFYVSVSFKSQESVPDITAGKTCLGIDAGIESFVATSQGYLIKAPRFLLKVQSKLKLLQRRLKHQVKGSSNWLKIQEKIARLHEKVSNTRRDWHFKLSHYLCDLADNIFVEDINFVSWSRGIVRKQSLDSGIGSFINEILPFVVWKRGKYYLKVDKNGTSQECPNCGAITGKKALSERVHRCNFCGHIEPRDTASAKVIENRGKNAVGLTVLENARGGDLTGIDRLNQVDLVKSLRTENPPLHRASG
>NZ_CP011304.1|WP_046663532.1|4280712_4281348_+|hypothetical-protein
MTTTADDVWKLLAELVEAQKETERCFQETERRFQETERILKEQSLETERILKEQSLKTDRQITRLSKEIGNLGGKWGRFVENMVAPACETLFLNRQIPVHQVSQRVRKRLDGKTLEIDVLVTNENHVLVVEVKSSLSVDDVKELIKNLTEFRQFFPEYNQKQLYGAVAGIEIEEGADKYAYRQGLFVLAQRGENVAILNDTEFQPKTWYDP
>NZ_CP011304.1|WP_046663533.1|4281532_4282948_+|precorrin-3B-synthase
MNWLVEANACPGLFYGTAAQDGFLIRLRTPGGWLNSPQGKAIATWLEQWQTTIQVTNRANLQIRGLQKSPSLEEFQTLQKLGLAAHNPSIDHLRNIMSSPTAGIDCQESIDTRPLVQELDNFIQNYPSIAQLSPKFSIGIDGGGAVGIGTGSTMAWQHRYNEIQLSAIVLNNPKNLTSILCFRLALGGDKQLYDTDLLIEPENCLAVVKALVTVYIDYVQQNPNIKGKKPRMKHLLKDWGLTKYLEQVNYQLHRTSTGIIQGQEYQQAAHSTQPYFHLGIHPQKQPGLSYIGLSLRLGQLTANQLWGLAALSETFGSGQLRLTPWQTVILPDIPDEKVSELLPKLASLGLSASPGWDAGIVACSGKPGCAAAATATQIHASLLADYLKEHLTCNSPVNIHLTGCAKSCAQPGPAEITLLGTTIEENGQILEAYQVYMGDSQKFLETPIFEGEFTKIPPLIAQILSSQKSKI
>NZ_CP011304.1|WP_046663534.1|4282957_4283584_+|precorrin-8X-methylmutase
MEYIKNGEEIYRKSFAIIRAETNWENLPDDLAHVAVRLIHSCGMTDITEDLEASPDAVKIGRNALAGGAAILCDSQMVANGITKARLPKNNPIICTLNHPEVTELARQINNTRSAAALELWRRHLAGAVVAIGNAPTALFRLLELLDQNVDKPALILGFPVGFVGAAESKIELATNSRGVPFITLHGRRGGSAIAAAAVNALAKENEL
>NZ_CP011304.1|WP_046663535.1|4283580_4284285_+|precorrin-2-C(20)-methyltransferase
MNKLGKLYGLGIGPGDPELLTLKAHRILTTVPVIAYPTLESGKVLARAIVSDFIRPEQIEIPMPLPFSVERSSQPHYDIAAENIAEHLNLGRDVAVLCVGDPMLYGTFMYIFNRLCDRFSIEVVPGISSVMASAAMLGVPITYRNDVFSIMPATLKAEILRDRLAFIDAAAIIKLGRHFAKVRDILEELGLLERALYIERATLPNQQIIPITEVDPEAATYWSLILIPSKTKPQ
>NZ_CP011304.1|WP_046663536.1|4284595_4285744_+|DNA-protecting-protein-DprA
MTDDRVYWLAWSSIAGVGPISLKRLYQHFGSVAVAWNASDSAIAEGAGFGKKLMVAVREGRSQIDPEALFAEHIQKNPLFWTPSDPEYPRFLREIPSPPPLLYYQGKVNLEENQGNIPTVAIVGTRNPTDHGRRWARRLSTLLAQQGFTIVSGMAEGIDGEAHQSCLKAGGRTIAVLGTGVDVVYPSRHRQLHADIQKQGLVISEHPAATQPNKAHFPSRNRIIAGLSRATIVIEAPERSGSLITASYANEFGGDIYALPNSPDIAAARGCLQLIHQGAEIIVSEEKLLEMLGAIPTTNQSAPLNLSPSLPLETSPAVNAAPPVNLEPRLAQVYQLFDRDALLFDIIVQKMQIPTSEVAGILLELELIGLVTQLPGMRYQKT
>NZ_CP011304.1|WP_046663538.1|4285810_4286167_-|thioredoxin
MSEVPAVTDANFKVEVLDSTDLVLVDFWAPWCGPCRMVAPVVAEIAEMFIGKVKVVKLNTDENPNIASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLANTIDKHLKPDDPQKGSKS
>NZ_CP011304.1|WP_046660511.1|4286786_4287776_-|transposase
MKNYTWEYIQKYPKQTKRLLGIDYQQLEQLMALGKLIHRKNQSEIEKTKIRINQPGSGTPPKLSEEEQIVLMLVYLRHHLSFQILGLIFQVSESTAHNIFTYWQKLFEGELPPSLLEQIKKCQEEEIIIEQLRDYELIVDSAEQPVERPTDYQEQKIYYSGKQKRHTLKSQFIVLPKAEDIVDVVIGQPGPTSDIKICRQTLSKFDSQQTFIGDKAYLGENQIRTPDKKPKNGELTENQIKENKVLSSRRIFVEHLIRVVKVFKVVQERFRLNKSRYKSVLLTVCGLVRLRISALILEVIEGEQSGEVIDVIISHSFPSKLDFVSSNPD
>NZ_CP011304.1|WP_052734211.1|4288507_4290268_+|group-II-intron-reverse-transcriptase/maturase
MVLSSNEKVMNTATKPMYEWKDINWRKAERCVFKLSKRIFKASQRGDVKLVHKLQRLLLKSWYAKLIAVRRVSQDNQGKKTAGVDGIKSLTPKQRMALVNNLKPGNKSKPTRRVWIPKPNTDEKRPLGIPTMYERALQALVKLALEPEWEAKFEPNSYGFRPARSAHDAIGAIYISINKKPKYVLDADISKCFDKINHQKLLTKLQTYPKLRQQIKAWLKSGVMDGKNLFPTNEGTPQGGVISPLLANIALHGMEERVKQYAKTLKGNKSKNEQALTLIRYADDFVILHEDLKVIKECQEIIKQWLAEMGLELKPSKTRISHTLETYDDYVGFDFLGFNIRQYQVGKHHGAKSSKGVKLGFKTLIKPSAEKVKSHLKKLGEVVNSQKSSPQDALIKRLNPIIRGWSNYYSSVVSSKTFTDCDYYFFEKLKRWAYRRHPMKNKTWIMRKYWHTEGKDNWVFSTRGGKNPFKLARHLDTKIVRYVKVKGDKSPYDGDLIYWSSRMGKHPEMPPEKAILLKRQQGRCAYCGLYFQDGDILETDHIIPKSKGGKNNRDNKQLLHRHCHDSKTALDKTGTHDKEPLERGAV
>NZ_CP011304.1|WP_046663541.1|4292314_4292866_-|hypothetical-protein
MNNYQPEDVQWIKSLLRHDEGDSNPATEDILFLDEDNEEAHRFDLISAYIDNEVTVEERKLVQHWLDHDAAAKKLYRQLLGLQTNLKQIPVPVAMAGDRLAEQVFRKVDGQRRRQYYVYGGAIFTAMAIAVSSYFISGRNDPLSQMASGPGSISQEGDHLMIALNHPIMEIPTTEQPKENGQR
>NZ_CP011304.1|WP_046663542.1|4292979_4293636_-|sigma-70-family-RNA-polymerase-sigma-factor
MSQSIPASWSLEAKKSQNPLSPDKLSNYDLIARCQEGCQPDRAAFAELLRRYQAHVDKLLYHLAPDWQDRADLAQEVWIRVYRNINRLHEPLKFRGWLSRIATNLFYDELRKRKRVNHPISLDAPRRVEDGEIDWDIESDYPSPDEHLTTHEFYDQLQAAIADLPEAFRTTIILREIEGMAYEEIAEITGVSLGTVKSRIARARAKLQSVLQPYFTEG

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Crispr_ID: NZ_CP011304_29

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011304_29

4285765-4285900

TypeV

Consensus_repeat	Method
TATGGTATTAGCTAAAGTGGTTTTCGGTGCAGCCCCGACCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011304_29

>merge|NZ_CP011304|29|4285765-4285900|CRISPRCasFinder
TATGGTATTAGCTAAAGTGGTTTTCGGTGCAGCCCCGACCACTAGATCAACTTTTTGACCCCTTTTGAGGATCATCAGGTTTCAGGTGTTTATCTATGGTATTAGCTAAAGTGGTTTTCGGTACAGCCCCGACCAC

>NZ_CP011304|29|28|4285765-4285900|CRISPRCasFinder
TATGGTATTAGCTAAAGTGGTTTTCGGTGCAGCCCCGACCAC	TAGATCAACTTTTTGACCCCTTTTGAGGATCATCAGGTTTCAGGTGTTTATC
TATGGTATTAGCTAAAGTGGTTTTCGGTACAGCCCCGACCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011304.1\|WP_080949794.1\|4278675_4279944_-\|precorrin-6y-C5,15-methyltransferase-(decarboxylating)-subunit-CbiE	unknown	unknown	gnl\|CDD\|225151
NZ_CP011304.1\|WP_046663536.1\|4284595_4285744_+\|DNA-protecting-protein-DprA	unknown	unknown	gnl\|CDD\|223829
NZ_CP011304.1\|WP_046663531.1\|4280007_4280655_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046663530.1\|4277989_4278424_+\|endonuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|238509
NZ_CP011304.1\|WP_046663534.1\|4282957_4283584_+\|precorrin-8X-methylmutase	unknown	unknown	gnl\|CDD\|181352
NZ_CP011304.1\|WP_046663529.1\|4274380_4274962_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NZ_CP011304.1\|WP_046660511.1\|4286786_4287776_-\|transposase	unknown	unknown	gnl\|CDD\|372577
NZ_CP011304.1\|WP_066030221.1\|4273502_4274150_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046663533.1\|4281532_4282948_+\|precorrin-3B-synthase	unknown	unknown	gnl\|CDD\|236573
NZ_CP011304.1\|WP_046663542.1\|4292979_4293636_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|236608
NZ_CP011304.1\|WP_052734211.1\|4288507_4290268_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP011304.1\|WP_046663532.1\|4280712_4281348_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046663541.1\|4292314_4292866_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011304.1\|WP_046663535.1\|4283580_4284285_+\|precorrin-2-C(20)-methyltransferase	unknown	unknown	gnl\|CDD\|180341

Protein	Function_ID	Function_description	E-value
NZ_CP011304.1\|WP_052734211.1\|4288507_4290268_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	3.59644e-123
NZ_CP011304.1\|WP_080949794.1\|4278675_4279944_-\|precorrin-6y-C5,15-methyltransferase-(decarboxylating)-subunit-CbiE	gnl\|CDD\|225151	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].	1.80645e-73
NZ_CP011304.1\|WP_046663533.1\|4281532_4282948_+\|precorrin-3B-synthase	gnl\|CDD\|236573	PRK09567, nirA, NirA family protein.	7.01329e-108
NZ_CP011304.1\|WP_046663536.1\|4284595_4285744_+\|DNA-protecting-protein-DprA	gnl\|CDD\|223829	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion].	2.48968e-117
NZ_CP011304.1\|WP_046663542.1\|4292979_4293636_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|236608	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional.	1.33194e-83
NZ_CP011304.1\|WP_046663530.1\|4277989_4278424_+\|endonuclease-domain-containing-protein	gnl\|CDD\|238509	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases.	3.54072e-43
NZ_CP011304.1\|WP_046663534.1\|4282957_4283584_+\|precorrin-8X-methylmutase	gnl\|CDD\|181352	PRK08285, cobH, precorrin-8X methylmutase; Reviewed.	3.66558e-128
NZ_CP011304.1\|WP_046663529.1\|4274380_4274962_+\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	4.70848e-34
NZ_CP011304.1\|WP_046660511.1\|4286786_4287776_-\|transposase	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.7635e-33
NZ_CP011304.1\|WP_046663535.1\|4283580_4284285_+\|precorrin-2-C(20)-methyltransferase	gnl\|CDD\|180341	PRK05990, PRK05990, precorrin-2 C(20)-methyltransferase; Reviewed.	2.51971e-94

>NZ_CP011304.1|WP_046663536.1|4284595_4285744_+|DNA-protecting-protein-DprA
MTDDRVYWLAWSSIAGVGPISLKRLYQHFGSVAVAWNASDSAIAEGAGFGKKLMVAVREGRSQIDPEALFAEHIQKNPLFWTPSDPEYPRFLREIPSPPPLLYYQGKVNLEENQGNIPTVAIVGTRNPTDHGRRWARRLSTLLAQQGFTIVSGMAEGIDGEAHQSCLKAGGRTIAVLGTGVDVVYPSRHRQLHADIQKQGLVISEHPAATQPNKAHFPSRNRIIAGLSRATIVIEAPERSGSLITASYANEFGGDIYALPNSPDIAAARGCLQLIHQGAEIIVSEEKLLEMLGAIPTTNQSAPLNLSPSLPLETSPAVNAAPPVNLEPRLAQVYQLFDRDALLFDIIVQKMQIPTSEVAGILLELELIGLVTQLPGMRYQKT
>NZ_CP011304.1|WP_046663535.1|4283580_4284285_+|precorrin-2-C(20)-methyltransferase
MNKLGKLYGLGIGPGDPELLTLKAHRILTTVPVIAYPTLESGKVLARAIVSDFIRPEQIEIPMPLPFSVERSSQPHYDIAAENIAEHLNLGRDVAVLCVGDPMLYGTFMYIFNRLCDRFSIEVVPGISSVMASAAMLGVPITYRNDVFSIMPATLKAEILRDRLAFIDAAAIIKLGRHFAKVRDILEELGLLERALYIERATLPNQQIIPITEVDPEAATYWSLILIPSKTKPQ
>NZ_CP011304.1|WP_046663534.1|4282957_4283584_+|precorrin-8X-methylmutase
MEYIKNGEEIYRKSFAIIRAETNWENLPDDLAHVAVRLIHSCGMTDITEDLEASPDAVKIGRNALAGGAAILCDSQMVANGITKARLPKNNPIICTLNHPEVTELARQINNTRSAAALELWRRHLAGAVVAIGNAPTALFRLLELLDQNVDKPALILGFPVGFVGAAESKIELATNSRGVPFITLHGRRGGSAIAAAAVNALAKENEL
>NZ_CP011304.1|WP_046663533.1|4281532_4282948_+|precorrin-3B-synthase
MNWLVEANACPGLFYGTAAQDGFLIRLRTPGGWLNSPQGKAIATWLEQWQTTIQVTNRANLQIRGLQKSPSLEEFQTLQKLGLAAHNPSIDHLRNIMSSPTAGIDCQESIDTRPLVQELDNFIQNYPSIAQLSPKFSIGIDGGGAVGIGTGSTMAWQHRYNEIQLSAIVLNNPKNLTSILCFRLALGGDKQLYDTDLLIEPENCLAVVKALVTVYIDYVQQNPNIKGKKPRMKHLLKDWGLTKYLEQVNYQLHRTSTGIIQGQEYQQAAHSTQPYFHLGIHPQKQPGLSYIGLSLRLGQLTANQLWGLAALSETFGSGQLRLTPWQTVILPDIPDEKVSELLPKLASLGLSASPGWDAGIVACSGKPGCAAAATATQIHASLLADYLKEHLTCNSPVNIHLTGCAKSCAQPGPAEITLLGTTIEENGQILEAYQVYMGDSQKFLETPIFEGEFTKIPPLIAQILSSQKSKI
>NZ_CP011304.1|WP_046663532.1|4280712_4281348_+|hypothetical-protein
MTTTADDVWKLLAELVEAQKETERCFQETERRFQETERILKEQSLETERILKEQSLKTDRQITRLSKEIGNLGGKWGRFVENMVAPACETLFLNRQIPVHQVSQRVRKRLDGKTLEIDVLVTNENHVLVVEVKSSLSVDDVKELIKNLTEFRQFFPEYNQKQLYGAVAGIEIEEGADKYAYRQGLFVLAQRGENVAILNDTEFQPKTWYDP
>NZ_CP011304.1|WP_046663531.1|4280007_4280655_+|hypothetical-protein
MTTTADDVWKLLAELVEAQKETERCFQETERRFQETERVLKEQSLKTERRFQETERILKEQSLKTDRQITRVSQEIGNLGGKWGRFVENMVAPACETLFLNRDIPVHQVSQRVRKRLDGKTLEIDVLVTNENHVLVVEVKSSLSVDDVKELIKNLTEFRQFFPEYNQKQLYGAVAGIEIEEGADKYAYRQGLFVLAQRGENVAILNDTEFQPKTW
>NZ_CP011304.1|WP_080949794.1|4278675_4279944_-|precorrin-6y-C5,15-methyltransferase-(decarboxylating)-subunit-CbiE
MADNEIVAIFFNMADRNCKSKWLSIIGIGEDGLEGLSSVGRSLLSLASVIVGGERHLAMLPPEDQRQKLLWTSPIQDSVNEIIRRRGQSVCVLASGDPMCYGIGVTLTRQIPLEEMTIIPSPSAFSLACSRLGWSLSEVETLSLCGRPPACLNGVLYPGAKLLVLSADAQTPALAARLLREGGFGESSITVLEHLGGTRERHIQGIANDWQFTDLADLNVIAISCISSHPPTLAPRLPGLPDSAYHHDGQLTKREVRAITLSRLAPLPGQLLWDVGAGCGSIAIEWLRSDRRCQGIAIEHHPTRLQYIADNAAALGTLHLQIVAGIAPSALEDLPQPDAIFIGGGITTPHLLETCWLALRPGGRLVANTVTIESELVLLQWHSKLGGELLRIGIEKAEPVGKFLGWKAMAPVTQWTVLKPRL
>NZ_CP011304.1|WP_046663530.1|4277989_4278424_+|endonuclease-domain-containing-protein
MQLTNHHHLPYNPKLVERAKELRKNMTKAERKLWYEYLKNFQYRVHRQRPIDQFIVDFYCPELKLVIEIDGDIHNREDAQNYDLERTQILSGYGLTVIRFTNQEVLSNFEGVCGVIGSLIPPTPLDKGGFDPSLLRGFDPPNPP
>NZ_CP011304.1|WP_046663529.1|4274380_4274962_+|Uma2-family-endonuclease
MSLSLITRKFTVEEYEKMTTEGIIKPDEKVELIRGEIIKMSPMGTRHAACIARLTQLFYRKFGDLILLGVQNPIRLNNNSQPEPDLSLLIPRSDFYVAAYPCPQDIYLIIEVSDSTLDYDRYTKIPLYAEANIQEVWIVNLKEECLEVYRHPLHGSYQAIQKYYRGEIIFIESFPAIELTLIEILGNKSEIKG
>NZ_CP011304.1|WP_066030221.1|4273502_4274150_-|hypothetical-protein
MLKKIAVPMGNIKSRNFMVKRKQPYSLIYLLTLVIGLVIAIAPDGQAQTPDSNTPASDPNELKPLNQADSVLSLQGGQRLVEEANAAINAAKYSVAVDKLNQARRIFNQLSNYHLQLANSFSGIDPKVFDSQRQSALNTGQMRDEATYKLALVHRAQNQPELAVPLLIQVIQSQNPTSELGQKSYQQLYEMGFVSTPISAPTPTSATPNNSPPRQ
>NZ_CP011304.1|WP_046660511.1|4286786_4287776_-|transposase
MKNYTWEYIQKYPKQTKRLLGIDYQQLEQLMALGKLIHRKNQSEIEKTKIRINQPGSGTPPKLSEEEQIVLMLVYLRHHLSFQILGLIFQVSESTAHNIFTYWQKLFEGELPPSLLEQIKKCQEEEIIIEQLRDYELIVDSAEQPVERPTDYQEQKIYYSGKQKRHTLKSQFIVLPKAEDIVDVVIGQPGPTSDIKICRQTLSKFDSQQTFIGDKAYLGENQIRTPDKKPKNGELTENQIKENKVLSSRRIFVEHLIRVVKVFKVVQERFRLNKSRYKSVLLTVCGLVRLRISALILEVIEGEQSGEVIDVIISHSFPSKLDFVSSNPD
>NZ_CP011304.1|WP_052734211.1|4288507_4290268_+|group-II-intron-reverse-transcriptase/maturase
MVLSSNEKVMNTATKPMYEWKDINWRKAERCVFKLSKRIFKASQRGDVKLVHKLQRLLLKSWYAKLIAVRRVSQDNQGKKTAGVDGIKSLTPKQRMALVNNLKPGNKSKPTRRVWIPKPNTDEKRPLGIPTMYERALQALVKLALEPEWEAKFEPNSYGFRPARSAHDAIGAIYISINKKPKYVLDADISKCFDKINHQKLLTKLQTYPKLRQQIKAWLKSGVMDGKNLFPTNEGTPQGGVISPLLANIALHGMEERVKQYAKTLKGNKSKNEQALTLIRYADDFVILHEDLKVIKECQEIIKQWLAEMGLELKPSKTRISHTLETYDDYVGFDFLGFNIRQYQVGKHHGAKSSKGVKLGFKTLIKPSAEKVKSHLKKLGEVVNSQKSSPQDALIKRLNPIIRGWSNYYSSVVSSKTFTDCDYYFFEKLKRWAYRRHPMKNKTWIMRKYWHTEGKDNWVFSTRGGKNPFKLARHLDTKIVRYVKVKGDKSPYDGDLIYWSSRMGKHPEMPPEKAILLKRQQGRCAYCGLYFQDGDILETDHIIPKSKGGKNNRDNKQLLHRHCHDSKTALDKTGTHDKEPLERGAV
>NZ_CP011304.1|WP_046663541.1|4292314_4292866_-|hypothetical-protein
MNNYQPEDVQWIKSLLRHDEGDSNPATEDILFLDEDNEEAHRFDLISAYIDNEVTVEERKLVQHWLDHDAAAKKLYRQLLGLQTNLKQIPVPVAMAGDRLAEQVFRKVDGQRRRQYYVYGGAIFTAMAIAVSSYFISGRNDPLSQMASGPGSISQEGDHLMIALNHPIMEIPTTEQPKENGQR
>NZ_CP011304.1|WP_046663542.1|4292979_4293636_-|sigma-70-family-RNA-polymerase-sigma-factor
MSQSIPASWSLEAKKSQNPLSPDKLSNYDLIARCQEGCQPDRAAFAELLRRYQAHVDKLLYHLAPDWQDRADLAQEVWIRVYRNINRLHEPLKFRGWLSRIATNLFYDELRKRKRVNHPISLDAPRRVEDGEIDWDIESDYPSPDEHLTTHEFYDQLQAAIADLPEAFRTTIILREIEGMAYEEIAEITGVSLGTVKSRIARARAKLQSVLQPYFTEG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP011304_1	1.2\|142777\|18\|NZ_CP011304\|CRISPRCasFinder	142777-142794	18	NZ_CP011304.1	1550360-1550377	0	1.0
NZ_CP011304_25	25.1\|3885631\|42\|NZ_CP011304\|CRISPRCasFinder	3885631-3885672	42	NZ_CP011304.1	1117009-1117050	0	1.0
NZ_CP011304_25	25.1\|3885631\|42\|NZ_CP011304\|CRISPRCasFinder	3885631-3885672	42	NZ_CP011304.1	1709798-1709839	0	1.0
NZ_CP011304_25	25.1\|3885631\|42\|NZ_CP011304\|CRISPRCasFinder	3885631-3885672	42	NZ_CP011304.1	1826634-1826675	0	1.0
NZ_CP011304_25	25.1\|3885631\|42\|NZ_CP011304\|CRISPRCasFinder	3885631-3885672	42	NZ_CP011304.1	2450803-2450844	0	1.0
NZ_CP011304_25	25.1\|3885631\|42\|NZ_CP011304\|CRISPRCasFinder	3885631-3885672	42	NZ_CP011304.1	2830001-2830042	0	1.0
NZ_CP011304_25	25.1\|3885631\|42\|NZ_CP011304\|CRISPRCasFinder	3885631-3885672	42	NZ_CP011304.1	3428726-3428767	0	1.0
NZ_CP011304_25	25.1\|3885631\|42\|NZ_CP011304\|CRISPRCasFinder	3885631-3885672	42	NZ_CP011304.1	3485185-3485226	0	1.0
NZ_CP011304_1	1.2\|142777\|18\|NZ_CP011304\|CRISPRCasFinder	142777-142794	18	NZ_CP011304.1	15976-15993	1	0.944
NZ_CP011304_1	1.2\|142777\|18\|NZ_CP011304\|CRISPRCasFinder	142777-142794	18	NZ_CP011304.1	287292-287309	1	0.944
NZ_CP011304_1	1.2\|142777\|18\|NZ_CP011304\|CRISPRCasFinder	142777-142794	18	NZ_CP011304.1	287306-287323	1	0.944
NZ_CP011304_1	1.2\|142777\|18\|NZ_CP011304\|CRISPRCasFinder	142777-142794	18	NZ_CP011304.1	675528-675545	1	0.944
NZ_CP011304_1	1.2\|142777\|18\|NZ_CP011304\|CRISPRCasFinder	142777-142794	18	NZ_CP011304.1	742640-742657	1	0.944
NZ_CP011304_1	1.2\|142777\|18\|NZ_CP011304\|CRISPRCasFinder	142777-142794	18	NZ_CP011304.1	1079141-1079158	1	0.944
NZ_CP011304_1	1.2\|142777\|18\|NZ_CP011304\|CRISPRCasFinder	142777-142794	18	NZ_CP011304.1	1282067-1282084	1	0.944
NZ_CP011304_1	1.2\|142777\|18\|NZ_CP011304\|CRISPRCasFinder	142777-142794	18	NZ_CP011304.1	1307434-1307451	1	0.944
NZ_CP011304_1	1.2\|142777\|18\|NZ_CP011304\|CRISPRCasFinder	142777-142794	18	NZ_CP011304.1	2065989-2066006	1	0.944
NZ_CP011304_1	1.2\|142777\|18\|NZ_CP011304\|CRISPRCasFinder	142777-142794	18	NZ_CP011304.1	2714191-2714208	1	0.944
NZ_CP011304_1	1.2\|142777\|18\|NZ_CP011304\|CRISPRCasFinder	142777-142794	18	NZ_CP011304.1	2731412-2731429	1	0.944
NZ_CP011304_1	1.2\|142777\|18\|NZ_CP011304\|CRISPRCasFinder	142777-142794	18	NZ_CP011304.1	3173703-3173720	1	0.944
NZ_CP011304_14	14.1\|2271815\|47\|NZ_CP011304\|CRISPRCasFinder	2271815-2271861	47	NZ_CP011304.1	313569-313615	1	0.979
NZ_CP011304_22	22.27\|3603206\|35\|NZ_CP011304\|CRISPRCasFinder,CRT	3603206-3603240	35	NZ_CP026286.1	5231-5265	1	0.971
NZ_CP011304_25	25.1\|3885631\|42\|NZ_CP011304\|CRISPRCasFinder	3885631-3885672	42	NZ_CP011304.1	1457212-1457253	1	0.976
NZ_CP011304_25	25.1\|3885631\|42\|NZ_CP011304\|CRISPRCasFinder	3885631-3885672	42	NZ_CP011304.1	2879271-2879312	1	0.976
NZ_CP011304_25	25.1\|3885631\|42\|NZ_CP011304\|CRISPRCasFinder	3885631-3885672	42	NZ_CP011304.1	3960102-3960143	1	0.976
NZ_CP011304_25	25.1\|3885631\|42\|NZ_CP011304\|CRISPRCasFinder	3885631-3885672	42	NZ_CP011304.1	4119955-4119996	1	0.976

1. spacer 1.2|142777|18|NZ_CP011304|CRISPRCasFinder matches to position: 1550360-1550377, mismatch: 0, identity: 1.0

tccccacttcccactccc	CRISPR spacer
tccccacttcccactccc	Protospacer
******************

2. spacer 25.1|3885631|42|NZ_CP011304|CRISPRCasFinder matches to position: 1117009-1117050, mismatch: 0, identity: 1.0

tttactggacggctacgccgtgcctttggcaacactgaaaaa	CRISPR spacer
tttactggacggctacgccgtgcctttggcaacactgaaaaa	Protospacer
******************************************

3. spacer 25.1|3885631|42|NZ_CP011304|CRISPRCasFinder matches to position: 1709798-1709839, mismatch: 0, identity: 1.0

tttactggacggctacgccgtgcctttggcaacactgaaaaa	CRISPR spacer
tttactggacggctacgccgtgcctttggcaacactgaaaaa	Protospacer
******************************************

4. spacer 25.1|3885631|42|NZ_CP011304|CRISPRCasFinder matches to position: 1826634-1826675, mismatch: 0, identity: 1.0

tttactggacggctacgccgtgcctttggcaacactgaaaaa	CRISPR spacer
tttactggacggctacgccgtgcctttggcaacactgaaaaa	Protospacer
******************************************

5. spacer 25.1|3885631|42|NZ_CP011304|CRISPRCasFinder matches to position: 2450803-2450844, mismatch: 0, identity: 1.0

tttactggacggctacgccgtgcctttggcaacactgaaaaa	CRISPR spacer
tttactggacggctacgccgtgcctttggcaacactgaaaaa	Protospacer
******************************************

6. spacer 25.1|3885631|42|NZ_CP011304|CRISPRCasFinder matches to position: 2830001-2830042, mismatch: 0, identity: 1.0

tttactggacggctacgccgtgcctttggcaacactgaaaaa	CRISPR spacer
tttactggacggctacgccgtgcctttggcaacactgaaaaa	Protospacer
******************************************

7. spacer 25.1|3885631|42|NZ_CP011304|CRISPRCasFinder matches to position: 3428726-3428767, mismatch: 0, identity: 1.0

tttactggacggctacgccgtgcctttggcaacactgaaaaa	CRISPR spacer
tttactggacggctacgccgtgcctttggcaacactgaaaaa	Protospacer
******************************************

8. spacer 25.1|3885631|42|NZ_CP011304|CRISPRCasFinder matches to position: 3485185-3485226, mismatch: 0, identity: 1.0

tttactggacggctacgccgtgcctttggcaacactgaaaaa	CRISPR spacer
tttactggacggctacgccgtgcctttggcaacactgaaaaa	Protospacer
******************************************

9. spacer 1.2|142777|18|NZ_CP011304|CRISPRCasFinder matches to position: 15976-15993, mismatch: 1, identity: 0.944

tccccacttcccactccc	CRISPR spacer
tccccacttcccacaccc	Protospacer
************** ***

10. spacer 1.2|142777|18|NZ_CP011304|CRISPRCasFinder matches to position: 287292-287309, mismatch: 1, identity: 0.944

tccccacttcccactccc	CRISPR spacer
tccccacttccctctccc	Protospacer
************ *****

11. spacer 1.2|142777|18|NZ_CP011304|CRISPRCasFinder matches to position: 287306-287323, mismatch: 1, identity: 0.944

tccccacttcccactccc	CRISPR spacer
tccccacttccctctccc	Protospacer
************ *****

12. spacer 1.2|142777|18|NZ_CP011304|CRISPRCasFinder matches to position: 675528-675545, mismatch: 1, identity: 0.944

tccccacttcccactccc	CRISPR spacer
tccccacttcccacttcc	Protospacer
***************.**

13. spacer 1.2|142777|18|NZ_CP011304|CRISPRCasFinder matches to position: 742640-742657, mismatch: 1, identity: 0.944

tccccacttcccactccc	CRISPR spacer
tccccacttcccacttcc	Protospacer
***************.**

14. spacer 1.2|142777|18|NZ_CP011304|CRISPRCasFinder matches to position: 1079141-1079158, mismatch: 1, identity: 0.944

tccccacttcccactccc	CRISPR spacer
tccccacttcccacttcc	Protospacer
***************.**

15. spacer 1.2|142777|18|NZ_CP011304|CRISPRCasFinder matches to position: 1282067-1282084, mismatch: 1, identity: 0.944

tccccacttcccactccc	CRISPR spacer
tccccacttcccacttcc	Protospacer
***************.**

16. spacer 1.2|142777|18|NZ_CP011304|CRISPRCasFinder matches to position: 1307434-1307451, mismatch: 1, identity: 0.944

tccccacttcccactccc	CRISPR spacer
tccccactccccactccc	Protospacer
********.*********

17. spacer 1.2|142777|18|NZ_CP011304|CRISPRCasFinder matches to position: 2065989-2066006, mismatch: 1, identity: 0.944

tccccacttcccactccc	CRISPR spacer
tccccacttcccacttcc	Protospacer
***************.**

18. spacer 1.2|142777|18|NZ_CP011304|CRISPRCasFinder matches to position: 2714191-2714208, mismatch: 1, identity: 0.944

tccccacttcccactccc	CRISPR spacer
tccccacttcccacaccc	Protospacer
************** ***

19. spacer 1.2|142777|18|NZ_CP011304|CRISPRCasFinder matches to position: 2731412-2731429, mismatch: 1, identity: 0.944

tccccacttcccactccc	CRISPR spacer
tccccacttcccacttcc	Protospacer
***************.**

20. spacer 1.2|142777|18|NZ_CP011304|CRISPRCasFinder matches to position: 3173703-3173720, mismatch: 1, identity: 0.944

tccccacttcccactccc	CRISPR spacer
tccccacttcccacaccc	Protospacer
************** ***

21. spacer 14.1|2271815|47|NZ_CP011304|CRISPRCasFinder matches to position: 313569-313615, mismatch: 1, identity: 0.979

taaacagtaaacagtaatcagtgagacactgttgatgggagtttttt	CRISPR spacer
taaacagtaaacagtaatcagtgagacactgttgatggaagtttttt	Protospacer
**************************************.********

22. spacer 22.27|3603206|35|NZ_CP011304|CRISPRCasFinder,CRT matches to position: 5231-5265, mismatch: 1, identity: 0.971

atctaactgtgacactttgagaattggcactcgat	CRISPR spacer
atctaactgtgacactttgagaattggcacttgat	Protospacer
*******************************.***

23. spacer 25.1|3885631|42|NZ_CP011304|CRISPRCasFinder matches to position: 1457212-1457253, mismatch: 1, identity: 0.976

tttactggacggctacgccgtgcctttggcaacactgaaaaa	CRISPR spacer
tttactggacggctacgccgtgcctttggcaacactaaaaaa	Protospacer
************************************.*****

24. spacer 25.1|3885631|42|NZ_CP011304|CRISPRCasFinder matches to position: 2879271-2879312, mismatch: 1, identity: 0.976

tttactggacggctacgccgtgcctttggcaacactgaaaaa	CRISPR spacer
ttcactggacggctacgccgtgcctttggcaacactgaaaaa	Protospacer
**.***************************************

25. spacer 25.1|3885631|42|NZ_CP011304|CRISPRCasFinder matches to position: 3960102-3960143, mismatch: 1, identity: 0.976

tttactggacggctacgccgtgcctttggcaacactgaaaaa	CRISPR spacer
tttactggacggctacgccgtgcctttggcaacactgagaaa	Protospacer
**************************************.***

26. spacer 25.1|3885631|42|NZ_CP011304|CRISPRCasFinder matches to position: 4119955-4119996, mismatch: 1, identity: 0.976

tttactggacggctacgccgtgcctttggcaacactgaaaaa	CRISPR spacer
tttactgaacggctacgccgtgcctttggcaacactgaaaaa	Protospacer
*******.**********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP011304_20	20.1\|3542043\|41\|NZ_CP011304\|CRISPRCasFinder	3542043-3542083	41	NZ_CP025929	Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence	60561-60601	0	1.0
NZ_CP011304_22	22.3\|3601486\|36\|NZ_CP011304\|CRISPRCasFinder,CRT	3601486-3601521	36	NC_001597	Microcystis aeruginosa plasmid pMA2 DNA, complete sequence	612-647	1	0.972
NZ_CP011304_22	22.27\|3603206\|35\|NZ_CP011304\|CRISPRCasFinder,CRT	3603206-3603240	35	NZ_CP026286	Microcystis aeruginosa NIES-2549 plasmid p1, complete sequence	5231-5265	1	0.971
NZ_CP011304_22	22.47\|3604646\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3604646-3604679	34	NC_001597	Microcystis aeruginosa plasmid pMA2 DNA, complete sequence	614-647	1	0.971
NZ_CP011304_24	24.10\|3611357\|34\|NZ_CP011304\|PILER-CR,CRISPRCasFinder,CRT	3611357-3611390	34	LC425515	Uncultured phage DNA, contig: NODE375	16260-16293	1	0.971
NZ_CP011304_24	24.23\|3612296\|35\|NZ_CP011304\|PILER-CR,CRISPRCasFinder,CRT	3612296-3612330	35	LC425515	Uncultured phage DNA, contig: NODE375	17435-17469	1	0.971
NZ_CP011304_13	13.2\|2096461\|22\|NZ_CP011304\|CRISPRCasFinder	2096461-2096482	22	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	575151-575172	2	0.909
NZ_CP011304_24	24.8\|3611215\|34\|NZ_CP011304\|PILER-CR,CRISPRCasFinder,CRT	3611215-3611248	34	LC425515	Uncultured phage DNA, contig: NODE375	16292-16325	2	0.941
NZ_CP011304_22	22.4\|3601559\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3601559-3601592	34	NC_001597	Microcystis aeruginosa plasmid pMA2 DNA, complete sequence	3851-3884	3	0.912
NZ_CP011304_22	22.5\|3601630\|35\|NZ_CP011304\|CRISPRCasFinder,CRT	3601630-3601664	35	LC425518	Uncultured phage DNA, contig: NODE577	10228-10262	3	0.914
NZ_CP011304_22	22.32\|3603567\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3603567-3603600	34	NZ_CP026286	Microcystis aeruginosa NIES-2549 plasmid p1, complete sequence	4896-4929	3	0.912
NZ_CP011304_22	22.60\|3605575\|33\|NZ_CP011304\|CRISPRCasFinder,CRT,PILER-CR	3605575-3605607	33	NZ_CP026286	Microcystis aeruginosa NIES-2549 plasmid p1, complete sequence	1301-1333	3	0.909
NZ_CP011304_2	2.1\|455996\|28\|NZ_CP011304\|CRISPRCasFinder	455996-456023	28	MG592600	Vibrio phage 1.236.O._10N.261.52.C4, partial genome	19899-19926	6	0.786
NZ_CP011304_22	22.50\|3604859\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3604859-3604892	34	KM359505	Prochlorococcus phage P-TIM68, complete genome	142848-142881	6	0.824
NZ_CP011304_22	22.58\|3605432\|34\|NZ_CP011304\|CRISPRCasFinder,CRT,PILER-CR	3605432-3605465	34	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	66570-66603	6	0.824
NZ_CP011304_22	22.58\|3605432\|34\|NZ_CP011304\|CRISPRCasFinder,CRT,PILER-CR	3605432-3605465	34	NZ_LR027520	Thermus thermophilus isolate TTHNAR1 plasmid 4, complete sequence	338425-338458	6	0.824
NZ_CP011304_22	22.58\|3605432\|34\|NZ_CP011304\|CRISPRCasFinder,CRT,PILER-CR	3605432-3605465	34	NC_005838	Thermus thermophilus HB27 plasmid pTT27, complete sequence	168234-168267	6	0.824
NZ_CP011304_28	28.1\|4280151\|26\|NZ_CP011304\|CRISPRCasFinder	4280151-4280176	26	NZ_CP049700	Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2a, complete sequence	172136-172161	6	0.769
NZ_CP011304_22	22.10\|3601988\|33\|NZ_CP011304\|CRISPRCasFinder,CRT	3601988-3602020	33	NC_002679	Mesorhizobium japonicum MAFF 303099 plasmid pMLa, complete sequence	151254-151286	7	0.788
NZ_CP011304_22	22.50\|3604859\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3604859-3604892	34	HQ633071	Synechococcus phage S-SKS1 genomic sequence	23104-23137	7	0.794
NZ_CP011304_24	24.9\|3611286\|34\|NZ_CP011304\|PILER-CR,CRISPRCasFinder,CRT	3611286-3611319	34	LC425515	Uncultured phage DNA, contig: NODE375	18824-18857	7	0.794
NZ_CP011304_13	13.1\|2096407\|31\|NZ_CP011304\|CRISPRCasFinder	2096407-2096437	31	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	729906-729936	8	0.742
NZ_CP011304_13	13.1\|2096407\|31\|NZ_CP011304\|CRISPRCasFinder	2096407-2096437	31	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	730376-730406	8	0.742
NZ_CP011304_22	22.20\|3602708\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3602708-3602741	34	NC_014824	Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL01, complete sequence	159295-159328	8	0.765
NZ_CP011304_22	22.35\|3603781\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3603781-3603814	34	MK016664	Synechococcus phage S-B68, complete genome	7447-7480	8	0.765
NZ_CP011304_22	22.41\|3604212\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3604212-3604245	34	NC_004959	Lactococcus lactis W-37 plasmid pSRQ900, complete sequence	4719-4752	8	0.765
NZ_CP011304_22	22.41\|3604212\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3604212-3604245	34	NZ_CP034186	Deinococcus sp. S14-83 strain S14-83T plasmid unnamed2, complete sequence	398391-398424	8	0.765
NZ_CP011304_22	22.41\|3604212\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3604212-3604245	34	NZ_LR214939	Mycoplasma salivarium strain NCTC10113 plasmid 2	194212-194245	8	0.765
NZ_CP011304_22	22.51\|3604930\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3604930-3604963	34	CP003352	Enterococcus faecium Aus0004 plasmid AUS0004_p1, complete sequence	49423-49456	8	0.765
NZ_CP011304_22	22.51\|3604930\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3604930-3604963	34	NZ_LR135294	Enterococcus faecium isolate E7237 plasmid 2	97964-97997	8	0.765
NZ_CP011304_22	22.51\|3604930\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3604930-3604963	34	NC_021995	Enterococcus faecium Aus0085 plasmid p2, complete sequence	58959-58992	8	0.765
NZ_CP011304_22	22.51\|3604930\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3604930-3604963	34	NZ_LR135193	Enterococcus faecium isolate E4438 plasmid 3	58722-58755	8	0.765
NZ_CP011304_22	22.51\|3604930\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3604930-3604963	34	NZ_LT598666	Enterococcus faecium isolate Ef_aus00233 plasmid 4	64296-64329	8	0.765
NZ_CP011304_22	22.51\|3604930\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3604930-3604963	34	NZ_LR135204	Enterococcus faecium isolate E7171 plasmid 2	205040-205073	8	0.765
NZ_CP011304_22	22.51\|3604930\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3604930-3604963	34	NZ_CP040851	Enterococcus faecium strain F17E0263 plasmid p_unnamned2, complete sequence	17719-17752	8	0.765
NZ_CP011304_22	22.58\|3605432\|34\|NZ_CP011304\|CRISPRCasFinder,CRT,PILER-CR	3605432-3605465	34	NC_010510	Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence	463088-463121	8	0.765
NZ_CP011304_22	22.58\|3605432\|34\|NZ_CP011304\|CRISPRCasFinder,CRT,PILER-CR	3605432-3605465	34	NZ_CP021084	Deinococcus ficus strain CC-FR2-10 plasmid pDFI3, complete sequence	226357-226390	8	0.765
NZ_CP011304_22	22.60\|3605575\|33\|NZ_CP011304\|CRISPRCasFinder,CRT,PILER-CR	3605575-3605607	33	NZ_CP054618	Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence	163922-163954	8	0.758
NZ_CP011304_16	16.1\|2929139\|41\|NZ_CP011304\|CRISPRCasFinder	2929139-2929179	41	NZ_CP043057	Dolichospermum sp. UHCC 0315A plasmid pUHCC0315a, complete sequence	11928-11968	9	0.78
NZ_CP011304_22	22.9\|3601917\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP007616	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence	70039-70072	9	0.735
NZ_CP011304_22	22.9\|3601917\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP011152	Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence	276184-276217	9	0.735
NZ_CP011304_22	22.9\|3601917\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP045607	Bacillus cereus strain SB1 plasmid p1, complete sequence	579232-579265	9	0.735
NZ_CP011304_22	22.9\|3601917\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP016589	Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence	167659-167692	9	0.735
NZ_CP011304_22	22.9\|3601917\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP004877	Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB431, complete sequence	295955-295988	9	0.735
NZ_CP011304_22	22.9\|3601917\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP004877	Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB431, complete sequence	297112-297145	9	0.735
NZ_CP011304_22	22.9\|3601917\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NC_020394	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-233, complete sequence	93242-93275	9	0.735
NZ_CP011304_22	22.9\|3601917\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP014283	Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence	242169-242202	9	0.735
NZ_CP011304_22	22.9\|3601917\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP011350	Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence	366658-366691	9	0.735
NZ_CP011304_22	22.9\|3601917\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP022446	Bacillus cereus C1L plasmid pC1L1, complete sequence	375882-375915	9	0.735
NZ_CP011304_22	22.9\|3601917\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP032614	Bacillus thuringiensis strain QZL38 plasmid p.1, complete sequence	415758-415791	9	0.735
NZ_CP011304_22	22.9\|3601917\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP004860	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence	308382-308415	9	0.735
NZ_CP011304_22	22.9\|3601917\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP053952	Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence	210421-210454	9	0.735
NZ_CP011304_22	22.9\|3601917\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP011154	Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence	270698-270731	9	0.735
NZ_CP011304_22	22.9\|3601917\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	CP020755	Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence	330704-330737	9	0.735
NZ_CP011304_22	22.9\|3601917\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP010090	Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB426, complete sequence	299056-299089	9	0.735
NZ_CP011304_22	22.9\|3601917\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP021062	Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence	546188-546221	9	0.735
NZ_CP011304_22	22.9\|3601917\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3601917-3601950	34	NZ_CP053949	Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence	340571-340604	9	0.735
NZ_CP011304_22	22.35\|3603781\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3603781-3603814	34	JX173487	Pseudomonas phage Phi-S1, complete genome	19330-19363	9	0.735
NZ_CP011304_22	22.35\|3603781\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3603781-3603814	34	MT094431	Pseudomonas phage BIM BV-46, complete genome	18730-18763	9	0.735
NZ_CP011304_22	22.35\|3603781\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3603781-3603814	34	KP025626	Pseudomonas phage Pf-10, complete genome	19066-19099	9	0.735
NZ_CP011304_22	22.35\|3603781\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3603781-3603814	34	NC_015264	Pseudomonas phage phiIBB-PF7A, complete genome	18428-18461	9	0.735
NZ_CP011304_22	22.50\|3604859\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3604859-3604892	34	NZ_CP007648	Lactobacillus salivarius strain JCM1046 plasmid pMP1046B, complete sequence	57503-57536	9	0.735
NZ_CP011304_22	22.50\|3604859\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3604859-3604892	34	NC_011258	Borrelia recurrentis A1 plasmid pl37, complete sequence	13925-13958	9	0.735
NZ_CP011304_22	22.50\|3604859\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3604859-3604892	34	NC_011260	Borrelia recurrentis A1 plasmid pl53, complete sequence	29542-29575	9	0.735
NZ_CP011304_22	22.50\|3604859\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3604859-3604892	34	NC_018686	Bacillus thuringiensis MC28 plasmid pMC183, complete sequence	177173-177206	9	0.735
NZ_CP011304_22	22.53\|3605072\|37\|NZ_CP011304\|CRISPRCasFinder,CRT,PILER-CR	3605072-3605108	37	MN694138	Marine virus AFVG_250M1080, complete genome	31429-31465	9	0.757
NZ_CP011304_22	22.53\|3605072\|37\|NZ_CP011304\|CRISPRCasFinder,CRT,PILER-CR	3605072-3605108	37	MN693684	Marine virus AFVG_250M122, complete genome	11469-11505	9	0.757
NZ_CP011304_22	22.57\|3605360\|35\|NZ_CP011304\|CRISPRCasFinder,CRT,PILER-CR	3605360-3605394	35	NZ_LN554848	Aliivibrio wodanis genome assembly AWOD1, plasmid : pAWOD920	24799-24833	9	0.743
NZ_CP011304_22	22.58\|3605432\|34\|NZ_CP011304\|CRISPRCasFinder,CRT,PILER-CR	3605432-3605465	34	KX815338	Streptomyces phage Joe, complete genome	33035-33068	9	0.735
NZ_CP011304_24	24.15\|3611719\|35\|NZ_CP011304\|PILER-CR,CRISPRCasFinder,CRT	3611719-3611753	35	NC_014842	Pantoea sp. At-9b plasmid pPAT9B05, complete sequence	90645-90679	9	0.743
NZ_CP011304_21	21.1\|3599716\|34\|NZ_CP011304\|CRISPRCasFinder	3599716-3599749	34	MN693599	Marine virus AFVG_25M122, complete genome	5114-5147	10	0.706
NZ_CP011304_21	21.1\|3599716\|34\|NZ_CP011304\|CRISPRCasFinder	3599716-3599749	34	MN693251	Marine virus AFVG_25M125, complete genome	29270-29303	10	0.706
NZ_CP011304_21	21.1\|3599716\|34\|NZ_CP011304\|CRISPRCasFinder	3599716-3599749	34	MN693438	Marine virus AFVG_25M124, complete genome	4483-4516	10	0.706
NZ_CP011304_22	22.34\|3603710\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3603710-3603743	34	KX190834	Bacillus phage BMBtpLA3, complete genome	20505-20538	10	0.706
NZ_CP011304_22	22.34\|3603710\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3603710-3603743	34	NC_011645	Bacillus phage TP21-L, complete genome	3442-3475	10	0.706
NZ_CP011304_22	22.34\|3603710\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3603710-3603743	34	KF296717	Bacillus phage proCM3, complete genome	21675-21708	10	0.706
NZ_CP011304_22	22.34\|3603710\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3603710-3603743	34	JX887877	Bacillus phage vB_BtS_BMBtp2, complete genome	27129-27162	10	0.706
NZ_CP011304_22	22.34\|3603710\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3603710-3603743	34	MT136606	Bacillus phage vB_BceS_KLEB30-3S, complete genome	3293-3326	10	0.706
NZ_CP011304_22	22.41\|3604212\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3604212-3604245	34	NC_013940	Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence	94658-94691	10	0.706
NZ_CP011304_22	22.50\|3604859\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3604859-3604892	34	MN693898	Marine virus AFVG_250M937, complete genome	4297-4330	10	0.706
NZ_CP011304_22	22.50\|3604859\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3604859-3604892	34	MN694171	Marine virus AFVG_250M572, complete genome	2861-2894	10	0.706
NZ_CP011304_22	22.50\|3604859\|34\|NZ_CP011304\|CRISPRCasFinder,CRT	3604859-3604892	34	MN693979	Marine virus AFVG_250M571, complete genome	50870-50903	10	0.706
NZ_CP011304_22	22.58\|3605432\|34\|NZ_CP011304\|CRISPRCasFinder,CRT,PILER-CR	3605432-3605465	34	MH271308	Microbacterium phage Percival, complete genome	38089-38122	11	0.676
NZ_CP011304_22	22.64\|3605859\|36\|NZ_CP011304\|CRISPRCasFinder,CRT,PILER-CR	3605859-3605894	36	NZ_CP025929	Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence	7229-7264	11	0.694
NZ_CP011304_24	24.2\|3610785\|34\|NZ_CP011304\|PILER-CR,CRISPRCasFinder,CRT	3610785-3610818	34	NZ_CP039925	Agrobacterium tumefaciens strain CFBP7129 plasmid pAtCFBP7129b, complete sequence	91042-91075	11	0.676
NZ_CP011304_22	22.56\|3605288\|35\|NZ_CP011304\|CRISPRCasFinder,CRT,PILER-CR	3605288-3605322	35	LC547238	Entercoccus phage phiM1EF2 DNA, nearly complete genome	55814-55848	12	0.657

1. spacer 20.1|3542043|41|NZ_CP011304|CRISPRCasFinder matches to NZ_CP025929 (Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence) position: , mismatch: 0, identity: 1.0

cagaatcgagaaacacagcgagaaaacaagcgagagtgttg	CRISPR spacer
cagaatcgagaaacacagcgagaaaacaagcgagagtgttg	Protospacer
*****************************************

2. spacer 22.3|3601486|36|NZ_CP011304|CRISPRCasFinder,CRT matches to NC_001597 (Microcystis aeruginosa plasmid pMA2 DNA, complete sequence) position: , mismatch: 1, identity: 0.972

acggttcaaccgacctaaaacaactattagcagggg	CRISPR spacer
acggttcaaccgacctgaaacaactattagcagggg	Protospacer
****************.*******************

3. spacer 22.27|3603206|35|NZ_CP011304|CRISPRCasFinder,CRT matches to NZ_CP026286 (Microcystis aeruginosa NIES-2549 plasmid p1, complete sequence) position: , mismatch: 1, identity: 0.971

atctaactgtgacactttgagaattggcactcgat	CRISPR spacer
atctaactgtgacactttgagaattggcacttgat	Protospacer
*******************************.***

4. spacer 22.47|3604646|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NC_001597 (Microcystis aeruginosa plasmid pMA2 DNA, complete sequence) position: , mismatch: 1, identity: 0.971

ggttcaaccgacctaaaacaactattagcagggg	CRISPR spacer
ggttcaaccgacctgaaacaactattagcagggg	Protospacer
**************.*******************

5. spacer 24.10|3611357|34|NZ_CP011304|PILER-CR,CRISPRCasFinder,CRT matches to LC425515 (Uncultured phage DNA, contig: NODE375) position: , mismatch: 1, identity: 0.971

aagctttctttcagtacccggctcacaagcctga	CRISPR spacer
aagctttcttccagtacccggctcacaagcctga	Protospacer
**********.***********************

6. spacer 24.23|3612296|35|NZ_CP011304|PILER-CR,CRISPRCasFinder,CRT matches to LC425515 (Uncultured phage DNA, contig: NODE375) position: , mismatch: 1, identity: 0.971

agtcttctggcaattaggccgcgccctaaaattgt	CRISPR spacer
agtcttctggcaactaggccgcgccctaaaattgt	Protospacer
*************.*********************

7. spacer 13.2|2096461|22|NZ_CP011304|CRISPRCasFinder matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 2, identity: 0.909

gctcagtattggcagtgttggc	CRISPR spacer
acttagtattggcagtgttggc	Protospacer
.**.******************

8. spacer 24.8|3611215|34|NZ_CP011304|PILER-CR,CRISPRCasFinder,CRT matches to LC425515 (Uncultured phage DNA, contig: NODE375) position: , mismatch: 2, identity: 0.941

gaaaccgaagattaattttatcagactcaaacct	CRISPR spacer
gaaaccgaagattaatcttatcagactcaaatct	Protospacer
****************.**************.**

9. spacer 22.4|3601559|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NC_001597 (Microcystis aeruginosa plasmid pMA2 DNA, complete sequence) position: , mismatch: 3, identity: 0.912

gtttttcggctatttttagcccaattctgtagga	CRISPR spacer
attttttggctatttttagcccaattctgtacga	Protospacer
.*****.************************ **

10. spacer 22.5|3601630|35|NZ_CP011304|CRISPRCasFinder,CRT matches to LC425518 (Uncultured phage DNA, contig: NODE577) position: , mismatch: 3, identity: 0.914

aagtggaattaatgcttaaaaatactgctgaattg	CRISPR spacer
aagtggagttaatgctcaaaaatactgctgaatta	Protospacer
*******.********.*****************.

11. spacer 22.32|3603567|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NZ_CP026286 (Microcystis aeruginosa NIES-2549 plasmid p1, complete sequence) position: , mismatch: 3, identity: 0.912

aagaattttttcgagattgggagaaataggaagt	CRISPR spacer
gagaattttttcgagattgggagaaataggtagc	Protospacer
.***************************** **.

12. spacer 22.60|3605575|33|NZ_CP011304|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026286 (Microcystis aeruginosa NIES-2549 plasmid p1, complete sequence) position: , mismatch: 3, identity: 0.909

atggcgcggccgatgatgctttttccttcccct	CRISPR spacer
atggcacggccgataatgctttttccttccccc	Protospacer
*****.********.*****************.

13. spacer 2.1|455996|28|NZ_CP011304|CRISPRCasFinder matches to MG592600 (Vibrio phage 1.236.O._10N.261.52.C4, partial genome) position: , mismatch: 6, identity: 0.786

gattcatgaatcaaccctacaaagtatt	CRISPR spacer
agtacatgaaccaaccctaccaagtatc	Protospacer
..* ******.********* ******.

14. spacer 22.50|3604859|34|NZ_CP011304|CRISPRCasFinder,CRT matches to KM359505 (Prochlorococcus phage P-TIM68, complete genome) position: , mismatch: 6, identity: 0.824

gaaaaagaatttgagagaaataagagaagatttg	CRISPR spacer
ggtgtaggatttgacagaaataagagaagatttg	Protospacer
*. . **.****** *******************

15. spacer 22.58|3605432|34|NZ_CP011304|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 6, identity: 0.824

ccccccttccccctccggcccgacc--ggcgatcga	CRISPR spacer
ccccccttccccctcctggccgacccggacgacc--	Protospacer
**************** * ******  *.***.*

16. spacer 22.58|3605432|34|NZ_CP011304|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR027520 (Thermus thermophilus isolate TTHNAR1 plasmid 4, complete sequence) position: , mismatch: 6, identity: 0.824

ccccccttccccctccggcccgacc--ggcgatcga	CRISPR spacer
ccccccttccccctcctggccgacccggacgacc--	Protospacer
**************** * ******  *.***.*

17. spacer 22.58|3605432|34|NZ_CP011304|CRISPRCasFinder,CRT,PILER-CR matches to NC_005838 (Thermus thermophilus HB27 plasmid pTT27, complete sequence) position: , mismatch: 6, identity: 0.824

ccccccttccccctccggcccgacc--ggcgatcga	CRISPR spacer
ccccccttccccctcctggccgacccggacgacc--	Protospacer
**************** * ******  *.***.*

18. spacer 28.1|4280151|26|NZ_CP011304|CRISPRCasFinder matches to NZ_CP049700 (Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2a, complete sequence) position: , mismatch: 6, identity: 0.769

gcgacgctttcaagaaaccgagcgca	CRISPR spacer
cgagcgctttccagaaaccgagcgcg	Protospacer
  ..******* *************.

19. spacer 22.10|3601988|33|NZ_CP011304|CRISPRCasFinder,CRT matches to NC_002679 (Mesorhizobium japonicum MAFF 303099 plasmid pMLa, complete sequence) position: , mismatch: 7, identity: 0.788

ctgtatcgtgccgtcgatttcatccccatagat	CRISPR spacer
atgtaccgggccgtcgatttcatccgaagatat	Protospacer
 ****.** ****************  * * **

20. spacer 22.50|3604859|34|NZ_CP011304|CRISPRCasFinder,CRT matches to HQ633071 (Synechococcus phage S-SKS1 genomic sequence) position: , mismatch: 7, identity: 0.794

gaaaaagaatttgagagaaataagagaagatttg	CRISPR spacer
gaaagatctgttgagacaaataagaaaagatttg	Protospacer
****.*    ****** ********.********

21. spacer 24.9|3611286|34|NZ_CP011304|PILER-CR,CRISPRCasFinder,CRT matches to LC425515 (Uncultured phage DNA, contig: NODE375) position: , mismatch: 7, identity: 0.794

tgccgaaaggcaaattcgcaacttttgcggattt	CRISPR spacer
ctttaaaagggaaattcgcaaattttgcggattt	Protospacer
. ...***** ********** ************

22. spacer 13.1|2096407|31|NZ_CP011304|CRISPRCasFinder matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 8, identity: 0.742

tttaagtctcgctagtgccagcagcatttta	CRISPR spacer
aataagtctcgctagtgtcagcggcgatcca	Protospacer
  ***************.****.**. *..*

23. spacer 13.1|2096407|31|NZ_CP011304|CRISPRCasFinder matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 8, identity: 0.742

tttaagtctcgctagtgccagcagcatttta	CRISPR spacer
aataagtctcgctagtgtcagcggcgatcca	Protospacer
  ***************.****.**. *..*

24. spacer 22.20|3602708|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NC_014824 (Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL01, complete sequence) position: , mismatch: 8, identity: 0.765

gtttgatactgcaattataccta-tttgtgattat	CRISPR spacer
tgttgatactgcaaagatacctattttatgttca-	Protospacer
  ************  ******* ***.** *.*

25. spacer 22.35|3603781|34|NZ_CP011304|CRISPRCasFinder,CRT matches to MK016664 (Synechococcus phage S-B68, complete genome) position: , mismatch: 8, identity: 0.765

atcaatcaag---aaactcaagaaagcaatcaagaaa	CRISPR spacer
---tcttgagcgcaaactcaagaaagcaaacaagaaa	Protospacer
     *..**   **************** *******

26. spacer 22.41|3604212|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NC_004959 (Lactococcus lactis W-37 plasmid pSRQ900, complete sequence) position: , mismatch: 8, identity: 0.765

agtacaaataaaagattatgtaacttttattagt	CRISPR spacer
aatacaaataaaaaattatggaactttcgaaaat	Protospacer
*.***********.****** ******..  *.*

27. spacer 22.41|3604212|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NZ_CP034186 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

agtacaaataaaagattatgtaacttttattagt	CRISPR spacer
aaaatcgagaaaagattatgaaacatttattagt	Protospacer
*. *. .* *********** *** *********

28. spacer 22.41|3604212|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 8, identity: 0.765

agtacaaataaaagattatgtaacttttattagt	CRISPR spacer
attatgatgaaaaaattatggaacttttattaga	Protospacer
* **..*  ****.****** ************

29. spacer 22.51|3604930|34|NZ_CP011304|CRISPRCasFinder,CRT matches to CP003352 (Enterococcus faecium Aus0004 plasmid AUS0004_p1, complete sequence) position: , mismatch: 8, identity: 0.765

ctatcagaaaaactgttttatctgttgccactaa	CRISPR spacer
ctatcagaaatactgttttatttgcttcacttat	Protospacer
********** **********.**.* *  .**

30. spacer 22.51|3604930|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NZ_LR135294 (Enterococcus faecium isolate E7237 plasmid 2) position: , mismatch: 8, identity: 0.765

ctatcagaaaaactgttttatctgttgccactaa	CRISPR spacer
ctatcagaaatactgttttatttgcttcacttat	Protospacer
********** **********.**.* *  .**

31. spacer 22.51|3604930|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NC_021995 (Enterococcus faecium Aus0085 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.765

ctatcagaaaaactgttttatctgttgccactaa	CRISPR spacer
ctatcagaaatactgttttatttgcttcacttat	Protospacer
********** **********.**.* *  .**

32. spacer 22.51|3604930|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NZ_LR135193 (Enterococcus faecium isolate E4438 plasmid 3) position: , mismatch: 8, identity: 0.765

ctatcagaaaaactgttttatctgttgccactaa	CRISPR spacer
ctatcagaaatactgttttatttgcttcacttat	Protospacer
********** **********.**.* *  .**

33. spacer 22.51|3604930|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NZ_LT598666 (Enterococcus faecium isolate Ef_aus00233 plasmid 4) position: , mismatch: 8, identity: 0.765

ctatcagaaaaactgttttatctgttgccactaa	CRISPR spacer
ctatcagaaatactgttttatttgcttcacttat	Protospacer
********** **********.**.* *  .**

34. spacer 22.51|3604930|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NZ_LR135204 (Enterococcus faecium isolate E7171 plasmid 2) position: , mismatch: 8, identity: 0.765

ctatcagaaaaactgttttatctgttgccactaa	CRISPR spacer
ctatcagaaatactgttttatttgcttcacttat	Protospacer
********** **********.**.* *  .**

35. spacer 22.51|3604930|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NZ_CP040851 (Enterococcus faecium strain F17E0263 plasmid p_unnamned2, complete sequence) position: , mismatch: 8, identity: 0.765

ctatcagaaaaactgttttatctgttgccactaa	CRISPR spacer
ctatcagaaatactgttttatttgcttcacttat	Protospacer
********** **********.**.* *  .**

36. spacer 22.58|3605432|34|NZ_CP011304|CRISPRCasFinder,CRT,PILER-CR matches to NC_010510 (Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence) position: , mismatch: 8, identity: 0.765

ccccccttccccctccggcccgaccggcgatcga	CRISPR spacer
gcggccggcctcctccggcccgagcggcgatcgg	Protospacer
 *  **  **.************ *********.

37. spacer 22.58|3605432|34|NZ_CP011304|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021084 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI3, complete sequence) position: , mismatch: 8, identity: 0.765

ccccccttccccctccggcccgaccggcgatcga	CRISPR spacer
ccgctcgcccccttccggccggaccggcgatccc	Protospacer
** *.* .****.******* ***********

38. spacer 22.60|3605575|33|NZ_CP011304|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054618 (Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.758

atggcgcggccgatgatgctttttccttcccct	CRISPR spacer
agggcgcggccgatggtgctctttccgctgccg	Protospacer
* *************.****.***** .. **

39. spacer 16.1|2929139|41|NZ_CP011304|CRISPRCasFinder matches to NZ_CP043057 (Dolichospermum sp. UHCC 0315A plasmid pUHCC0315a, complete sequence) position: , mismatch: 9, identity: 0.78

acagcgggcgttgggtttccttgcgtcaacccaacctacct	CRISPR spacer
tatgatcatgttgggtttccttgcgtcaacccaacctactt	Protospacer
   *   ..******************************.*

40. spacer 22.9|3601917|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NZ_CP007616 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

41. spacer 22.9|3601917|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NZ_CP011152 (Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

42. spacer 22.9|3601917|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NZ_CP045607 (Bacillus cereus strain SB1 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

43. spacer 22.9|3601917|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NZ_CP016589 (Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

44. spacer 22.9|3601917|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NZ_CP004877 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB431, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

45. spacer 22.9|3601917|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NZ_CP004877 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB431, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

46. spacer 22.9|3601917|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NC_020394 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-233, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

47. spacer 22.9|3601917|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NZ_CP014283 (Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

48. spacer 22.9|3601917|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NZ_CP011350 (Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

49. spacer 22.9|3601917|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NZ_CP022446 (Bacillus cereus C1L plasmid pC1L1, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

50. spacer 22.9|3601917|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NZ_CP032614 (Bacillus thuringiensis strain QZL38 plasmid p.1, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

51. spacer 22.9|3601917|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NZ_CP004860 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

52. spacer 22.9|3601917|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NZ_CP053952 (Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

53. spacer 22.9|3601917|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NZ_CP011154 (Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

54. spacer 22.9|3601917|34|NZ_CP011304|CRISPRCasFinder,CRT matches to CP020755 (Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

55. spacer 22.9|3601917|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NZ_CP010090 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB426, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

56. spacer 22.9|3601917|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NZ_CP021062 (Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

57. spacer 22.9|3601917|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NZ_CP053949 (Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

accccgcag-----cactcggatcgatttacgattacct	CRISPR spacer
-----gcaaatttccactccgatggatttacgattacca	Protospacer
     ***.     ***** *** **************

58. spacer 22.35|3603781|34|NZ_CP011304|CRISPRCasFinder,CRT matches to JX173487 (Pseudomonas phage Phi-S1, complete genome) position: , mismatch: 9, identity: 0.735

atcaatcaagaaactcaagaaagcaatcaagaaa	CRISPR spacer
ctttggtaagaaactcaagaaggcattcaagaag	Protospacer
 *. . .**************.*** *******.

59. spacer 22.35|3603781|34|NZ_CP011304|CRISPRCasFinder,CRT matches to MT094431 (Pseudomonas phage BIM BV-46, complete genome) position: , mismatch: 9, identity: 0.735

atcaatcaagaaactcaagaaagcaatcaagaaa	CRISPR spacer
ctttggtaagaaactcaagaaggcattcaagaag	Protospacer
 *. . .**************.*** *******.

60. spacer 22.35|3603781|34|NZ_CP011304|CRISPRCasFinder,CRT matches to KP025626 (Pseudomonas phage Pf-10, complete genome) position: , mismatch: 9, identity: 0.735

atcaatcaagaaactcaagaaagcaatcaagaaa	CRISPR spacer
ctttggtaagaaactcaagaaggcattcaagaag	Protospacer
 *. . .**************.*** *******.

61. spacer 22.35|3603781|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NC_015264 (Pseudomonas phage phiIBB-PF7A, complete genome) position: , mismatch: 9, identity: 0.735

atcaatcaagaaactcaagaaagcaatcaagaaa	CRISPR spacer
ctttggtaagaaactcaagaaggcattcaagaag	Protospacer
 *. . .**************.*** *******.

62. spacer 22.50|3604859|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NZ_CP007648 (Lactobacillus salivarius strain JCM1046 plasmid pMP1046B, complete sequence) position: , mismatch: 9, identity: 0.735

gaaaaagaatttgagagaaataagagaagatttg	CRISPR spacer
actaaagaaaatgagagaaataagagaagaccaa	Protospacer
.  ******  *******************.. .

63. spacer 22.50|3604859|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NC_011258 (Borrelia recurrentis A1 plasmid pl37, complete sequence) position: , mismatch: 9, identity: 0.735

gaaaaagaatttgagagaaataagagaagatttg	CRISPR spacer
tgaaggaagttagagagaaattagagaagatttt	Protospacer
 .**...*.** ********* ***********

64. spacer 22.50|3604859|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NC_011260 (Borrelia recurrentis A1 plasmid pl53, complete sequence) position: , mismatch: 9, identity: 0.735

gaaaaagaatttgagagaaataagagaagatttg	CRISPR spacer
tgaaggaagttagagagaaattagagaagatttt	Protospacer
 .**...*.** ********* ***********

65. spacer 22.50|3604859|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NC_018686 (Bacillus thuringiensis MC28 plasmid pMC183, complete sequence) position: , mismatch: 9, identity: 0.735

gaaaaagaatttgagagaaataagagaagatttg	CRISPR spacer
aaaaaagaatttgagaataataagaagactttaa	Protospacer
.***************. *******..*  ** .

66. spacer 22.53|3605072|37|NZ_CP011304|CRISPRCasFinder,CRT,PILER-CR matches to MN694138 (Marine virus AFVG_250M1080, complete genome) position: , mismatch: 9, identity: 0.757

attaatactatcttctctatttctttttgaattttgt	CRISPR spacer
ttgaatactatcttctgtaattctttttgattctcag	Protospacer
 * ************* ** ********** *.*..

67. spacer 22.53|3605072|37|NZ_CP011304|CRISPRCasFinder,CRT,PILER-CR matches to MN693684 (Marine virus AFVG_250M122, complete genome) position: , mismatch: 9, identity: 0.757

attaatactatcttctctatttctttttgaattttgt	CRISPR spacer
ttgaatactatcttctgtaattctttttgattctcag	Protospacer
 * ************* ** ********** *.*..

68. spacer 22.57|3605360|35|NZ_CP011304|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LN554848 (Aliivibrio wodanis genome assembly AWOD1, plasmid : pAWOD920) position: , mismatch: 9, identity: 0.743

cctcgctggtttcctttagttttttgatgttttcc	CRISPR spacer
tcatgatggtttcctttagtttattggtgtttggg	Protospacer
.* .* **************** ***.*****

69. spacer 22.58|3605432|34|NZ_CP011304|CRISPRCasFinder,CRT,PILER-CR matches to KX815338 (Streptomyces phage Joe, complete genome) position: , mismatch: 9, identity: 0.735

ccccccttccccctccggcccgaccggcgatcga	CRISPR spacer
cagcactacccccttcggcccgaccggcgagacg	Protospacer
*  * ** ******.***************   .

70. spacer 24.15|3611719|35|NZ_CP011304|PILER-CR,CRISPRCasFinder,CRT matches to NC_014842 (Pantoea sp. At-9b plasmid pPAT9B05, complete sequence) position: , mismatch: 9, identity: 0.743

gacttaaggccgtcatggcagaccgggatgtaaat	CRISPR spacer
acccgaaggccgtcacggcagaccggcatgtggac	Protospacer
. *. **********.********** ****..*.

71. spacer 21.1|3599716|34|NZ_CP011304|CRISPRCasFinder matches to MN693599 (Marine virus AFVG_25M122, complete genome) position: , mismatch: 10, identity: 0.706

tgaatattggattgttgaggggtaattatggctg	CRISPR spacer
gaaactttggattgatgaggggttattatgtggc	Protospacer
 .**. ******** ******** ******

72. spacer 21.1|3599716|34|NZ_CP011304|CRISPRCasFinder matches to MN693251 (Marine virus AFVG_25M125, complete genome) position: , mismatch: 10, identity: 0.706

tgaatattggattgttgaggggtaattatggctg	CRISPR spacer
gaaactttggattgatgaggggttattatgtggc	Protospacer
 .**. ******** ******** ******

73. spacer 21.1|3599716|34|NZ_CP011304|CRISPRCasFinder matches to MN693438 (Marine virus AFVG_25M124, complete genome) position: , mismatch: 10, identity: 0.706

tgaatattggattgttgaggggtaattatggctg	CRISPR spacer
gaaactttggattgatgaggggttattatgtggc	Protospacer
 .**. ******** ******** ******

74. spacer 22.34|3603710|34|NZ_CP011304|CRISPRCasFinder,CRT matches to KX190834 (Bacillus phage BMBtpLA3, complete genome) position: , mismatch: 10, identity: 0.706

tcaggatcaaaagaattgggattaagatgtaaaa	CRISPR spacer
ccaggatcaaaagagtttggattaaaagacgtta	Protospacer
.*************.** *******.* ...  *

75. spacer 22.34|3603710|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NC_011645 (Bacillus phage TP21-L, complete genome) position: , mismatch: 10, identity: 0.706

tcaggatcaaaagaattgggattaagatgtaaaa	CRISPR spacer
ccaggatcaaaagagtttggattaaaagacgtta	Protospacer
.*************.** *******.* ...  *

76. spacer 22.34|3603710|34|NZ_CP011304|CRISPRCasFinder,CRT matches to KF296717 (Bacillus phage proCM3, complete genome) position: , mismatch: 10, identity: 0.706

tcaggatcaaaagaattgggattaagatgtaaaa	CRISPR spacer
ccaggatcaaaagagtttggattaaaagacgtca	Protospacer
.*************.** *******.* ...  *

77. spacer 22.34|3603710|34|NZ_CP011304|CRISPRCasFinder,CRT matches to JX887877 (Bacillus phage vB_BtS_BMBtp2, complete genome) position: , mismatch: 10, identity: 0.706

tcaggatcaaaagaattgggattaagatgtaaaa	CRISPR spacer
ccaggatcaaaagagtttggattaaaagacgtca	Protospacer
.*************.** *******.* ...  *

78. spacer 22.34|3603710|34|NZ_CP011304|CRISPRCasFinder,CRT matches to MT136606 (Bacillus phage vB_BceS_KLEB30-3S, complete genome) position: , mismatch: 10, identity: 0.706

tcaggatcaaaagaattgggattaagatgtaaaa	CRISPR spacer
ccaggatcaaaagagtttggattaaaagacgtta	Protospacer
.*************.** *******.* ...  *

79. spacer 22.41|3604212|34|NZ_CP011304|CRISPRCasFinder,CRT matches to NC_013940 (Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence) position: , mismatch: 10, identity: 0.706

agtacaaataaaagattatgtaacttttattagt	CRISPR spacer
gtcttatataaaaggttatttaacttttattttt	Protospacer
. . .* *******.**** ***********  *

80. spacer 22.50|3604859|34|NZ_CP011304|CRISPRCasFinder,CRT matches to MN693898 (Marine virus AFVG_250M937, complete genome) position: , mismatch: 10, identity: 0.706

gaaaaagaatttgagagaaataagagaagatttg	CRISPR spacer
aaaaaagaattagagagaaagaagaagttctata	Protospacer
.********** ******** ****..   * *.

81. spacer 22.50|3604859|34|NZ_CP011304|CRISPRCasFinder,CRT matches to MN694171 (Marine virus AFVG_250M572, complete genome) position: , mismatch: 10, identity: 0.706

gaaaaagaatttgagagaaataagagaagatttg	CRISPR spacer
aaaaaagaattagagagaaagaagaagttctata	Protospacer
.********** ******** ****..   * *.

82. spacer 22.50|3604859|34|NZ_CP011304|CRISPRCasFinder,CRT matches to MN693979 (Marine virus AFVG_250M571, complete genome) position: , mismatch: 10, identity: 0.706

gaaaaagaatttgagagaaataagagaagatttg	CRISPR spacer
aaaaaagaattagagagaaagaagaagttctata	Protospacer
.********** ******** ****..   * *.

83. spacer 22.58|3605432|34|NZ_CP011304|CRISPRCasFinder,CRT,PILER-CR matches to MH271308 (Microbacterium phage Percival, complete genome) position: , mismatch: 11, identity: 0.676

ccccccttccccctccggcccgaccggcgatcga	CRISPR spacer
gtatctggacccctccagcccgaccggcgagcgt	Protospacer
 . .*.   *******.************* **

84. spacer 22.64|3605859|36|NZ_CP011304|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025929 (Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence) position: , mismatch: 11, identity: 0.694

tcgaaaaagaatttgagagaaataaaagaagatttg	CRISPR spacer
atggtcaaaaattcgagagaaataaaagaagaagaa	Protospacer
 .*.  **.****.******************   .

85. spacer 24.2|3610785|34|NZ_CP011304|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039925 (Agrobacterium tumefaciens strain CFBP7129 plasmid pAtCFBP7129b, complete sequence) position: , mismatch: 11, identity: 0.676

actcgctaaagtctttggggggagatgtagaaat	CRISPR spacer
ttggtctaaagtctttggggggcgaggtattcag	Protospacer
 .   ***************** ** ***   *

86. spacer 22.56|3605288|35|NZ_CP011304|CRISPRCasFinder,CRT,PILER-CR matches to LC547238 (Entercoccus phage phiM1EF2 DNA, nearly complete genome) position: , mismatch: 12, identity: 0.657

tttattagattttttttgtgctatcatagtagaat	CRISPR spacer
acaggcgtcttttttttgtgctataatagaagaaa	Protospacer
 . . ..  *************** **** ****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1233273 : 1304573

Tupanvirus(27.27%)

protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071846423.1\|1233273_1233498_+\|transposase	DDE transposase family protein	NA	NA	NA	NA
WP_046661383.1\|1234129_1235593_+	DUF697 domain-containing protein	NA	NA	NA	NA
WP_002737690.1\|1235840_1236137_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_002737442.1\|1236121_1236310_-	hypothetical protein	NA	NA	NA	NA
WP_046663617.1\|1236664_1237357_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_046661384.1\|1237744_1238488_+	anti-sigma factor	NA	NA	NA	NA
WP_046661385.1\|1238574_1239495_-	hypothetical protein	NA	NA	NA	NA
WP_046661386.1\|1239571_1240375_-	type 1 glutamine amidotransferase	NA	NA	NA	NA
WP_002776995.1\|1240538_1241876_-	Mur ligase family protein	NA	NA	NA	NA
WP_046661387.1\|1242039_1243230_+\|protease	trypsin-like serine protease	A0A1B1IT49	uncultured_Mediterranean_phage	1.4e-22	28.3
WP_046661388.1\|1243306_1244455_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_002732983.1\|1244521_1244833_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA
WP_008203498.1\|1244852_1245449_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA
WP_002733194.1\|1245594_1246167_-	NAD(P)H-quinone oxidoreductase subunit I	A0A0C5AMV0	Cyanophage	6.3e-66	74.7
WP_002753735.1\|1246209_1247328_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA
WP_080949716.1\|1247739_1248429_-	orotate phosphoribosyltransferase	Q58MW1	Prochlorococcus_phage	3.4e-34	47.8
WP_046661390.1\|1248482_1248935_+	hypothetical protein	NA	NA	NA	NA
WP_046661391.1\|1249049_1251044_-	ABC transporter ATP-binding protein/permease	NA	NA	NA	NA
WP_046661392.1\|1251900_1256373_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	7.1e-104	28.5
WP_046661393.1\|1256454_1257231_-	SDR family oxidoreductase	M1NMS3	Moumouvirus	1.8e-07	33.9
WP_046661394.1\|1257286_1260565_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	2.2e-70	30.5
WP_046661395.1\|1260656_1261601_-	AerL protein	NA	NA	NA	NA
WP_002796359.1\|1261632_1262433_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_046661396.1\|1262481_1263108_-	cupin domain-containing protein	NA	NA	NA	NA
WP_046661398.1\|1263204_1263837_-	bacilysin biosynthesis protein BacA	NA	NA	NA	NA
WP_046661399.1\|1263830_1264874_-	type 2 isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA
WP_046661401.1\|1264913_1269686_-	non-ribosomal peptide synthetase	A0A2K9L3I8	Tupanvirus	9.8e-112	29.7
WP_046661403.1\|1269809_1271687_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_046661405.1\|1271931_1276191_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_046661408.1\|1277179_1277965_+	SWIM Zn-finger protein	NA	NA	NA	NA
WP_046661409.1\|1278230_1280867_-	type I DNA topoisomerase	A0A1V0SCS0	Indivirus	2.6e-114	34.5
WP_046661410.1\|1281201_1281816_+	DUF938 domain-containing protein	NA	NA	NA	NA
WP_046661411.1\|1282129_1283185_-	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_046661412.1\|1283432_1286057_+	glycosyltransferase family 41 protein	NA	NA	NA	NA
WP_046661413.1\|1286147_1287221_-	TIGR00303 family protein	NA	NA	NA	NA
WP_002738349.1\|1287248_1287659_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_002739069.1\|1287646_1287880_-	hypothetical protein	NA	NA	NA	NA
WP_046661414.1\|1288078_1288957_+	ABC transporter permease	NA	NA	NA	NA
WP_008203477.1\|1289002_1289365_+	thioredoxin	A0A1J0GW78	Streptomyces_phage	1.1e-10	33.0
WP_046661415.1\|1289381_1290560_+	LL-diaminopimelate aminotransferase	NA	NA	NA	NA
WP_046661416.1\|1290540_1290729_+	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_046661418.1\|1291035_1291827_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_046661419.1\|1291819_1292068_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_046661420.1\|1292090_1292870_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_046661421.1\|1293110_1293833_+	hypothetical protein	NA	NA	NA	NA
WP_046661422.1\|1294230_1295052_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_046661423.1\|1295203_1296034_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_046661424.1\|1296603_1297416_-	FkbM family methyltransferase	F2Y1T8	Organic_Lake_phycodnavirus	1.9e-07	25.6
WP_046661425.1\|1297438_1298437_-	glycosyltransferase family 8 protein	NA	NA	NA	NA
WP_046661426.1\|1299185_1300139_-	asparaginase	NA	NA	NA	NA
WP_002763155.1\|1300154_1300658_-	CGLD27 family protein	NA	NA	NA	NA
WP_046661427.1\|1300663_1301068_-	ribosome silencing factor	NA	NA	NA	NA
WP_046661428.1\|1301123_1301720_-	HD domain-containing protein	NA	NA	NA	NA
WP_046661429.1\|1301800_1303369_-	DUF697 domain-containing protein	NA	NA	NA	NA
WP_046661430.1\|1303460_1304573_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0R8V9X2	Thermobifida_phage	1.2e-121	59.3

DBSCAN-SWA_2

1768793 : 1815343

Acanthocystis_turfacea_Chlorella_virus(14.29%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046661787.1\|1768793_1769330_-\|protease	aspartyl protease	NA	NA	NA	NA
WP_002798810.1\|1769413_1769755_-	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_046661788.1\|1769936_1771463_+	YifB family Mg chelatase-like AAA ATPase	NA	NA	NA	NA
WP_046661789.1\|1771755_1773057_-	hypothetical protein	NA	NA	NA	NA
WP_002740194.1\|1773255_1773684_+	hypothetical protein	NA	NA	NA	NA
WP_002793040.1\|1773705_1774290_-	pseudouridine synthase	NA	NA	NA	NA
WP_046661790.1\|1774449_1775238_-	ABC transporter permease	NA	NA	NA	NA
WP_046660474.1\|1775605_1777102_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_046661791.1\|1777852_1779979_+	protein kinase	M1HGF9	Acanthocystis_turfacea_Chlorella_virus	1.0e-07	22.7
WP_002777883.1\|1780154_1780553_-	hypothetical protein	NA	NA	NA	NA
WP_046661792.1\|1780573_1780786_-	hypothetical protein	NA	NA	NA	NA
WP_071846437.1\|1781099_1781240_+	DUF2191 domain-containing protein	NA	NA	NA	NA
WP_002803695.1\|1781309_1783220_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA
WP_046661793.1\|1783627_1784398_-	nickel pincer cofactor biosynthesis protein LarB	A0A288TYA6	Enterococcus_phage	1.9e-20	45.2
WP_046661794.1\|1784572_1786321_-	ribonuclease J	NA	NA	NA	NA
WP_002803691.1\|1786563_1787457_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_046661796.1\|1787731_1788769_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_046661798.1\|1789093_1790491_+	trigger factor	NA	NA	NA	NA
WP_002797385.1\|1790782_1791484_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	2.9e-52	57.1
WP_046661801.1\|1791494_1792829_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	3.0e-135	55.9
WP_004160464.1\|1792850_1793060_+	hypothetical protein	NA	NA	NA	NA
WP_046661802.1\|1793037_1793895_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_103672700.1\|1793910_1794135_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_071846438.1\|1795074_1795851_-\|transposase	IS5/IS1182 family transposase	NA	NA	NA	NA
WP_046661804.1\|1796110_1796305_-	hypothetical protein	NA	NA	NA	NA
WP_046663662.1\|1796648_1799363_+	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	1.8e-54	32.3
WP_046661805.1\|1799396_1801091_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_046661806.1\|1801170_1801908_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_046661807.1\|1802011_1802197_-	hypothetical protein	NA	NA	NA	NA
WP_002738203.1\|1802641_1803004_+	hypothetical protein	NA	NA	NA	NA
WP_002737941.1\|1802963_1803254_+	hypothetical protein	NA	NA	NA	NA
WP_046661808.1\|1803407_1804511_-	hypothetical protein	NA	NA	NA	NA
WP_046661809.1\|1804535_1805705_-	aminoglycoside phosphotransferase family protein	NA	NA	NA	NA
WP_046661810.1\|1806376_1807327_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_046661811.1\|1807599_1808331_+	glutathione peroxidase	A0A1D8KSL1	Synechococcus_phage	2.7e-45	54.9
WP_046661812.1\|1808544_1809078_+	DNA starvation/stationary phase protection protein Dps	NA	NA	NA	NA
WP_046663665.1\|1809121_1810405_-	protein kinase	NA	NA	NA	NA
WP_002731861.1\|1811017_1811203_-	hypothetical protein	NA	NA	NA	NA
WP_103672701.1\|1811479_1811713_-\|transposase	transposase	NA	NA	NA	NA
WP_046661813.1\|1812243_1814061_-	DUF4101 domain-containing protein	A0A2H4UVE2	Bodo_saltans_virus	1.8e-13	26.7
WP_046661814.1\|1814560_1815343_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1823836 : 1879601

Clostridium_phage(16.67%)

protease,transposase,integrase

attL 1866434:1866493|attR 1884934:1885133

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046661821.1\|1823836_1825171_-\|transposase	transposase	A0A191SB13	Nostoc_phage	1.3e-101	50.9
WP_046661822.1\|1825475_1826030_-	guanylate kinase	A0A143DIC6	Abalone_herpesvirus	1.4e-22	36.6
WP_002737924.1\|1826042_1826312_-	DUF370 domain-containing protein	NA	NA	NA	NA
WP_004268575.1\|1826819_1827026_+	hypothetical protein	NA	NA	NA	NA
WP_046661823.1\|1827154_1827640_+	cytochrome c-550	NA	NA	NA	NA
WP_002762377.1\|1827692_1828394_-	hypothetical protein	NA	NA	NA	NA
WP_046661824.1\|1828386_1829481_-	ATP-binding protein	NA	NA	NA	NA
WP_046661825.1\|1829661_1831167_+	UbiD family decarboxylase	NA	NA	NA	NA
WP_002737633.1\|1831757_1832306_+	50S ribosomal protein L10	NA	NA	NA	NA
WP_016515259.1\|1832349_1832742_+	50S ribosomal protein L7/L12	NA	NA	NA	NA
WP_012267019.1\|1832846_1832942_+	photosystem II reaction center protein T	NA	NA	NA	NA
WP_046661826.1\|1833069_1833585_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_002737013.1\|1833817_1834810_+	30S ribosomal protein S1	NA	NA	NA	NA
WP_046661827.1\|1834948_1835983_-	adenylate/guanylate cyclase domain-containing protein	NA	NA	NA	NA
WP_046661828.1\|1836034_1836736_-	DUF3120 domain-containing protein	NA	NA	NA	NA
WP_046661829.1\|1836897_1837566_+	hypothetical protein	NA	NA	NA	NA
WP_046661830.1\|1837562_1837997_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA
WP_046661831.1\|1838013_1838529_-	TIGR02652 family protein	NA	NA	NA	NA
WP_046661832.1\|1838637_1839189_+	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_002747397.1\|1839254_1839374_+	photosystem II protein Y	NA	NA	NA	NA
WP_046661833.1\|1839566_1840901_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_045357973.1\|1841217_1842513_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	3.7e-21	33.8
WP_002781634.1\|1842585_1842918_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_046663667.1\|1843460_1844036_+	hypothetical protein	NA	NA	NA	NA
WP_080949730.1\|1844517_1845480_+\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_046661835.1\|1845543_1846071_-	hypothetical protein	NA	NA	NA	NA
WP_046661836.1\|1846197_1846500_-	HigA family addiction module antidote protein	R9U9N7	Vibrio_phage	6.6e-06	37.7
WP_046661837.1\|1846582_1847398_-	hypothetical protein	NA	NA	NA	NA
WP_046661838.1\|1847792_1848494_-	DUF4276 family protein	NA	NA	NA	NA
WP_046661839.1\|1848504_1849929_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	5.9e-12	24.8
WP_002781641.1\|1850331_1850862_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	3.2e-11	31.1
WP_046661840.1\|1851207_1851501_-	(2Fe-2S) ferredoxin domain-containing protein	NA	NA	NA	NA
WP_080949731.1\|1851686_1852388_+	hypothetical protein	NA	NA	NA	NA
WP_046661842.1\|1852476_1852818_+	thioredoxin fold domain-containing protein	A0A1J0GW78	Streptomyces_phage	5.9e-11	39.5
WP_046661843.1\|1853081_1853738_+	VWA domain-containing protein	NA	NA	NA	NA
WP_046661844.1\|1853751_1854510_+	protein phosphatase 2C domain-containing protein	NA	NA	NA	NA
WP_046661845.1\|1854599_1854911_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_002783562.1\|1855091_1855325_+	hypothetical protein	NA	NA	NA	NA
WP_046661846.1\|1855539_1857522_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A7H6	Microcystis_virus	1.2e-66	51.8
WP_046661847.1\|1857891_1858644_-	TVP38/TMEM64 family protein	NA	NA	NA	NA
WP_046661848.1\|1858908_1860294_+	cytochrome P450	A0A0B5IYC9	Pandoravirus	2.0e-12	25.2
WP_046661849.1\|1860379_1861363_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA
WP_012265437.1\|1861406_1861865_+	DUF29 domain-containing protein	NA	NA	NA	NA
WP_008201831.1\|1861881_1862346_+	DUF29 domain-containing protein	NA	NA	NA	NA
WP_046661850.1\|1862660_1862924_-	hypothetical protein	NA	NA	NA	NA
WP_052734171.1\|1862922_1863432_+	ricin-type beta-trefoil lectin domain protein	NA	NA	NA	NA
WP_046661851.1\|1863659_1864106_+	PIN domain-containing protein	NA	NA	NA	NA
WP_046661852.1\|1864092_1864305_+	hypothetical protein	NA	NA	NA	NA
WP_046661853.1\|1864827_1865070_+	DUF433 domain-containing protein	NA	NA	NA	NA
WP_046663670.1\|1865153_1865537_+	DUF433 domain-containing protein	NA	NA	NA	NA
WP_046661854.1\|1865515_1865899_+	hypothetical protein	NA	NA	NA	NA
WP_103672714.1\|1865914_1866608_+\|transposase	IS1 family transposase	NA	NA	NA	NA
1866434:1866493	attL	NA	NA	NA	NA
WP_080949805.1\|1867138_1867447_-	ASCH domain-containing protein	A0A068CCC0	Rhizobium_phage	3.3e-05	46.7
WP_046661856.1\|1868787_1869750_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_046661857.1\|1870804_1873825_-	hypothetical protein	NA	NA	NA	NA
WP_046661858.1\|1873984_1876219_-\|protease	M6 family metalloprotease domain-containing protein	A0A1L2BY89	Clostridium_phage	2.8e-154	52.9
WP_046661859.1\|1876290_1876614_-	hypothetical protein	A0A1L2BY89	Clostridium_phage	3.1e-17	50.0
WP_046660511.1\|1878611_1879601_-\|transposase	transposase	NA	NA	NA	NA
1884934:1885133	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3493474 : 3547004

Bacteriophage(12.5%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046662984.1\|3493474_3494689_-\|transposase	transposase	A0A1L2BWU7	Bacteriophage	2.6e-69	41.1
WP_071846485.1\|3494739_3495171_+\|transposase	IS200/IS605 family transposase	A0A7E6	Microcystis_virus	1.2e-29	49.6
WP_046662986.1\|3495215_3496310_-	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA
WP_046662987.1\|3496460_3496799_-	rhodanese-related sulfurtransferase	NA	NA	NA	NA
WP_002782697.1\|3497008_3497236_+	hypothetical protein	NA	NA	NA	NA
WP_046662988.1\|3497235_3497685_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_046662989.1\|3497908_3500932_+	exonuclease subunit SbcC	G3MAB6	Bacillus_virus	2.3e-21	31.4
WP_046662990.1\|3500951_3501206_+	MoaD/ThiS family protein	NA	NA	NA	NA
WP_046662991.1\|3501275_3503558_+	single-stranded-DNA-specific exonuclease RecJ	A0A1W6JL19	Lactococcus_phage	2.2e-29	28.1
WP_002782691.1\|3503613_3504561_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_046662992.1\|3504735_3505725_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_046662993.1\|3505862_3506153_+	nucleotidyltransferase	NA	NA	NA	NA
WP_046662994.1\|3506142_3506496_+	DUF86 domain-containing protein	NA	NA	NA	NA
WP_046662995.1\|3506707_3506977_-	50S ribosomal protein L27	NA	NA	NA	NA
WP_046662996.1\|3507011_3507401_-	50S ribosomal protein L21	NA	NA	NA	NA
WP_008196984.1\|3507596_3508517_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_046662997.1\|3508544_3510035_+\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_002800640.1\|3510214_3510613_+	DUF4164 domain-containing protein	NA	NA	NA	NA
WP_046662998.1\|3510722_3511301_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_052734193.1\|3511395_3511818_+	hypothetical protein	NA	NA	NA	NA
WP_012264300.1\|3511887_3512346_+	50S ribosomal protein L9	NA	NA	NA	NA
WP_046663000.1\|3512445_3513030_+	chorismate-binding protein	C7BVI4	Synechococcus_phage	7.0e-20	35.3
WP_046663001.1\|3513052_3513853_+	exodeoxyribonuclease III	NA	NA	NA	NA
WP_046663002.1\|3513991_3514546_+	hypothetical protein	NA	NA	NA	NA
WP_002782546.1\|3514546_3514864_-	hypothetical protein	NA	NA	NA	NA
WP_002763623.1\|3514983_3515877_-	beta-carotene hydroxylase	NA	NA	NA	NA
WP_046663003.1\|3516040_3516460_-	transcriptional regulator	A0A222YXG1	Escherichia_phage	1.3e-07	34.4
WP_046663004.1\|3516443_3516743_-	type II toxin-antitoxin system HigB family toxin	F5A3A2	Riemerella_phage	8.0e-12	36.8
WP_046663005.1\|3517143_3517701_+	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_046663006.1\|3517964_3518264_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_002738003.1\|3518256_3518628_+	DUF86 domain-containing protein	NA	NA	NA	NA
WP_046663007.1\|3519104_3523679_+	glutamate synthase large subunit	NA	NA	NA	NA
WP_046663008.1\|3523770_3524124_-	hypothetical protein	NA	NA	NA	NA
WP_002748889.1\|3524815_3525040_+	hypothetical protein	NA	NA	NA	NA
WP_002748891.1\|3525029_3525452_+	putative toxin-antitoxin system toxin component, PIN family	NA	NA	NA	NA
WP_066030092.1\|3525512_3525773_+	hypothetical protein	NA	NA	NA	NA
WP_046663009.1\|3525841_3526177_+	hypothetical protein	NA	NA	NA	NA
WP_046663010.1\|3526173_3526590_+	PIN domain-containing protein	NA	NA	NA	NA
WP_071846486.1\|3526706_3527255_-	HEAT repeat domain-containing protein	NA	NA	NA	NA
WP_002754005.1\|3529622_3529967_-	hypothetical protein	NA	NA	NA	NA
WP_046663011.1\|3530158_3530893_-	D-alanyl-D-alanine carboxypeptidase family protein	NA	NA	NA	NA
WP_046663012.1\|3530924_3532316_-	NAD-dependent malic enzyme	NA	NA	NA	NA
WP_046663013.1\|3532514_3533465_+	prolyl aminopeptidase	NA	NA	NA	NA
WP_080949779.1\|3535204_3536155_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	1.0e-20	29.2
WP_046663015.1\|3537112_3538126_-	hypothetical protein	NA	NA	NA	NA
WP_046663016.1\|3538375_3539308_+	ATP-binding protein	NA	NA	NA	NA
WP_046663017.1\|3539536_3540589_+	metal-dependent hydrolase	NA	NA	NA	NA
WP_046663018.1\|3540581_3541676_+	ATP-binding protein	NA	NA	NA	NA
WP_046663019.1\|3541668_3543291_+	hypothetical protein	NA	NA	NA	NA
WP_046663827.1\|3543568_3543889_+	TolC family protein	NA	NA	NA	NA
WP_103672714.1\|3544011_3544705_+\|transposase	IS1 family transposase	NA	NA	NA	NA
WP_103672744.1\|3544769_3545093_+	type II toxin-antitoxin system PrlF family antitoxin	NA	NA	NA	NA
WP_046660474.1\|3545507_3547004_+\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

3598665 : 3670279

Bodo_saltans_virus(14.29%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_103672725.1\|3598665_3599557_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	9.7e-21	29.2
WP_046661002.1\|3599881_3601108_-\|transposase	ISL3 family transposase	A9YX10	Burkholderia_phage	1.6e-26	26.8
WP_046660896.1\|3607003_3608152_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_046660474.1\|3609111_3610608_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_046663050.1\|3612814_3613087_-	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA
WP_046663051.1\|3613099_3614104_-	type I-D CRISPR-associated endonuclease Cas1	NA	NA	NA	NA
WP_046663052.1\|3614109_3614703_-	CRISPR-associated protein Cas4	NA	NA	NA	NA
WP_046663053.1\|3614705_3615539_-	CRISPR-associated endoribonuclease Cas6	NA	NA	NA	NA
WP_046663054.1\|3615538_3616105_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_046663055.1\|3616145_3618881_-	CRISPR-associated helicase Cas3'	NA	NA	NA	NA
WP_046663056.1\|3618873_3619698_-	hypothetical protein	NA	NA	NA	NA
WP_012266052.1\|3619701_3620595_-	hypothetical protein	NA	NA	NA	NA
WP_046663057.1\|3620597_3623129_-	hypothetical protein	NA	NA	NA	NA
WP_158524813.1\|3623216_3623360_-	hypothetical protein	NA	NA	NA	NA
WP_046663059.1\|3623893_3624751_+	WYL domain-containing protein	NA	NA	NA	NA
WP_008197426.1\|3625956_3626340_+	DUF4346 domain-containing protein	NA	NA	NA	NA
WP_046663062.1\|3626625_3627489_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_046663063.1\|3627759_3628269_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_046663064.1\|3628265_3629393_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_046663065.1\|3629528_3630467_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_046663066.1\|3632348_3634340_+	GAF domain-containing protein	A0A1V0SGX0	Hokovirus	8.8e-22	31.2
WP_046663067.1\|3634610_3635816_+	argininosuccinate synthase	NA	NA	NA	NA
WP_002793145.1\|3636414_3636756_+	XisI protein	NA	NA	NA	NA
WP_008197417.1\|3636905_3637292_+	hypothetical protein	NA	NA	NA	NA
WP_046663069.1\|3637764_3638460_+	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_002760368.1\|3638556_3638772_+	hypothetical protein	NA	NA	NA	NA
WP_002780565.1\|3638772_3639033_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_046663070.1\|3639248_3640058_+	ATP-dependent sacrificial sulfur transferase LarE	NA	NA	NA	NA
WP_103672896.1\|3640163_3641302_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_046663073.1\|3641453_3641990_+	hypothetical protein	NA	NA	NA	NA
WP_046663074.1\|3641934_3643662_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA
WP_046663075.1\|3643737_3644067_-	HigA family addiction module antidote protein	G4KKP7	Yersinia_phage	2.5e-06	41.7
WP_046663076.1\|3644082_3644382_-	plasmid maintenance system killer protein	NA	NA	NA	NA
WP_046663077.1\|3644505_3645156_-	hypothetical protein	NA	NA	NA	NA
WP_046663078.1\|3645310_3646591_-\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_046663079.1\|3646611_3648522_-	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.1e-125	42.3
WP_008198193.1\|3651643_3651850_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_046663080.1\|3651852_3652080_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_046663081.1\|3654793_3657934_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_046663082.1\|3657937_3658477_+	hypothetical protein	NA	NA	NA	NA
WP_004163806.1\|3658484_3658793_+	hypothetical protein	NA	NA	NA	NA
WP_002760333.1\|3659147_3659924_-	enoyl-ACP reductase FabI	NA	NA	NA	NA
WP_046663083.1\|3660138_3660816_+	global nitrogen regulator NtcA	NA	NA	NA	NA
WP_046663084.1\|3660823_3662311_+	DUF3084 domain-containing protein	NA	NA	NA	NA
WP_046663085.1\|3662324_3662909_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_046663086.1\|3662955_3664200_-	ATP-binding protein	NA	NA	NA	NA
WP_046663087.1\|3664578_3665901_-	serine/threonine protein kinase	S4W2F5	Pandoravirus	2.3e-10	29.8
WP_046663088.1\|3665957_3666851_-	aspartoacylase	NA	NA	NA	NA
WP_046663089.1\|3667142_3668129_-	c-type cytochrome biogenesis protein CcsB	NA	NA	NA	NA
WP_046663090.1\|3668314_3670279_+\|protease	ATP-dependent zinc metalloprotease FtsH	A0A0P0CCN8	Ostreococcus_mediterraneus_virus	9.3e-101	46.9

DBSCAN-SWA_6

4207777 : 4271242

Staphylococcus_phage(11.76%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046663482.1\|4207777_4209022_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0R8V9X2	Thermobifida_phage	6.2e-74	44.2
WP_046663483.1\|4209532_4210018_+	hypothetical protein	NA	NA	NA	NA
WP_046663484.1\|4210091_4211465_+	YvcK family protein	A1IMD5	Streptococcus_phage	3.5e-46	35.5
WP_046663485.1\|4211990_4212281_-	DUF2288 family protein	NA	NA	NA	NA
WP_046663486.1\|4212416_4212989_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_046663487.1\|4213020_4214304_+	ABC exporter membrane fusion protein	NA	NA	NA	NA
WP_046663488.1\|4214311_4215484_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_046663489.1\|4215502_4216222_+	DevA family ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.4e-84	68.3
WP_046663490.1\|4216578_4218501_-	penicillin-binding protein 2	NA	NA	NA	NA
WP_046663491.1\|4218923_4219358_+	hypothetical protein	NA	NA	NA	NA
WP_046663492.1\|4219354_4219768_-	SnoaL-like domain-containing protein	NA	NA	NA	NA
WP_046663493.1\|4219823_4220933_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	A0A0K0KVL7	Prochlorococcus_phage	3.7e-30	27.2
WP_046663494.1\|4221400_4222033_+	restriction endonuclease subunit R	NA	NA	NA	NA
WP_046663495.1\|4222276_4223407_+	SpoIID/LytB domain-containing protein	NA	NA	NA	NA
WP_046663496.1\|4223545_4227109_+	methionine synthase	NA	NA	NA	NA
WP_046663497.1\|4227679_4228279_+	DnaJ domain-containing protein	NA	NA	NA	NA
WP_046663498.1\|4228281_4229283_+	hypothetical protein	NA	NA	NA	NA
WP_002749933.1\|4229515_4230574_+	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_046663499.1\|4230631_4231375_-	hypothetical protein	NA	NA	NA	NA
WP_046663500.1\|4231441_4233118_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase RibB/GTP cyclohydrolase II RibA	A0A2H4PQS2	Staphylococcus_phage	3.0e-100	47.7
WP_002736362.1\|4233255_4234134_-	photosystem I reaction center subunit XII	NA	NA	NA	NA
WP_046663501.1\|4234402_4234891_-	phycocyanin subunit alpha	NA	NA	NA	NA
WP_002771747.1\|4234957_4235476_-	phycocyanin subunit beta	NA	NA	NA	NA
WP_046663502.1\|4236089_4237313_+	amidohydrolase	NA	NA	NA	NA
WP_046663503.1\|4237391_4238279_+	acetylglutamate kinase	NA	NA	NA	NA
WP_002759020.1\|4238447_4238669_+	DUF4327 family protein	NA	NA	NA	NA
WP_046663504.1\|4238712_4239933_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_046663506.1\|4240356_4240965_+\|transposase	IS607 family transposase	A0A7Q0	Microcystis_virus	4.6e-107	98.5
WP_046663507.1\|4240942_4242115_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A7P9	Microcystis_virus	2.0e-215	97.7
WP_046663508.1\|4242182_4243856_+	DNA methyltransferase	A0A2L1IZ21	Streptomyces_phage	1.1e-123	43.4
WP_046663509.1\|4245017_4245341_+	iron-sulfur cluster assembly accessory protein	NA	NA	NA	NA
WP_046663510.1\|4245341_4246409_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA
WP_002735746.1\|4246454_4246718_-	DUF3134 domain-containing protein	NA	NA	NA	NA
WP_046663511.1\|4246714_4247137_-	8-oxo-dGTP diphosphatase MutT	NA	NA	NA	NA
WP_002760450.1\|4247240_4247564_+	30S ribosomal protein PSRP-3	NA	NA	NA	NA
WP_046663512.1\|4247784_4248201_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA
WP_046663513.1\|4248275_4249724_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
WP_149039042.1\|4250286_4250955_-	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_046663515.1\|4251267_4252893_-	chaperonin GroEL	A0A219YK78	uncultured_virus	7.1e-155	54.7
WP_002737272.1\|4252939_4253251_-	co-chaperone GroES	A0A221S386	uncultured_virus	5.9e-18	53.3
WP_002804204.1\|4254107_4254536_-	hypothetical protein	NA	NA	NA	NA
WP_046663516.1\|4255106_4257428_-	DNA helicase PcrA	A7KV33	Bacillus_phage	4.9e-117	36.9
WP_039899812.1\|4257753_4259004_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	9.7e-120	53.9
WP_046663517.1\|4259549_4260104_-	phycobiliprotein lyase	NA	NA	NA	NA
WP_046663518.1\|4260131_4261115_-	glycosyltransferase family 2 protein	A0A2H5BFL1	Salmonella_phage	4.5e-80	49.2
WP_080949793.1\|4261145_4262363_-	glycosyltransferase	NA	NA	NA	NA
WP_046663519.1\|4262365_4263325_-	GDP-mannose 4,6-dehydratase	A0A0E3F1J3	Synechococcus_phage	1.5e-72	46.6
WP_046663520.1\|4263339_4264260_-	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	6.9e-06	26.7
WP_046663521.1\|4264525_4265509_+	glycosyltransferase family 2 protein	A0A0F7L2F7	uncultured_marine_virus	6.5e-10	28.2
WP_046663522.1\|4265641_4265998_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_046663523.1\|4265984_4266527_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_002759792.1\|4266688_4267015_+	hypothetical protein	NA	NA	NA	NA
WP_002804258.1\|4267011_4267620_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_046663524.1\|4267635_4268895_-\|transposase	transposase	A0A1L2BWU7	Bacteriophage	2.6e-88	46.4
WP_046663525.1\|4269494_4270151_-	endonuclease III	NA	NA	NA	NA
WP_046663526.1\|4270150_4271242_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP011304.1|WP_046661419.1|1291819_1292068_-|helix-turn-helix-domain-containing-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP011304.1|WP_046661419.1|1291819_1292068_-|helix-turn-helix-domain-containing-protein

1291819_1292068_-

82 aa aa

1233273-1304573

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP011304_1	TypeV	1.2\|142777\|18\|NZ_CP011304\|CRISPRCasFinder	142777-142794	18	1282067-1282084	1

1. spacer 1.2|142777|18|NZ_CP011304|CRISPRCasFinder matches to NZ_CP011304 position: 1282067-1282084, mismatch: 1

tccccacttcccactccc	CRISPR spacer
tccccacttcccacttcc	Protospacer
***************.**