CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011133	Citrobacter amalonaticus Y19 plasmid unnamed, complete sequence	0 crisprs	DinG,csa3	0	0	1	0
NZ_CP011132	Citrobacter amalonaticus Y19 chromosome, complete genome	13 crisprs	WYL,DinG,cas3,DEDDh,RT,csa3,PD-DExK	2	1	9	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

178852 : 227411

uncultured_Caudovirales_phage(35.29%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046499206.1\|178852_179278_-	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	9.5e-51	71.4
WP_032409266.1\|179290_180580_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	3.4e-168	71.4
WP_004206577.1\|180624_180945_-	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	2.9e-20	44.8
WP_016151343.1\|181030_181729_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	4.5e-90	69.4
WP_004206574.1\|181857_182163_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004206572.1\|182173_183379_-	chromate efflux transporter	NA	NA	NA	NA
WP_046499216.1\|183554_184133_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	7.9e-24	38.3
WP_046499219.1\|184291_187276_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	3.6e-306	54.5
WP_040133153.1\|190453_191020_-	hypothetical protein	NA	NA	NA	NA
WP_040133152.1\|191016_191412_-	hypothetical protein	NA	NA	NA	NA
WP_011711644.1\|191435_191870_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_020833625.1\|191889_192690_-	EAL domain-containing protein	NA	NA	NA	NA
WP_020833624.1\|192701_194369_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	3.6e-37	28.2
WP_007642843.1\|194406_194826_-	organomercurial transporter MerC	NA	NA	NA	NA
WP_011711647.1\|194829_195105_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_007642845.1\|195160_195508_-	mercury transporter	NA	NA	NA	NA
WP_046499251.1\|195601_195988_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_011711649.1\|197092_198142_+	DNA-binding protein	NA	NA	NA	NA
WP_040133149.1\|198261_198594_+	YnfA family protein	A0A218MNG8	uncultured_virus	9.7e-27	59.8
WP_116967879.1\|198686_199703_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	3.7e-186	99.4
WP_000528119.1\|199811_200015_-	fumarate hydratase FumD	NA	NA	NA	NA
WP_000974596.1\|200107_200692_-	two-component system response regulator TtrR	NA	NA	NA	NA
WP_080950116.1\|200666_202400_-	sensor histidine kinase	NA	NA	NA	NA
WP_077910396.1\|202609_203362_+	tetrathionate reductase subunit TtrB	NA	NA	NA	NA
WP_044864557.1\|203362_204385_+	tetrathionate reductase subunit TtrC	NA	NA	NA	NA
WP_000002334.1\|204377_207443_+	tetrathionate reductase subunit TtrA	A0A077SK27	Escherichia_phage	3.6e-06	26.0
WP_046499266.1\|207537_208350_-	methionine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_155404066.1\|208418_209435_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	1.4e-185	99.1
WP_074091250.1\|209665_210634_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	3.8e-180	96.3
WP_046499267.1\|210786_213864_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	6.2e-51	29.9
WP_046499268.1\|213954_214320_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_046499270.1\|214322_214802_+	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	1.7e-35	48.1
WP_046499272.1\|214814_215183_+	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_046499274.1\|215204_216965_+	arsenical pump-driving ATPase	NA	NA	NA	NA
WP_046499276.1\|216976_217471_+	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	2.7e-25	40.0
WP_046499277.1\|217496_218564_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_046499278.1\|218564_219515_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	5.6e-59	40.9
WP_046499281.1\|219541_220042_+	tyrosine-protein phosphatase	NA	NA	NA	NA
WP_046499284.1\|220133_220703_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_046499287.1\|220769_221516_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_046499290.1\|221512_222427_+	cation transporter	NA	NA	NA	NA
WP_046499295.1\|222492_223089_-	formylmethanofuran dehydrogenase	NA	NA	NA	NA
WP_080950117.1\|223246_223474_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_046499575.1\|223708_224704_+	permease	NA	NA	NA	NA
WP_046499300.1\|224731_224971_+	TM0996/MTH895 family glutaredoxin-like protein	NA	NA	NA	NA
WP_046499302.1\|224983_225349_+	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_046499305.1\|225376_225763_+	DUF2703 domain-containing protein	NA	NA	NA	NA
WP_011977766.1\|225944_226280_+	C2H2-type zinc finger protein	NA	NA	NA	NA
WP_046499309.1\|226430_227411_+\|transposase	IS5 family transposase	Q38213	Escherichia_phage	7.5e-184	97.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP011132

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011132_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011132_1

340616-340713

Orphan

Consensus_repeat	Method
GTTTTTCATGTCACTTTGGTAAAAGGTTCCGTTCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011132_1

>merge|NZ_CP011132|1|340616-340713|CRISPRCasFinder
GTTTTTCATGTCACTTTGGTAAAAGGTTCCGTTCGCTTATGTGTTTCGTACTGGGGGCGGGTGTTTTTCATGTCACTTCGGTAAAAGGTTCCGTTCGC

>NZ_CP011132|1|1|340616-340713|CRISPRCasFinder
GTTTTTCATGTCACTTTGGTAAAAGGTTCCGTTCGC	TTATGTGTTTCGTACTGGGGGCGGGT
GTTTTTCATGTCACTTCGGTAAAAGGTTCCGTTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011132.1\|WP_046476068.1\|344139_344991_+\|taurine-dioxygenase	unknown	unknown	gnl\|CDD\|181947
NZ_CP011132.1\|WP_046497602.1\|351720_352344_+\|hydrogen-peroxide-resistance-inhibitor-IprA	unknown	unknown	gnl\|CDD\|183332
NZ_CP011132.1\|WP_046476053.1\|335904_336936_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270262
NZ_CP011132.1\|WP_046476074.1\|348709_351631_+\|autotransporter-adhesin-EhaB	unknown	unknown	gnl\|CDD\|273608
NZ_CP011132.1\|WP_046476080.1\|353830_354364_+\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238496
NZ_CP011132.1\|WP_046476043.1\|321631_324715_-\|beta-galactosidase	unknown	unknown	gnl\|CDD\|236548
NZ_CP011132.1\|WP_046476057.1\|338321_339863_-\|MASE1-domain-containing-protein	unknown	unknown	gnl\|CDD\|226369
NZ_CP011132.1\|WP_046476066.1\|343315_344143_+\|taurine-ABC-transporter-permease-TauC	unknown	unknown	gnl\|CDD\|182276
NZ_CP011132.1\|WP_052746871.1\|327284_331205_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|237940
NZ_CP011132.1\|WP_046476064.1\|342551_343319_+\|taurine-ABC-transporter-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|183056
NZ_CP011132.1\|WP_046476071.1\|345401_347102_-\|lysophospholipid-acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|153248
NZ_CP011132.1\|WP_046476076.1\|352344_353502_-\|D-alanyl-D-alanine--carboxypeptidase/endopeptidase-AmpH	unknown	unknown	gnl\|CDD\|236732
NZ_CP011132.1\|WP_046476050.1\|333686_335765_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224099
NZ_CP011132.1\|WP_046476054.1\|336932_338237_-\|MFS-transporter-family-glucose-6-phosphate-receptor-UhpC	unknown	unknown	gnl\|CDD\|183266
NZ_CP011132.1\|WP_046476049.1\|332628_333675_-\|ferric-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183133
NZ_CP011132.1\|WP_046476059.1\|339862_340492_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP011132.1\|WP_046476048.1\|325803_326580_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|225130
NZ_CP011132.1\|WP_046476061.1\|341577_342540_+\|taurine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|183158
NZ_CP011132.1\|WP_046497599.1\|347223_348198_-\|porphobilinogen-synthase	unknown	unknown	gnl\|CDD\|236450
NZ_CP011132.1\|WP_046476045.1\|324815_325784_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|181818

Protein	Function_ID	Function_description	E-value
NZ_CP011132.1\|WP_046476068.1\|344139_344991_+\|taurine-dioxygenase	gnl\|CDD\|181947	PRK09553, tauD, taurine dioxygenase; Reviewed.	0
NZ_CP011132.1\|WP_046497602.1\|351720_352344_+\|hydrogen-peroxide-resistance-inhibitor-IprA	gnl\|CDD\|183332	PRK11832, PRK11832, hydrogen peroxide resistance inhibitor IprA.	3.08884e-126
NZ_CP011132.1\|WP_046476053.1\|335904_336936_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270262	cd13544, PBP2_Fbp_like_1, Substrate binding domain of a putative ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The substrate domain of this group shows a high homology to the periplasmic component of ferric iron transporter (Fbp), but its biochemical characterization has not been performed. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.7136e-138
NZ_CP011132.1\|WP_046476074.1\|348709_351631_+\|autotransporter-adhesin-EhaB	gnl\|CDD\|273608	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain. A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	9.72252e-69
NZ_CP011132.1\|WP_046476080.1\|353830_354364_+\|isochorismatase-family-protein	gnl\|CDD\|238496	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.	1.74094e-39
NZ_CP011132.1\|WP_046476043.1\|321631_324715_-\|beta-galactosidase	gnl\|CDD\|236548	PRK09525, lacZ, beta-galactosidase.	0
NZ_CP011132.1\|WP_046476057.1\|338321_339863_-\|MASE1-domain-containing-protein	gnl\|CDD\|226369	COG3851, UhpB, Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms].	0
NZ_CP011132.1\|WP_046476066.1\|343315_344143_+\|taurine-ABC-transporter-permease-TauC	gnl\|CDD\|182276	PRK10160, PRK10160, taurine ABC transporter permease TauC.	6.33461e-169
NZ_CP011132.1\|WP_052746871.1\|327284_331205_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|237940	PRK15313, PRK15313, intestinal colonization autotransporter adhesin MisL.	1.19138e-110
NZ_CP011132.1\|WP_046476064.1\|342551_343319_+\|taurine-ABC-transporter-ATP-binding-subunit	gnl\|CDD\|183056	PRK11248, tauB, taurine ABC transporter ATP-binding subunit.	0
NZ_CP011132.1\|WP_046476071.1\|345401_347102_-\|lysophospholipid-acyltransferase-family-protein	gnl\|CDD\|153248	cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.	1.33242e-67
NZ_CP011132.1\|WP_046476076.1\|352344_353502_-\|D-alanyl-D-alanine--carboxypeptidase/endopeptidase-AmpH	gnl\|CDD\|236732	PRK10662, PRK10662, beta-lactam binding protein AmpH; Provisional.	0
NZ_CP011132.1\|WP_046476050.1\|333686_335765_-\|iron-ABC-transporter-permease	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	1.78604e-130
NZ_CP011132.1\|WP_046476054.1\|336932_338237_-\|MFS-transporter-family-glucose-6-phosphate-receptor-UhpC	gnl\|CDD\|183266	PRK11663, PRK11663, glucose-6-phosphate receptor/MFS transporter UhpC.	0
NZ_CP011132.1\|WP_046476049.1\|332628_333675_-\|ferric-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183133	PRK11432, fbpC, ferric ABC transporter ATP-binding protein.	0
NZ_CP011132.1\|WP_046476059.1\|339862_340492_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	6.22799e-72
NZ_CP011132.1\|WP_046476048.1\|325803_326580_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|225130	COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only].	5.83993e-21
NZ_CP011132.1\|WP_046476061.1\|341577_342540_+\|taurine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|183158	PRK11480, tauA, taurine transporter substrate binding subunit; Provisional.	0
NZ_CP011132.1\|WP_046497599.1\|347223_348198_-\|porphobilinogen-synthase	gnl\|CDD\|236450	PRK09283, PRK09283, porphobilinogen synthase.	0
NZ_CP011132.1\|WP_046476045.1\|324815_325784_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|181818	PRK09393, ftrA, transcriptional activator FtrA; Provisional.	8.36002e-110

>NZ_CP011132.1|WP_046476059.1|339862_340492_-|response-regulator-transcription-factor
MIRVVLVDDHVVVRSGFAQLLSLEEDLDVAGQYSSAAEAWPALLQDDVNVAVMDIAMPDENGLSLLKRLRAQRPQFRAIILSIYDTPTFVQSALDAGASGYLTKRCGPEELVQAVRSVGLGGHYLCADALRALRGGEASSPVLAELTPREREVFDLLIKGDSVKEIAFKLDLSHKTVHVHRANVLGKLNCHSTIELVHFALDHQLLAGH
>NZ_CP011132.1|WP_046476057.1|338321_339863_-|MASE1-domain-containing-protein
MSRNLRHAVISLFIVLAWGTGWLMLWTLGFYLTHNGQQAALFLPHGVYLALLILLSRRYWPALVLPPMLMLLWLHSEQLLNGYILLATPLISVIPASLAQTFWYRFPLYWQRLTLLLATVTAASLLNTALLSPFVKSPAMLLGLASFTGGVLLTPFVYLIFEFLRQQHRYHLLGLDTNNPPLRTSLIIWCSLFFIIGIGTQMVLSPEIERLLLIVVFLPNVVMAWKFGWQGGVLSGLLGSMMITIARQVGIGFSNLVELEIFLATQSLLGIGLGIAISRQQHLAQNLHHYRQRLEAELMARRALAEKLVHTEEDTRKSLARELHDEIGQNITAIQIQSQLVKRAHDPAQAQAAASQINDLARRIHHSTRQLLRQLRPPALDELSFKEALLHLLNEFAFTERGIRCQFDYQLTATPENETVRFTLYRLLQELLNNVCKHAGASEVRIVLRQQGEVLHLDVTDNGVGISADKIAGFGIQGMRERVSALGGELALESRHGTRVSVNLPTNLQQIAF
>NZ_CP011132.1|WP_046476054.1|336932_338237_-|MFS-transporter-family-glucose-6-phosphate-receptor-UhpC
MHAGAATEINQRYRTLRPRLLMCMVIGYAAFYLTRKSVNYVLPALQTDLGLDKSDIGLLGSLFYLTYGLSKFTAGLWHDSHGQRGFMGVGLFATGLLNVVFAFGESLTLLLAVWTLNGFFQGWGWPPCARLLTHWYSRNERGFWWGCWNMSINIGGAIIPLISAFAAHWWGWQAAMLMPGVISMALGVWLTLQLKGTPQEEGLPSVGHWRNDPLELRQEQQSPPMGLWQMLRTTMLKNPMIWLLGVSYVLVYLIRIALNDWGNIWLTESHGVNLLSANATVMLFEVGGLLGALFAGWGSDLLFSGQRAPMILLFTLGLMVSVAALWLAPVHHYALLAVCFFTVGFFVFGPQMLIGLAAVECGHKAAAGSITGFLGLFAYLGAALAGWPLSLVIERYGWSGMFSLLSVVAVLMGLLLMPLLMAGITTTLSQRIKQ
>NZ_CP011132.1|WP_046476053.1|335904_336936_-|ABC-transporter-substrate-binding-protein
MKMTLTSTLIASAVALATLSGAAHAKGRLVVYCSATNEMCEAETKAFGEKYDVKTSFIRNGSGSTLAKVDAEKKNPQADVWYGGTLDPQSQAGEMGLLQPYKSPNLEQVMEKFRDPAKVKGNLSSAVYVGILGFGVNTQRLKEKNLPVPKCWKDLTKPEYKGEIQIADPQSSGTAYTALATFAQLWGEDQAFDYLKQLNANVSQYTKSGIAPARNAARGETAIGIGFLHDYSLEKEQGAPLELISPCEGTGYEIGGVSILKGARNLDNAKLFVDWVLSKDAQELAWKKGKSYQILTNTTAETSPNSLKLDDLKLINYDMDKYGSTDVRKALINKWVSEVKMGK
>NZ_CP011132.1|WP_046476050.1|333686_335765_-|iron-ABC-transporter-permease
MSHTLALHPVKKRDAIFLWVLLGWLAFVLLPSWSLDYGLLESTGDEILEAYGWSQFNISWLWYLLPSLLLVRPFHEARREQRSRHYLDASWAFLCIAFIVISATVEGRGLGYATIVLFVALGAIMTLALTRLEWLGGDRFVIGSLVTIVALIGIFIVWPSIAIFIPMFTNDAGAFAPLAFMNVLSQAHIIQVILNSIALSIAVGVGCTFFGLVLAIYTTRIAQRSAVIGRIFSILPIVTPPFVVGLGVTLMMGRSGYVTELMVEWFGLTNTNWLYGFTGIWLAQVLAFTPMAFMILDGAIKTIHPSLEEASYTLRASRWQTFNGVFVPLLKPALANAFLIVIVQSLADFSNPLVLGGNFDVLATQIYFYITGSQLDYQAASTLGAFLLLFSLLVFCVQYMWIGKRSYVTVSGKSYRGDVQPLPVTLVWSVVAILAIWIAFNALLYGSIFYGSFTVNWGVDYTLTLDNFIKLFGQGMSDGAWPSLLDTLLYAGIAAPITAAFGLLIAWVVVRQQFKGKKTIEFTTMLCFAVPGTVAGVSYILAFNSAPVYLTGTAAIVIISMVMRNVPVGIRAGIAGLGQIDKSLDEASLSLRAGSLRTITHILLPLLRPAILSALIYSFVRAITTVSAIVFLVTPDTRVATAYILNRVEDGEYGVAIAYGSILIVVMLAIIFIFDWLIGEARISRSKAKNQA
>NZ_CP011132.1|WP_046476049.1|332628_333675_-|ferric-ABC-transporter-ATP-binding-protein
MSQKNFVELRNVTKRFGSNTVIDNINLTIPQGQMVTLLGPSGCGKTTILRLVAGLEKPSEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVSRADVKTRVKEALAMVDLEGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMRDKIRELQKQFDITSLYVTHDQSEAFAVSDTVLVMNKGHIMQIGSPQDLYRQPASRFMASFMGDANLFPAHFSEDAVDIYGYRLPRPAHFASQGNGTVGVRPEAITLSDRGEESQRCVIRHVAYMGPQYEVTVEWHGQEILLQVNATRLQPDTGEQYFLEIHPYGMFVLADAG
>NZ_CP011132.1|WP_052746871.1|327284_331205_+|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MQHFNKNRIALLLASVFISSAPATGATIYVDGSFPYTAQSNTGTHGVNGGSEGAGAGYVLSPNLESSAADNSVSVGSGITITGGNGDAGGDGGDGMSGNNATISNSGKIIGGEGSYGVSGIGAGGVGISGTDLSITNSRTGSITGGEGDRYSASGAGISGDRLMITNDGAITGGDGSFGFDGNDGTGGIGGAGISGTDLTIINTYRITGGDGDFSGEGGDAISGSALTITNSGAILGGGGGYGYDGAEGGNAGAGITGSNMVIDNIARGSITGGRGNSGSLGGDAISGSALTITNGGSIVGGEGGYGYGALGGNAGAGISGTGLRITNGGSIVGGEGGFSGGGNGGNAGAGISGSEIILDNLAGGSITGGEGGSGGSNGLGGAGMPTAGGTGILGDNLTITNGGSITGGKGAFAGGDTTSPDGADGGTAISGHNLTISNLAGGTITGGEGHYSGSRNNTNSSSGGNGGVGIFGDSLRINNSGSIVGGKGSYGSNGGADGAGGAAISGSNLAIINNHAITGGAPYRSGGEAGAALSLTGGSNMLTLNTGSTITGDIRLADGATTLQIVSNDATSRAINGNLTVGQAASVTLAEQPIEFSGNASFAEGASLTLGEGVSLKAASLSVGDNASLNANITHWDMQDILLVETTNGITGAFSYNNALVAGMSQPDFAYINAGSRIIQYSLYWNGLDADAHGTFTLDEGRTFDLGVALADNTAHLNPAWDGKSLTKAGEGTLILSAENTYTGSTQISEGMLKTTTANAFANTSGVTVGEEGTLNLNGNSQTVNALDNRGTLLIDDDGVPPSSPLSVMLTGDVTNSGNIILNNSATSAGNTLTINGDYVGNGGNLSLGTVLGGDSSLTDKLVVTGNATGTTYVQVNNENGSGALLHEGIKIIETGSSTADAFVQRGRIVAGSYEYHVKQGTASGSDRNNWYLTSLTDTPDPDDSSDVVDDDRPEPGDSSDVVNDDRPAPGDTSDAVHIYRPEAGSYASNLAAANTLFNTRLQDRQGGSWYTDPATGERHMTNLWLRTSGGRNKSRMSDDQNTSSSNRVVVQVGGALLHGSSNGTDSYQLGVMAGYGKQDNDTHNSVSGYDSRGEVSGYSAGLYGTWYQNAVDKTGLYVDSWVLYNWFDNTVKGDEIADESYKSKGLTASLESGYAFHMGSFTTAGDMESNVYLRPQAQVTWMGVKANDHTEKNGTRVQGQGDNNIQTRLGMRLYVNGKSAAEKGADREFEPFIEANWIHNSKQYGVRMNDTSTSLQGSRNVGEVKVGVEGRLTRDLSVWGNVAQQVGNNGFHDTSGVLGIKYQF
>NZ_CP011132.1|WP_046476048.1|325803_326580_-|MBL-fold-metallo-hydrolase
MNITHIRNATQLITFGGKTFLVDPMLAPQGAYPGFPGTARAGIRNPTVELPCDLNTLLQADALIVTHLHADHWDDVAAKVVPKEKPIYVQNEQDAQTLREQGFSQLTLLTDNTRLGEITLRKTGGQHGSDRLYAIPAMAERMGDACGVVFQHPQEKTLYLVGDTLWRDEVEANMVTFQPDVVVLNAGFAHVIGFGAIIMGAEDVLKTHFVLPDAQIVAIHMEALNHCLLTRTALREYVRDNQIAEFVRVPEDGETLTF
>NZ_CP011132.1|WP_046476045.1|324815_325784_-|helix-turn-helix-domain-containing-protein
MRPVTVAIVAVEDFSPFHFSVPCIMFSEKAAAQKRFEVQICAEVPGVITSAEGFSVTAPLGLEAVTAADIVIVPWWGTTARRPSPSLLNALVQARQNGAQVVGLCLGAFVLGYAGLLDGRRAATHWEFEADFQARFPDAHLDINALYVDDDGIITSAGTAAALDCCLYLIRQRFGSTVANQIARRMIVPPHREGGQAQFIAQPVAKNTQDQRINGLLDYLRQHSHEQHDLDSLAKRVMMSRRTLSRHFMQATGSSVAEWIINERLRRSQELLESTPLPVERIAGEVGFLSPVTWRQHFKSRYGVSPAEWRKTFRGGMNANSE
>NZ_CP011132.1|WP_046476043.1|321631_324715_-|beta-galactosidase
MPLNTDSLAAVLARRDWENPGVTQFNRLEAHPPFASWRDGAEARDNHPSSSVRSLNGAWKFNWFASPEAVPESWRLRDLDDADTIVVPSNWQMHGYDAPIYTNVTYPIPVNPPYVPHENATGCYSLTFTVSDAERCDGQTRIILDGVNSAFHLWCNGRWVGYGQDSRLPSEFDLSEYLVSGENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLNKPATHISDLRITTHLNEDFSRAIFAAEVRMRGEWRDSLRVTVQLWNGDVLTGESTAPFGSEIIDERGAYGDRMTLRLNVGHPSLWSAETPHLYRAVVQLHTADGTLIEAEACDVGFRQVSIENGLLLLNGKPLLIRGANRHEHHPENGQVMDEETMVQDIMLMKQNNFNAVRCSHYPNHPRWYTLCDRYGLYVVDEASIETHGMVPMNRLSDDPTWLPAMSQRVTRMVQRDRNHPSIIIWSLGNESGHGANHDALYRWLKSDDPSRPVQYEGGGADTTATDIICPMYARVDQDQPFPAVPKWSIKKWLSLPGEQRPLILCEYAHAMGNSLGGFAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDDNGNPWSAYGGDFGDTPNDRQFCMNGLVFADRTAHPSLFEAKHAQQFFQFTLLPGAERQIAVTSEYLFRHSDNEILHWSIAQEGNPMAAGEVTLDIAPQGRQVITLPDIAQPDNAGQLWLTVRVVQPQATAWAPAGHVSAWQQWPLEEKLNVIGSPRTSTAPQLSVSDTVFTVTLDKKRWAFCRQQGTLTQYWIGDDAQLLSPLSDQFTRAPLDNDIGVSEATRIDPHAWVERWKAAGHYQLQAVLLQCDANPLADAVLIDTVHAWQYQGETLFISRKTWRIDGHGEMQITVDVDVASGTPHPARIGLTCQLAQVAERVNWLGLGPHENYPDRLSAACFDRWDLSLDEMYTPYVFPSENGLRCGTRELKYGAHVWRGDFQFNLSRYSQQQLMATSHRHLLQPEAGSWLNIDGFHMGVGGDDSWSPSVSPEYQLSAGRYHYRVSWSAA
>NZ_CP011132.1|WP_046476061.1|341577_342540_+|taurine-ABC-transporter-substrate-binding-protein
MARSSRNTLLAALAFLTFQAQAVNVTVAYQTSAEPAKVAQADNTFAKESGATVDWRKFDSGASIVRALASGDVQIGNLGSSPLAVAASQQVPIEVFLLASKLGNSEALVVKKNISKPEDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPPAIIAAWQRGDIDGAYVWAPAVNALEKDGKVLTDSEKVGEWGAPTLDVWVVRKDFAEKYPEVVKAFAKSAIDAQQPYIANPDEWLKQPENISKLSRLSGVPEADVPGLVKGNTYLTPQQQTAELTGPVNKAIIDTAQFLKEQGKVPAVASDYSQYVTDRFVQ
>NZ_CP011132.1|WP_046476064.1|342551_343319_+|taurine-ABC-transporter-ATP-binding-subunit
MLQLSHLYADYGGKPALEDINLTLDSGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSIQLAGKRVDGPGAERGVVFQHEGLLPWRNVQDNVALSLQLAGVGKAQRVSIAQEMLKKVGLEGAGKRFIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWHETGKQVLLITHDIEEAVFMATELVLLSPGPGRVLERLPLTFARRFVAGEASRSIKSDPQFIATREYVLSRVFEQREAFS
>NZ_CP011132.1|WP_046476066.1|343315_344143_+|taurine-ABC-transporter-permease-TauC
MSVVINDKPRQRPLKWRWPFSRQITLSLATLTVILAVWWTVAALQLISPLFLPPPDQVLQKLITIAGPQGFMDATLWQHLAASLTRILLALLAAVAFGIPVGIAMGLSPTLRGILDPIIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWWVILPGALPEILTGLRIGLGVGWSTLVAAELIAATRGLGFMVQSAGEFLATDVVLAGIAVIAIIAFILELGLRALQRRLTPWHGEVQ
>NZ_CP011132.1|WP_046476068.1|344139_344991_+|taurine-dioxygenase
MSERLSITPLGPYIGAQIAGADLTRPLSDNQFEQLYHAVLRHQVVFLREQAITPQQQRALAQRFGDLHIHPVYPHAEGVEEIIVLDTHNDNPPDNDNWHTDVTFIETPPAGAILAAKELPSTGGDTLWTSGIAAYEALSEPFRQLLNGLRAEHDFRKSFQEYKYRKTEEEHQRWREAVAKHPPLLHPVVRTHPVSGKQALFVNEGFTTRIVDVTEKESEALLGFLFAHITKPEFQVRWRWQPNDVAIWDNRVTQHYANADYLPQRRIMHRATILGDKPYFRAG
>NZ_CP011132.1|WP_046476071.1|345401_347102_-|lysophospholipid-acyltransferase-family-protein
MFSLDNVLNDLWPEARTAPWQKKVLQRVLYEKEFQQFAARHRHLKGVDMVEQVLEHLQIRCEIPEHHIENIPENGPLVIIANHPTGALDGLALIYALSRVRRDIKVVTNRLLSHLEPLRSLFIPVDNIQGRTPKSSLQQMDTHLQAGGALVFFPAGEVSRLTPKGIAERRWHSGFIRMAEKYRTPLLPVHIQAYNSPLFYACGLVSSSATLLLLMQQMFRRRGSTLPVSIGQQIAWTQWSASKSSVREQAEKCRAHVIALGKGRPGVFRSESTIAPPENRARLKRELARTECLGRTADGKHIYLWQRNGQEEATILRELGRLREIAFRAVGEGSGKRRDIDRYDDDYLHLILWDEDDLEIVGAYRFIPCAQQLEKQGLEGLYSHSLFDYDERMADIMQHGIELGRSFIQPRYWGRRGLDYLWSGIGAYLARYPQYRYLFGPVSISGGLPPDARDLLVAFYRLWFPPTHPLAVSRQPYPASLPDVLAQFAGNNYGEDLTRLKSLLGNLGCGIPPLYKQYSELCEPGGVQFIDFGSDPDFNHCVDGLVLVDLTYLKANRYQRYIGEHL
>NZ_CP011132.1|WP_046497599.1|347223_348198_-|porphobilinogen-synthase
MTDLIHRPRRLRKSAALRAMFEETTLSLNDLVLPIFVEEELDDYKAIEAMPGVMRIPERHLAREIERIANAGIRSIMTFGISHHTDDTGSDAWKEDGLVARMSRICKQTVPEMIVMSDTCFCEYTSHGHCGVLCEHGVDNDATLANLGKQAVVAAAAGADFIAPSAAMDGQVQAIRQALDAAGFTDTAIMSYSTKFASSFYGPFREAAGTALKGDRKTYQMNPMNRREAIRESLLDEAQGADCLMVKPAGAYLDVLRDIRERTELPLGAYQVSGEYAMIKFAAMAGAIDEEKVVLESLGAIKRAGADLIFSYFALDLAEKQLLR
>NZ_CP011132.1|WP_046476074.1|348709_351631_+|autotransporter-adhesin-EhaB
MHSWKKKLVVSQLALACTLAITSQANASTDISGTTYITFNHYNDATYADGVYYDGYVGWNNYAADSVYNGDIYPVINNATVNGVISTYYLDDGLSTNTNSNSLTIKNSTVHGMITSECMTTECADGRDTGYVYDRLALTVDNSTIDDNYEHYTYNGTYTDGTADTHVVDVYDLGTAITLDQEVDLAISNNSHVAGITLTQGYEWEDIDDNTVSTGVNSGEVFNNTITVTNSTVTSGSWSDEGTAGWFGNNNNASDYSNTLTADDVAISAIANPYADNAMQTTVNLSNSTLMGDVVFSSNFDENFFPDGADSYRDTDTTVDTNGWDGTDRMDVTLNNGSKWVGAAMSVHQVDTDGDGVYDSVAAGTDATATLIDIAANSLWPSSTYGIDNGGTAYDENGHVVGNEVYQSGLFNVTLNGGSEWDTTKTSLIDTLSINSGSVVNVADSSLVSDTIALTGGAALNINEDGHVATDTLTVDNSTVTIADDVAAGWSVGDAALYANTINVTNNGVLDVSNSADYALQTDTLNLTSTTDANGNVNAGVFEIHSNNYVLDADLTNDRTADTTKSNYGYGVIAMNSDGHLTINGNGDAYSADLSEVDNVGDNVAAATGNYKVRIDNATGEGTIADYKDKELIYVNDKNSTATFSAANKADLGAYTYQAQQQGNTVVMEQMELTDYANMALSIPSANTNIWNLEQDTVGTRLTNSRHGLQDNGGAWVSYFGGNFNGDNGTINYDQDVNGIMVGVDTKVDGNNAKWIVGAAAGFAKGDVSDHTGKVDQDSQSAYLYSSARFANNIFVDGSLNYTHFNNDLTANMSDGQYVDGSTSADAWGFGLKLGYDWKVSDAGYVTPYGSVSGLFQSDDGYRLSNDMQVDGQSYDSMRYELGVDAGYTFTYSEDQALTPYFKLAYVYDDANNDADVNGDSIDNGTEGSAVRVGLGTQFSFTKNFSAYTDANYLGGGDVDQNWSANAGVKYTW
>NZ_CP011132.1|WP_046497602.1|351720_352344_+|hydrogen-peroxide-resistance-inhibitor-IprA
MLSLNKPLKEFGQLDKSLSKYGTRFEHIHEKHLIYSTEKNPDTTLVILEGIISLRRNEDILVGIAQAPFIMGLTNGVMKHDVQYDLVSEGKCSGYHLSASQTVAIIEECQLWREAFYWLTWQNRILQQRDRQLIGNNSYEQIRTTLFSMNEWDEGLRSRIGVMNYIHQRTRISRSVVAEVLAALRKGGYIEMSKGKLVRINRLPSDY
>NZ_CP011132.1|WP_046476076.1|352344_353502_-|D-alanyl-D-alanine--carboxypeptidase/endopeptidase-AmpH
MKRSLLFSAALCAASLTSVQAAQPVADPVFASDIVERYADHIFYGSGATGMALVVIDGNQRVFRSFGETRPGNNVRPQLDSVIRIASLTKLMTSEMLVKLLDQGTVKLDDPLSKYAPVGARVPSYEGKPITLVNLATHTSALPREQPGGAAKRPVFVWPTREQRWNYLSTATLKAAPGSQAAYSNLAFDLLADALANASGKPYTQLFEEKITRPLGMKDTTYTPSPDQCKRLMVAEKGASPCNNTLAAIGSGGVYSTPGDMMRWMQQYLSSDFYQRSNQADRMQTLIYQRTQLTRVTGMDVPGKADALGLGWVYMAPKNGRPGIIQKTGGGGGFITYMAMIPQKNVGAFVVVTRSPLTRFTNMSNGINDLVVELSENTPRVIPAS
>NZ_CP011132.1|WP_046476080.1|353830_354364_+|isochorismatase-family-protein
MSEKRVVMVVDMQVGVFATPRIHREACVERINQLTRAADLTIFIQHTEAGGLEEGSAGFALLPELSTPANAKYVTKTACDSFYKTALESLLREEAISHFVICGCATDYCVDTTIRIGASRGYRITVAEDAHTTAHRPAAPAQTLIAHHNDVWRNLIVPDNPVWVKPVDTILQDWKTN

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Crispr_ID: NZ_CP011132_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011132_2

798201-798336

Orphan

Consensus_repeat	Method
GCCTTATCCGGCCTACGGTGACTTACACCCGATGAAGCAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011132_2

>merge|NZ_CP011132|2|798201-798336|CRISPRCasFinder
GCCTTATCCGGCCTACGGTGACTTACACCCGATGAAGCATCTCGTAGGTCTGATAAGCGCAGCGCCATCAGGCAGTTTGCCGGATGACGGCACAAGGCCTTATCCGGCCTACGGTGACTTATACCCGATGAAGCAT

>NZ_CP011132|2|2|798201-798336|CRISPRCasFinder
GCCTTATCCGGCCTACGGTGACTTACACCCGATGAAGCAT	CTCGTAGGTCTGATAAGCGCAGCGCCATCAGGCAGTTTGCCGGATGACGGCACAAG
GCCTTATCCGGCCTACGGTGACTTATACCCGATGAAGCAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011132.1\|WP_046477676.1\|799340_800582_-\|cardiolipin-synthase-ClsB	unknown	unknown	gnl\|CDD\|236888
NZ_CP011132.1\|WP_046477654.1\|789343_790099_+\|malonyl-ACP-O-methyltransferase-BioC	unknown	unknown	gnl\|CDD\|182340
NZ_CP011132.1\|WP_046477659.1\|791342_793364_+\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NZ_CP011132.1\|WP_046477666.1\|796255_796741_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	unknown	unknown	gnl\|CDD\|236483
NZ_CP011132.1\|WP_046477672.1\|797487_798192_+\|Bax-inhibitor-1/YccA-family-protein	unknown	unknown	gnl\|CDD\|198414
NZ_CP011132.1\|WP_046477680.1\|801469_801880_+\|YbhQ-family-protein	unknown	unknown	gnl\|CDD\|314103
NZ_CP011132.1\|WP_046477674.1\|798378_799341_-\|UPF0104-family-protein	unknown	unknown	gnl\|CDD\|223469
NZ_CP011132.1\|WP_046477687.1\|803908_805042_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223912
NZ_CP011132.1\|WP_046477668.1\|796733_796979_+\|molybdopterin-synthase-sulfur-carrier-subunit	unknown	unknown	gnl\|CDD\|182985
NZ_CP011132.1\|WP_046477678.1\|800578_801337_-\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|226098
NZ_CP011132.1\|WP_046477664.1\|795740_796253_+\|molybdenum-cofactor-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|131715
NZ_CP011132.1\|WP_046477693.1\|807758_808433_-\|transcriptional-regulator-CecR	unknown	unknown	gnl\|CDD\|236928
NZ_CP011132.1\|WP_046477661.1\|793419_794328_-\|YvcK-family-protein	unknown	unknown	gnl\|CDD\|211689
NZ_CP011132.1\|WP_155403972.1\|803350_803596_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011132.1\|WP_046477670.1\|796980_797433_+\|molybdopterin-synthase-catalytic-subunit-MoaE	unknown	unknown	gnl\|CDD\|182642
NZ_CP011132.1\|WP_046477689.1\|805034_806771_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP011132.1\|WP_046477663.1\|794725_795715_+\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|234672
NZ_CP011132.1\|WP_046477691.1\|806763_807759_-\|secretion-protein-HlyD	unknown	unknown	gnl\|CDD\|235136
NZ_CP011132.1\|WP_046477655.1\|790091_790778_+\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|234625
NZ_CP011132.1\|WP_046477683.1\|801841_802948_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925

Protein	Function_ID	Function_description	E-value
NZ_CP011132.1\|WP_046477676.1\|799340_800582_-\|cardiolipin-synthase-ClsB	gnl\|CDD\|236888	PRK11263, PRK11263, cardiolipin synthase ClsB.	0
NZ_CP011132.1\|WP_046477654.1\|789343_790099_+\|malonyl-ACP-O-methyltransferase-BioC	gnl\|CDD\|182340	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.	6.10215e-151
NZ_CP011132.1\|WP_046477659.1\|791342_793364_+\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP011132.1\|WP_046477666.1\|796255_796741_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	3.88597e-105
NZ_CP011132.1\|WP_046477672.1\|797487_798192_+\|Bax-inhibitor-1/YccA-family-protein	gnl\|CDD\|198414	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins. This family is comprised of bacterial relatives of the mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. In plants, BI-1 like proteins play a role in pathogen resistance. A characterized prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.	1.30535e-70
NZ_CP011132.1\|WP_046477680.1\|801469_801880_+\|YbhQ-family-protein	gnl\|CDD\|314103	pfam11076, YbhQ, Putative inner membrane protein YbhQ. This family is conserved in Proteobacteria. The function is not known but most members are annotated as being inner membrane protein YbhQ.	8.52782e-66
NZ_CP011132.1\|WP_046477674.1\|798378_799341_-\|UPF0104-family-protein	gnl\|CDD\|223469	COG0392, COG0392, Predicted integral membrane protein [Function unknown].	3.65088e-47
NZ_CP011132.1\|WP_046477687.1\|803908_805042_-\|ABC-transporter-permease	gnl\|CDD\|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	2.85379e-29
NZ_CP011132.1\|WP_046477668.1\|796733_796979_+\|molybdopterin-synthase-sulfur-carrier-subunit	gnl\|CDD\|182985	PRK11130, moaD, molybdopterin synthase small subunit; Provisional.	4.14447e-53
NZ_CP011132.1\|WP_046477678.1\|800578_801337_-\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|226098	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only].	2.27449e-90
NZ_CP011132.1\|WP_046477664.1\|795740_796253_+\|molybdenum-cofactor-biosynthesis-protein-B	gnl\|CDD\|131715	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B., molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.89579e-101
NZ_CP011132.1\|WP_046477693.1\|807758_808433_-\|transcriptional-regulator-CecR	gnl\|CDD\|236928	PRK11552, PRK11552, putative DNA-binding transcriptional regulator; Provisional.	1.25383e-146
NZ_CP011132.1\|WP_046477661.1\|793419_794328_-\|YvcK-family-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	1.35948e-129
NZ_CP011132.1\|WP_046477691.1\|806763_807759_-\|secretion-protein-HlyD	gnl\|CDD\|235136	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional.	0
NZ_CP011132.1\|WP_046477670.1\|796980_797433_+\|molybdopterin-synthase-catalytic-subunit-MoaE	gnl\|CDD\|182642	PRK10678, moaE, molybdopterin synthase catalytic subunit MoaE.	9.56671e-113
NZ_CP011132.1\|WP_046477689.1\|805034_806771_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.05532e-92
NZ_CP011132.1\|WP_046477663.1\|794725_795715_+\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	0
NZ_CP011132.1\|WP_046477655.1\|790091_790778_+\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	1.09558e-107
NZ_CP011132.1\|WP_046477683.1\|801841_802948_-\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	2.55219e-34

>NZ_CP011132.1|WP_046477672.1|797487_798192_+|Bax-inhibitor-1/YccA-family-protein
MDRFPRSESIVQARSGLQTYMAQVYGWMTVGLLLTAFIAWYAANSSAFMELLYTNRIFFFGLVIAQLAVVFVLSGLVNRLSAGVMTTLFMLYSVLTGLTLSSIFIIYTASSIASTFVVTGGMFGVMSLWGYTTKRDLSGWGNLLFMALIGIILASLVNFWLKSEALMWAVTYIGVVVFVGLTAYDTQKLKNIGEQIDVRDSSNLRKYSILGALTLYLDFINLFLMLLRILGNRR
>NZ_CP011132.1|WP_046477670.1|796980_797433_+|molybdopterin-synthase-catalytic-subunit-MoaE
MAETKIIVGPAPFSVGEEYPWLAERDEDGAVVTFTGKVRNHNLGDSVKALTLEHYPGMTEKALAEIVDDARARWPLGRVTVIHRTGELWPGDEIVFVGVTSSHRSSSFEAGQFIMDYLKTRAPFWKREATPEGERWVEARDSDRQAAQRW
>NZ_CP011132.1|WP_046477668.1|796733_796979_+|molybdopterin-synthase-sulfur-carrier-subunit
MIKVLFFAQVRELVGTDALDVAADFPTVEALRQHLAANSNRWALALEDGKLLAAVNQTLVSFDHPLSTGDEVAFFPPVTGG
>NZ_CP011132.1|WP_046477666.1|796255_796741_+|cyclic-pyranopterin-monophosphate-synthase-MoaC
MSQLTHINAAGEAHMVDVSAKAETVREARAEAFITMRSETLAMIIDGSHHKGDVFATARIAGIQAAKRTWELIPLCHPLLLSKVEVQLQAQPEHNRVRIESLCRLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDFKADSHD
>NZ_CP011132.1|WP_046477664.1|795740_796253_+|molybdenum-cofactor-biosynthesis-protein-B
MSQVSAEFIPTRIAILTVSNRRGEEDDTSGHFLRDAAQEAGHQIIDKAIVKENRYAIRAQVSAWIASDEVQVVLVTGGTGLTEGDQAPEALLPLFDREVEGFGEVFRMLSFEEIGTATLQSRAVAGVANKTLIFAMPGSTKACRTAWDNIIAPQLDARTHPCNFHPHLKK
>NZ_CP011132.1|WP_046477663.1|794725_795715_+|GTP-3',8-cyclase-MoaA
MATQLTDAFARKFYYLRLSITDVCNFRCTYCLPDGYKPGGVTNKGFLTVDEIRRVTRAFANLGTEKVRLTGGEPSLRRDFTDIIAAVRENEAIRQLAVTTNGYRLARDAAHWRDAGLTGINVSVDSLDARQFRAITGQDKFQQVMAGIDAAFDAGFEKVKVNTVLMRDVNHHQLDTFLDWIQTRPIQLRFIELMETGEGSDLFRKHHISGQVLRDELLRRGWIHQLRQRSDGPAQVFCHPDYEGEIGLIMPYEKDFCATCNRLRVSSVGKLHLCLFGEGGVSLRDLLEDDAQQAALEERISLALREKKQTHFLHQNNTGITQNLSYIGG
>NZ_CP011132.1|WP_046477661.1|793419_794328_-|YvcK-family-protein
MRNRTLADLDRVVALGGGHGLGRVLSSLSPLGSRLTGIVTTTDNGGSTGRIRRSEGGIAWGDMRNCLNQLITEPSVASAMFEYRFGGNGELSGHNLGNLMLKALDHLSVRPLEAINLIRNLLKVDAHLIPMSELPVDLMAIDDQGHEVYGEVNIDQLTSPLQELMLSPKVPTTREAVQAINDADLIIIGPGSFYTSLMPILLLDELAQALRRTQAPMVYIGNLGRELSIPAASLTLLDKLTIMEQYVGKKVVDAVIVGPKVDISAVSDRVVIQEVLEASDIPYRHDRQLLHSALEKAVQALG
>NZ_CP011132.1|WP_046477659.1|791342_793364_+|excinuclease-ABC-subunit-B
MSKAFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHMTVGMIIDQRAILRRLAELQYTRNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTISRYTIYPKTHYVTPRERIVQAMEEIKVELAERRKVLLANDKLLEEQRLSQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPVIEVRPVATQVDDLLSEIRKRAQINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNINGKAILYGDKITASMAKAISETERRREKQQQYNEEHGIIPQGLNKKVVDILALGQNIAKTRAKGRGKSRSAAKSDVVELDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS
>NZ_CP011132.1|WP_046477655.1|790091_790778_+|ATP-dependent-dethiobiotin-synthetase-BioD
MTKRYFVTGTDTEVGKTVASCALLQAARSLGYRTAGYKPVASGSEMTPEGLRNSDALALQHNSSLALDYAAVNPYTFAEPTSPHIISADEGRPIRADVMSDGLRALDAQAEWLLVEGAGGWFTPLAEDFTFADWVQREQLPVILVVGVKLGCINHAMLTAQAVQQAGLPLAGWVANDVTPPGKRHHEYLATLKRAIPAPWLGEIPWLAAGAENAATGQYLDLALLDGE
>NZ_CP011132.1|WP_046477654.1|789343_790099_+|malonyl-ACP-O-methyltransferase-BioC
MGQVNKQAVAAAFGRAAAHYEQHATLQRLSADALLAQLPARQFLQVLDAGCGPGRLSRYWREQGCQVTALDLSARMLDEARRQDVAHHYLAGDIESLPLASETFDLAWSNLAVQWCDSLSDALSELYRVVRPGGCVAFTTLAQDSLPELHQAWRAVDDRAHGNRFLSREALGDAMCNWQGHHHLISLTLEFDDALSAMRSLKGIGATHLHEGRTSGVLTRSQLQQLQVAWPQRQGKYPLTYHLFAGVITRD
>NZ_CP011132.1|WP_046477674.1|798378_799341_-|UPF0104-family-protein
MAKSHPRWRLAKKILTWLFFIAVIVLLVIYASKVNWEEVWTVIRDYNRVALLSAVGLVILSYLLYGCYDLLGRAYCGHRLAKRQVMLVSFICYAFNLTLSTWVGGIGMRYRLYSRLGLPGGTITRIFSLSITTNWLGYILLGGIIFTFGVVQLPTHWYIDESTLRILGVALLFIIAIYLWFCAFAKHRHMTIKGQKLVLPSWKFALVQMAISSANWMVMGAIIWLLLGQEVNYFFVLGVLLVSSIAGVIVHIPAGIGVLEAVFIALLAGEDTSQGIIIAALLAYRVLYYFVPLLLALIGYLLLESRAKKLRAKNEKAMAK
>NZ_CP011132.1|WP_046477676.1|799340_800582_-|cardiolipin-synthase-ClsB
MKCGWREGNQIQLLENGDQYYPAVFAAIADAQQKIILETFIWFEDEVGKQLHAALLTAAKRGVKAEVLLDGYGSPDLSDAFVGELTSAGVVFRYYDPRPRIFGMRTNVFRRMHRKIVVIDNRVAFVGGINYSDEHMSDYGPEAKQDYAVRVEGPVVADILQFEVENLPGQSAVRRWWRRHHRAEENRQPGEAQALFVWRDNDEHRDDIERHYLKMLTQARREVIIANAYFFPGYRLLHAMRKAARRGVRVKLIVQGEPDMPIVKVGARLLYNYLVKGDVQVYEYRRKPLHGKVALMDDHWATVGSSNLDPLSLSLNLEANLVVHDRAFNQTLRDNLNAIIAEDCKRVDESMLPRRTWWNLTKSVLAFHFLRHFPALVGWLPAHTPHLAQVDPPAQPEMETQDRVEVQNTGAKP
>NZ_CP011132.1|WP_046477678.1|800578_801337_-|endonuclease/exonuclease/phosphatase-family-protein
MTQSTRNFSFTVLTINTHKGFTAFNKRFILPELRDAVRTVGADIVCLQEVMGAHEVHPLHVENWPDTTHYEFLADTMWSDYAYGRNAVYPQGHHGNAVLSRYPIEHDENRDISVGTSEKRGVLYCRIVPPQLGKPIHVMCVHLGLREAHRQAQLTLLADWVNALPDGEPVVVAGDFNDWRQKANPQLKAAGLDEIFTRAHGRPARTFPASLPLLRLDRIYVKNANASSPTALPLRNWRHLSDHAPLSAEIHL
>NZ_CP011132.1|WP_046477680.1|801469_801880_+|YbhQ-family-protein
MRWQQRVRVATGLSCWQIMLHLLVVALLVMGWMSGTLVHVGLGLCVVYGVTVLLMLALQRHHEQRWREVADVLEELTTTWYFGAALIVLWLLSRVLQNNILLAIAGLAILAGPAVVSLLAKDKKLHNFASKHRIRR
>NZ_CP011132.1|WP_046477683.1|801841_802948_-|ABC-transporter-permease
MFHRLWTLIRKELQSLLREPQTRAILILPVLIQVFLFPFAATLEVTNATIAIYNEDNGKHSVELTQRFARAKAFTHILLLKSPQEIQPTIDTQKALLLVRFPADFSRNLDTFQSAPMQLILDGRNSNSAQIAANYLQQIVKNYQQELMEGKPKPNNSELVVRNWYNPNLDYKWFVVPSLIAMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQIFIGKAVPALIVATGQASIVLAIGIWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISSLCSTQQQAFIGVFVFMMPAILLSGYVSPVENMPVWLQNLTWINPIRHFTDITKQIYLKDASLQIVWGSLWPLLVIAATTGSAAYAMFRRKIM
>NZ_CP011132.1|WP_155403972.1|803350_803596_+|hypothetical-protein
MKHSVGLISVAPSGSLPDDGTRPYPAYGDSYLMKHSVDLISVAPSGSFPDGGTRPYPAYGDLPDEALRRPDKRSAIRQFAG
>NZ_CP011132.1|WP_046477687.1|803908_805042_-|ABC-transporter-permease
MGNRLLSWRRVRALCVKETRQIVRDPSSWLIAVVIPLLLLFIFGYGINLDSSKLRVGILLEQQSKEALDFAHTMTGSPYIDATISDNRQALIEKMQAGRIRGLVVIPVDFAQQMARANDTAPIQVITDGSEPNTANFVQGYVEGIWQIWQMQRAEDRGETFEPLIEVQTRYWFNPAAISQHFIIPGAVTIIMTVIGAILTSLVVAREWERGTMEALLSTEVTRAELLLCKLIPYYFLGMLAMGLCMLVSVFILGVPYRGSLLLLFFITSLFLLSTLGMGLLISTITRNQFNAAQVALNAAFLPSIMLSGFIFQIDSMPAVIRAVTYIIPARYFVSTLQSLFLAGNIPVVLIVNVLFLIASAVMFIGLTWIKTKRRLD
>NZ_CP011132.1|WP_046477689.1|805034_806771_-|ABC-transporter-ATP-binding-protein
MNDAVITLSGLTKRFAGLEKPAVAPLDCTIHAGYVTGLVGPDGAGKTTLMRMLAGLLKPDGGSATVIGFDPIKNDSALHAVLGYMPQKFGLYEDLTVMENLNLYADLRSVTGDVREKTFARLLEFTSLGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVLLLDEPGVGVDPISRRELWQMVHELAGDGMLILWSTSYLDEAEQCRDVLLMNEGELLYQGEPTQLTQTMAGRSFLMHSPQENNRKLLQRALKLPQVSDGMIQGKSVRLILKKEATADDIRHGNGMPEIDISETAPRFEDAFIDLLGGAATSESPLGAILHTVEGTPGETVIEAKALTKKFGDFAATDHVDFAVQRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGKALVLDMDLKVSSGKARQHLGYMAQKFSLYGNLTVEQNLRFFSGVYGLRGRAQNEKIARMSEAFGLKSIASHATDELPLGFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINSMVEKGVTVMVTTHFMDEAEYCDRIGLVYRGKLIASGTPDDLKAQAADDDTPDPTMEQAFIRLINDWDKEHANG
>NZ_CP011132.1|WP_046477691.1|806763_807759_-|secretion-protein-HlyD
MKKPVVIGLVIAALLAVIAGGTWWYQSRQDNGLTLYGNVDIRTVNLSFRVGGRLASLAVDEGDAIKTGQVLGELDHAPYENALMQAKAGVSVAQAQYDLMLAGYRQEEIAQAAAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQALATLKSAQDKLRQYRSGNREQDIAQAKASLEQAQAQLAQAELDLHDTTLVAPSNGTLLTRAVEPGSMLSAGGTVLTLSLTRPVWVRAYVDERHLSQAQPGREILLYTDGRPDKPYHGKIGFVSPTAEFTPKTVETPDLRTDLVYRLRIVVTDADDALRQGMPVTVKFGNEAGHE
>NZ_CP011132.1|WP_046477693.1|807758_808433_-|transcriptional-regulator-CecR
MNTPTMTTKGEQAKSQLIAAALAQFGEYGLHATTRDIAAQAGQNIAAITYYFGSKEDLYLACAQWIADFIGSQFRPHAEDAERLFAQAHPDRAAMRELILRACKNMIMLLTQDDTVNLSKFISREQLSPTAAYQRVHEQVIEPLHSHLTRLIAAYTGCDAHDTRMILHTHALLGEVLAFRLGKETILLRTGWSQFDEEKTALITQTVTCHIDLILQGLSQRSLD

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Crispr_ID: NZ_CP011132_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011132_3

1388958-1389091

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011132_3

>merge|NZ_CP011132|3|1388958-1389091|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACAGACGCATATAAAGATGAGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP011132|3|3|1388958-1389091|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CAGACGCATATAAAGATGAGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011132.1\|WP_086512609.1\|1396527_1396617_+\|YnhF-family-membrane-protein	unknown	unknown	unknown
NZ_CP011132.1\|WP_046480473.1\|1390841_1391483_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP011132.1\|WP_046480486.1\|1398706_1399540_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|223862
NZ_CP011132.1\|WP_046480466.1\|1382896_1384507_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP011132.1\|WP_046480472.1\|1387162_1388893_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197270
NZ_CP011132.1\|WP_046480484.1\|1397998_1398580_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP011132.1\|WP_046480460.1\|1380477_1381296_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP011132.1\|WP_046480464.1\|1382362_1382554_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011132.1\|WP_046480462.1\|1381297_1382131_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270407
NZ_CP011132.1\|WP_046480470.1\|1386052_1387117_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011132.1\|WP_046480475.1\|1391521_1392670_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP011132.1\|WP_046480467.1\|1384671_1385469_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293813
NZ_CP011132.1\|WP_046480481.1\|1395207_1396233_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP011132.1\|WP_155403979.1\|1382672_1382813_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011132.1\|WP_046480479.1\|1394278_1395211_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP011132.1\|WP_046480469.1\|1385505_1385811_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NZ_CP011132.1\|WP_046480477.1\|1392961_1394167_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP011132.1\|WP_046480483.1\|1396785_1397952_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP011132.1\|WP_046497819.1\|1389249_1390623_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
NZ_CP011132.1\|WP_162200262.1\|1379698_1380481_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223836

Protein	Function_ID	Function_description	E-value
NZ_CP011132.1\|WP_046480466.1\|1382896_1384507_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP011132.1\|WP_046480472.1\|1387162_1388893_+\|hypothetical-protein	gnl\|CDD\|197270	cd09173, PLDc_Nuc_like_unchar1_2, Putative catalytic domain, repeat 2, of uncharacterized hypothetical proteins similar to Nuc, an endonuclease from Salmonella typhimurium. Putative catalytic domain, repeat 2, of uncharacterized hypothetical proteins, which show high sequence homology to the endonuclease from Salmonella typhimurium and vertebrate phospholipase D6. Nuc and PLD6 belong to the phospholipase D (PLD) superfamily. They contain a short conserved sequence motif, the HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue), which characterizes the PLD superfamily and is essential for catalysis. Nuc and PLD6 utilize a two-step mechanism to cleave phosphodiester bonds: Upon substrate binding, the bond is first attacked by a histidine residue from one HKD motif to form a covalent phosphohistidine intermediate, which is then hydrolyzed by water with the aid of a second histidine residue from the other HKD motif in the opposite subunit. However, proteins in this subfamily have two HKD motifs in a single polypeptide chain.	2.61942e-36
NZ_CP011132.1\|WP_046480484.1\|1397998_1398580_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	4.35746e-138
NZ_CP011132.1\|WP_046480475.1\|1391521_1392670_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP011132.1\|WP_046480479.1\|1394278_1395211_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP011132.1\|WP_046480462.1\|1381297_1382131_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270407	cd13689, PBP2_BsGlnH, Substrate binding domain of ABC glutamine transporter from Bacillus subtilis; the type 2 periplasmic-bindig protein fold. This group includes periplasmic glutamine-binding domain GlnP from Bacillus subtilis and its related proteins. The GlnP domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	6.30617e-106
NZ_CP011132.1\|WP_046480460.1\|1380477_1381296_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	4.39395e-142
NZ_CP011132.1\|WP_046480467.1\|1384671_1385469_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293813	cd07727, YmaE-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YmaE and related proteins; MBL-fold metallo hydrolase domain. Includes the uncharacterized Bacillus subtilis YmaE and Nostoc all1228 proteins.Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry. .	2.77094e-45
NZ_CP011132.1\|WP_046480481.1\|1395207_1396233_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP011132.1\|WP_046480473.1\|1390841_1391483_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	1.22496e-121
NZ_CP011132.1\|WP_046480486.1\|1398706_1399540_-\|C40-family-peptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	9.66373e-45
NZ_CP011132.1\|WP_046480469.1\|1385505_1385811_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	1.47829e-64
NZ_CP011132.1\|WP_046480477.1\|1392961_1394167_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP011132.1\|WP_046480483.1\|1396785_1397952_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	4.55598e-100
NZ_CP011132.1\|WP_046497819.1\|1389249_1390623_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP011132.1\|WP_162200262.1\|1379698_1380481_-\|ABC-transporter-permease-subunit	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.27827e-53

>NZ_CP011132.1|WP_046480472.1|1387162_1388893_+|hypothetical-protein
MSEYTCYATDNGFHFKLWRGERMVLLGFDVDEPEPDFVGFAVKVCPPNSKKYTCLKNRIAFDYTDAKVTGDRLFDTNVAPLQRFRWIHFPWQPVAGIYHYQATKMHMEPDGSLREGITLENSIELSPVTYDDIVDIGFTRNFASSQAYRDQFNNNSDIIPGAGEDGLNFKLRDDVKNSRGETVYDWLGFEAKTLIDTFIQEVVDNPDLHLDFMAFDLDLPDLVEKLEAIGPRLRAVIDDSSKKDKETGIPEGHGAKNSSESVASQRLTAAGAQVTRTRFFNLQHHKVLIQRDKQNQAVKVLCGSTNFSFRGLYIQANNVLVFHSSGVAASFGQMFEEAFTKPEAFRHSPLSQSIQTIKHANGPTVNISYSPHRETSLSLDPVVNAINQASSSVFYSIAFLNNMKESPVGVALTELLNRPVFSYGTVNTAGELQVIKPDGTLAVADFAYLAKKAPEPFRTEWAGGKGINIHHKFVVTDFNLASAKVFTGSSNLAPSGEKNNGDHLIMIEDQKIATAYVIEAIRVFDHLQFRQRMQGAADVQVITLLKPEAMTGQPAWFTRFYVAGSQANNDRLLFSR
>NZ_CP011132.1|WP_046480470.1|1386052_1387117_+|hypothetical-protein
MRLLLILPISALLLLPPTAELQAASSAIVPVQPGVATPIARAPCITPPEASPVGTITVEKDGALFVASITVPETQQAPFLVTLNTGETNVAPCSGDKPLLVQVIPKQQAQISSASVQQAFMVLMAAFVLALLMESAFALLFNWRLFQALVVGRAWRTPIMLVGSWLVVSSFKLDLIVELFSAYRGFTVSGGVFTEILTAMIVSGGSVGVNKILTGLGFRSAIPRQDPNTDRASLAQNEAWVSLDISAVLPGRRLSVEMQEDVAPAGTAPTLAIFTPPGEGRLKAIMFPSRGRLPASGGMRVSALDKLYYFAIRDLNSNQLYDVNGNKIPDIRHSAPYCFAARAIVDFSVVKLQP
>NZ_CP011132.1|WP_046480469.1|1385505_1385811_-|monooxygenase
MPKLLQLHFAFDGPFGQEMADQLRGLAESINQEPGFLWKVWTESEQNQEAGGIYLFENEETALAYLDKHTARLKNLGVEDVIAKIFDVNIPLSEINNAKLG
>NZ_CP011132.1|WP_046480467.1|1384671_1385469_+|MBL-fold-metallo-hydrolase
MITLCKACGTSYDASQRPVERCKICQDERQYVPVSGQSWIDFDDLTRSHTNRWQQHTPHLFSLTTIPAFAINQRAFLLRTPVGNVLWDCIANLDPATRTIIRALGGLSSIAISHPHYYTTMQNWAEAFDAPVWLHAADSGWIMRDSPWIRLWEGEEHSLLPGITLLRLGGHFAGGTVLYQDEGEGTLLSGDILQVTPGADAVSFMWSYPNMLPLSSGTVAGIMRRLEGVKFASLYGAFEGLNIVSDAHEIVQRSGAKYLSCLTSR
>NZ_CP011132.1|WP_046480466.1|1382896_1384507_-|FAD-NAD(P)-binding-protein
MKKIAIIGAGPTGVYTFFSLLKEDQPLEIAIFERGREAGIGMPYGHSENTPIMLANIASIEVPPLFDTWLEWLQTQEAQYLAQYGVKKESLHQRQFLPRILLGDYFRAQFLHAVRQAENQGFKITLYESCEVTDVAAGPTGVQLWTDQHAAALHVDLAIIATGHVWPDDDESTRAFYPSPWSGLMEADVPAVRVGILGTSLSALDAAMAVAVQHGTFHETEENQVHFSLDKDSEALEITLMSRSGILPEADFYCPIPYEPLACATDEAITREIDAGSAGLLDRVFTLMQQELTLADPKWAQKISLSLLDADSFPTALFADRTHSDPFDWAAANLKEVEANKRDKHTVAWRYTLLRLHEGVQDIVAHLDEKDSRRFSSGLARVFIDNYAAIPSESIRRMLALHAAGILRILTLGQNYGKEIKADRTEITTHNDRLTFDVFIDARGQKPLKTADLPFPRLRRQLLSCGDDIPEVGDDYTLQASESVRGRIAFGALPYLMHDRPFIQGLVACQEIGTAMARAVSKPATRLRRRLSLYDA
>NZ_CP011132.1|WP_155403979.1|1382672_1382813_-|hypothetical-protein
MEIDLDNLVFSGLEEAQERNAERLEDADKKAESVIADDDCGDACKI
>NZ_CP011132.1|WP_046480464.1|1382362_1382554_+|hypothetical-protein
MEKIKMWMARLSARDVITPDPTRQPGAEVNLQRVVESILPVASLYGVDIANIDPEWFRDQTTR
>NZ_CP011132.1|WP_046480462.1|1381297_1382131_-|ABC-transporter-substrate-binding-protein
MMATKIHSSKKTILALGVMLAASVISVQVQADQLADIKAAGVVKVATFDANPPFGSVDAKTHQIVGYDVDFAQALAKSLGVKLELVATNPANRIPLLQSGKADLIVADITITPERAQVIDFSVPYFVTGQQFLVPVSSPDKLDEYSRARIGAVKGTTGEQALHQRFPQSRVLAYDDIPLALTALRNGNVQAITQDSTILAGLLGGAPDKAQFKILPDLLSKEEIGVGVKKGETALLKAVNDELLRLESSEQASKIYDVWFGPETKNPQPRAFKIEAR
>NZ_CP011132.1|WP_046480460.1|1380477_1381296_-|amino-acid-ABC-transporter-ATP-binding-protein
MLAGLFTPSAAQAADFSQLRQARVALRDVVKAYGDHRVLNGVSLTVEPGEVVTILGPSGSGKSTLIRLINQLESLSGGDIFIDDKPIGQLKGAALRHLRSRIGFVFQQFNLYAHLTAQQNITLALEYVHGWNKTDATKRASALLEQVGLEEKADAYPAQLSGGQQQRVAIARALASSPQIILFDEPTSALDPEMIGEVLQVMKRLAHSGITMIVVTHEMHFAREIADRVVFIDGGDILEVAPPDDFFTRPQHPRTQRFLQKVLDPLHQESSQ
>NZ_CP011132.1|WP_162200262.1|1379698_1380481_-|ABC-transporter-permease-subunit
MMPSMDWQGVLTGLPLQWILSGFLTTLWVSAAGILLATLLAIILLALRLSGHMAGRRVVACWVSLFRNTPLLVQLLFWYFAGWNLLPRGFVDFVNAEHGWSILPGNVWWLTPEFLCSAWGLGVFTSAFLVEEVASGLQAVSAGQREAAVSQGFSSWQTFRHILLPQGLTNAWQPVVGQYLNLMKLSSLASGIGFAELTYQVRQIESYNAHALEAFAVGTGLYLFTGVALGLLLTRLGPAPRQEKKIPARRLRFRSPQHDR
>NZ_CP011132.1|WP_046497819.1|1389249_1390623_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARQLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMVVLWNAGYIIRAMHNIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFLGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFCAMLWYVKHARSMRDIRNEQRFSKPDSAVMKRLVQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLGVGVCMACLTAIFTVTLREHIALLYNDNPEVVTLAAQLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFFITLTAYWVLGLPSGYILALTDLVVDRMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRQPSTVILQRAAR
>NZ_CP011132.1|WP_046480473.1|1390841_1391483_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPEYMLDALETGASVAHNGCCLTVKEINGNRISFDLMKETLRITNLGDLNVGDLVNVERAAKFSDEIGGHLMSGHIMTTAEVSKILTSENNRQIWFKVQDPTLMKYILYKGFIGIDGISLTVGEVTATRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAAREAVVAKTASEA
>NZ_CP011132.1|WP_046480475.1|1391521_1392670_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDDWYRITNELLSRAGIAINGSSPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDQFFCKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPYMQYSCAYWKEADTLETAQQAKLRLICEKLQLQPGMRVLDIGCGWGGLSHYMATNYDVSVVGVTISAEQQKMAQERCAGLDVSILLQDYRDLHDQFDRIVSVGMFEHVGPKNYPTYFQVVDRNLKPEGLFLLHTIGSKKTDNNVDPWINKYIFPNGCLPSVRQIANASEAHFVMEDWHNFGADYDTTLMAWYERFLAAWPDIADNYTERFKRMFSYYLNACAGAFRARDIQLWQVVFSRGVEDGLRIAR
>NZ_CP011132.1|WP_046480477.1|1392961_1394167_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKGFLVWLAGLSVLGFLATDMYLPAFAAIQSDLQTPASAVSASLSLFLAGFAIAQLLWGPLSDRYGRKPILLLGLSIFALGSLGMLWVESATGLLVLRFIQAVGVCAATVIWQALVTDYYPSHRINRIFATIMPLVGLSPALAPLLGSWILTHLSWQAIFATLFFITLLLMLPALFLKPTTRARDDSNDKLTFTTLLRAKVYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGQQLLPWLLVIYALSVVATWAASFIHHITLAEILIPFCVMAIANGAIYPIVVAQALRPFPQATGRAAALQNTLQLGLCFLASLVVSWLISTPLLTTTSVMLSTVVLAGLGYKMQLQPSDVGEQRDNREVAHGESH
>NZ_CP011132.1|WP_046480479.1|1394278_1395211_+|LysR-family-transcriptional-regulator
MWSEYALEVVDAVARNGSFSSAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVVLTPAGAWFLKEGRSVIKKMQITRQQCQQIANGWRGQLPIAVDNIVRPERTRQLIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATQAIPVGGRYTFRDMGKLSWCCVVASTHPLAAMSGPLSDDTLRNWPSLVLEDTSRTLPKRVTWLLDNQKRVVVPDWDSSATCISAGLCVGMVPTHFAKPYLNKGQWVALDLENPFPDAACCLTWQQNDMSPALIWLLDYLGDSETLNKEWLREPDETPAKEA
>NZ_CP011132.1|WP_046480481.1|1395207_1396233_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAPYFAEIIEAVEQNCFQKGYTLILGNVWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPDPLLAMLEEYRHIPMVVMDWGEAKADFTDTVIDNAFEGGYMAGRYLVERGHREIGVIPGLMERNTGAGRLAGFMKAMDEALIKVPENWIVQGDFEPESGYRAMQQILSQAHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARFFTPALTTIHQPKDSLGETAFNMLLDRIVNKREESQSIEVHPRLVERRSVADGPFRDYRR
>NZ_CP011132.1|WP_086512609.1|1396527_1396617_+|YnhF-family-membrane-protein
MSTDLKFSLVTTFIVLALIVAGGLTAALH
>NZ_CP011132.1|WP_046480483.1|1396785_1397952_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRGRRNALIFLMAIFTLGNVLSAISPDYTTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTIANIGGVPAATWLGETIGWRMSFMATAGLGVISMLSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPAFVTGMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPLLAQNDVGAAVSMVVWGAATFAVVPPLQMRVMRVAHEAPGLSSSVNIGAFNLGNALGAAAGGAVISGGLGYSFVPVMGAIVAGLALLLVFVSARKQPEQVCVAG
>NZ_CP011132.1|WP_046480484.1|1397998_1398580_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIVRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKLADAITASFGSFAQFKAQFTDAAIKNFGSGWTWLVKGKDGKLAIVSTSNAGTPLTTDATPLMTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNFAA
>NZ_CP011132.1|WP_046480486.1|1398706_1399540_-|C40-family-peptidase
MARINRLSLTLCALLFTTIPFMPMAHASKQARDTADLSHNKKASDKKKSTATAKKTNKTSQKTVKKTTSKTSTKTASSSKKKLTAPAKVSKTASRKGKTVATKKIASVTWSEKCTPRKGHKPTCVKVKNTVPGKMADAHKVKVQKATSTAMNKLMSQIGKPYRWGGTSPRTGFDCSGLVYYAYKDLVKFRIPRTANEMYHLRDAAPIDRQELMNGDLVFFRTQGRGTADHVGVYVGNGKFIQSPRSGQEIQITSLSEDYWQRHYVGARRVMTPKTIR

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Crispr_ID: NZ_CP011132_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011132_4

1456520-1456611

Orphan

Consensus_repeat	Method
TTTTTAGCGGCTTGCGCTTTTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011132_4

>merge|NZ_CP011132|4|1456520-1456611|CRISPRCasFinder
TTTTTAGCGGCTTGCGCTTTTTGTTCTGGCGCTTTCTGCTCAGTCGTGGCTTTGGCTTTTTTCGGGTGTTTTTTAGCGGCCTGCGCTTTTTG

>NZ_CP011132|4|4|1456520-1456611|CRISPRCasFinder
TTTTTAGCGGCTTGCGCTTTTTG	TTCTGGCGCTTTCTGCTCAGTCGTGGCTTTGGCTTTTTTCGGGTGT
TTTTTAGCGGCCTGCGCTTTTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011132.1\|WP_046480553.1\|1447170_1448553_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129983
NZ_CP011132.1\|WP_046480552.1\|1446389_1447112_-\|dihydromonapterin-reductase	unknown	unknown	gnl\|CDD\|180586
NZ_CP011132.1\|WP_162200263.1\|1454636_1455002_+\|multidrug/spermidine-efflux-SMR-transporter-subunit-MdtJ	unknown	unknown	gnl\|CDD\|182471
NZ_CP011132.1\|WP_046480564.1\|1454988_1455318_+\|multidrug/spermidine-efflux-SMR-transporter-subunit-MdtI	unknown	unknown	gnl\|CDD\|182618
NZ_CP011132.1\|WP_046480568.1\|1458698_1459952_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340882
NZ_CP011132.1\|WP_046480571.1\|1461101_1462322_+\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
NZ_CP011132.1\|WP_046480570.1\|1460073_1460973_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176106
NZ_CP011132.1\|WP_046480567.1\|1456934_1458419_-\|carboxypeptidase-M32	unknown	unknown	gnl\|CDD\|341054
NZ_CP011132.1\|WP_046480573.1\|1462447_1463143_+\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|237083
NZ_CP011132.1\|WP_046480577.1\|1465026_1465929_-\|osmoprotectant-ABC-transporter-substrate-binding-protein-OsmX	unknown	unknown	gnl\|CDD\|270329
NZ_CP011132.1\|WP_046480576.1\|1464369_1465017_-\|osmoprotectant-ABC-transporter-permease-OsmW	unknown	unknown	gnl\|CDD\|224095
NZ_CP011132.1\|WP_046480565.1\|1455357_1456179_-\|serine-protease	unknown	unknown	gnl\|CDD\|226119
NZ_CP011132.1\|WP_046480560.1\|1453187_1454222_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|183405
NZ_CP011132.1\|WP_046497835.1\|1450210_1451740_+\|Re/Si-specific-NAD(P)(+)-transhydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|236507
NZ_CP011132.1\|WP_046480558.1\|1451750_1453139_+\|Re/Si-specific-NAD(P)(+)-transhydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|236520
NZ_CP011132.1\|WP_046480574.1\|1463221_1464370_-\|osmoprotectant-ABC-transporter-ATP-binding-protein-OsmV	unknown	unknown	gnl\|CDD\|224050
NZ_CP011132.1\|WP_046480555.1\|1448739_1449684_-\|DUF1471-domain-containing-protein	unknown	unknown	gnl\|CDD\|369322
NZ_CP011132.1\|WP_099434124.1\|1456280_1456364_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011132.1\|WP_046480578.1\|1465957_1466668_-\|osmoprotectant-ABC-transporter-permease-OsmY	unknown	unknown	gnl\|CDD\|224095
NZ_CP011132.1\|WP_046480580.1\|1466961_1467576_-\|Tat-proofreading-chaperone-DmsD	unknown	unknown	gnl\|CDD\|236938

Protein	Function_ID	Function_description	E-value
NZ_CP011132.1\|WP_046480553.1\|1447170_1448553_-\|amino-acid-permease	gnl\|CDD\|129983	TIGR00905, Arginine/ornithine_antiporter, transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP011132.1\|WP_046480552.1\|1446389_1447112_-\|dihydromonapterin-reductase	gnl\|CDD\|180586	PRK06483, PRK06483, dihydromonapterin reductase; Provisional.	2.45395e-164
NZ_CP011132.1\|WP_162200263.1\|1454636_1455002_+\|multidrug/spermidine-efflux-SMR-transporter-subunit-MdtJ	gnl\|CDD\|182471	PRK10452, PRK10452, multidrug/spermidine efflux SMR transporter subunit MdtJ.	1.10831e-62
NZ_CP011132.1\|WP_046480564.1\|1454988_1455318_+\|multidrug/spermidine-efflux-SMR-transporter-subunit-MdtI	gnl\|CDD\|182618	PRK10650, PRK10650, multidrug/spermidine efflux SMR transporter subunit MdtI.	1.54675e-57
NZ_CP011132.1\|WP_046480568.1\|1458698_1459952_-\|MFS-transporter	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.51584e-85
NZ_CP011132.1\|WP_046480571.1\|1461101_1462322_+\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	2.10639e-66
NZ_CP011132.1\|WP_046480570.1\|1460073_1460973_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176106	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LTTRs involved in degradation of aromatic compounds, such as CbnR, BenM, CatM, ClcR and TfdR, as well as that of other transcriptional regulators clustered together in phylogenetic trees, including XapR, HcaR, MprR, IlvR, BudR, AlsR, LysR, and OccR. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	9.44508e-64
NZ_CP011132.1\|WP_046480567.1\|1456934_1458419_-\|carboxypeptidase-M32	gnl\|CDD\|341054	cd06460, M32_Taq, Peptidase family M32, which includes thermostable carboxypeptidases TaqCP, PfuCP and FisCP. Peptidase family M32 is a subclass of metallocarboxypeptidases, distributed mainly in bacteria and archaea, whose members contain a HEXXH motif that participates in coordinating a divalent cation such as Zn2+ or Co2+. It includes the thermostable carboxypeptidases (E.C. 3.4.17.19) from Thermus aquaticus (TaqCP) and Pyrococcus furiosus (PfuCP), which have broad specificities toward a wide range of C-terminal substrates that include basic, aromatic, neutral and polar amino acids. These enzymes have a similar fold to the M3 peptidases such as neurolysin and the M2 angiotensin converting enzyme (ACE). The keratin-degrading extremophilic eubacterium Fervidobacterium islandicum M32 carboxypeptidase (FisCP) plays an important role in cellular metabolism, and significantly enhances the degradation of native chicken feathers. It has been shown to mainly cleave the C-termini of peptides with a basic amino acid sequence. Novel M32 peptidases from some eukaryotes: protozoa Trypanosoma cruzi, a causative agent of Chagas' disease, and Leishmania major, a parasite that causes leishmaniasis, have been identified, thus making these enzymes an attractive potential target for drug development against these organisms.	0
NZ_CP011132.1\|WP_046480573.1\|1462447_1463143_+\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|237083	PRK12374, PRK12374, ATP-dependent dethiobiotin synthetase BioD.	8.16366e-168
NZ_CP011132.1\|WP_046480577.1\|1465026_1465929_-\|osmoprotectant-ABC-transporter-substrate-binding-protein-OsmX	gnl\|CDD\|270329	cd13611, PBP2_YehZ, Substrate-binding domain YehZ of an osmoregulated ABC-type transporter; the type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein YehZ of Clostridium sticklandii is predicted to be involved in uptake of compatible solutes such as choline, L-proline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. YehZ belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.85057e-138
NZ_CP011132.1\|WP_046480576.1\|1464369_1465017_-\|osmoprotectant-ABC-transporter-permease-OsmW	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	3.87046e-74
NZ_CP011132.1\|WP_046480565.1\|1455357_1456179_-\|serine-protease	gnl\|CDD\|226119	COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid transport and metabolism].	2.00435e-82
NZ_CP011132.1\|WP_046480560.1\|1453187_1454222_-\|AI-2E-family-transporter	gnl\|CDD\|183405	PRK12287, tqsA, pheromone autoinducer 2 transporter; Reviewed.	0
NZ_CP011132.1\|WP_046497835.1\|1450210_1451740_+\|Re/Si-specific-NAD(P)(+)-transhydrogenase-subunit-alpha	gnl\|CDD\|236507	PRK09424, pntA, Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha.	0
NZ_CP011132.1\|WP_046480558.1\|1451750_1453139_+\|Re/Si-specific-NAD(P)(+)-transhydrogenase-subunit-beta	gnl\|CDD\|236520	PRK09444, pntB, Re/Si-specific NAD(P)(+) transhydrogenase subunit beta.	0
NZ_CP011132.1\|WP_046480574.1\|1463221_1464370_-\|osmoprotectant-ABC-transporter-ATP-binding-protein-OsmV	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	4.28428e-164
NZ_CP011132.1\|WP_046480555.1\|1448739_1449684_-\|DUF1471-domain-containing-protein	gnl\|CDD\|369322	pfam07338, DUF1471, Protein of unknown function (DUF1471). This family consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some members of this family are annotated as ydgH precursors and contain two copies of this region, one at the N-terminus and the other at the C-terminus. The function of this family is unknown.	2.03838e-17
NZ_CP011132.1\|WP_046480578.1\|1465957_1466668_-\|osmoprotectant-ABC-transporter-permease-OsmY	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	6.67254e-72
NZ_CP011132.1\|WP_046480580.1\|1466961_1467576_-\|Tat-proofreading-chaperone-DmsD	gnl\|CDD\|236938	PRK11621, PRK11621, Tat proofreading chaperone DmsD.	1.00273e-120

>NZ_CP011132.1|WP_099434124.1|1456280_1456364_-|hypothetical-protein
MVRRYRFEFILITLILCALIAARFYLS
>NZ_CP011132.1|WP_046480565.1|1455357_1456179_-|serine-protease
MRKTVAVLLGSLCFSSGIAHADKPDEDTGTSEVKTLFFGQDDRVPVSDPTQSPWDAIGQLETASGNLCTATLISPHLALTAGHCLLTPPKGKPDKAVVLRFVSKKGLWRYEIHGIEGRVDPGLGKRLKPDGDGWIVPPAAAPWDFGLVVLRYPPSGITPLPLFEGDKAALTAALKETGRKVTQSGYPEDHLDTLYSHQDCIVTGWAQNSVLSHQCDTLPGDSGSPLMLKTDAGWQLIGVQSSAPAAKDRWRADNRAISVTGFREKLDALAVEQ
>NZ_CP011132.1|WP_046480564.1|1454988_1455318_+|multidrug/spermidine-efflux-SMR-transporter-subunit-MdtI
MQQFEWVHAAWLGVSIVLEIIANVFLKFSDGFRRKLYGILSLVAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNHKGWIGVVLLLAGMVMIKLA
>NZ_CP011132.1|WP_162200263.1|1454636_1455002_+|multidrug/spermidine-efflux-SMR-transporter-subunit-MdtJ
MMFYWILLGLAIVAEITGTLSMKWASVSDGNSGFILMLVMIAASYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSAMKIAGLATLVLGIVLIKSGTRKSRQGAKEVTHATV
>NZ_CP011132.1|WP_046480560.1|1453187_1454222_-|AI-2E-family-transporter
MAKPIITLNGLKIVIMLGMLVIILTGIRFAADIIVPFILALFIAVVLSPLVQRMVKLRVPRVLAISLLVIIIVMAMVLLLAYLGTSLNELARTLPQYRSSLVIPLKNLEPWLVRSGIDVSVDEMVKYIDPNAAMTLITNLLTQLTNAMSSIFLLLLTVVFMLLEVPQLPTKFQQIMVRPVVGMAAIQRAIDSVSHYLVLKTAISLVTGLVVWGMLAALDVRFAFIWGLLAFALNYIPNIGSVLAAIPPIIQVLAFGGLYDALVVLAGYLIINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQSVGGQSIAILLGDVNKT
>NZ_CP011132.1|WP_046480558.1|1451750_1453139_+|Re/Si-specific-NAD(P)(+)-transhydrogenase-subunit-beta
MSGGLVTAAYIVAAILFIFSLAGLSKHETSQQGNNFGIAGMAIALIATIFGPDTGNVAWILVAMIIGGAIGIRLAKKVEMTEMPELVAILHSFVGLAAVLVGFNSYLYHEAGLEPILVNIHLTEVFLGIFIGAVTFTGSVVAFGKLRGKISSKPLMLPNRHKMNLAALVVSFLLLVVFVRTESVGLQVLALLVMTIIALAFGWHLVASIGGADMPVVVSMLNSYSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYIMCKAMNRSFISVIAGGFGTDGTASSGDEEVGEHREISAEDTADMLKNSHTVIITPGYGMAVAQAQYPVAEITEKLRARGIKVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQDDPNSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGVQNPLFFKENTHMLFGDAKASVDAILKAL
>NZ_CP011132.1|WP_046497835.1|1450210_1451740_+|Re/Si-specific-NAD(P)(+)-transhydrogenase-subunit-alpha
MRIGIPKERFTNETRVAATPKTVEQLLKLGFTVAVESGAGGLASFDDKAFVEAGAEIVDSSAVWQSEIILKVNAPEDEEIPLLNPGTTLVSFIWPAQNPELMQKLAERNVTVMAMDSVPRISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTGQITAAGKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSEAFIKAEMALFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEYTVANQVTTTANGVKVIGYTDLPGRLPTQSSQLYGTNLVNLLKLLCKEKDGNITVDFDDVVIRGVTVVRDGEITWPAPPIQVSAQPQAAAKAAPAAKEPEKPASPWRKYALMALAIVLFGWLADVAPKEFLGHFTVFALSCVVGYYVVWNVSHALHTPLMSVTNAISGIIVVGALLQIGQGGWVSFLSFIAVLIASINIFGGFTVTQRMLKMFRKN
>NZ_CP011132.1|WP_046480555.1|1448739_1449684_-|DUF1471-domain-containing-protein
MKLKNTLLASALLSATAFSVNAATELTPEQAAALKPYDRVTVTGRFNAIGDAVKAVNRRADKEGAASFYVVDTSDFGNSGNWRVVADFYKADAEKAEDSKNRVINGVVELPKSEAVMLEPFDTVTVQGFYRSQPEVNDAITKAAREKGAYSFYIVRQIDANQGGNQRITAFIYKEDAKKRVVQSPDAIPADSDAGRAALAAGGEAAKNVEIPGVATTASPSSEVGRFFETQSTKGGRYTVTLPDGTKVEELNKATAAMMVPFDSIKFTGNYSSMTDVSYQVAKRAAKQGAKYYHITRQWQERGNNMTISADLYK
>NZ_CP011132.1|WP_046480553.1|1447170_1448553_-|amino-acid-permease
MEKKLGLSALTALVLSSMLGAGVFSLPQNMAAVASPSALLIGWAITGAGILLLAFAMLILTRIRPELDGGIFTYAREGFGELIGFCSAWGYWLCAVIANVSYLVIVFSALSFFTDTPALRLFGDGNTWQAIVGASVLLWVVHFLVLRGVQTAASINLVATLAKLLPLGLFIVLAFMAFKLEVFSLDFTGIALGVPVWEQVKNTMLITLWVFIGVEGAVVVSARARNKHDVGRATLLAVLSALAVYLLVTLLSLGVVARPELAEIRNPSMAGLMVKMMGPWGEIIIAAGLIVSVCGAYLSWTIMAAEVPFLASTHKAFPRIFARQNAQGAPSASLWLTNLCVQVCLVLIWLTGSDYNTLLTIASEMILVPYFLVGAFLLKIATRPLHQAVGVGACIYGLWLLYASGPMHLLLSVVLYAPGLLVFLYARKTHTHDNVLNRQELVLIGLLLVAAVPATWLLVG
>NZ_CP011132.1|WP_046480552.1|1446389_1447112_-|dihydromonapterin-reductase
MGTQHPLPILVTGGGRRIGLAIAWHFLNQKQPVIVSYRTHYPAIDGLTQAGALCIQADFSTDEGILAFADTVKERASGLRAIVHNASAWMAEKPGTSLSDVLACMMQIHVNAPYLLNHALEGMLRGHGHAAGDIIHFTDYVVEKGSDKHIAYAASKAALDNMTRSFARKLAPEVKVNAIAPSLILFNEGDDAEYRQQALNKSLMKTAPGEKEVIDLIDYLLTSCFVTGRSFAVDGGRHLR
>NZ_CP011132.1|WP_046480567.1|1456934_1458419_-|carboxypeptidase-M32
MDNKSYQQLARTFLRLSRFSHLSAIASWDMFAMMPPGGSAARGEALAELSVLEHQILTEPKVAQWLAAAAEEDLNDVEQANLREMTWLHTQAALLPESLVEAKSLAGSRCEHAWRSQRPANDWQGFSVNLREVVKLSREEARLRAQIKGGSPYDALLDIYEPEMTSAQLDGLFADLKSWLPDLLSCVVARQSQQSLVAPVGPFPTAAQRELGLETMAVLGFDFNAGRLDISAHPFCGGVPQDVRITTRYDENELLSALFGVIHETGHARYEQNLPRHWLGQPVALARSTAIHESQSLFFEMQVGRSKAFLQRLLPAVKRHFGSQAAFEEQNFIAWNQRVKPGYIRVDADEVSYPAHVILRYEIERALINGDIEVDDIPALWDEKMQAWLGLSTKGNYRDGCMQDIHWTDGGFGYFPSYTLGAMYAAQLFSAANRALPDLGQQIASGDFSALFDWLRQNIWQHGSRFTAEQLITQATGEALSSRHFRAHLESRYL
>NZ_CP011132.1|WP_046480568.1|1458698_1459952_-|MFS-transporter
MSRTTTVNDATASDIDDQRISQPVQFIQRGTSAFMRVTLALFSAGLATFALLYCVQPILPVLSHEFGVSPASSSISLSISTGMLAVGLLFTGPLSDAIGRKPVMVTALLLASCCTLLSTMMTSWHGILVMRALIGLSLSGVAAVGMTYLSEEIHPSFVAFSMGLYISGNSIGGMSGRLISGVFTDFFSWRIALAAIGCFALASALMFWKILPESRHFRPTSLRPKTLFINFRLHWRDQGLPLLFAEGFLLMGSFVTLFNYIGYRLMLSPWELSQAVVGLLSVAYLTGTWSSPKAGSMTVRYGRGPVMLFSTAVMLVGLLMTLFSSLWLIFAGMLLFSAGFFGAHSVASSWIGPRARRAKGQASSLYLFSYYLGSSIAGTLGGVFWHNYGWNGVGGFIAIMLILAILVGTRLHHRLHV
>NZ_CP011132.1|WP_046480570.1|1460073_1460973_+|LysR-family-transcriptional-regulator
MNIELRHLRYFVAVAEELHFGRAAARLNMSQPPLSQQIQMLEQQVGARLLARTNRSVALTAAGKQFLADSRQILGLVNDAAARAERLHQGEAGELRIGFTSSAPFIRAVSDTLSLFRQKYPDMHLQTREMNTREQLAPLSEGALDLGLMRNTLLPESLHYEVILHEPLMAMIPRVYPLAQKPVVTLAELAKEPFVFFDPHVGTGLYDDILGMMRRYQLSPVITQEVGEAMTIIGLVAAGLGVSILPASFKKVQLNEMCWVPIAEEDAVSEMWLVWSAHHEQSQAARRFRQQLIQAVRGA
>NZ_CP011132.1|WP_046480571.1|1461101_1462322_+|ROK-family-transcriptional-regulator
MVADSQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGSRGRPAVGLVVETEAWHYLSIRISRGEIFLALRDLSSKLVVEECLELPLNDETPLLARIVTLVDQFFIRHQQKLERLTSIAITLPGIIDTENGVVHRMPFYADVKEMPLGDTLAQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVESVLELAQVRLAQSMSSSLHGQPLTVDSLCQAAMQGDLLAKDIISGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADVLFPAIADSIRQQALPAYSKNMVVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG
>NZ_CP011132.1|WP_046480573.1|1462447_1463143_+|ATP-dependent-dethiobiotin-synthetase-BioD
MLKRFFITGTDTSVGKTVVSRALLQALASGGKSVAGYKPVAKGSKETTEGFRNRDALVLQSVSTLELPYEAVNPIALSEDESSVAHSGPINYTLLSNGLASLSEKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALLTAQAIANDGLPLIGWVANRINPGLAHYAEIIDVLSKKLPAPLIGELPYLPRAEQRELGQYIRLSMLGSVLSVDRIMA
>NZ_CP011132.1|WP_046480574.1|1463221_1464370_-|osmoprotectant-ABC-transporter-ATP-binding-protein-OsmV
MIKLENLTKQFSQKNGQPLKAVDNVNLNVPEGEMCVLLGPSGCGKTTTLKMINRLITPSSGNILINGENTGEMDTVTLRRNIGYVIQQIGLFPNMTIEENITVVPRMLGWDKARCKRRAEELMEMVAMDAKKFLHRYPKEMSGGQQQRIGVIRALAADPPVLLMDEPFGAVDPINREVIQNQFLEMQRALKKTVMLVSHDIDEALKLGDRIAVFRQGRIVQCASPDELLAKPANDFVGSFVGQDRTLKRLLLVSAGDVTDRQPTLTAQPSTSLNEAFGIMDDNDIRAITVVDGEGKPLGFVKRREARQATGTCADIIHPFRITGKAEDNLRIVLSKLYESNTSWMPIVDEEGRYNGEISQDYIADYLSSGRTRRALNIHESS
>NZ_CP011132.1|WP_046480576.1|1464369_1465017_-|osmoprotectant-ABC-transporter-permease-OsmW
MDTIHYMIDNAGYLATLTFQHLWLVALAVGLAIVTGVPLGILIVRHKWLATPVLSAATLLLTIPSIALFGLMIPLFSLIGHGIGALPAITAVFLYSLLPIVRNTHTALDSIPPGLREAGRGIGMTFWQRLRWVEIPMALPVIFGGIRTAVVMNIGVMAIAAVIGAGGLGLLLLNGIGGSDIRMLIAGALMICLLAIVLDWLLHRLQVVLTPKGIR
>NZ_CP011132.1|WP_046480577.1|1465026_1465929_-|osmoprotectant-ABC-transporter-substrate-binding-protein-OsmX
MNLKNKWLGWLAAALLVSVQAQAAPIILATKSFTEQHILSAMTVQYLQKKGFQVQPQTNIATVISRNAMINKQIDMTWEYTGTSLIIFNHINERMSPQASYDTVKRLDAKLGLVWLKPADMNNTYAFAMQRKRAEAENINTMSEMVAKIEHIRQTDPDNNWLLGLDLEFAGRSDGMKPLQQAYQMSLDRPQIRQMDPGLVYNAVRDGFVDAGLIYTTDGRVKGFDLKVLEDDKGFFPSYAVTPVVRKDTLEANPGLAEALNTLSGQLNNDVISSLNAKVDIDHQSPQQVAREFLQQKNLL
>NZ_CP011132.1|WP_046480578.1|1465957_1466668_-|osmoprotectant-ABC-transporter-permease-OsmY
MHTSTLKRVLGFSFVIIALLALLIWGIGVETLKSRQVDLLYLGQQHLILVLTSMFFALLVGIPSGILLSRPAARGVAEYVMQIFNIGNTLPPLAVLALAMVIIGIGDMPAIVALFLASLLPIVRNTYAGLSSVPPSLIEAANGIGMTKWQRLRQVEIPNAWPVMLSGIRIATAINVGTAPLAFLIGASSYGELIFPGIYLNDFPTLILGATATALFALILDSLLAWLGRALSPHTA
>NZ_CP011132.1|WP_046480580.1|1466961_1467576_-|Tat-proofreading-chaperone-DmsD
MTDFTQRDDFTMTARVLGALFYYAPDSAEAAPLVSALTADDWQTQWPLATETLAPLATDFRRVSDESLPEAFQRLFVGPYALPSPPWGSVWLDRENVLFGESTLALRQWMRDNGIHVEATQNEPEDHFGSLLLMAAWLAESGRHSECEQLLAWHLFPWSSRFLDVFIENAGHPFYRALGELARHTLAQWQSQLLMPVAEKPLFR

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Crispr_ID: NZ_CP011132_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011132_5

2326355-2326457

Orphan

Consensus_repeat	Method
TCAGAATCTGACGGGTGAAAACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011132_5

>merge|NZ_CP011132|5|2326355-2326457|CRISPRCasFinder
TCAGATTCTGACGGGTGAAAACGCCATTTTTGTCAGAATCTGACGGGTGAAAACCGCTTGAACGTCCTGAATCTGACGGTTCAGATTTTGAAGGTTCAGAATC

>NZ_CP011132|5|5|2326355-2326457|CRISPRCasFinder
TCAGATTCTGACGGGTGAAAACG	CCATTTTTGTCAGAATCTGACGGGTGAAAACCGCTTGAACGTCCTGAATCTGACGGT
TCAGATTTTGAAGGTTCAGAATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011132.1\|WP_046481458.1\|2327464_2328172_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_CP011132.1\|WP_046481460.1\|2328744_2329164_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011132.1\|WP_046481457.1\|2327132_2327351_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|374243
NZ_CP011132.1\|WP_046481453.1\|2323275_2323641_-\|RusA-family-crossover-junction-endodeoxyribonuclease	unknown	unknown	gnl\|CDD\|377564
NZ_CP011132.1\|WP_046481464.1\|2330335_2330770_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011132.1\|WP_080949924.1\|2319397_2319673_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011132.1\|WP_046481462.1\|2329541_2329898_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011132.1\|WP_046481463.1\|2329897_2330149_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011132.1\|WP_032635108.1\|2326810_2327107_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011132.1\|WP_046481461.1\|2329351_2329552_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011132.1\|WP_046481455.1\|2325006_2325888_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|181180
NZ_CP011132.1\|WP_046481447.1\|2318435_2319005_-\|antirepressor	unknown	unknown	gnl\|CDD\|371128
NZ_CP011132.1\|WP_046481451.1\|2321656_2321869_+\|KTSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|379296
NZ_CP011132.1\|WP_046481454.1\|2323627_2325010_-\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|238484
NZ_CP011132.1\|WP_046498055.1\|2330810_2331329_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011132.1\|WP_046481450.1\|2320719_2321115_-\|phage-holin-family-protein	unknown	unknown	gnl\|CDD\|374892
NZ_CP011132.1\|WP_046481459.1\|2328544_2328748_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011132.1\|WP_046481452.1\|2322472_2323276_-\|antitermination-protein	unknown	unknown	gnl\|CDD\|367572
NZ_CP011132.1\|WP_046481449.1\|2320451_2320733_-\|phage-holin-family-protein	unknown	unknown	gnl\|CDD\|368449
NZ_CP011132.1\|WP_046481448.1\|2319679_2320294_-\|glycoside-hydrolase-family-19-protein	unknown	unknown	gnl\|CDD\|225720

Protein	Function_ID	Function_description	E-value
NZ_CP011132.1\|WP_046481458.1\|2327464_2328172_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	3.39527e-32
NZ_CP011132.1\|WP_046481455.1\|2325006_2325888_-\|ATP-binding-protein	gnl\|CDD\|181180	PRK07952, PRK07952, DNA replication protein DnaC; Validated.	5.66581e-35
NZ_CP011132.1\|WP_046481447.1\|2318435_2319005_-\|antirepressor	gnl\|CDD\|371128	pfam10547, P22_AR_N, P22_AR N-terminal domain. This domain was identified by Iyer and colleagues.	1.13736e-60
NZ_CP011132.1\|WP_046481453.1\|2323275_2323641_-\|RusA-family-crossover-junction-endodeoxyribonuclease	gnl\|CDD\|377564	pfam05866, RusA, Endodeoxyribonuclease RusA. This family consists of several bacterial and phage Holliday junction resolvase (RusA) like proteins. The RusA protein of Escherichia coli is an endonuclease that can resolve Holliday intermediates and correct the defects in genetic recombination and DNA repair associated with inactivation of RuvAB or RuvC.	2.46863e-11
NZ_CP011132.1\|WP_046481454.1\|2323627_2325010_-\|replicative-DNA-helicase	gnl\|CDD\|238484	cd00984, DnaB_C, DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.	9.5141e-98
NZ_CP011132.1\|WP_046481450.1\|2320719_2321115_-\|phage-holin-family-protein	gnl\|CDD\|374892	pfam16931, Phage_holin_8, Putative phage holin.	8.60343e-37
NZ_CP011132.1\|WP_046481451.1\|2321656_2321869_+\|KTSC-domain-containing-protein	gnl\|CDD\|379296	pfam13619, KTSC, KTSC domain. This short domain is named after Lysine tRNA synthetase C-terminal domain. It is found at the C-terminus of some Lysyl tRNA synthetases as well as a single domain in bacterial proteins. The domain is about 60 amino acids in length and contains a reasonably conserved YXY motif in the centre of the sequence. The function of this domain is unknown but it could be an RNA binding domain.	1.65712e-17
NZ_CP011132.1\|WP_046481452.1\|2322472_2323276_-\|antitermination-protein	gnl\|CDD\|367572	pfam03589, Antiterm, Antitermination protein.	2.07487e-29
NZ_CP011132.1\|WP_046481457.1\|2327132_2327351_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	1.71137e-12
NZ_CP011132.1\|WP_046481449.1\|2320451_2320733_-\|phage-holin-family-protein	gnl\|CDD\|368449	pfam05449, Phage_holin_3_7, Putative 3TM holin, Phage_holin_3. This is a family of putative proteobacterial phage three-transmembrane-domain holins.	3.81072e-24
NZ_CP011132.1\|WP_046481448.1\|2319679_2320294_-\|glycoside-hydrolase-family-19-protein	gnl\|CDD\|225720	COG3179, COG3179, Predicted chitinase [General function prediction only].	8.28131e-84

>NZ_CP011132.1|WP_046481455.1|2325006_2325888_-|ATP-binding-protein
MLNIKQREERDSLLTKREGLREELAFSVEHKKPWQWGNWESGEVHVVSCEKHGDYERMSLTGKAFRGAENVKHSQCPDCVKEELADIESGLRELRVADLMDNAGIARRFEACEFANYQAVNQDAAKNLAACQRYTTSWPDRLKAGTGLVMTGNCGTGKNHLAISMAKSIIRNHLASVEITDVMRLTRAVKNTWRHSAESTEDEVIERFSSLDLLIIDEVGVQFGSPTEMTILQEVVNARYESVLPTILISNLTFEQLKESIGERIVDRVTDGGRNRLAFGWESYRAIAGGVAA
>NZ_CP011132.1|WP_046481454.1|2323627_2325010_-|replicative-DNA-helicase
MMTPVWRNDDLEGAVIGAIFLRNTDPEVLGILSRLPASAFSVRQYREIYSGICRQARGIGVIDPLLLCETMPEHSATILESSRITWAKSALDYYVSTLERNAAIRDAEMVVEKALAGIRNASNGDNAVEALKSAQDAMAAISLTPDTVQPVHIDEVLTAVVERADARHQGLDVAKILLTGIDELDAKTGGIEQTDLVFIAARPSMGKTELALDIIDKVSEQGHGVLFFSMEMANIQIGERMVSAAGGMSVSRLKEVAKFQDEDWARLSTGVGRLTGRSVWMVDATDLTLEQIQQTATSHQIAHPETALVVIDYLLLIKIQSAARYDLAVGELSKGLKRLAKTNRTPVLALSQLSRGVESRQNKRPMNSDLKNSGEIEADADIIMMLYRDEVYNPESPAKGIAEINITKQRNGVLGTVYRRFYNGHFLPIDQEEAKRKSAPMPKSQPRRYSKGNQTGHADF
>NZ_CP011132.1|WP_046481453.1|2323275_2323641_-|RusA-family-crossover-junction-endodeoxyribonuclease
MQIFNITPMGKPRQTRADKWKTRPAVMRYRAFCDEVRLNKVVMPEAGSHITFVLPMPKSWSQKKRATMKGQAHQHKPDADNMIKALMDALFADDAHIWDFRVTKVWGETGQILISSIERAA
>NZ_CP011132.1|WP_046481452.1|2322472_2323276_-|antitermination-protein
MKLEASLKHFSPQGMHISDSVKGTSPDRITGTDVMAAIGTTSSRARFGLAAFFGKAGISKTDEQLAVQALARHAMDVAPKNVRKAAGGEFGWCMLVLAQFAFAEYSRSAATSVTCHACNGTGLIEGYEYVVKYPGLYNIDGDEIVAPKIECEQVKRLCTACNGKGKLEARCRCGGKGEVLDRIATKERGAPVFKTCERCSGNGFSSVPSTAVHKAILRRLPDLHVRTWTRNWKPFLESLVDICYQEERKADAAFQKATSFNDDANKF
>NZ_CP011132.1|WP_046481451.1|2321656_2321869_+|KTSC-domain-containing-protein
MLFQDVTSSKIKTIGYYPSEKILEIVFIASGTYQYVGVSAKTHKAFLEAKSKGRFFDGVIKDKYLCRKIG
>NZ_CP011132.1|WP_046481450.1|2320719_2321115_-|phage-holin-family-protein
MSDPVSGTTVAAGGLMGASMFGLATGIDYGVVFGAFAGAVFYVATAVNISRFKLVGYFITSFIFGVIGAPLLGSYFSKWTGYNDRPLDALGAVIVAAIAIKLLTFVNSQDLGSLFGILSRLRGGGTGNGNK
>NZ_CP011132.1|WP_046481449.1|2320451_2320733_-|phage-holin-family-protein
MVTNDPSAMINALICAVIVLVLMFYQRDGARHRPMVSMLAYFVVLVYASIPFRYLFGLYQESHWMVVIVNLIICAIVLRARGNLARLINILQK
>NZ_CP011132.1|WP_046481448.1|2319679_2320294_-|glycoside-hydrolase-family-19-protein
MKQSQFQQAAGISAGLAARWFPHIDAAMKEFGITAINDQAMFIAQVGHESAGFTSLVESFNYSVNGLKKTFGKRLTPYQCEMLGRVDGKQVAHQPQIANLVYGDRMGNNNPGDGWKYRGRGLLQITGRENYTKCGSALKLDLVSTPELLTQERHSARSAAWYFTLCGCLLHSGDVERVTQIINGGQNGIQDRRERYAKAKVALV
>NZ_CP011132.1|WP_080949924.1|2319397_2319673_-|hypothetical-protein
MGLEMIIGLAVAVLAAIAGAFGLGKSRGTNIAETKADQQRTEERAAATKAVAERRVETTKGARDVQQTVNHLPDDDVDRELWESWKRPGGR
>NZ_CP011132.1|WP_046481447.1|2318435_2319005_-|antirepressor
MNTITVPFHGNALYVVNRNGEPYTPMKPIIDGMGMDWASQFTKLKQRFKTSIVKITMQLPGDDQRREMICLPLRKLAGWLHTISPNKVKPEIRGKVIQYQKECDDVLYEYWTKGVVVNPRKSSVMEELNQACMEMKRDKGIASLFGTGLNEWKGVKAAHISKIKALVEDANGLIGYVLAETGKGKVTRT
>NZ_CP011132.1|WP_032635108.1|2326810_2327107_-|hypothetical-protein
MNHSDFVRKYSFDNPLQRLVMLRILMGGSMDGEGERVIDHQVLYEFCCCSKQAMFKEIKALERAGFLKVRKIGALDTGLAVRLEPARGYTITPVQEFV
>NZ_CP011132.1|WP_046481457.1|2327132_2327351_-|helix-turn-helix-domain-containing-protein
MKSAIERAIDAAGGVNALARAIGIKQPSVSRWRKVGVVGVDHVPDVAALTGIPAHELRPDKPKLFPPPGNGV
>NZ_CP011132.1|WP_046481458.1|2327464_2328172_+|helix-turn-helix-transcriptional-regulator
MQESKLKTLADRLNYAMSEMGMSQGQLAKAADMAQPTIWRITSGNARGTTKIVEIANALGVRSEWLSNGTGPMRADAQQPTSVITNKTDPNIFRVDVLDLTVSAGPGIINSEFVEVLRSVEYSVEDARQMFNGRKQEQIRIINVRGDSMSGTIEPGDLLFVDISVQHFDGDGIYAFIYDDTSHVKRLQKMKDKLLVISDNHTYRPWDPIEKEEMNKIFIFGKVIGSMPQTYRKHG
>NZ_CP011132.1|WP_046481459.1|2328544_2328748_+|hypothetical-protein
MVEPIKTFKGLSIRPCDAFKNISLITETASLLSAVDDDGYREISDVLFAFVCNYADEARKNESEKLK
>NZ_CP011132.1|WP_046481460.1|2328744_2329164_+|hypothetical-protein
MKTPLEMLNDIAAQISEGSTLLEMIYKNTEEMNEETDCGLACLIRSFDKTRETAYTYIEELAKGEKAVQPPIGNSDDIADDIFYATVSAAKLRELAHVYNESYFSGKDSDDADCLMASLIFDNTIKVHDLLKSIETKLN
>NZ_CP011132.1|WP_046481461.1|2329351_2329552_+|hypothetical-protein
MWDPSTDDSIEDVANSSRNLNELLDLMHLCFKEMNPLQTEQLLGLALNISSDIDIWVKAEEKRREK
>NZ_CP011132.1|WP_046481462.1|2329541_2329898_+|hypothetical-protein
MKNNTIEIYRRRIAIAALSRMKRKTGGYCLSVNMPDGNIQVIEINEESMSKLLQRFEKQARTEFAAEAETFIRQTYIKSVDINGHAEYLTETGKMIVDEIFAELIKHAKEKYVCGGIN
>NZ_CP011132.1|WP_046481463.1|2329897_2330149_+|hypothetical-protein
MTSQQTIMHGIQIPPPVLNVDLHVLPDFTGRVVLYIENGRVTCDRRLLDDEHICALDTFIEMAREMELRIEEVTGGTDSNSNT
>NZ_CP011132.1|WP_046481464.1|2330335_2330770_+|hypothetical-protein
MIDNRTASTIDLAFQIHHTPVGTLFVAMRHGRIKRCFSRDTAIRYLAFFMTTWAFEASGFMCRHPDVKVSHPVHGEAWERGGVTKEYHFAHQRCVRRLRRIFARKRDMQKWCEKWDAMHDRYVKEREELQSSKPAEVRNGSHSI
>NZ_CP011132.1|WP_046498055.1|2330810_2331329_+|hypothetical-protein
MIGYSAAIRQLDNGHYDKNIAEGMELLACIMEAVESNWITLNIDKQIIVWRWLLAAVFIAEEQEKNGTVEVPNDEGGVDTAVIYSGKQGAISVYPGPERFALANHIEAGAIEKYGPAVGQQLALRMYQDMVVADDESGFKLSAMGREGFNLLHDSFIEQIQTEGMPDMPIMH

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Crispr_ID: NZ_CP011132_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011132_6

2469255-2469452

Orphan

Consensus_repeat	Method
CCATCAGGCTATTTCCCAGTGCCGGATGACGGCATAAATGCCTTATCCGGCC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP011132_6

>merge|NZ_CP011132|6|2469255-2469452|PILER-CR
CCATGCCGGATGACGGCATAAATGCCTTATTCGGCCTACGGGTGAGATGTTTTCGTAGGCCTGATAAGCGAAGCGCCATCAGGCTATTTCCCCGTGCCGGATGACGGCATTCGGGGTCTGGCTTTGTAGGCCTGATAAGCAAAGCGCCATCAGGCTATTTTCCAGTGCCGGATGACGGCATAAATGCCTTATCCGGCC

>NZ_CP011132|6|1|2469255-2469452|PILER-CR
CCATGCCGGATGACGGCATAAATGCCTTATTCGGCCTACGGGTGAGATGTTT	TCGTAGGCCTGATAAGCGAAGCGCCATCAGGCTATTTCC
CCGTGCCGGATGACGGCATTCGGGGTCTGGCTTTGTAGGCCTGATAAGCAAA	GCGCCATCAGGCTATTTTCCAGTGCCGGATGACGGC
ATAAATGCCTTATCCGGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011132.1\|WP_046481579.1\|2459079_2459811_+\|HTH-type-transcriptional-regulator-MlrA	unknown	unknown	gnl\|CDD\|185003
NZ_CP011132.1\|WP_046481577.1\|2457168_2458857_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP011132.1\|WP_046481603.1\|2475827_2476472_-\|maleylacetoacetate-isomerase	unknown	unknown	gnl\|CDD\|273527
NZ_CP011132.1\|WP_046481591.1\|2468688_2469243_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|224168
NZ_CP011132.1\|WP_046481608.1\|2478245_2479604_-\|aromatic-acid/H+-symport-family-MFS-transporter	unknown	unknown	gnl\|CDD\|273327
NZ_CP011132.1\|WP_046481595.1\|2470622_2471210_-\|YIP1-family-protein	unknown	unknown	gnl\|CDD\|369140
NZ_CP011132.1\|WP_046481593.1\|2469509_2470457_-\|D-alanyl-D-alanine-endopeptidase	unknown	unknown	gnl\|CDD\|236952
NZ_CP011132.1\|WP_046481604.1\|2476480_2477182_-\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP011132.1\|WP_046481597.1\|2471373_2471949_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP011132.1\|WP_046481601.1\|2474619_2475813_-\|3-hydroxybenzoate-6-monooxygenase	unknown	unknown	gnl\|CDD\|181262
NZ_CP011132.1\|WP_046481580.1\|2459958_2460690_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224095
NZ_CP011132.1\|WP_046481582.1\|2460673_2461621_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224050
NZ_CP011132.1\|WP_046481590.1\|2466853_2468575_+\|D-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|236872
NZ_CP011132.1\|WP_042318015.1\|2459870_2459978_+\|protein-YohO	unknown	unknown	gnl\|CDD\|184238
NZ_CP011132.1\|WP_046481600.1\|2473524_2474463_-\|tRNA-dihydrouridine(16)-synthase-DusC	unknown	unknown	gnl\|CDD\|236713
NZ_CP011132.1\|WP_046481588.1\|2464339_2466637_-\|beta-glucosidase-BglX	unknown	unknown	gnl\|CDD\|185053
NZ_CP011132.1\|WP_046481584.1\|2461613_2462780_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224095
NZ_CP011132.1\|WP_046481598.1\|2471939_2473379_-\|multidrug-resistance-outer-membrane-protein-MdtQ	unknown	unknown	gnl\|CDD\|183143
NZ_CP011132.1\|WP_046481586.1\|2462795_2463713_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270334
NZ_CP011132.1\|WP_046481606.1\|2477196_2478234_-\|gentisate-1,2-dioxygenase	unknown	unknown	gnl\|CDD\|131325

Protein	Function_ID	Function_description	E-value
NZ_CP011132.1\|WP_046481579.1\|2459079_2459811_+\|HTH-type-transcriptional-regulator-MlrA	gnl\|CDD\|185003	PRK15043, PRK15043, HTH-type transcriptional regulator MlrA.	1.5701e-172
NZ_CP011132.1\|WP_046481577.1\|2457168_2458857_-\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	0
NZ_CP011132.1\|WP_046481603.1\|2475827_2476472_-\|maleylacetoacetate-isomerase	gnl\|CDD\|273527	TIGR01262, Maleylacetoacetate_isomerase, maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism. [Energy metabolism, Amino acids and amines].	1.86357e-114
NZ_CP011132.1\|WP_046481591.1\|2468688_2469243_+\|N-acetyltransferase	gnl\|CDD\|224168	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane].	1.93758e-54
NZ_CP011132.1\|WP_046481608.1\|2478245_2479604_-\|aromatic-acid/H+-symport-family-MFS-transporter	gnl\|CDD\|273327	TIGR00895, transport_protein, benzoate transport. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	8.52637e-104
NZ_CP011132.1\|WP_046481595.1\|2470622_2471210_-\|YIP1-family-protein	gnl\|CDD\|369140	pfam06930, DUF1282, Protein of unknown function (DUF1282). This family consists of several hypothetical proteins of around 200 residues in length. The function of this family is unknown although a number of family members are thought to be putative membrane proteins.	4.11149e-30
NZ_CP011132.1\|WP_046481593.1\|2469509_2470457_-\|D-alanyl-D-alanine-endopeptidase	gnl\|CDD\|236952	PRK11669, pbpG, D-alanyl-D-alanine endopeptidase; Provisional.	0
NZ_CP011132.1\|WP_046481604.1\|2476480_2477182_-\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	4.93717e-91
NZ_CP011132.1\|WP_046481597.1\|2471373_2471949_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	3.40234e-44
NZ_CP011132.1\|WP_046481601.1\|2474619_2475813_-\|3-hydroxybenzoate-6-monooxygenase	gnl\|CDD\|181262	PRK08163, PRK08163, 3-hydroxybenzoate 6-monooxygenase.	0
NZ_CP011132.1\|WP_046481580.1\|2459958_2460690_-\|ABC-transporter-permease	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	6.12431e-70
NZ_CP011132.1\|WP_046481582.1\|2460673_2461621_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	2.0071e-172
NZ_CP011132.1\|WP_046481590.1\|2466853_2468575_+\|D-lactate-dehydrogenase	gnl\|CDD\|236872	PRK11183, PRK11183, D-lactate dehydrogenase; Provisional.	0
NZ_CP011132.1\|WP_042318015.1\|2459870_2459978_+\|protein-YohO	gnl\|CDD\|184238	PRK13681, PRK13681, protein YohO.	9.68844e-06
NZ_CP011132.1\|WP_046481600.1\|2473524_2474463_-\|tRNA-dihydrouridine(16)-synthase-DusC	gnl\|CDD\|236713	PRK10550, PRK10550, tRNA dihydrouridine(16) synthase DusC.	0
NZ_CP011132.1\|WP_046481588.1\|2464339_2466637_-\|beta-glucosidase-BglX	gnl\|CDD\|185053	PRK15098, PRK15098, beta-glucosidase BglX.	0
NZ_CP011132.1\|WP_046481584.1\|2461613_2462780_-\|ABC-transporter-permease	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	4.18366e-69
NZ_CP011132.1\|WP_046481598.1\|2471939_2473379_-\|multidrug-resistance-outer-membrane-protein-MdtQ	gnl\|CDD\|183143	PRK11459, PRK11459, multidrug resistance outer membrane protein MdtQ; Provisional.	0
NZ_CP011132.1\|WP_046481586.1\|2462795_2463713_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270334	cd13616, PBP2_OsmF, Substrate-binding domain OsmF of an osmoregulated ABC-type transporter; the type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein OsmF of an ABC transporter (YehZYXW) from Escherichia coli is predicted to be involved in uptake of compatible solutes such as choline, L-proline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. OsmF belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.89786e-170
NZ_CP011132.1\|WP_046481606.1\|2477196_2478234_-\|gentisate-1,2-dioxygenase	gnl\|CDD\|131325	TIGR02272, gentisate_12-dioxygenase, gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.	0

>NZ_CP011132.1|WP_046481591.1|2468688_2469243_+|N-acetyltransferase
MSVADTLSDNDIKVRDALPDDVEAISSLYAWHVLNGRASFEETPPTVDEMRRRMRTVAQYGLPWLVALYRGVIVGYCYATQYRPRPAYRFTLEESIYVDASMTGRGVGSLLMHTLITRCEEGPWRQMVAVIGDGHNNPGSLRLHKKHGFEIAGQLRSVGYKKGDWRDTLIMQRPLNEGDWTLPE
>NZ_CP011132.1|WP_046481590.1|2466853_2468575_+|D-lactate-dehydrogenase
MSSITTTDNKTFLNELARLVGHSHLLTDPAKTARYRKGFRSGQGDALAVVFPGSLLELWRVLNACVNADKIILMQAANTGLTEGSTPNGNDYDREVVIISTLRLDKLHVLGKGEQVLAYPGTTLYSLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGSLVQRGPAYTEMSLFARIDENGKLQLVNHLGIDLGQTPEQILSQLDDERIKEENVRHDGRHAHDHDYVTRVRDIDADTPARYNADPDRLFESSGCAGKLAVFAVRLDTFEAEKNQQVFYIGTNQPEVLTEIRRHILATFDNLPVAGEYMHRDIYDIAEQYGKDTFLMIDKLGTDKMPFFFTLKGRTDAMLEKVKFFRPHFTDRAMQKFGHLFPSHLPPRMKSWRDKYEHHLLLKMAGDGVAEAQSWLTEFFKTAEGDFFACTPEEGSKAFLHRFAAAGAAIRYQAVHADEVEDILALDIALRRNDTEWYEHLPAEMDNQLVHKLYYGHFMCYVFHQDYIVKKGVDAHALKAQMLELLQQRGAQYPAEHNVGHLYEAPATLTRFYRENDPTNSMNPGIGKTSKQKFWKVPSSD
>NZ_CP011132.1|WP_046481588.1|2464339_2466637_-|beta-glucosidase-BglX
MKWLCSVGVAVSLALQPALAEELFGNHPLTPEARDAFVTQLLTKMTVDEKIGQLRLISVGPDNPKEAIREMIKDGQVGAIFNTVTRQDIRKMQDQVMELSRLKIPLFFAYDVLHGQRTVFPISLGLASSFNLDAVKTVGRISAYEAADDGLNMTWAPMVDVSRDPRWGRASEGFGEDTYLTSIMGKTMVEAMQGKSPADRYSVMTSVKHFAAYGAVEGGKEYNTVDMSPQRLFNDYMPPYKAGLDAGSGAVMVALNSLNGTPATSDSWLLKDILRDKWGFKGITVSDHGAIKELIKHGTAADPEDAVRVALKSGINMSMSDEYYSKYLPGLIKSGKVTMAELDDAARHVLNVKYDMGLFNDPYSHLGAKETDPVDTNAESRLHRKEAREVARESLVLLKNRLDTLPLKKSGTIAVVGPLADSKRDVMGSWSAAGVADQSITVLTGIKNALGANGKVVYAHGANVTNDKDIVTFLNQYEEAVKVDSRSPQEMIDEAVAAAKQSDVVVAVVGEAQGMAHEASSRTDITLPQSQRDLIAALKATGKPLILVLMNGRPLALVKEDQQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSFPRSVGQIPTYYSHLNTGRPYNADKPNKYTSRYFDEANGPLYPFGYGLSYTTFNVSDVTLSAPTMKRDGSVTASVKVTNTGKREGETVIQLYVQDVTASLSRPVKELKGFKKVNLKPGETQTVSFPIDINALKFWNQQMTFDAEPGKFNVFIGVDSARVKQGSFELL
>NZ_CP011132.1|WP_046481586.1|2462795_2463713_-|ABC-transporter-substrate-binding-protein
MTISKIWAGSLALLAAVSLPLQAASPVKVGSKIDTEGALLGNIILQVLESHGVKTVNKVQLGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDPAWKNAKEGFEKVKKLDAEQNKLVWLTPAPANNTWTIAVRSDVAEKNKLTSLADLSRYLKEGGTFKLAASAEFIERADALPAFEKAYGFTLGQAQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPKGVQPIYAPAPVVREAVLKAYPQMAEWLQPVFASLDEKTLQQLNASIAVEGLDAKKVAADYLKQKGWVK
>NZ_CP011132.1|WP_046481584.1|2461613_2462780_-|ABC-transporter-permease
MGDVSKVSIQRVLLLLVVLSAAAVALPFVNYAPNRLVSGEGRQLWTLWPGSLSMLTGAGCVLLALCFVPGRKGAWCTLVVTQLLVILMLWSVGKAATHLAATGTPLARTSVGSGLWLGLALGLLACSDAIRRITVQPLWRWVLHAQMAIIPVALLLTGTFDDLSLLKEYANRQDVFDDALTQHLTLLLGTVLPALAIGIPLGIWCYFSTARQGLVFTVLNVIQTVPSVALFGLLIAPLAGLVNAFPWLATVGVAGTGLTPALIALVLYALLPLVRGVVAGLNQVPRDVQESARAMGMSTAQRFLHVQLPLALPVFLRSLRVVMVQTVGMAVIAALIGAGGFGALVFQGLLSSAVDLVLLGVIPVIALAVLIDALFDLGIALLKVTHHD
>NZ_CP011132.1|WP_046481582.1|2460673_2461621_-|ABC-transporter-ATP-binding-protein
MIEFSHVNKAFGEHNAVSDLNLHVKEGSFSVLIGTSGSGKSTTLKMINRLVEHDSGIIRFAGEEIRRLPVLELRRRMGYAIQSIGLFPHWTVAQNIATVPQLLKWPRRKIDERVEELMALLGLETGLRERYPHQLSGGQQQRVGVARALAADPQVLLMDEPFGALDPVTRGALQQEMTRIHRLLGRTIVLVTHDIDEALRLAEHLVLMDGGNVVQQGTPLAMLTAPANDFVQQFFGRSELGVRLLSLRTVADYVRRDEQIAGEALTEEMTLRDALSAFVARGCDVLPVVNQQGGVCGTLHFRDLLLETLTHETAV
>NZ_CP011132.1|WP_046481580.1|2459958_2460690_-|ABC-transporter-permease
MKRLCDPLIWLIALFLLMLLGLPHSQTIFASLFPELPRPVYQQESFLALALAHFWLVAVSSLFAVVIGVGAGMVVTRPWGREFRPLVETIAAVGQTFPPVAVLAIAVPVMGFGQQPAILALILYGVLPILQATLAGLGSIADSVRSIASGMGMSPGQQLRKVELPLAAPVILAGVRTSVIINIGTATIASTVGASTLGTPIIIGLSGFNTAYVIQGALLVALAAIIVDRLFERLVLHLSRHAK
>NZ_CP011132.1|WP_042318015.1|2459870_2459978_+|protein-YohO
MSVAKIGVITLFLLMAIGGIGGVMLAGYTFILRAG
>NZ_CP011132.1|WP_046481579.1|2459079_2459811_+|HTH-type-transcriptional-regulator-MlrA
MALYTIGEVALLCDINPVTLRAWQRRYGLLKPQRTDGGHRLFNDSDIDRIREIKRWIDNGVQVGKVKMLLSNENVDLQNGWREQQETLLHYLQNNNLHSLRIWLKERGQDYPAQTLTTHLFLPLRRRLQCQQPTLLALLGILDGVLINYIAICLASARKKQGKDALVVGWNIHDTTRLWLEGWVASQQGWRVDVLAHSLSQFRPDLFEGRTLLVWCGENQTSAQQQQLNTWRAEGHDIYPLGI
>NZ_CP011132.1|WP_046481577.1|2457168_2458857_-|sensor-histidine-kinase
MYDFNLVLLLLQQMCVFLVIAWLMSKTRLFIPLMQVTVRLPHKLLCYVTFSIFCILGTYFGLHIDDSIANTRAIGAVMGGLLGGPVVGGLVGLTGGLHRYSMGGMTALSCMISTIVEGLLGGLVHSVLTRRGRTDKVFNPLTAGAITFVAEMVQMLIILLIARPFDDAYRLVSNIAAPMMVTNTVGAALFMRILLDKRAMFEKYTSAFSSTALKVAASTEGILRQGFNEVNSMKVAQVLYQELDIGAVAITDRERLLAFTGIGDDHHLPGRPISSSYTLRAIETGEVVYADGNEVPYRCSLHPQCKLGSTLVIPLRGENQRVMGTIKLYEAKNRLFSSINRTLGEGIAQLLSAQILAGQYERQKAMLTQSEIKLLHAQVNPHFLFNALNTIKAVVRRDSEQASQLVQDLSTFFRKNLKRPSEIVTLADEIEHVNAYLQIEKARFQARLQVSLNVPDALAHQQLPAFTLQPIVENAIKHGTSQLMGTGEVSITARQEGQYLMLDIEDNAGLYQPTTNVSGLGMNLVDKRLRERFGDDYGISVVCEPDCFTRITLRLPLEETHD
>NZ_CP011132.1|WP_046481593.1|2469509_2470457_-|D-alanyl-D-alanine-endopeptidase
MLKFRVSILSLALMLAVPFAPQALAKTAATAAASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDARLPLDEKLKVDISQTPEMKGIYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFIKAMNAKAKALGMTQTRFVEPTGLSIHNVSTARDLTKMLIASKQYPLIGQLSTTREDMATFANPAYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTWIETGKVMPVPAAALSYKKQKAAQMAAAGGNAGEQTAQND
>NZ_CP011132.1|WP_046481595.1|2470622_2471210_-|YIP1-family-protein
MNHVWGLFSHPNREMQVINSENETVSHHYTHHVLLMAAIPVICAFIGTTQIGWNFGDGTILKLSLFTGLALAILFYAVMLAGVAIMGRVIWWMARGYPQRPSLTHCMVFAGYVATPLFLSGLVALYPLVWLCAFIGTIALFYTGYLLYLGIPTFLNINKEEGLSFSSSTLAIGVLVLEVLLALTVILWGYGYRLF
>NZ_CP011132.1|WP_046481597.1|2471373_2471949_+|DedA-family-protein
MDINSLIAQYGYAALVIGSLAEGETITLLGGVAAHQGLLKFPLVVVAVALGGMIGDQLLYLLGRRYGGRILRRFARHRNKIRQAQKMIQRRPYLFVIGTRFMYGFRVIGPLLIGASHLPPKIFLPLNILGALVWALIFTTLGYVGGEVIAPWLHHLDQHLKHWIWLILAVVLVIGARWWLKRRSKAKMSQE
>NZ_CP011132.1|WP_046481598.1|2471939_2473379_-|multidrug-resistance-outer-membrane-protein-MdtQ
MTRNSFHALNACFPLAILLAGCAPMHDTQQTLVQQPPASHVDSALPSALNNGWPGSQWWQDYHDAQLNELVKNALASSPDMQVAEQRIALAEAQANAVEARDGPQVDFSADAERQKMSGEGVMGPFAVTDPAAGTTGPWYTNGTFGLTAGWDLDLWGKNRAEVTARIGAVKAREAEREQTRQLLASGVTRLYWEWQTEAALSKLLTEIEQEQRNIIDTDRQLYQNGITSSVEGVETDIDDSKTQQQLNDIAGKMKVIEARLSALTNTQSTSLKLHAVNLPQVESQLPTQLGYALLARRADLQAAHWVIESSMSSVEAAKAAFYPDINLMAFLQQDALHLSDLFRSSAQQMGVTAGLTLPIFDSGRLNANLDIAQAQNNLSIASYNKAVVDAVNDVARTASQVATLMQKNQHQQQIEHDAERVVSLAQARFDAGIIAGSLVSKARIPALREQANGLILQGQWLDASIQLTSALGGGYHHS
>NZ_CP011132.1|WP_046481600.1|2473524_2474463_-|tRNA-dihydrouridine(16)-synthase-DusC
MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRLCPELLNGSRTPSGTLVRVQLLGQYPQWLAENAARAVELGSYGVDLNCGCPSKMVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGDKKFEIADAVQQAGASELVVHGRTKEQGYKAEHINWQAIGEIRERLSIPVIANGEIWDWQSAQECLAVSGCDAVMIGRGALNIPNLSRVVKYNEPRMPWPQVVALLKKYTRLEKQGDTGLYHVARIKQWLGYLRKEYREATDVFQDIRALNNSPDIARAIQSIEI
>NZ_CP011132.1|WP_046481601.1|2474619_2475813_-|3-hydroxybenzoate-6-monooxygenase
MAKVTRAIIVGGGIGGAATALSLARQGIKVMLLEKAHEIGEIGAGIQLGPNAFSALDSLGVGEVARSRAVFTDHITMMDAVNAEEVVRIETGQAFRDHFGGPYAVIHRVDIHASVWESVLTHPNVEYRTSTNVVDIRQTADDVTVFDEQGNSWTADILVGCDGVKSVVRQSLLGDSPRVTGHVVYRAVIDCADMPEDLRINAPVLWAGPHCHLVHYPLRGGKQYNLVVTFHSRQQEEWGVKDGSKEEVLSYFAGIHPRPRQMLDKPTTWRRWSTADREPVEKWGTERITLVGDAAHPVAQYMAQGACMALEDAVTLGKALAQCDGDAAKAFALYESVRIPRTARIVWSTREMGRVYHAAGVERQVRNLLWKGKSQAEFYRGMEWLYGWKEDNCLLPR
>NZ_CP011132.1|WP_046481603.1|2475827_2476472_-|maleylacetoacetate-isomerase
MKLYSFFNSSASYRVRIALALKGIDYQTVGVNIRIGQQNELAYRRMNPVGLVPTLVTDDGEALGQSLAIIDWLDRHFPQSRLLPVSDPARTQVLEIVYAIACDIHPVNNLRVLRYLSEELKVSEEEKKRWYAHWIQQGLSAVEQLLRQSQSQNYCVGNAPTLADCCLVPQWANALRMGCDLSDYPRCKAVYDACTQLPAFIAAAPENQQDKISA
>NZ_CP011132.1|WP_046481604.1|2476480_2477182_-|fumarylacetoacetate-hydrolase-family-protein
MTQYVFAPQAPVTVPVVGSDAQFPVRRVYCVGRNYAAHAREMGFDPDREPPFFFCKPADAVVPVAAGETLALPYPAQTDNYHYEIELVVAIGKKGGDIPLEKAHEYIWGYATGLDMTRRDRQMEMRQMGRPWEIGKAFDLSAPIAPLHKADEIADITSAPIWLQVNGNDHQRSDIRHLIWSVNETISYLSGFFELQPGDLIFTGTPEGVGAVVKGDVITGGVDGLTPLSVKIV
>NZ_CP011132.1|WP_046481606.1|2477196_2478234_-|gentisate-1,2-dioxygenase
MSEQNQDVKNSRQQFYQHISGQNLTPLWESLHHLVPKTPNPTCAPAYWNYQEIRPLLLESGNLIGAKEAIRRVLVLENPMLRGQSSITSTLYAGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVDGERTQMHTGDFILTPQWQWHDHGNPGDEPVVWLDGLDLPLVNLLGCGFAEDYPEDQQPVSRKEGDYLPRYAANMLPLRHQKGNSSPIFNYRYDRSREALHDLTRLGDADEWDGYKMRYVNPVTGGYPMPSMGTFLQLLPKGFTSRVARTTDSTIYHVVEGAGEVTVGNETFRFSAKDIFVVPTWRGVSFKTTDETVLFSFSDRPVQEALGLFREARD
>NZ_CP011132.1|WP_046481608.1|2478245_2479604_-|aromatic-acid/H+-symport-family-MFS-transporter
MTQRRELQALIDAAPVSKTQWRVIICCFLVVMLDGFDTAAIGFIAPDIRTHWQLTAADLAPLFGAGLLGLTAGALLCGPLSDRFGRKRVIELCVALFGALSLISAFSPDLQTLVILRFLTGLGLGGAMPNTITMTSEYLPARRRGALVTLMFCGFTLGSAMGGIVSAQLVPVIGWHGILVLGGVLPLMLFFVLLAVLPESPRWQVRRQLPQATIARTVSAITGERYDNTQFYLQEAAAIAKGSIRQLFVGRQLPITLMLWVVFFMSLLIIYLLSSWMPTLLNHRGIDLQQASWVTAAFQVGGTLGALALGVLMDKHNPFRVLAVSYALGAVCIVMIGLSENGLWLMALAIFGTGVGISGSQVGLNALTATLYPTQSRATGVSWSNAVGRCGAIVGSLSGGVMMAMNFSFDTLFFIIAVPAIISAVMLAVLTVVVRQSASVPDVLPHASVVNE

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Crispr_ID: NZ_CP011132_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011132_7

2556587-2556699

Orphan

Consensus_repeat	Method
TGTAGGCCTGATAAGCGCAGCGCCATCAGGCAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011132_7

>merge|NZ_CP011132|7|2556587-2556699|CRISPRCasFinder
TGTAGGCCTGATAAGCGCAGCGCCATCAGGCAACAGGTGGATGGCGGCTGATGCCTTATCCGGCCTACCTTCTTGCTCTTGTAGGCCTGATAAGCACAGCGCCATCAGGCAAC

>NZ_CP011132|7|6|2556587-2556699|CRISPRCasFinder
TGTAGGCCTGATAAGCGCAGCGCCATCAGGCAAC	AGGTGGATGGCGGCTGATGCCTTATCCGGCCTACCTTCTTGCTCT
TGTAGGCCTGATAAGCACAGCGCCATCAGGCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011132.1\|WP_046481691.1\|2548168_2549116_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NZ_CP011132.1\|WP_042317911.1\|2556702_2557362_-\|heme-exporter-protein-CcmB	unknown	unknown	gnl\|CDD\|200083
NZ_CP011132.1\|WP_046481703.1\|2555756_2556494_-\|heme-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|273492
NZ_CP011132.1\|WP_046481714.1\|2563095_2563359_-\|chaperone-NapD	unknown	unknown	gnl\|CDD\|182542
NZ_CP011132.1\|WP_046481698.1\|2553131_2555075_-\|heme-lyase-CcmF/NrfE-family-subunit	unknown	unknown	gnl\|CDD\|129451
NZ_CP011132.1\|WP_046481692.1\|2549115_2550660_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011132.1\|WP_046481706.1\|2558002_2558605_-\|cytochrome-c-type-protein-NapC	unknown	unknown	gnl\|CDD\|182590
NZ_CP011132.1\|WP_046498086.1\|2564248_2564746_+\|serine-protease-inhibitor-ecotin	unknown	unknown	gnl\|CDD\|226940
NZ_CP011132.1\|WP_046481707.1\|2558614_2559064_-\|nitrate-reductase-cytochrome-c-type-subunit	unknown	unknown	gnl\|CDD\|183214
NZ_CP011132.1\|WP_046481704.1\|2557358_2557979_-\|cytochrome-c-biogenesis-heme-transporting-ATPase-CcmA	unknown	unknown	gnl\|CDD\|184125
NZ_CP011132.1\|WP_046481716.1\|2563348_2563840_-\|ferredoxin-type-protein-NapF	unknown	unknown	gnl\|CDD\|182296
NZ_CP011132.1\|WP_046481711.1\|2559910_2560606_-\|ferredoxin-type-protein-NapG	unknown	unknown	gnl\|CDD\|236534
NZ_CP011132.1\|WP_046481697.1\|2552577_2553135_-\|thiol:disulfide-interchange-protein-DsbE	unknown	unknown	gnl\|CDD\|185310
NZ_CP011132.1\|WP_046481700.1\|2555071_2555551_-\|cytochrome-c-maturation-protein-CcmE	unknown	unknown	gnl\|CDD\|183874
NZ_CP011132.1\|WP_046481709.1\|2559060_2559924_-\|quinol-dehydrogenase-ferredoxin-subunit-NapH	unknown	unknown	gnl\|CDD\|236535
NZ_CP011132.1\|WP_046481713.1\|2560612_2563099_-\|nitrate-reductase-catalytic-subunit-NapA	unknown	unknown	gnl\|CDD\|237416
NZ_CP011132.1\|WP_046481694.1\|2550836_2551484_+\|nitrate/nitrite-response-regulator-protein-NarP	unknown	unknown	gnl\|CDD\|182431
NZ_CP011132.1\|WP_046481701.1\|2555547_2555760_-\|heme-exporter-protein-CcmD	unknown	unknown	gnl\|CDD\|225656
NZ_CP011132.1\|WP_046481695.1\|2551528_2552581_-\|cytochrome-c-type-biogenesis-protein-CcmH	unknown	unknown	gnl\|CDD\|226687
NZ_CP011132.1\|WP_046481690.1\|2547809_2548172_+\|GtrA-family-protein	unknown	unknown	gnl\|CDD\|225155

Protein	Function_ID	Function_description	E-value
NZ_CP011132.1\|WP_046481691.1\|2548168_2549116_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	5.34215e-82
NZ_CP011132.1\|WP_042317911.1\|2556702_2557362_-\|heme-exporter-protein-CcmB	gnl\|CDD\|200083	TIGR01190, Heme_exporter_protein_B, heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other].	1.11249e-85
NZ_CP011132.1\|WP_046481703.1\|2555756_2556494_-\|heme-ABC-transporter-permease	gnl\|CDD\|273492	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC. This model describes the cyt c biogenesis protein encoded by ccmC in bacteria. It must be noted an arabidopsis, a tritcum and a piscum plant proteins were recognizable in the clade. Quite likely they are of organellar origin. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes, ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in the heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other].	3.82009e-91
NZ_CP011132.1\|WP_046481714.1\|2563095_2563359_-\|chaperone-NapD	gnl\|CDD\|182542	PRK10553, PRK10553, chaperone NapD.	1.19649e-44
NZ_CP011132.1\|WP_046481698.1\|2553131_2555075_-\|heme-lyase-CcmF/NrfE-family-subunit	gnl\|CDD\|129451	TIGR00353, Cytochrome_c-type_biogenesis_protein_CcmF, c-type cytochrome biogenesis protein CcmF. The product of this gene is required for the biogenesis of C-type cytochromes. This gene is thought to have eleven transmembrane helices. Disruption of this gene in Paracoccus denitrificans, encoding a putative transporter, results in formation of an unstable apocytochrome c and deficiency in siderophore production. [Energy metabolism, Electron transport].	0
NZ_CP011132.1\|WP_046481700.1\|2555071_2555551_-\|cytochrome-c-maturation-protein-CcmE	gnl\|CDD\|183874	PRK13165, PRK13165, cytochrome c maturation protein CcmE.	2.26939e-104
NZ_CP011132.1\|WP_046481706.1\|2558002_2558605_-\|cytochrome-c-type-protein-NapC	gnl\|CDD\|182590	PRK10617, PRK10617, cytochrome c-type protein NapC; Provisional.	1.11828e-157
NZ_CP011132.1\|WP_046498086.1\|2564248_2564746_+\|serine-protease-inhibitor-ecotin	gnl\|CDD\|226940	COG4574, Eco, Serine protease inhibitor ecotin [General function prediction only].	1.38711e-102
NZ_CP011132.1\|WP_046481707.1\|2558614_2559064_-\|nitrate-reductase-cytochrome-c-type-subunit	gnl\|CDD\|183214	PRK11586, napB, nitrate reductase cytochrome c-type subunit.	9.2228e-107
NZ_CP011132.1\|WP_046481704.1\|2557358_2557979_-\|cytochrome-c-biogenesis-heme-transporting-ATPase-CcmA	gnl\|CDD\|184125	PRK13538, PRK13538, cytochrome c biogenesis heme-transporting ATPase CcmA.	1.30509e-123
NZ_CP011132.1\|WP_046481716.1\|2563348_2563840_-\|ferredoxin-type-protein-NapF	gnl\|CDD\|182296	PRK10194, PRK10194, ferredoxin-type protein NapF.	5.79357e-98
NZ_CP011132.1\|WP_046481711.1\|2559910_2560606_-\|ferredoxin-type-protein-NapG	gnl\|CDD\|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	3.24068e-152
NZ_CP011132.1\|WP_046481697.1\|2552577_2553135_-\|thiol:disulfide-interchange-protein-DsbE	gnl\|CDD\|185310	PRK15412, PRK15412, thiol:disulfide interchange protein DsbE; Provisional.	2.73483e-136
NZ_CP011132.1\|WP_046481709.1\|2559060_2559924_-\|quinol-dehydrogenase-ferredoxin-subunit-NapH	gnl\|CDD\|236535	PRK09477, napH, quinol dehydrogenase membrane component; Provisional.	6.65735e-167
NZ_CP011132.1\|WP_046481713.1\|2560612_2563099_-\|nitrate-reductase-catalytic-subunit-NapA	gnl\|CDD\|237416	PRK13532, PRK13532, nitrate reductase catalytic subunit NapA.	0
NZ_CP011132.1\|WP_046481694.1\|2550836_2551484_+\|nitrate/nitrite-response-regulator-protein-NarP	gnl\|CDD\|182431	PRK10403, PRK10403, nitrate/nitrite response regulator protein NarP.	7.7649e-140
NZ_CP011132.1\|WP_046481701.1\|2555547_2555760_-\|heme-exporter-protein-CcmD	gnl\|CDD\|225656	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion].	2.5412e-26
NZ_CP011132.1\|WP_046481695.1\|2551528_2552581_-\|cytochrome-c-type-biogenesis-protein-CcmH	gnl\|CDD\|226687	COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones].	1.7732e-67
NZ_CP011132.1\|WP_046481690.1\|2547809_2548172_+\|GtrA-family-protein	gnl\|CDD\|225155	COG2246, COG2246, Predicted membrane protein [Function unknown].	9.77417e-17

>NZ_CP011132.1|WP_046481703.1|2555756_2556494_-|heme-ABC-transporter-permease
MWKTLHQLAMPPRLYQICGWFVPWLAIASAVVLATGWIWGFGFAPADYQQGQSYRIIYLHVPAAIWSMGIYASMAVAAFIGLVWQMKMANLALAAMAPIGAVFTFIALVTGSTWGKPMWGTWWVWDARLTSELVLLFLYVGAIALWHAFDDRKMAGRAAGILVLIGVVNLPIIHYSVEWWNTLHQGSTRMQQSIDPAMRTPLRLAIVGYLLLFITLSLMRMRNLILMMEKRRPWVSELILKRGRQ
>NZ_CP011132.1|WP_046481701.1|2555547_2555760_-|heme-exporter-protein-CcmD
MTTAFASWSEFFAMGGYAFYVWLAVALSVIPLAVLVIHTVTQHRAILRDVSRQRAREARLQAAQTQREAA
>NZ_CP011132.1|WP_046481700.1|2555071_2555551_-|cytochrome-c-maturation-protein-CcmE
MNIRRKNRLWIACGVLVGLALTITLVLYALRANIDLFYTPGEIIYGKRETQQMPEVGQRLRVGGMVMPGSVKRDANSLKVNFSIYDAEGVVDVTYEGILPDLFREGQGVVVQGELGEKNHILAKEVLAKHDENYTPPEVEKAMQENHRRPASVNKDTTP
>NZ_CP011132.1|WP_046481698.1|2553131_2555075_-|heme-lyase-CcmF/NrfE-family-subunit
MMPEIGNALLCLALGVALLLSVYPLWGVARGDARMMASARPFAWLLFILVMGAFMVLINAFVVNDFTVLYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVALFSQRMPLDIVARVLAVMGMVSVGFLLFILFTSNPFTRTLPDFPIEGRDLNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALMSGRLDSTFARFSRPWTLAAWVFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLVGTALMHSLAVTEQRGSFKAWTLLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPSRGMFILAFMVLVIGGSLLLFATRGHKVRSRVNNALWSRESLLLGNNVLLIAAMLVVLLGTLLPLVHKQLGLGSISIGEPFFNTMFTWLMAPFALLLGIGPLVRWGRDRPRKLQRLLVIALVSTFVLSLLLPWLFENKIVAMTVVGLAMACWVFVLAMAELAQRISRGTKMTLSYWGMVAGHVGLAVTIVGIAFSQNYSVERDVRMKAGDSVDIHEYRFTFRDVKEVTGPNYRGGVGIIDVTRDGKMEATLHAEKRFYNSTSSMMTEAAIDGGITRDLYAALGEELDNGAWAVRLYYKPFIRWIWAGGILMALGGLLCLFDPRYRKRVQPQKSASEAV
>NZ_CP011132.1|WP_046481697.1|2552577_2553135_-|thiol:disulfide-interchange-protein-DsbE
MKRNVLLIPFVIFLVIAAALLWQLARNAEGDTPTNLESALIGKPVPTFRLESLENPGKHYEADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGLNYKDDRQKAIVWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGKGIIRYRHAGDLNARVWENEIKPLWEKYGKEAAQ
>NZ_CP011132.1|WP_046481695.1|2551528_2552581_-|cytochrome-c-type-biogenesis-protein-CcmH
MRILLSVLMLLLSANALATIDVMQFKDETQEQQFRQLTEQLRCPKCQNNSIADSNSMIATDLRQKVYELMQEGKSQKEIVDYMVARYGNFVTYDPPLTPLTVLLWVLPVAAIGAGGWIIVARSRRRVRLKREVFPDEMTLAEGKRAGLAVYLPGIVIAVIVSAVSYYQTGSYKQVAIWQQATAQSPALLERALDPKAQPLDEEEMTRLALGLRTRLQSDATNVEGWIMLGRIGMVLGNASTATEAYANAYRLDPKNSDAALGYAEALTRSSDPDDNRRGGELLRELVRSDHANVRVLSMYAFNAYEQERFGDAVAAWEMMLKMLPANDTRRAVIERSIAQAMQHLSPKSE
>NZ_CP011132.1|WP_046481694.1|2550836_2551484_+|nitrate/nitrite-response-regulator-protein-NarP
MPESLPFQVLVVDDHPLMRRGIRQLLELDPTFEVVAEAGDGATAIDLANRLDLDLILLDLNMKGLSGLDTLNALRRDGITAQIIILTVSDSASDIYALIDAGADGYLLKDSDPEVLLDAIRTGANGGKVFSERVSDYLREREMFGEEDDPFSMLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATILFLQTRGLQ
>NZ_CP011132.1|WP_046481692.1|2549115_2550660_+|hypothetical-protein
MLKHVNKSILLIAFFAVFVLEWFTPIHSDDYRYALLGISFDAHLHHYLTWSGRVVADFVSALLLATGSRGFVSTMTGLVVVAFCYFIVKTPTGTLKWQKHDALIFTLVFLTFWVANPNIGQTVFWIVGSANYLWTNLFVAAWIWNLYRIQRQREERMHVGMLLLGLLAGCSNESVAPFVVGLALLAIVYDYWQEKRVIANKIAYFLSALVGASILIFSPGNFIRAQGAHTVWYDKSIVERITIHLSDRFFSHLALVWISYVVLVLLAILLFVAKRQGHRIKSANLSMVGLMLLVGLGTSFIMVASPSYPDRVMLSTFLFFLLALSFLAREVVTVAGPGVMKGVYAVTGLMATVFLWSYALMFAAYTRVYQQDFVRVSIVKNQLSQGHKDFTVPDFHFLKMQNSGGHFGFFHDPQVYGRYFGAGNVEKEKVNFDYSVRANGKQQALGDDATAWFNNRGDLMLVSKRPLAGTVQVKSASSDSSLSLARFSAAKINDEYWYFSAIPKEDVTHVALHP
>NZ_CP011132.1|WP_046481691.1|2548168_2549116_+|glycosyltransferase-family-2-protein
MKISLVVPVFNEEETIGLFYKTVREYDALKEHDIEIVFINDGSTDATESIVNALAVADPLVVPLSFTRNFGKEPALLAGLDNASGDAVIPMDVDLQDPVEVLPHLIQKWQEGADIVLAKRSDRSVDGRLKRKTAEWFYKLHNKISTPHIEENVGDFRLMSREVVDNIKQMPERNLFMKGILSWVGGKTDIVLYARATRCAGKSKFNGWKLWNLALEGITSFSTFPLRIWTYIGLAVALFSFTYGAGMVIDTLLWGNPVRGYSSLIVSILFLGGVQLIGIGVLGEYIGRIYVETKKRPRYILKKRKTMDHDSDKDN
>NZ_CP011132.1|WP_046481690.1|2547809_2548172_+|GtrA-family-protein
MWHHFIKYTSVGVINTLIHWVVFAICIYVFHTHQALANFLGFSIAVSFSFYANARFTFKQSTTTRRYLLYVGFMGLLSILTGWGAEKCGFPPLVTLVAFSAISLICGFIYSRFIVFKDAR
>NZ_CP011132.1|WP_042317911.1|2556702_2557362_-|heme-exporter-protein-CcmB
MMWRIFRLELRVAFRHSAEIANPLWFFLIVITLFPLSIGPEPQLLARIAPGIIWVAALLASLLALERLFRDDLQDGSLEQLMLLPIPLPMVVLAKVMAHWMVTGLPLLILSPLVALLLGMDIYGWKIMALTLLLGTPTLSFLGAPGVGLTVGLKRGGVLLSVLVLPLTIPLLIFATAAMDAASMHLPVDGYMAILGALLAGSATLSPFATAAALRISLQ
>NZ_CP011132.1|WP_046481704.1|2557358_2557979_-|cytochrome-c-biogenesis-heme-transporting-ATPase-CcmA
MLEARKLLCERDERVLFSDLSFQVNAGEWIQVTGGNGAGKTTLLRLLTGLSRPDAGEVCWREQPLHRVRDSYHQNLLWIGHQPGIKTRLTALENLRFFHQDGDSAQCLAALAQAGLAGYEDIPVNQLSAGQQRRVALARLWLTHATLWILDEPFTAIDVNGVERLTQRMAQHTEEGGIVILTTHQPMNVATDRIRRIALTHERGGQ
>NZ_CP011132.1|WP_046481706.1|2558002_2558605_-|cytochrome-c-type-protein-NapC
MENSNRKPGRIKRLWQWWRRPSRLALGTLLLIGFVGGIIFWGGFNTGMEKANTEEFCISCHEMRNTVYQEYMETVHYNNRSGVRATCPDCHVPHEFVPKMIRKIKASKELYAKALGLIDTPQKFEAHRLTMAQNEWRRMKDNNSQECRNCHNFEFMDLTAQKSVAAKMHDQAVKDGQTCIDCHKGIAHKLPDMREVKPGF
>NZ_CP011132.1|WP_046481707.1|2558614_2559064_-|nitrate-reductase-cytochrome-c-type-subunit
MKSHDLKKALCQWTALLALVVSGAVWAANGVDLSQSPEVSGTQEGAIRMQKEQERMPLNYVNQPPMIPHSVDGYQVTTNTNRCLQCHGVESYRTTGAPRISPTHFMDSDGKVLAEVAPRRYFCLQCHVPQTDAPPIVGNTFTPSKGYGK
>NZ_CP011132.1|WP_046481709.1|2559060_2559924_-|quinol-dehydrogenase-ferredoxin-subunit-NapH
MANRKRDAGREAQAKKGVWRSHRWLIFRRLSQLIVLGMFLSGPWFGVWILHGNYSSSVLLDTIPLTDPLITLQSLASGHLPAAVGLTGAAIITVLYVLAGKRLFCSWVCPLNPITDFAAWLRRRFDLNQSATIPRHIRYVLLVVVLVGSALTGTLLWEWINPVSLLGRSLVIGFGSGALLIIALFLFDLLVVEHGWCGHLCPLGALYGVLGSQGVLTVAAKDRQKCNRCMDCFHVCPEPHVLRAPVLDEQSPVQVTSRDCMACGRCVDVCSEDVFTITTRWSSGAKS
>NZ_CP011132.1|WP_046481711.1|2559910_2560606_-|ferredoxin-type-protein-NapG
MSRSAKPQNGRRRFLRDIVRTAGGLAAVGVALGLQQQTARATGVRLRPPGAVNENAFASACVRCGQCVQACPYDTLKLATLASGLSAGTPYFVARDIPCEMCEDIPCAKVCPSGALDREIASIDDSRMGLAVLLDQENCLNFQGLRCDVCYRECPKIDEAITLELDRNMRTGKHARFIPTVHSDACTGCGKCEKVCVLEQPAIKVLPLTLAKGELGHHYRFGWLEGNDGKS
>NZ_CP011132.1|WP_046481713.1|2560612_2563099_-|nitrate-reductase-catalytic-subunit-NapA
MKLSRRSFMKANAVAAAAAAAGLSVPGVARAVVGQQEAIKWDKAPCRFCGTGCGVLVGTQQGRIVACQGDPEAPVNRGLNCIKGYFLPKIMYGDDRLTQPLLRMRDGKYSKDGEFTPISWEQAFDVMEEKFKTSLKEKGPESVGMFGSGQWTIWEGYAASKLFKAGFRSNNLDPNARHCMASAVVGFMRTFGMDEPMGCYDDIEHTDAFVLWGANMAEMHPILWSRITNRRLSDPNVNVSVLSTFQHRSFELADNGMIFTPQSDLVILNYIANYIIQNNAINQDFFSKHVNVRKGATDIGYGLRPTHPLEKAAKNPGSDASEPMSFEDYKAFVAEYTLEKTAEMTSVPKDQLEQLAKLYADPNKKVISYWTMGFNQHTRGVWANNLIYNIHLLTGKIAQPGCGPFSLTGQPSACGTAREVGTFAHRLPADMVVTNEKHREICEKHWNIPAGTIPAKIGLHAVAQDRALKDGKLNVYWTMCTNNMQAGPNINADRLPGWRDPRNFIIVSDPYPTVSALAADLILPTAMWVEKEGAYGNAERRTQFWRQQIKAPGESKSDLWQLVQFSRRFKTEEVWPEELLAQKPELRGKTLYDVLFATPAVSKFPLTELKEDQLNDESRDLGFYLQKGLFEEYAWFGRGHGHDLAPFDDYHKARGLRWPVVDGKETQWRYSEGNDPYVKAGEGYKFYGKPDGKAVIFALPFEPAAEAPDAEYDLWLSTGRVLEHWHTGSMTRRVPELHRAFPEGVLFIHPLDAKKRDMRRGDKVKVISRRGEMVSIVETRGRNRPPEGLVYMAFFDAAQLVNNLTLDATDPLSKETDFKKCAVKLAKV
>NZ_CP011132.1|WP_046481714.1|2563095_2563359_-|chaperone-NapD
MHNNWQVCSLIVQAKGEHVQDISTQLNALPGCEVAVSDSQSGQMIAVVEAEHSETLMQTIESVRNVAGVLAVSLVYHQQEEQGEETP
>NZ_CP011132.1|WP_046481716.1|2563348_2563840_-|ferredoxin-type-protein-NapF
MVDLSRRGILTGSWRNANRGIRPPWSMEASQFLSQCTRCDACIQACEHDVLQRGTGGYPSVNFQQSECTFCYACAQACPESLFSPRHTRAWDLIFTLGQACLAFQSVECRRCQDSCEPQAIMFRPTRSGIYQPQLDNQNCNGCGACVASCPVSAITAEYNHAQ
>NZ_CP011132.1|WP_046498086.1|2564248_2564746_+|serine-protease-inhibitor-ecotin
MKTMVPAVLFAAFASTSAWAASAETTPQPLEKIAPYPQAEKGMKRQVIQLPHQEDESTLKVELMIGQTLEVDCNQHRLGGKLESKTLEGWGYDYYVFDKVTSPVSTMMACPDGKKEPKFVTAYLGDDAMLRYNSKLPIVVYTPANVDVKFRIWKAEDNVQNAVTR

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Crispr_ID: NZ_CP011132_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011132_8

4779462-4779573

Orphan

Consensus_repeat	Method
TGCCTGATGGCGCTATGCTTATCAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011132_8

>merge|NZ_CP011132|8|4779462-4779573|CRISPRCasFinder
TGCCTGATGGCGCTATGCTTATCAGGCCTACCATACTCCAACCGTAGGCCGGATAAGACGTTTACGTCGTCATCCGGCTGGATGCTTGCCTGATGGCGCTACGCTTATCAGG

>NZ_CP011132|8|7|4779462-4779573|CRISPRCasFinder
TGCCTGATGGCGCTATGCTTATCAGG	CCTACCATACTCCAACCGTAGGCCGGATAAGACGTTTACGTCGTCATCCGGCTGGATGCT
TGCCTGATGGCGCTACGCTTATCAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011132.1\|WP_046493831.1\|4790866_4791691_-\|PTS-system-mannose/fructose/sorbose-family-transporter-subunit-IID	unknown	unknown	gnl\|CDD\|129908
NZ_CP011132.1\|WP_046493814.1\|4777590_4779315_+\|bifunctional-isocitrate-dehydrogenase-kinase/phosphatase	unknown	unknown	gnl\|CDD\|226945
NZ_CP011132.1\|WP_046493810.1\|4773242_4774172_+\|homoserine-O-succinyltransferase	unknown	unknown	gnl\|CDD\|235433
NZ_CP011132.1\|WP_046498501.1\|4760796_4761231_-\|zinc-resistance-sensor/chaperone-ZraP	unknown	unknown	gnl\|CDD\|183189
NZ_CP011132.1\|WP_046493804.1\|4764206_4765496_-\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|234856
NZ_CP011132.1\|WP_046493825.1\|4788137_4788677_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011132.1\|WP_046493819.1\|4784388_4784841_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011132.1\|WP_046493801.1\|4762884_4764210_+\|sigma-54-dependent-response-regulator-transcription-factor-ZraR	unknown	unknown	gnl\|CDD\|182412
NZ_CP011132.1\|WP_046498505.1\|4776183_4777488_+\|isocitrate-lyase	unknown	unknown	gnl\|CDD\|237893
NZ_CP011132.1\|WP_046493818.1\|4780625_4784309_+\|methionine-synthase	unknown	unknown	gnl\|CDD\|236539
NZ_CP011132.1\|WP_046493813.1\|4774440_4776042_+\|malate-synthase-A	unknown	unknown	gnl\|CDD\|236432
NZ_CP011132.1\|WP_046493799.1\|4761481_4762888_+\|two-component-system-sensor-histidine-kinase-ZraS	unknown	unknown	gnl\|CDD\|236674
NZ_CP011132.1\|WP_046493807.1\|4765507_4767097_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NZ_CP011132.1\|WP_046493816.1\|4779605_4780430_-\|glyoxylate-bypass-operon-transcriptional-repressor-IclR	unknown	unknown	gnl\|CDD\|183206
NZ_CP011132.1\|WP_046493827.1\|4788778_4789591_-\|shikimate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|183587
NZ_CP011132.1\|WP_155404028.1\|4787941_4788163_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011132.1\|WP_046493821.1\|4785108_4786740_+\|Na/Pi-cotransporter-family-protein	unknown	unknown	gnl\|CDD\|224202
NZ_CP011132.1\|WP_046493823.1\|4786838_4787528_-\|dipeptidase-PepE	unknown	unknown	gnl\|CDD\|179990
NZ_CP011132.1\|WP_046493829.1\|4789592_4790813_-\|L-sorbose-1-phosphate-reductase	unknown	unknown	gnl\|CDD\|176200
NZ_CP011132.1\|WP_046498498.1\|4760014_4760710_+\|DUF1481-domain-containing-protein	unknown	unknown	gnl\|CDD\|369329

Protein	Function_ID	Function_description	E-value
NZ_CP011132.1\|WP_046493831.1\|4790866_4791691_-\|PTS-system-mannose/fructose/sorbose-family-transporter-subunit-IID	gnl\|CDD\|129908	TIGR00828, Mannose-permease_IID_component_Phosphotransferase, PTS system, mannose/fructose/sorbose family, IID component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS].	8.46156e-158
NZ_CP011132.1\|WP_046493814.1\|4777590_4779315_+\|bifunctional-isocitrate-dehydrogenase-kinase/phosphatase	gnl\|CDD\|226945	COG4579, COG4579, Isocitrate dehydrogenase kinase/phosphatase [Signal transduction mechanisms].	0
NZ_CP011132.1\|WP_046493810.1\|4773242_4774172_+\|homoserine-O-succinyltransferase	gnl\|CDD\|235433	PRK05368, PRK05368, homoserine O-succinyltransferase; Provisional.	0
NZ_CP011132.1\|WP_046498501.1\|4760796_4761231_-\|zinc-resistance-sensor/chaperone-ZraP	gnl\|CDD\|183189	PRK11546, zraP, zinc resistance sensor/chaperone ZraP.	2.05337e-74
NZ_CP011132.1\|WP_046493804.1\|4764206_4765496_-\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|234856	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional.	0
NZ_CP011132.1\|WP_046493829.1\|4789592_4790813_-\|L-sorbose-1-phosphate-reductase	gnl\|CDD\|176200	cd08238, sorbose_phosphate_red, L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability.	0
NZ_CP011132.1\|WP_046493801.1\|4762884_4764210_+\|sigma-54-dependent-response-regulator-transcription-factor-ZraR	gnl\|CDD\|182412	PRK10365, PRK10365, sigma-54-dependent response regulator transcription factor ZraR.	0
NZ_CP011132.1\|WP_046498505.1\|4776183_4777488_+\|isocitrate-lyase	gnl\|CDD\|237893	PRK15063, PRK15063, isocitrate lyase; Provisional.	0
NZ_CP011132.1\|WP_046493818.1\|4780625_4784309_+\|methionine-synthase	gnl\|CDD\|236539	PRK09490, metH, B12-dependent methionine synthase; Provisional.	0
NZ_CP011132.1\|WP_046493813.1\|4774440_4776042_+\|malate-synthase-A	gnl\|CDD\|236432	PRK09255, PRK09255, malate synthase; Validated.	0
NZ_CP011132.1\|WP_046493799.1\|4761481_4762888_+\|two-component-system-sensor-histidine-kinase-ZraS	gnl\|CDD\|236674	PRK10364, PRK10364, two-component system sensor histidine kinase ZraS.	0
NZ_CP011132.1\|WP_046493807.1\|4765507_4767097_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NZ_CP011132.1\|WP_046493816.1\|4779605_4780430_-\|glyoxylate-bypass-operon-transcriptional-repressor-IclR	gnl\|CDD\|183206	PRK11569, PRK11569, glyoxylate bypass operon transcriptional repressor IclR.	0
NZ_CP011132.1\|WP_046493827.1\|4788778_4789591_-\|shikimate-5-dehydrogenase	gnl\|CDD\|183587	PRK12550, PRK12550, shikimate 5-dehydrogenase; Reviewed.	0
NZ_CP011132.1\|WP_046493821.1\|4785108_4786740_+\|Na/Pi-cotransporter-family-protein	gnl\|CDD\|224202	COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and metabolism].	0
NZ_CP011132.1\|WP_046493823.1\|4786838_4787528_-\|dipeptidase-PepE	gnl\|CDD\|179990	PRK05282, PRK05282, dipeptidase PepE.	7.02474e-140
NZ_CP011132.1\|WP_046498498.1\|4760014_4760710_+\|DUF1481-domain-containing-protein	gnl\|CDD\|369329	pfam07356, DUF1481, Protein of unknown function (DUF1481). This family consists of several hypothetical bacterial proteins of around 230 residues in length. Members of this family are often referred to as YjaH and are found in the Orders Vibrionales and Enterobacteriales. The function of this family is unknown.	7.36235e-95

>NZ_CP011132.1|WP_046493814.1|4777590_4779315_+|bifunctional-isocitrate-dehydrogenase-kinase/phosphatase
MTRGLELLIAQTILQGFDAQYGRFLEVTSGAQQRFEQADWHAVQQAMKSRIHLYDHHVGLVVEQLRCITGGKSTDAAFLLRVKEHYTGLLPDYPRFEIAESFFNSVYCRLFDHRSLTPERLFIFSSQPERRFRTIPRPLAKDFFPDHGWEPLLTRILSDLPLRLPWQNKGRDIRYIIMHLRETFGEETLQHCHLQVANELFYRNKAAWLVGKLITPTATLPFLLPIHRTDEGELFVDTCLTTTAEASIVFGFARSYFMVYAPLPAALVEWLREILPGKTTAELYMAIGCQKHAKTESYREYLLYLRNCDEQFIEAPGIRGMVMLVFTLPGFDRVFKIIKDKFAPQKEMSAAHVRACYQLVKEHDRVGRMADTQEFENFVLDKRQIDPALMALLLKEVPEKITDLGEQIVIRHLYIERRMVPLNIWLEQVEGQQLRDAIEEYGNAIRQLAAANIFPGDMLFKNFGVTRHGRVVFYDYDEICYMTEVNFRHVPPPRYPEDELSGEPWYSVSPGDVFPEEFRHWLCADPRIRPLFEEMHADLFSADYWRGLQTRIREGHVEDVYAYRRRQRFSVRFA
>NZ_CP011132.1|WP_046498505.1|4776183_4777488_+|isocitrate-lyase
MKTRTQQIEALQKEWTQPRWEGICRPYSAEDVVKLRGSVNPECTLAQLGAAKMWRLLHGESKKGYINSLGALTGGQALQQAKAGIEAVYLSGWQVAADANLASSMYPDQSLYPANSVPAVVDRINNTFRRADQIQWSSGIEPNDPRYVDYFLPIVADAEAGFGGVLNAFELMKSMIEAGAAAVHFEDQLASVKKCGHMGGKVLVPTQEAIQKLVAARLAADVMGVPTLVIARTDADAADLITSDCDPYDSEFITGERTSEGFFRTHAGIEQAISRGLAYAPYADLVWCETSTPDLELAKRFADAIHAKYPGKLLAYNCSPSFNWQKNLDDKTIASFQQQLSDMGYKYQFITLAGIHSMWFNMFDLAHSYAQGEGMRHYVEKVQQPEFAAAKDGYTFVSHQQEVGTGYFDKVTTIIQGGASSVTALTGSTEESQF
>NZ_CP011132.1|WP_046493813.1|4774440_4776042_+|malate-synthase-A
MNQQATTTDELIFTKPYGESERQILTAEAVEFLTELVARFTAKRNKLLAARIQQQQDIDNGILPDFISETVSIRNDNWKIRGIPEDLQDRRVEITGPVERKMVINALNANVKVFMADFEDSLAPEWSKVIDGHINLRDAVNGTISYTNEAGKIYQLKPDPALLICRVRGLHLPEKHVTWRGEAIPGSLFDFALYFFHNYKALLAKGSGPYFYLPKTQAWQEAAWWSEVFSYTEDRFNLSRGTIKATLLIETLPAVFQMDEILHALRDHIVGLNCGRWDYIFSYIKTLKNHPDRVLPDRQVVTMDKPFLSAYSRLLIKTCHKRGAFAMGGMAAFIPSKDVERNNQVLSKVKADKSLEANNGHDGTWIAHPGLADTAMAVFNEVLGENKNQLFVTRDEDAPITAEQLLAPCEGERTEEGMRANIRVAVQYIEAWISGNGCVPIYGLMEDAATAEISRTSIWQWIHHEKTLSNGKPVTKALFRQMLAEEMRVIQDELGEHRYSSGRFDDAARLMEQITTSDELIDFLTLPGYRLLA
>NZ_CP011132.1|WP_046493810.1|4773242_4774172_+|homoserine-O-succinyltransferase
MPIRVLDELPAVNFLREENVFVMTTSRASGQEIRPLKVLILNLMPKKIETENQFLRLLSNSPLQVDVQLLRIDARESRNTPAEHLNNFYCNFEDICDQNFDGLIVTGAPLGLVEFNDVAYWPQIKQVLEWAKDHVTSTLFVCWAVQAALNILYGIPKQTRTDKLSGVYEHHILHPHALLTRGFDDSFLAPHSRYADFPAVLIRDYTDLEILAETEDGDAYLFASKDKRIAFVTGHPEYDANTLGSEYFRDVEAGLSPDVPYNYFPKNDPQNKPRATWRSHGNLLFINWLNYYVYQITPYDLRHMNPTLD
>NZ_CP011132.1|WP_046493807.1|4765507_4767097_-|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MQQRRPVRRALLSVSDKAGIVEFAQALSTRGVELLSTGGTARLLAEKGLPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILGRRGQDDGIMEQHGIAPIDMVVVNLYPFAQTVAREGCSLEDAVENIDIGGPTMVRSAAKNHKDVAIVVKSSDYDTIISEMDANDGSLTLDTRFDLAIKAFEHTAAYDSMIANYFGRMVPAYHGESKDAAGRFPRTLNLNFIKKQDMRYGENSHQQAAFYIEENVKEASVATAQQVQGKALSYNNIADTDAALECVKEFSEPACVIVKHANPCGVAVSTSILDAYDRAYKTDPTSAFGGIIAFNRELDAETAQAIISRQFVEVIIAPSATEDALKITAAKQNVRVLTCGQWAERVPGLDFKRVNGGLLVQDRDLGMVTAGELRVVTKRQPTEQELRDALFCWKVAKFVKSNAIVYAKENMTIGIGAGQMSRVYSAKIAGIKAADEGLEVKGSAMASDAFFPFRDGIDAAAAVGVSCVIQPGGSIRDDEVIAAADEHGIAMIFTDMRHFRH
>NZ_CP011132.1|WP_046493804.1|4764206_4765496_-|phosphoribosylamine--glycine-ligase
MKVLVIGNGGREHALAWKAAQSPKVATVFVAPGNAGTALEPTLQNVAISATDIPALLSFAQSEKIDLTIVGPEAPLVKGVVDTFRAAGLNIFGPTAGAAQLEGSKAFTKDFLARHQIPTAEYQNFTEIEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLEEAEAAVHDMLAGNAFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGDGDTGLNTGGMGAYSPAPVVTDIVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMIDQQGNPKVIEFNCRFGDPETQPIMLRMKSDLVELCLAACEGKLDEQKSEWDERASLGVVMAAGGYPGDYRTGDVIHGLPLEDVADGKVFHAGTKLADDDQVVTSGGRVLCVTALGDTVADAQKRAYALMTAIHWDDCFCRKDIGWRAIEREQH
>NZ_CP011132.1|WP_046493801.1|4762884_4764210_+|sigma-54-dependent-response-regulator-transcription-factor-ZraR
MIRAKIDILVVDDDVSHCTILQALLRGWGYDVALAYSGRAALELVREHVFDLVLCDVRMAEMDGIETLKEIKALNPAIPVLIMTAFSSVETAVEALKTGALDYLIKPLDFDHLQTTLENALAHTRESASELPSVSASQFGMVGKSPAMQQLLSEIAMVAPSDATVLIHGDSGTGKELVARALHASSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEANGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAQEVQAGRFRQDLYYRLNVVTIETPALRQRQEDIPLLADHFLQRFAKRNRKAVKGFTPRAMDLLIHYDWPGNIRELENAIERSVVLLTGEYISERELPLAIASQPLPLVTDQAIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLLR
>NZ_CP011132.1|WP_046493799.1|4761481_4762888_+|two-component-system-sensor-histidine-kinase-ZraS
MRIMRGHKDTVARWLSGVLPAVILILVGLFAVMVIRDYGRESDAARQTLLEKGSVLIRALESGTRVGMGMRMHHAQQQTLLEEMAGQPGVLWFAVTDAQGNVIMHSDPAQVGRTLYTPAEMQTLHPGEEARWRPVDATDAQGEPVPALEIYRQFQPLFFPGRHGMRGMSRGNGGMSDAVHQSIFIAFDASDLAVTQAREWRNTLIMLFALTTVLLATLLTFFWYRRYLRSRQLLQDEMNRKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHELAQVMAKEADRLNRVVSELLELVKPAHLSLQSVDLNAVIGHSLQLVSQDAQNRAIDLQFVPDPALPLIQADPDRLTQVLLNLYLNAIQAIDSQGTIRVEASTSGADRVKITVADSGKGIAPEQLAAIFTPYFTTKADGTGLGLAVVQNIIEQHGGTIQADSLPGKGATFTLWLPVTLTRKDSQG
>NZ_CP011132.1|WP_046498501.1|4760796_4761231_-|zinc-resistance-sensor/chaperone-ZraP
MKRNTKAGLALIALSLMVLGSSPALARHHWGNGGGMWQQNGSGLSAEQQATAQKIHNDFYNQTNALRQQLMSKRYEYNALLATNPPDTAKINAVAKEMESLRQSLDEQRVKRDVAMAQAGVSGDMGMGYGGCGGRGGHMGMGHW
>NZ_CP011132.1|WP_046498498.1|4760014_4760710_+|DUF1481-domain-containing-protein
MNSFNEGAVSPLSSVWRRMLTLAGVLLLTACSHNSSLPPFTASGFADNQGAVRIWRKDAADGVHLLSVFSPWRNGSTTTSEYRWQGDSLSLIELNIYSEPPEHIRVRFDDRGELSFMQREVDGHKQQLSNDQIELYRYRAEQIRQTSDALRQGRVVLRQGRWHAAEHAVTTCEGETIKPDLDARAMSHIERRQSRSSVDVSVAWLEAPEGAQLLLVANSDFCHWQPKEKTF
>NZ_CP011132.1|WP_046493816.1|4779605_4780430_-|glyoxylate-bypass-operon-transcriptional-repressor-IclR
MVAPVPAKRGRKPAATTVPAAGQVQSLTRGLKLLEWIAESNGSVALTELAQQAGLPNSTTHRLLSTMQQQGFVRQVGDLGHWAIGPHAFIVGSSFLQSRNLLAIVHPILRKLMEDSGETVNLAVLDQSDHQAIIIDQVQCTQLMRMSAPIGGKLPMHASGAGKAFLAQLSEDQVTQLLHRKGLHAYTHATLVSPVHLKDDLAQTRKRGYSFDDEEHALGLRCVASCIYDEHREPFAAISISGPISRITDDRVTEFGAMVIKAAKEVTLAYGGIR
>NZ_CP011132.1|WP_046493818.1|4780625_4784309_+|methionine-synthase
MSSKVEQLRAQLNERILVLDGGMGTMIQSYRLSEEDFRGERFADWPCDLKGNNDLLVLSKPEVIAAIHNAYFDAGADIIETNTFNSTPIAMADYQMESLSAEINFAAAKLARACADEWTARTPEKPRYVAGVLGPTNRTASISPDVNDPAFRNITFDQLVSAYRESTKALVEGGSDLILIETVFDTLNAKAAIFAVKEELEALGVDLPIMISGTITDASGRTLSGQTTEAFYNSLRHAEPLTFGLNCALGPDELRQYVQELSRIAECYVTAHPNAGLPNAFGEYDLDADTMAGQIREWAEAGFLNIVGGCCGTTPEHIAAMSRAVEGLAPRQLPEIPVACRLSGLEPLNIGDDSLFVNVGERTNVTGSAKFKRLIKEEKYNEALDVARQQVESGAQIIDINMDEGMLDAEAAMVRFLNLIAGEPDIARVPIMIDSSKWEVIEKGLKCIQGKGIVNSISMKEGVEIFTHHAKLLRRYGAAVVVMAFDEQGQADTRARKIEICRRAYKILTEEVGFPPEDIIFDPNIFAVATGIEEHNNYAQDFIGACEDIKRELPHALISGGVSNVSFSFRGNDPVREAIHAVFLYYAIRNGMDMGIVNAGQLAIYDDLPADLRDAVEDVILNRRDDGTERLLELAEKYRGSKSDETANAQLAEWRTWEVKKRLEYSLVKGITEFIEQDTEEARQQAARPIEVIEGPLMDGMNVVGDLFGEGKMFLPQVVKSARVMKQAVAYLEPFIEASKEKGSSNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQGFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQNASRTVGVVAALLSDTQRDDFVARTRKEYETVRIQHGRKKPRTPPVTLAAARENDLAFDWENYTPPVAHRLGVQEVEASIETLRNYIDWTPFFMTWSLAGKYPRILEDEVVGVEAKRLFNDANDMLDKLSAEKSLNPRGVVGLFPANRVGDDIEIYRDETRTHVLTVSHHLRQQTEKVGFANYCLSDFVAPKLSGKADYIGAFAVTGGLEEDALAEAFEAQHDDYNKIMVKALADRLAEAFAEYLHERVRKVYWGYAANENLSNEELIRENYQGIRPAPGYPACPEHTEKGTIWQLLDVEKHTGMKLTESFAMWPGASVSGWYFSHPDSKYYAVAQIQRDQVEDYAFRKGMSVSEVERWLAPNLGYDAD
>NZ_CP011132.1|WP_046493819.1|4784388_4784841_+|hypothetical-protein
MFSQLKARNKILLFWGLMDLLALGVYFWQSSLQGNVPFYSDVVNFTRTFSAYGASEGPGAAIQIVFLVGLLMKISLIYTAYLFLFKDKLNYILLGIQEVLRFASLTCSVSLFPLFFSLIGSHSAALALSGFLLSECAKVGSLWWYHSRSA
>NZ_CP011132.1|WP_046493821.1|4785108_4786740_+|Na/Pi-cotransporter-family-protein
MLTLLHLLSAVALLVWGTHIVRTGVMRVFGARLRTVLSRSVEKKPLAFCAGIGVTALVQSSNATTMLVTSFVAQDLVALTPALVIVLGADVGTALMARILTFDLSWLSPLLIFIGVIFFLGRKQSRAGQLGRVGIGLGLILLALELIVQAVTPMTQANGVQVIFASLTGDIMLDALIGAMFAIISYSSLAAVLLTATLTAAGIISFPVALCLVIGANLGSGLLAMLNNSAANAAARRVALGSLLFKLVGSLIILPFVHPLANLMDQLPLPKAELVIYFHVFYNLVRCLAMIPFAEPMARFCKRIIRDEPELDAHLKPKHLDVSALDTPTLALANAAREALRIGDAMEQMMEGLKRVMHGEPREEKELRKMADDINVLYTAIKLYLARMPKEELAEEESRRWAEIIEMSLNLEQASDIVERMGSEIADKSLAARRAFSIEGLKELDALYDQLLSNLQLAMSVFFSGDVTSARRLRRSKHRFRILNRRYSHAHVDRLHQQNVQSIETSSLHLGLLGDMQRLNSLFCSVAYSVLEQPDEDDERDDY
>NZ_CP011132.1|WP_046493823.1|4786838_4787528_-|dipeptidase-PepE
MELLLLSNSTLPGKGWMEHALPLIAEQLNGRRSAVFIPFAGVTQTWDEYTEKTAAIFAPMGVRVVGIHNVADPLAAIENAEVVIVGGGNTFQLLKESRERGLLAPIVDVVKRGALYIGWSAGANLACQTIRTTNDMPIVDPQGFDALGLFPLQINPHFTNALPEGHKGETREQRIRELLVVAPELTVIGLPEGNWINVSKGQAVLGGPNTTYIFNAGEDAVAVEAGHCF
>NZ_CP011132.1|WP_155404028.1|4787941_4788163_+|hypothetical-protein
MSKNKKPQRPVSFNVNSLSNNVFRYSWYENDSPSTPAGEPLPHKGKETQIMNSFAPPTRPGKGGDNGSGNSGK
>NZ_CP011132.1|WP_046493825.1|4788137_4788677_+|hypothetical-protein
MDQVTLESNWEGLLFDIRRSVRYHNRRRAFYDRLDQFTNVISLIFGSTAIYSVLGEHNKMWAVLSGAVVSVFAAINLVIGSSQRSRNHFDLSKSFVDLESKMIKESEPTEQLLREATSLRLSIEKDEPPVLRVLDSICYNEQLLAMDYPVNQMIKISFCQNLFAQFFDWRASTLRKMPT
>NZ_CP011132.1|WP_046493827.1|4788778_4789591_-|shikimate-5-dehydrogenase
MINRDTQLCMSLAGRPGNFGTRFHNYLYEKLGLNFIYKAFTTQDIEAAVKGVRALGIRGCAVSMPFKESCMPFLDAVDPSAKVIDSVNTIVNDDGRLTGYNTDYIAVKSLIASHQLDTAARVMIRGSGGMGKAVIAAFRDAGFRDVIIAARNRDSGPALAKQYGFQWQPLPEGIACDILVNVTPVGMAGGKESDELAYSEPMVANASVVFDVVALPPETPMIKLAQKLGKKTISGAEVIALQAVEQFAMYTGVRPDDALIVEAAEFARAG
>NZ_CP011132.1|WP_046493829.1|4789592_4790813_-|L-sorbose-1-phosphate-reductase
MLTTALRLYGKRDLRLETFELPEMQDDEILATVVTDSLCLSSWKEANQGESHKKVPDDVATHPIIIGHEFCGDIIAVGKKWQHKFQPGQRYVIQANLQLADRPDCPGYSFPWVGGEATHVVIPNVVMEQDCLLAYEGETYFEGSLVEPLSCVIGAFNANYHLQEGTYNHNMGIRPQGRTLILGGTGPMGLLAIDYALHGPVNPALLVVTDTNHDKLSYARKHYPSEPQTLIHYLHAQDAAYDTLMTLSGGHGFDDIFVFVPNEQLVTLASSLLAPDGCMNFFAGPQDKQFSAPINFYDVHYAFTHYVGTSGGNTDDMRAAVKLIEEKKVQAAKVVTHILGLNAAGETTLELPKVGGGKKLVYTGKALPLTALNQIDDPALCAILERHHGIWSKEAEQYLLSHAEEI
>NZ_CP011132.1|WP_046493831.1|4790866_4791691_-|PTS-system-mannose/fructose/sorbose-family-transporter-subunit-IID
MEQKKLTKSDLFSMFVRSNLQQASFNFERIHGLGFCYDMIPAIKRLYPLKEDQVAALKRHLVFFNTTPAVCGPVIGVTAAMEEARANGAEIDDGAINGIKVGLMGPLAGVGDPLVWGTLRPITAALGASLALSGNVLGPLLFFFIFNAVRLAMKWYGLQIGFNKGVNIVSDMGGNLLQKLTEGASILGLFVMGVLVTKWTSINVPLVVSQTPGADGGTVTMTVQNILDQLCPGLLALGLTMLMVRLLNKKINPVWLIFALFGLGIIGNALGFLS

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Crispr_ID: NZ_CP011132_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011132_9

4894318-4894423

Orphan

Consensus_repeat	Method
GATGCCTGATGGCGCTGCGCTTATCAGGCCTACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011132_9

>merge|NZ_CP011132|9|4894318-4894423|CRISPRCasFinder
GATGCCTGATGGCGCTGCGCTTATCAGGCCTACGGTTCGTGCTTTTCGTAGGCCGGATAGGGCGTTGGTCCGATGCCTGATGACGCTGCGCTTATCAGGCCTACGG

>NZ_CP011132|9|8|4894318-4894423|CRISPRCasFinder
GATGCCTGATGGCGCTGCGCTTATCAGGCCTACGG	TTCGTGCTTTTCGTAGGCCGGATAGGGCGTTGGTCC
GATGCCTGATGACGCTGCGCTTATCAGGCCTACGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011132.1\|WP_046493974.1\|4889402_4890071_+\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|198298
NZ_CP011132.1\|WP_042999048.1\|4885808_4886090_-\|YjcB-family-protein	unknown	unknown	gnl\|CDD\|374240
NZ_CP011132.1\|WP_046493977.1\|4893814_4894306_+\|transposase	unknown	unknown	gnl\|CDD\|224854
NZ_CP011132.1\|WP_046493979.1\|4895475_4895886_+\|CidA/LrgA-family-protein	unknown	unknown	gnl\|CDD\|224298
NZ_CP011132.1\|WP_046493975.1\|4890419_4891769_+\|guanine/hypoxanthine-transporter-GhxP	unknown	unknown	gnl\|CDD\|225161
NZ_CP011132.1\|WP_162200253.1\|4896647_4897190_-\|DUF3828-domain-containing-protein	unknown	unknown	gnl\|CDD\|372360
NZ_CP011132.1\|WP_046493972.1\|4888274_4888598_-\|superoxide-response-transcriptional-regulator-SoxS	unknown	unknown	gnl\|CDD\|182314
NZ_CP011132.1\|WP_046493982.1\|4899627_4901586_-\|acetate--CoA-ligase	unknown	unknown	gnl\|CDD\|234677
NZ_CP011132.1\|WP_046493976.1\|4891917_4893564_+\|Na+/H+-antiporter	unknown	unknown	gnl\|CDD\|129911
NZ_CP011132.1\|WP_046493970.1\|4882543_4885252_-\|cation-transporting-P-type-ATPase	unknown	unknown	gnl\|CDD\|319775
NZ_CP011132.1\|WP_046493973.1\|4888683_4889148_+\|redox-sensitive-transcriptional-activator-SoxR	unknown	unknown	gnl\|CDD\|184964
NZ_CP011132.1\|WP_046493981.1\|4897426_4899076_-\|cation/acetate-symporter-ActP	unknown	unknown	gnl\|CDD\|236495
NZ_CP011132.1\|WP_052747015.1\|4881441_4882182_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_CP011132.1\|WP_046493983.1\|4902018_4903455_+\|ammonia-forming-nitrite-reductase-cytochrome-c552-subunit	unknown	unknown	gnl\|CDD\|236854
NZ_CP011132.1\|WP_046493978.1\|4894478_4895372_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176129
NZ_CP011132.1\|WP_046493984.1\|4903557_4904121_+\|cytochrome-c-nitrite-reductase-pentaheme-subunit	unknown	unknown	gnl\|CDD\|183264
NZ_CP011132.1\|WP_042321140.1\|4899072_4899387_-\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|225704
NZ_CP011132.1\|WP_046493980.1\|4895878_4896568_+\|LrgB-family-protein	unknown	unknown	gnl\|CDD\|224265
NZ_CP011132.1\|WP_046493971.1\|4886685_4888272_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|227279
NZ_CP011132.1\|WP_042999063.1\|4904117_4904789_+\|cytochrome-c-nitrite-reductase-Fe-S-protein	unknown	unknown	gnl\|CDD\|274451

Protein	Function_ID	Function_description	E-value
NZ_CP011132.1\|WP_046493974.1\|4889402_4890071_+\|glutathione-S-transferase	gnl\|CDD\|198298	cd03189, GST_C_GTT1_like, C-terminal, alpha helical domain of GTT1-like Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pombe GST-III is implicated in the detoxification of various metals.	4.90934e-49
NZ_CP011132.1\|WP_042999048.1\|4885808_4886090_-\|YjcB-family-protein	gnl\|CDD\|374240	pfam15940, YjcB, Family of unknown function. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length.	7.8097e-41
NZ_CP011132.1\|WP_046493977.1\|4893814_4894306_+\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.0819e-34
NZ_CP011132.1\|WP_046493979.1\|4895475_4895886_+\|CidA/LrgA-family-protein	gnl\|CDD\|224298	COG1380, COG1380, Putative effector of murein hydrolase LrgA [General function prediction only].	2.94168e-34
NZ_CP011132.1\|WP_046493975.1\|4890419_4891769_+\|guanine/hypoxanthine-transporter-GhxP	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	9.3782e-146
NZ_CP011132.1\|WP_162200253.1\|4896647_4897190_-\|DUF3828-domain-containing-protein	gnl\|CDD\|372360	pfam12883, DUF3828, Protein of unknown function (DUF3828). This is a family of bacterial proteins of unknown function.	3.97353e-37
NZ_CP011132.1\|WP_046493972.1\|4888274_4888598_-\|superoxide-response-transcriptional-regulator-SoxS	gnl\|CDD\|182314	PRK10219, PRK10219, superoxide response transcriptional regulator SoxS.	3.01332e-65
NZ_CP011132.1\|WP_046493982.1\|4899627_4901586_-\|acetate--CoA-ligase	gnl\|CDD\|234677	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.	0
NZ_CP011132.1\|WP_046493976.1\|4891917_4893564_+\|Na+/H+-antiporter	gnl\|CDD\|129911	TIGR00831, Putative_Na+/H+_exchanger_Rv2287/MT2345/Mb2309., Na+/H+ antiporter, bacterial form. The Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36) The CPA1 family is a large family of proteins derived from Gram-positive and Gram-negative bacteria, blue green bacteria, yeast, plants and animals. Transporters from eukaryotes have been functionally characterized, and all of these catalyze Na+:H+ exchange. Their primary physiological functions may be in (1) cytoplasmic pH regulation, extruding the H+ generated during metabolism, and (2) salt tolerance (in plants), due to Na+ uptake into vacuoles. This model is specific for the bacterial members of this family. [Transport and binding proteins, Cations and iron carrying compounds].	0
NZ_CP011132.1\|WP_046493970.1\|4882543_4885252_-\|cation-transporting-P-type-ATPase	gnl\|CDD\|319775	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp. PCC 6803 PMA1, a putative Ca(2+)-ATPase. This subfamily includes the P-type Na(+)-ATPase of an alkaliphilic bacterium Exiguobacterium aurantiacum Mna and cyanobacterium Synechocystis sp. PCC 6803 PMA1, a cation-transporting ATPase which may translocate calcium. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP011132.1\|WP_046493973.1\|4888683_4889148_+\|redox-sensitive-transcriptional-activator-SoxR	gnl\|CDD\|184964	PRK15002, PRK15002, redox-sensitive transcriptional activator SoxR.	3.70619e-108
NZ_CP011132.1\|WP_046493981.1\|4897426_4899076_-\|cation/acetate-symporter-ActP	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0
NZ_CP011132.1\|WP_052747015.1\|4881441_4882182_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	1.04737e-33
NZ_CP011132.1\|WP_046493983.1\|4902018_4903455_+\|ammonia-forming-nitrite-reductase-cytochrome-c552-subunit	gnl\|CDD\|236854	PRK11125, nrfA, ammonia-forming cytochrome c nitrite reductase.	0
NZ_CP011132.1\|WP_046493978.1\|4894478_4895372_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176129	cd08438, PBP2_CidR, The C-terminal substrate binding domain of LysR-like transcriptional regulator CidR, contains the type 2 periplasmic binding fold. This CD includes the substrate binding domain of CidR which positively up-regulates the expression of cidABC operon in the presence of acetic acid produced by the metabolism of excess glucose. The CidR affects the control of murein hydrolase activity by enhancing cidABC expression in the presence of acetic acid. Thus, up-regulation of cidABC expression results in increased murein hydrolase activity. This substrate binding domain has significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.51077e-88
NZ_CP011132.1\|WP_046493984.1\|4903557_4904121_+\|cytochrome-c-nitrite-reductase-pentaheme-subunit	gnl\|CDD\|183264	PRK11659, PRK11659, cytochrome c nitrite reductase pentaheme subunit; Provisional.	3.05912e-105
NZ_CP011132.1\|WP_042321140.1\|4899072_4899387_-\|DUF485-domain-containing-protein	gnl\|CDD\|225704	COG3162, COG3162, Predicted membrane protein [Function unknown].	2.9348e-50
NZ_CP011132.1\|WP_046493980.1\|4895878_4896568_+\|LrgB-family-protein	gnl\|CDD\|224265	COG1346, LrgB, Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane].	4.0968e-88
NZ_CP011132.1\|WP_046493971.1\|4886685_4888272_+\|EAL-domain-containing-protein	gnl\|CDD\|227279	COG4943, COG4943, Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms].	0
NZ_CP011132.1\|WP_042999063.1\|4904117_4904789_+\|cytochrome-c-nitrite-reductase-Fe-S-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	1.04451e-143

>NZ_CP011132.1|WP_046493977.1|4893814_4894306_+|transposase
MSDYRRNYINGGTWFFTVNLRNRRSDLLTTQITVLREAIWRVKRSKPFQINAWVVLPEHMHCIWTLPDNEYDFSARWRAIKKTFSKSLALRQAWQPRFWEHTIRDQNDYQRHVDYIYINPVKHGWVTQVKNWPYSTFHRDVKRGLYPQEWANDMASLQAGERV
>NZ_CP011132.1|WP_046493976.1|4891917_4893564_+|Na+/H+-antiporter
MEIFFTILIMTLVVSLSGVFTRVLPFQLPLPLMQIAIGALLAWPTFGLHVEFDPELFLVLFIPPLLFADGWKTPTREFLEHGREIFGLALALVVVTVVGIGFLIYWVVPGIPLIPAFALAAVLSPTDAVALSGIVGEGRIPKKIMGILQGEALMNDASGLVALKFAVAVAMGTMIFTIGGATVEFFKVAIGGILAGFVVSWLYGRSLGFLSRWGGDEPATQIVLLFLLPFASYLIAEHIGVSGILAAVAAGMTITRAGVMRRAPLAMRLRANSTWAMLEFVFNGMVFLLLGLQLPGILESSLVAAEADPNVETWMLFTDIVLIYVALMLVRFGWLWTMKKFSVRFLKKKPMEFGSWSTRELLIASFAGVRGAITLAGVLSIPLLLPDGNVFPARYELVFLAAGVILFSLFVGVVMLPILLQHLEVADHSQQLKEERIARAATAEVAIVAIQKMEERLAADTEENIDNQLLTEVSSRVIGNLRRRADGRNDVDSSLQEENLERRFRLAALRSERAELYHLRATREISNETLQKLLHDLDLLEALLIENQ
>NZ_CP011132.1|WP_046493975.1|4890419_4891769_+|guanine/hypoxanthine-transporter-GhxP
MSTPSARTGGSLDAWFKISQRGSTVRQEVVAGLTTFLAMVYSVIVVPGMLGKAGFPPAAVFVATCLVAGLGSIVMGLWANLPLAIGCAISLTAFTAFSLVLGQQISVPVALGAVFLMGVLFTIISATGIRSWILRNLPQGIAHGTGIGIGLFLLLIAANGVGLVIKNPLDGLPVALGHFATFPVIMSLIGLAVIIGLEKLKVPGGILLTIIGISIVGLLFDPAVKFSGIFAMPSLSDENGKSLIGSLDIMGALNPVVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDGQIIDGGKALTTDSLSSVFSGLVGAAPAAVYIESAAGTAAGGKTGLTAITVGVLFLLILFLSPLSYLVPVYATAPALMYVGLLMLSNVAKIDFADFVDAMAGLVTAVFIVLTCNIVTGIMIGFATLVIGRVVSGEWRKLNIGTVVIAVALVAFYAGGWAI
>NZ_CP011132.1|WP_046493974.1|4889402_4890071_+|glutathione-S-transferase
MLTVHHLNQSRSQRILWALEELSLPYEIVRYQREKNMLAPPALKKIHPLGKSPVVEDNGAIIAESGAILDYLQDTYDREGRFKPDDPESTRQYRFWLHYAEGSLMPLLLMKLVFVSLGKPPMPFGLRTLGGALGQGVQKAYLNPQLETHARFIDAHLAGRPWFAGEHLSMADIQMSFPLFALLARGGIAELPHIRAWKERVEMRPAWQRAIQQGGPFDIPGG
>NZ_CP011132.1|WP_046493973.1|4888683_4889148_+|redox-sensitive-transcriptional-activator-SoxR
MENKLPRIKAMLTPGEVAKRSGVAVSALHFYESKGLISSIRNSGNQRRYRRDVLRYVAIIKIAQRIGIPLATISEALGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCIGCGCLSRKDCPLRNPGDRLGEEGTGARLLEDEQN
>NZ_CP011132.1|WP_046493972.1|4888274_4888598_-|superoxide-response-transcriptional-regulator-SoxS
MSHQQIIQTLIEWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVMRQTLGDYIRQRRLLLAAVELRNTERPIFDIAMDLGYVSQQTFSRVFRREFDRTPSDYRHSL
>NZ_CP011132.1|WP_046493971.1|4886685_4888272_+|EAL-domain-containing-protein
MNHRARRKVLRFLGIIMVVLLPVMLALWFSHLQATSQTSKQLSTFARLALDKTELVVLQADLARDAAEQYQGQACTPAHQQRMLNIIRGRLYINELIYAQGDHFLCSTIMAPSAPYIMPTADYKRKPNISIYYFRDTPFFTGYKMTYMQRGNYVAVINPLSYSEVMSEDPELAWGVYDTVTNTFFSVSEQAWVAQLLPLLQRHQSVFQQDDRFYTVTHSDKRPIAVIVSTSMQRFYQNLYQQLLVTLPLAIICSILLLMFWSRARQQYYSPRRMLQRALKQRQLCLHYQPIIDIKNEKCVGAEALLRWPGCKGQVMSPAEFIPLAEKEGMIAQITDYVVEEVFSDMGTFLAANPQLYISINLSASDFHSSRLIAMIADKAREHAVLAQQIKVEVTERGFIDVPKTTPVIQAFRQAGYEVAIDDFGTGYSNLHNLYSLNVDILKIDKSFIDTLTTNSTSHLIAEHIIEMAQSLRLKTIAEGVETADQVSWLLKRGVQYCQGWHFAKALPPQDFIHWLQQPPALLMQRGQ
>NZ_CP011132.1|WP_042999048.1|4885808_4886090_-|YjcB-family-protein
MATLTTGVVLLRWQLLSAVLMFLASTLNIRFRRSDYIGLAVISSGLGVVAACWFATGLLGITLMDLSAIWNNIESVMVEVMSQTPPEWPMVLT
>NZ_CP011132.1|WP_046493970.1|4882543_4885252_-|cation-transporting-P-type-ATPase
MPNSNRLHSAPCAGKKPYQLTVEEVLKNQQSQPSGLTHDEASTRLARDGLNALPEKAGKPAWLRFLAHFHDVLIYVLIAAAALTAVMGHWVDTAVILGVAVINALIGHIQENNAEKSLKSIRNMLSASAVVVRNGQHETVATTDLVVGDIVVLRAGDRIPADLRVMEAHNLRVEEAILTGESTVVDKTADALTGELPLGDRKNLLFSGTTISAGAGLGVVIASGEATELGHINQMMTGIEKHRTPLLVQMDKLGKAIFSLILTMMVGLFIFSLLLRDMPMGELLLSLISLAVAAVPEGLPAIISIILSLGVQTMARKHAIIRKLPTVETLGAMSVICSDKTGTLTMNEMTVKAIITADKNYRVQGNSYEPTGEIHVEENDALAEIAPGSLLENYLRTIDLCNDSQLIRDDQGHWGITGGPTEGALKVLAAKAMLPAVESELRSKIPFDSQYKYMATHYRIGNDERVLVTGAPDVLFTLCRLQQTANGTEAFTQPYWEAEIARYAKEGLRMVAAAWKPTRADANALTHDCLSEGLIFLGIAGMMDPPRPEAIAAIGACQQAGIRVKMITGDHPQTAMSIGGMLGIHNSHHAVTGYELEQMDDAELAEAAVTYDIFARTSPEHKLRLVKALQDKGEIVGMTGDGVNDAPALKQADVGIAMGIKGTEVTKEAADMVLTDDNFATIASAVQEGRRVYDNLKKTILFIMPTNLAQGLLIIVALLAGNLIPLTPVLILWMNMATSATLSFGLAFEAGERNIMRRPPRQSNENVMDGFAIWRVGFVGTLIAACAFMLEAWLQPRGHSPEFIRTVLLQTLVTAQWVYMLNCRVSDGFSLGRGLLMNKGIWLVSGILLLLQLAIIYVPFLQMLFGTEALPLRYWGITFAIGIVLFFIVEIEKPLTRKFRRK
>NZ_CP011132.1|WP_052747015.1|4881441_4882182_+|helix-turn-helix-transcriptional-regulator
MGNELSTHPSKGNQLGCDGFHERLRELLAKFKSTNAFAVAAGVSPSGINRLLDGGFPTLPILLALAKAGNVSVEWLSTGQEVQSNKQELVTPPSNMAVDVKGNDVDLSEFVFVPRYNVSAAAGYGAWNDEETPMFTVSFRRYWVINHLKADPSMLSVIGVYGDSMEGVLNDKDIILVNHGDRDPREGIYVLRIDGQLIVKRVQRIPGSMLRVSSTNPAYEPFTINLDNVPTDFDIVGKVVWYGRVI
>NZ_CP011132.1|WP_046493978.1|4894478_4895372_-|LysR-family-transcriptional-regulator
MDIRTLRYFVEVVRQQSFTRAAEKLFVTQPTISKMLKNLEDELNCTLLIRDGRKLLLTDTGRVVFERGLAILAEFRQLEAELSDINHLNKGLLRLGIPPMVGMLMAGPIGLFRQRYPGVELKVSEFGGLTVQQAVMNGELDVAMTALPVEEESGLATLPVFNHPLCVLVPRSGQWTTCQSISPEALAEHPLLIYNEDFALSRQLMQLFSEHEVKPRIAVRSGQWDFLAAMVQAGVGIAILPEPICERLDKNTLRWIPLESELRWQLGMIWREGVYLSHSAKAWLSCCEGFWLTSVDR
>NZ_CP011132.1|WP_046493979.1|4895475_4895886_+|CidA/LrgA-family-protein
MAVAISRVTPAVMQRLQVPVQVLLYAGLFIVAQYLVSWLHLPLPANLVGMVLMLALIVCRILPLSWVRAGARWLLAEMLLFFVPAVVAVVNYAHLLLVDGWRIFSVIAISTLMVLGATAWVVDKVYRYEISRINRD
>NZ_CP011132.1|WP_046493980.1|4895878_4896568_+|LrgB-family-protein
MTNLQLSVLCLAITLIIYFANKRLYRRFRKLPLMPLVLTPALLVLMLVLGHISWQSYIGESHWLLWLLGPATIAFAVPVYDNFAIIKRHWMSLTAGVVTATVVAVTSSVWLARLFTLPDEIQRSLAVRSVTTPFALAAAEPLGGQPDLVALFVVVTGVFGMAVGDALFLRLSIREGMAKGAGFGAASHGAGTARSYELGQQEGVVASLVMMLSGVVMVLVAPLVARLMF
>NZ_CP011132.1|WP_162200253.1|4896647_4897190_-|DUF3828-domain-containing-protein
MEWNINTAVDHAKMRALLLVSLLLMSCITHAQTPEATVRDFYHFYLTDFVADNHENPLNSAKMQQYVAKETLTRLKTIQDIEEQEIVDADYFTYCQDYAAEWIPALDVGTARDDAGGKVLDVWLGIQDGKKLKLRDYLRQEDGNWKIYRVVDVSNGFEQNIFDDNAISAARAHAATLSQH
>NZ_CP011132.1|WP_046493981.1|4897426_4899076_-|cation/acetate-symporter-ActP
MKRVLTALAATLPFAANAADAISGAVQRQPTNWQAIIMFLIFVVFTLGITYWASKRVRSRSDYYTAGGNITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSLGFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQGPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGLNYHIAVVLVGVLMMMYVLFGGMLATTWVQIIKAVLLLFGASFMAFMVMKHVGFSFNNLFTEAMAVHPKGSAIMSPGGLVKDPISALSLGLGLMFGTAGLPHILMRFFTVSDAREARKSVFYATGFMGYFYILTFIIGFGAIMLVGANPAYKDAAGALIGGNNMAAVHLANAVGGNLFLGFISAVAFATILAVVAGLTLAGASAVSHDLYANVFRKGATEREELRVSKITVLVLGVIAIILGVLFENQNIAFMVGLAFAIAASCNFPIILLSMYWSKLTTRGAMLGGWLGLLTAVVLMVLGPTIWVQILGHEKAIFPYEYPALFSISVAFLGIWFFSATDNSAEGNREREQFRAQFIRSQTGFGVEQGRAH
>NZ_CP011132.1|WP_042321140.1|4899072_4899387_-|DUF485-domain-containing-protein
MNDTIYQRIEDNARFRELVEKRQRFATILSIIMLVVYISFILLIAFAPGWLGTPLHEGTSVTRGIPIGVGVILISFVLTGIYIWRANGEFDRLNNAVLREVNAS
>NZ_CP011132.1|WP_046493982.1|4899627_4901586_-|acetate--CoA-ligase
MSQIHKHAIPANIADRCLINPEQYEAKYQQSINEPDTFWGEQGKILDWIKPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGERTAIIWEGDDASQSKQISYRELHRDVCRFANTLQDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSKLVITADEGVRAGRSIPLKKNVDDALKNPNVKTIEHVVVLKRTGGNIEWQEGRDLWWSDLIEKASAEHQPAEMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMSQVVDKHKVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGNEKCPVVDTWWQTETGGFMITPLPGATELKAGSATRPFFGVQPALVDNEGHPQEGAAEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHNIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEKQAIAMPS
>NZ_CP011132.1|WP_046493983.1|4902018_4903455_+|ammonia-forming-nitrite-reductase-cytochrome-c552-subunit
MARITLRARRFFSLIVPLFFISAVYAEQTPEPAKTVTVEAKNEVFAPQHPDQYLSWKATSEQSKREDALAEDPRLVILWAGYPFSRDYNKPRGHAYAVTDVRETLRTGAPKTAEDGPLPMACWSCKSPDVARLIQKDGEDGYFHGMWARGGPEVVNNLGCGDCHNTASPDFAKGKPELTLSRPYAERAMETIGKPFDKAGRFDQQSMVCAQCHVEYHFDGKNKAVKFPWDDGMKVEDMEKYYDAITFADWTNPLSKTPMLKAQHPEYETWSVGIHGKNNVTCIDCHMPKVQNAEGKLYTDHKIGNPFDNFPQTCANCHTQDKAALQNIVAERKKAINGLKIKVEDQLVRAHFEAKAAWDAGATEAEMKPILSDIRHAQWRWDLAIASHGIHMHAPEEGLRMLGIAMDKAADARTKLARLLATKGITHEIAIPDISTKEKAQAAIGLNMQQINADKQDFIKTVIPQWEEQARKNGLLSQ
>NZ_CP011132.1|WP_046493984.1|4903557_4904121_+|cytochrome-c-nitrite-reductase-pentaheme-subunit
MSVFRSLLTAGVLASGLLWSLSGITATPTPQESERWTVTQQRSPDAACLDCHKPDTEGMHGKHASVTNPNNKLPVTCTNCHGKPSPQHREGAKDVMRFNEPMYNVEQQNSVCLSCHLPEQLQKAFWPHDVHVTKVACASCHSLHPKQDTMQTLSDKGRVKICVDCHSDQRNNPNFNPASVPLLKEHP
>NZ_CP011132.1|WP_042999063.1|4904117_4904789_+|cytochrome-c-nitrite-reductase-Fe-S-protein
MSCSRRQFITGVGALVAVSGTAGRVVAKTLNINGVRYGMVHDESLCIGCTACMDACREVNNVPEGVSRLTIIRSEPLGTFPDVKYRFFRHSCQHCDHAPCVDVCPTGASYRDAANGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTKTADKCDFCRKTNLKAGKLPACVESCPTKALTFGNLDDPDSDISRLLRQKTTYRYKLALGTKPKVYRVPFKYGEVSQ

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Crispr_ID: NZ_CP011132_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011132_10

4994372-4994466

Orphan

Consensus_repeat	Method
TGCGGGGCGCAGCAAGTACAAAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011132_10

>merge|NZ_CP011132|10|4994372-4994466|CRISPRCasFinder
TGCGGGGCGCAGCAAGTACAAAAAATGAGCAGAACTACTGGGCGCAATAGTGGTTAAAAAATGACCTTGTTGCGGGGCGCAACAAGTACAAAAAA

>NZ_CP011132|10|9|4994372-4994466|CRISPRCasFinder
TGCGGGGCGCAGCAAGTACAAAAAA	TGAGCAGAACTACTGGGCGCAATAGTGGTTAAAAAATGACCTTGT
TGCGGGGCGCAACAAGTACAAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011132.1\|WP_032676552.1\|4998607_4998811_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011132.1\|WP_032676553.1\|4998828_4999377_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|236362
NZ_CP011132.1\|WP_000550614.1\|4987132_4988047_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP011132.1\|WP_000077899.1\|4992190_4992787_+\|DUF2857-domain-containing-protein	unknown	unknown	gnl\|CDD\|378591
NZ_CP011132.1\|WP_032676550.1\|4995405_4997415_+\|DNA-topoisomerase-III	unknown	unknown	gnl\|CDD\|236078
NZ_CP011132.1\|WP_032676546.1\|4991115_4991370_+\|TraR/DksA-C4-type-zinc-finger-protein	unknown	unknown	gnl\|CDD\|182903
NZ_CP011132.1\|WP_046494110.1\|4985107_4985836_-\|winged-helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|226233
NZ_CP011132.1\|WP_001144085.1\|4999455_4999698_+\|DUF4160-domain-containing-protein	unknown	unknown	gnl\|CDD\|379344
NZ_CP011132.1\|WP_032676543.1\|4988043_4989411_+\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|273206
NZ_CP011132.1\|WP_032676545.1\|4989407_4991123_+\|ParB-family-protein	unknown	unknown	gnl\|CDD\|213858
NZ_CP011132.1\|WP_000155614.1\|4999681_4999930_+\|DUF2442-domain-containing-protein	unknown	unknown	gnl\|CDD\|378424
NZ_CP011132.1\|WP_032676558.1\|5001988_5002648_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213202
NZ_CP011132.1\|WP_046494112.1\|4986004_4986370_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368065
NZ_CP011132.1\|WP_032676697.1\|4991362_4992106_+\|DUF2786-domain-containing-protein	unknown	unknown	gnl\|CDD\|378525
NZ_CP011132.1\|WP_032676556.1\|5000238_5001117_-\|metal-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238557
NZ_CP011132.1\|WP_032676549.1\|4993095_4994328_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379352
NZ_CP011132.1\|WP_032676551.1\|4998043_4998535_+\|DUF3577-domain-containing-protein	unknown	unknown	gnl\|CDD\|371899
NZ_CP011132.1\|WP_000818555.1\|4994669_4995392_+\|TIGR03761-family-integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|274771
NZ_CP011132.1\|WP_032676557.1\|5001119_5001992_-\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224033
NZ_CP011132.1\|WP_001178480.1\|4992786_4993017_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP011132.1\|WP_032676553.1\|4998828_4999377_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|236362	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional.	1.10147e-96
NZ_CP011132.1\|WP_000550614.1\|4987132_4988047_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	5.58345e-22
NZ_CP011132.1\|WP_000077899.1\|4992190_4992787_+\|DUF2857-domain-containing-protein	gnl\|CDD\|378591	pfam11198, DUF2857, Protein of unknown function (DUF2857). This is a bacterial family of uncharacterized proteins.	7.68619e-67
NZ_CP011132.1\|WP_032676550.1\|4995405_4997415_+\|DNA-topoisomerase-III	gnl\|CDD\|236078	PRK07726, PRK07726, DNA topoisomerase 3.	0
NZ_CP011132.1\|WP_032676546.1\|4991115_4991370_+\|TraR/DksA-C4-type-zinc-finger-protein	gnl\|CDD\|182903	PRK11019, PRK11019, DksA/TraR family C4-type zinc finger protein.	6.84688e-10
NZ_CP011132.1\|WP_046494110.1\|4985107_4985836_-\|winged-helix-turn-helix-domain-containing-protein	gnl\|CDD\|226233	COG3710, CadC, DNA-binding winged-HTH domains [Transcription].	6.66747e-15
NZ_CP011132.1\|WP_001144085.1\|4999455_4999698_+\|DUF4160-domain-containing-protein	gnl\|CDD\|379344	pfam13711, DUF4160, Domain of unknown function (DUF4160).	2.05304e-15
NZ_CP011132.1\|WP_032676543.1\|4988043_4989411_+\|replicative-DNA-helicase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP011132.1\|WP_032676545.1\|4989407_4991123_+\|ParB-family-protein	gnl\|CDD\|213858	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein. Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.	2.07497e-149
NZ_CP011132.1\|WP_000155614.1\|4999681_4999930_+\|DUF2442-domain-containing-protein	gnl\|CDD\|378424	pfam10387, DUF2442, Protein of unknown function (DUF2442). This family of bacterial and fungal proteins has several members annotated as being putative molybdopterin-guanine dinucleotide biosynthesis protein A; however this could not be verified. Hence the function is not known. This family also includes the DUF3532 that was found to be related and was merged into this family. Members of this family also fall into the NE0471 N-terminal domain-like superfamily, a family of proteins with a unique fold in SCOP:143880.	2.36359e-20
NZ_CP011132.1\|WP_032676558.1\|5001988_5002648_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213202	cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.	4.83126e-72
NZ_CP011132.1\|WP_046494112.1\|4986004_4986370_+\|hypothetical-protein	gnl\|CDD\|368065	pfam04703, FaeA, FaeA-like protein. This family represents a number of fimbrial protein transcription regulators found in Gram-negative bacteria. These proteins are thought to facilitate binding of the leucine-rich regulatory protein to regulatory elements, possibly by inhibiting deoxyadenosine methylation of these elements by deoxyadenosine methylase.	4.54038e-05
NZ_CP011132.1\|WP_032676697.1\|4991362_4992106_+\|DUF2786-domain-containing-protein	gnl\|CDD\|378525	pfam10979, DUF2786, Protein of unknown function (DUF2786). This family of proteins has no known function.	5.60735e-11
NZ_CP011132.1\|WP_032676556.1\|5000238_5001117_-\|metal-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238557	cd01137, PsaA, Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).	7.54734e-125
NZ_CP011132.1\|WP_032676549.1\|4993095_4994328_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379352	pfam13730, HTH_36, Helix-turn-helix domain.	3.67398e-06
NZ_CP011132.1\|WP_032676551.1\|4998043_4998535_+\|DUF3577-domain-containing-protein	gnl\|CDD\|371899	pfam12101, DUF3577, Protein of unknown function (DUF3577). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 143 to 307 amino acids in length.	1.24493e-62
NZ_CP011132.1\|WP_000818555.1\|4994669_4995392_+\|TIGR03761-family-integrating-conjugative-element-protein	gnl\|CDD\|274771	TIGR03761, ICE_PFL4669, integrating conjugative element protein, PFL_4669 family. Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.	3.82803e-85
NZ_CP011132.1\|WP_032676557.1\|5001119_5001992_-\|metal-ABC-transporter-permease	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	2.92326e-47

>NZ_CP011132.1|WP_032676549.1|4993095_4994328_+|helix-turn-helix-domain-containing-protein
MTIPADSIVAHTLSRMQRSLERRTDTGDVGQERSGLLFMGNVHDAFPRQLFLDTRLSPLDKTAWVMIRLYAQQNEGAVFPTYDELQVQLASAHSEKASRDTVSRVLLMLRLTGWLSLCKRVRDDHGRVRGNIYAQHDEPLGYRDAETFDPGWLTLVEESCLSRNKAVRMTALAVVNDILHDPGMRHRHSRLAIIESRLSAPATPEQMARQRQAVQSSPKSGLSKKRIKNSPNSLSPENGLSSLKPDNSQSPENGLSKKSRSYAGVRNSDCNVRSFTHSVNKKTYVPCGEQFLPDDFLNALNSEDRQMLSTQMASLPETMAKALADMLREQQALGRLNNPVGWMFSMLRRARSGELKISEDTATASSGGTISRPVESRTVPTADVPVQPAKRPSQGQVRAMIAAIRQQVQK
>NZ_CP011132.1|WP_001178480.1|4992786_4993017_+|hypothetical-protein
MQMTDFSSRQYVSPSVRRRAQRLFSAVCCGEKVFRRLTMNGYLKIDVGPFWRILSKDGGKHWWLMDHETYNREIRR
>NZ_CP011132.1|WP_000077899.1|4992190_4992787_+|DUF2857-domain-containing-protein
MSQHNLSQATTAILSSLLMDVKNGNIRRCESLGMSLEEIRALSQLSLDELHYLSQSHVSVLDVSLNHENFWLMLNQARNEQKRMLMIDRALELGGSMELIDKYFGLSPSEVSARRRLMGIESRQGRTQSLTEPQDSALWIEWKAAGLSSPDSHQALEAMMLAAEQHGLSLTAVWSRVCQWCRETTPSRKSESQQRKEA
>NZ_CP011132.1|WP_032676697.1|4991362_4992106_+|DUF2786-domain-containing-protein
MSENTKVIARIRRLMALGTRNSNPHEAARAVALAQRLMQRHGLTPDMLSLHDIQESVCQNLTSNAEKVPAWLSSLATVVCMATGCRCWFGWHIHTSCSGVKSVRRSLHFYGFSGRAEVALYIYTVLQRQLRADTDGQIAGYRKRRILKNTLRRRADQFREGWVSGVWQVLQSFAPSECENSMLQRWLAQRHTGDTLGTVNVRAAGKCRGDRAARVAGWLAGRDTEVHQGLTGAKAQQQITAGGCTHE
>NZ_CP011132.1|WP_032676546.1|4991115_4991370_+|TraR/DksA-C4-type-zinc-finger-protein
MSEDLNDEMAQASTAIFTQRGIDAVRAKVHSLRPSKEICECCGADIPAARQLAVPGVELCAACQDVKEKQDVHRAAGCRGLHHV
>NZ_CP011132.1|WP_032676545.1|4989407_4991123_+|ParB-family-protein
MSNVRSLNLGDAMLQRGKSPAQAADNNTPTVTQPVNEMAMVLTLDQLRPNPDNPRKGRNPRFEEIKASVRARGLDSIPKVTRDPDGDDVYIFSDGGNTRYQILCDLWQETGDERFYRVHTIFKPWPGRLKCLVGHLAENEVRGDLTYIEKAFGVHKARVIYEEQLGRSVTLRELSDLLGKEGYPIDNSSVSRMEDTLNYLYPHMPQLLESGMSRGQATPLLSLRSSAMKVWKSFSGDVNPECSLDDVFGAVCRCFDEPESYALDIFRDEFIGQLVKALPHPSLNYDRWLIELDPREQKRREQFGEPPPLPAPTPASEQSGGRERTSPPITTLPADTSSQPPVTGLRSGTLTTPGRPEAVPELQDNTALPGGMSVGSEPRREVQNDLFGGNPVITGQTENPDNDGEWQFKSDVNANSLVSAFGEQDETSTPSVSSVAFAATGLEPVNDIWHISALQDDIEHLQDMAYRLTFEIAEAMGCADCVREDKDHHSAGFSISENASEFTLFLAGLSGSLPNKQFNMFMFCLNFFGSQEPADTAVFDDVTVVKTMRLIRVIRRLRELQRLVVKGGENV
>NZ_CP011132.1|WP_032676543.1|4988043_4989411_+|replicative-DNA-helicase
MTSNNRRNVSGLFSQDAEQSVIGGLMLDNDCWDEVALRLDSDDFYFKVHQVIFHEMTRLVAAGRPIDLITLAESIENRGKDALEQLGGFAYLAELSKNTPSAANIVAYCDIVARYSQGRQLVAIGAEITETVKASGADIGAVMETAEQKITRLAERSEPQQAVTLLDGMEKLLTELERRCNVPDGITGTPTGFEDFDAMTSGLQAADLILIAARPSMGKTAFLISLILNSLLKKADTHAQFYSLEQPTEQILMRMVASLGSVDLTHLKNGQMDDEEWARVSNASSLLMGDLKDRLIIDDTGSLTPAMLRIRARRNARRYGHPSVIGLDYLQLMRCPDQENRTQEIAEISRSLKALAKEMGCPVVALSQLNRQLESRADKRPNNGDLRDSGALEQDADVIVFIYRDEVYHENTEDKGVAEIIVSKQRQGPIGTIRLQYEGRYTRFSANPGHTGRFA
>NZ_CP011132.1|WP_000550614.1|4987132_4988047_+|ParA-family-protein
MHLQSIDYPTLGVKPRIIPVVSTKGGEGKSTQSANLAGFLADAGIKTLLIDGDHAQPTASSIFPLEYEAPGGLYELLMQTVDLSNPDNLISRTSINNLDIIVSNDPRNFLPTAMLNAPDGRVRLRNALSHPLFNSYGVIIVDSQGSRSVMSELIILASTGTMVGIAKPILPDVREFMRGTVALMEELLPYCAFGIQLPVTKLLINCMEYDNLSVETLAEVKAIVEDKRYSAHADKIHIDLLETCIYDLTVYVLGHVKGVPVHRLEKNTRRKSDSAFTSMYQLACELFPEWKTNFDALANAGGEE
>NZ_CP011132.1|WP_046494112.1|4986004_4986370_+|hypothetical-protein
MKLSLCSYNPGAAHPGYNVSHDNLQMLAAEMGISDLAMIRGPEQFFILNLLKDHSTQGLSTRELADLCGVSIYKVRHLLLPLEKYGQVIRDKMQKHHQWFLSKDSADIDWHSNKRYFHLQQ
>NZ_CP011132.1|WP_046494110.1|4985107_4985836_-|winged-helix-turn-helix-domain-containing-protein
MRFDIEGFITFDTEDASLVNLLTGDCVELSQTSTRLLAELLNHHGDILSRNEIFQAVFDKYGARASNSNLNQYISTLRRNLSDLGVAKEIIVTVPRIGFKIAEDAIINNDREYRTPFLEEKEPETQPVEPQKTCLKRFTRIIALAIAFLLLIINPESFRADTDIQKVIKGQCVIFMPPSLSLQEVTKSFDFVPQPFDCSQQKELYIYRQQVKGALGDTVQLLLIKCDKDSCMSFYYREKNNA
>NZ_CP011132.1|WP_000818555.1|4994669_4995392_+|TIGR03761-family-integrating-conjugative-element-protein
MAEKNEKRTGALQSEMTIALHTNYAIGLWQGRQPEKQDGEKPARHGIIGMPQFFHRATLINQDSLRNNPWADVAMFNLEEKIKVASDSMTALIQQLDAEMSMLPPGITLTEVASVEPLDIQVFTRTPLGYRCVFLLVGFDQFAKKALQASHYGLITRSRRDHHLSEGGRLIRQVYGSVLSYRRIDATRFDAVENNETWKQACEVAGEPDLSVLLGEKRSAFSPPVNESSVNLLRMRYRAA
>NZ_CP011132.1|WP_032676550.1|4995405_4997415_+|DNA-topoisomerase-III
MRLFICEKPSQGRDLANVLGATRRGDGFLTGPGVTVTWAVGHLLETAPPEAYGQQYGKPWSLSALPILPSPWQVVVKKETQSQFKVIERLLRQVDDVVISTDADREGEVIARELLEYCRWDGPVQRLWLSALDEMSIRAALQDLRPGAETLGMYHAGLGRARADWLIGMNLSRLYTLLAVQSGFDGVISVGRVQTPTLALVVRRDREIATFIPKPFWQVKALLSAGGRTFPAQWVPAKVYTDEEKRCVHQNIAQQVAHLCRQAGAATVTECETKREKAAAPLAFSLGTLQQACGLLWDMSPQQVLDTAQSLYEKHKATTYPRTDCGYLPESMREEIPSVLSAIGLSDPECSSLLSGLNTSFVSRIWNDKKITAHHGIIPTRNAFKFSALSEAERRVYTLIRRNYLAQFLPLHESDITRLQFDIGGQLFRTTGRTEIVMGWKVLFSKEEEDSPGDDDLSIELPPLRKGDRCGVNGAEVVQQMTRPPAHYTFATLIGAMMNASAFVTDIALRKVLKDNAGLGTEATRAGIVEQLLNRRFIVRKGKQLRATDLGADVIDALPSQLTDPGMTALWEQALDEVAEGRLTLNDFLQRQVGWTRNLVSMGGQQRVSIRIPPTPSCPLCGGKTRLKKGQKGDFWGCTRYPDCKGIINNDTQKRKSARSSKAVKPKNN
>NZ_CP011132.1|WP_032676551.1|4998043_4998535_+|DUF3577-domain-containing-protein
MTATTTASSSTTSSSASQKKEYFNLNVSGIGYLSSIRRVQGQNGEFTCAVINALTGPTDNASYTRFDVTVAGPEATKLINRCQKAVDEEEKVLLGFVLSGLKADVFTLQSGEHSGESRPSLKARLIKVEFIKKGQEVVYTAPNASQTPEQGSAAPKDYDPNSF
>NZ_CP011132.1|WP_032676552.1|4998607_4998811_+|hypothetical-protein
MGNPFGLLASEAGYQLQIQVLSSQRGFYIGTANEMGPVSRESVEYYKTSLQADIALEKGEWTQREYD
>NZ_CP011132.1|WP_032676553.1|4998828_4999377_+|single-stranded-DNA-binding-protein
MASRGINKVILVGHLGQDPEVRYMPNSTAVTGFSIATSESWRDKQSGEMKENTEWHRVVLFGKLAEIAGEYLKKGSQVYIEGHLRTRKWTDNGGVERWTTEVVVGVNGTMQMLGSRNAPAGTGNAQQPGSAQGGWGQPQQPQPQQSAAPHNPANEPPMDFDDDIPFLGHGYGICRKAIYAIS
>NZ_CP011132.1|WP_001144085.1|4999455_4999698_+|DUF4160-domain-containing-protein
MPVILRINGFKFFFYSNEGNPLEPAHIHVRNADGEAKFWLEDEVKLSRNDGFDARTLKELTKMVQHNQTMFVEAWNDYFS
>NZ_CP011132.1|WP_000155614.1|4999681_4999930_+|DUF2442-domain-containing-protein
MTISAKNVRFDETTMWVELNDGRVMGVPIAWFPRLLNATDKERNDYELSKRGIHWDNLDEDISVDGLLAGRGDVTHVPHRVA
>NZ_CP011132.1|WP_032676556.1|5000238_5001117_-|metal-ABC-transporter-substrate-binding-protein
MKRTALFLALSMGFMAHSASAKTINVVTSFSILGDMVQQVGGEHVSVKALVGPDGDPHTFEPSPQDSAAIASADIVVVNGLGLEGRLDRLIKASGFKGTLIVASEGVKTHTMDEDGETVVDPHAWNSAANGAQYAQNIVNGLISADPEDKEALRKSGEDYIAQLKALDDWAKNRFSGIPEAKRIVLTSHDTFGYFSRAYNVRFLSAQGLSSESEASAKDVAELIEQIKADHVTTWFMENQLDPRLVKQIARATGAKPGGELYPEALSPKGGPADTYTKAFRHNVDTIADSMK
>NZ_CP011132.1|WP_032676557.1|5001119_5001992_-|metal-ABC-transporter-permease
MTLHFLIQPFIEYGFMRRALVACLALSLSTTTLGVFLFLRRMSLVGDALSHAILPGVAIGYLLSGMSLFAMATGGFIAGIVVALVAGWVSRQTPLKEDASFAGLYLGSLALGVTLVSLHGSSVDLLHLLFGSILAVDRASLIFVAAVATLTLLSLAVCYRGLVSEVFDSTWLEVNKKRLPTLFHTLFLGLLVLNLVAGFQVLGTLMVVGVMMLPAVAARCWMQTLPGILLLAGVVGVLCSWLGLSISWAIALPAGPSVVLCASIFFFFSILFGGRSRLVVTLLRHFFGKE
>NZ_CP011132.1|WP_032676558.1|5001988_5002648_-|ATP-binding-cassette-domain-containing-protein
MIELQELSVGYNHSPVTSIISGHIAVGSMTAIVGENGCGKSTLLKTLAGFLPPVNGHIIWPHGRPDTGWLAQRNTLESDFPIVVQDVVSMGLWPRVSLFRSIRRSERLRIAAALERVGLLHLAKSPIETLSGGQFQRMLFARVWLQQAPLIMLDEPLTGVDENTSHVLMSLIEEMHQRGQTILAVLHDTTRVQRYFPSVLRLESERSYWQTQVHKECVS

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Crispr_ID: NZ_CP011132_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011132_11

5412277-5412502

Orphan

Consensus_repeat	Method
GGCAAGCATCCAGCCGGATGGCGACGTAAACGTCTTATCCGGCCTACGGTTGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011132_11

>merge|NZ_CP011132|11|5412277-5412502|CRISPRCasFinder
GGCAAGCATCCAGCCGGATGGCGACGTAAACGTCTTATCCGGCCTACGGTTGGAGTAGGGTAGGTCGGATAAGCGTAGCGCCATCAGGCAAGCATCCAGCCGGATGGCGACGTAAACGTCTTATCCGGCCTACGGTTGGAATAGGGTAGGCCTGATAAGCGTAGCGCCATCAGGCAAGCATCCAGCCGGATGGCGACGTAAACGTCTTATCCGGCCTACGGTTGGA

>NZ_CP011132|11|10|5412277-5412502|CRISPRCasFinder
GGCAAGCATCCAGCCGGATGGCGACGTAAACGTCTTATCCGGCCTACGGTTGGA	GTAGGGTAGGTCGGATAAGCGTAGCGCCATCAGGCAAGCATCCAGCCGGATGGCGACGTAAACGTCTTATCCGGCCTACGGTTGGAATAGGGTAGGCCTGATAAGCGTAGCGCCATCA
GGCAAGCATCCAGCCGGATGGCGACGTAAACGTCTTATCCGGCCTACGGTTGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011132.1\|WP_162200256.1\|5419216_5425204_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|184851
NZ_CP011132.1\|WP_046497002.1\|5403823_5404942_+\|hydrogenase-2-small-subunit	unknown	unknown	gnl\|CDD\|182483
NZ_CP011132.1\|WP_046497053.1\|5427351_5429361_-\|DUF3274-domain-containing-protein	unknown	unknown	gnl\|CDD\|371665
NZ_CP011132.1\|WP_167337384.1\|5425379_5426195_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011132.1\|WP_046497042.1\|5426197_5426413_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011132.1\|WP_042998137.1\|5410138_5410387_+\|hydrogenase-maturation-factor-HybG	unknown	unknown	gnl\|CDD\|182438
NZ_CP011132.1\|WP_042324177.1\|5409766_5410108_+\|hydrogenase-maturation-nickel-metallochaperone-HypA	unknown	unknown	gnl\|CDD\|183485
NZ_CP011132.1\|WP_046497024.1\|5412627_5413497_-\|glutathione-dependent-disulfide-bond-oxidoreductase	unknown	unknown	gnl\|CDD\|183298
NZ_CP011132.1\|WP_046497012.1\|5408798_5409293_+\|HyaD/HybD-family-hydrogenase-maturation-endopeptidase	unknown	unknown	gnl\|CDD\|182481
NZ_CP011132.1\|WP_046497036.1\|5417333_5418578_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_CP011132.1\|WP_046497015.1\|5409285_5409774_+\|hydrogenase-2-assembly-chaperone	unknown	unknown	gnl\|CDD\|182480
NZ_CP011132.1\|WP_046497020.1\|5411516_5412200_+\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270259
NZ_CP011132.1\|WP_046497032.1\|5415800_5417213_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP011132.1\|WP_046497017.1\|5410464_5411517_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238562
NZ_CP011132.1\|WP_046497007.1\|5405920_5407099_+\|Ni/Fe-hydrogenase-cytochrome-b-subunit	unknown	unknown	gnl\|CDD\|236785
NZ_CP011132.1\|WP_046497047.1\|5426518_5427355_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011132.1\|WP_046497009.1\|5407095_5408799_+\|hydrogenase-2-large-subunit	unknown	unknown	gnl\|CDD\|182482
NZ_CP011132.1\|WP_046497028.1\|5413692_5415552_+\|bifunctional-glutathionylspermidine-amidase/synthase	unknown	unknown	gnl\|CDD\|182504
NZ_CP011132.1\|WP_000550614.1\|5429723_5430638_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP011132.1\|WP_042324187.1\|5404944_5405931_+\|hydrogenase-2-operon-protein-HybA	unknown	unknown	gnl\|CDD\|236786

Protein	Function_ID	Function_description	E-value
NZ_CP011132.1\|WP_162200256.1\|5419216_5425204_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|184851	PRK14849, PRK14849, autotransporter barrel domain-containing lipoprotein.	0
NZ_CP011132.1\|WP_046497002.1\|5403823_5404942_+\|hydrogenase-2-small-subunit	gnl\|CDD\|182483	PRK10468, PRK10468, hydrogenase 2 small subunit; Provisional.	0
NZ_CP011132.1\|WP_046497053.1\|5427351_5429361_-\|DUF3274-domain-containing-protein	gnl\|CDD\|371665	pfam11678, DUF3274, Protein of unknown function (DUF3274). This bacterial family of proteins has no known function.	0.00598069
NZ_CP011132.1\|WP_042998137.1\|5410138_5410387_+\|hydrogenase-maturation-factor-HybG	gnl\|CDD\|182438	PRK10413, PRK10413, hydrogenase maturation factor HybG.	9.33403e-51
NZ_CP011132.1\|WP_042324177.1\|5409766_5410108_+\|hydrogenase-maturation-nickel-metallochaperone-HypA	gnl\|CDD\|183485	PRK12380, PRK12380, hydrogenase/urease nickel incorporation protein.	1.92527e-71
NZ_CP011132.1\|WP_046497024.1\|5412627_5413497_-\|glutathione-dependent-disulfide-bond-oxidoreductase	gnl\|CDD\|183298	PRK11752, PRK11752, putative S-transferase; Provisional.	0
NZ_CP011132.1\|WP_046497012.1\|5408798_5409293_+\|HyaD/HybD-family-hydrogenase-maturation-endopeptidase	gnl\|CDD\|182481	PRK10466, hybD, HyaD/HybD family hydrogenase maturation endopeptidase.	5.32255e-103
NZ_CP011132.1\|WP_046497036.1\|5417333_5418578_+\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.72437e-18
NZ_CP011132.1\|WP_046497015.1\|5409285_5409774_+\|hydrogenase-2-assembly-chaperone	gnl\|CDD\|182480	PRK10465, PRK10465, hydrogenase-2 assembly chaperone.	3.76789e-100
NZ_CP011132.1\|WP_046497020.1\|5411516_5412200_+\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270259	cd13541, PBP2_ModA_like_2, Substrate binding domain of molybdate-binding proteins;the type 2 periplasmic binding protein fold. This subfamily contains domains found in ModA proteins of putative ABC-type transporter. ModA proteins serve as initial receptors in the ABC transport of molybdate in eubacteria and archaea. Bacteria and archaea import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). After binding molybdate and tungstate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.46172e-100
NZ_CP011132.1\|WP_046497032.1\|5415800_5417213_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	4.03097e-133
NZ_CP011132.1\|WP_046497017.1\|5410464_5411517_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238562	cd01142, TroA_e, Periplasmic binding protein TroA_e. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	7.60269e-78
NZ_CP011132.1\|WP_046497007.1\|5405920_5407099_+\|Ni/Fe-hydrogenase-cytochrome-b-subunit	gnl\|CDD\|236785	PRK10881, PRK10881, Ni/Fe-hydrogenase cytochrome b subunit.	0
NZ_CP011132.1\|WP_046497009.1\|5407095_5408799_+\|hydrogenase-2-large-subunit	gnl\|CDD\|182482	PRK10467, PRK10467, hydrogenase 2 large subunit; Provisional.	0
NZ_CP011132.1\|WP_046497028.1\|5413692_5415552_+\|bifunctional-glutathionylspermidine-amidase/synthase	gnl\|CDD\|182504	PRK10507, PRK10507, bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional.	0
NZ_CP011132.1\|WP_000550614.1\|5429723_5430638_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	5.58345e-22
NZ_CP011132.1\|WP_042324187.1\|5404944_5405931_+\|hydrogenase-2-operon-protein-HybA	gnl\|CDD\|236786	PRK10882, PRK10882, hydrogenase 2 operon protein HybA.	0

>NZ_CP011132.1|WP_046497020.1|5411516_5412200_+|molybdate-ABC-transporter-substrate-binding-protein
MHILAAGSLRAVWQSLMACYQDKDVLCDFGPAGLLRERIEAGEPCDFFASANMAHPQALLDAGRAQSVAPFATNRLCLTVRADAVREDDDWLSLLTRPDLRIGTSTAGCDPSGDYTQQLFSRMGDAGTRARGRAVALVGGRDTLPLPAGSLAAEWLISNDYTDVFIGYASYAPRLRLIETLTVVEIPEPYNPVAEYGFACLSDKGKPFADFLLSPEARLILCQQGFA
>NZ_CP011132.1|WP_046497017.1|5410464_5411517_+|ABC-transporter-substrate-binding-protein
MVKFLRQLPLLALLFSLPFMAQADRTFTDQIGRQVTVPDKVDRVVVLQHQTLNLLVQMNATDKIVGVMANWKQQLGDGYARLAPELAQKTALGDLTHVDPEQLVALHPQVVFVTNYAPQEMIDKISSLGIPVVAVSLRHDAAGEQAKLNPTMADEEQAYDQGLREGITLIGDIVNKPQEAKALIDATDKGRKLVSDRLQAIPEDQRVRAYMANPDLTTYGSGKYTGLMMAHAGALNVAASTVKGFKPVAMEQVIAWDPQVIFVQDRYPKVVDEILQSPQWQVIDAVKNHRVYLMPDYAKAWGYPMPEAMGIGELWMAKKLYPQKFTDIDMRRVANDWYQRFYRTDYQGVD
>NZ_CP011132.1|WP_042998137.1|5410138_5410387_+|hydrogenase-maturation-factor-HybG
MCIGVPGQVLAVGEDIHQLAQVEVCGIKRDVNIALICEGSPAELVGQWVLVHVGFAMSIIDEEEAKATLDALRRMEYDVTSA
>NZ_CP011132.1|WP_042324177.1|5409766_5410108_+|hydrogenase-maturation-nickel-metallochaperone-HypA
MHELSLCQSAVEIIQQQAEQHGVKRVTGVWLEIGALSCVEESAVRFSFDIVCQGTVAQGCELHIDYKPAQAWCWDCSQAVEITQHDAQCPRCHGDRLRVDTGDSLKVKSIEVE
>NZ_CP011132.1|WP_046497015.1|5409285_5409774_+|hydrogenase-2-assembly-chaperone
MSEEISGFQTAPKAQVQAAFEAIAQRSMHDLSFLHPDMPVYVSDFTLFEGQWTGCVITPWMLSALIFPGPDQLWPVRKVSEKLGLRLPYGTMTFTVGELDGVSQYLSCSLMSPLNRSLSAQEGVRLADDCARMLLSLPVSDPDAPQTSRRALLFGRRGLQNA
>NZ_CP011132.1|WP_046497012.1|5408798_5409293_+|HyaD/HybD-family-hydrogenase-maturation-endopeptidase
MRILVLGVGNILLTDEAIGVRIVEALAQRYELPDFVEILDGGTAGMELLGDMANRDHLIIADAIVSRKNAPGTLMILRDDEVPALFTNKISPHQLGLADVLSALRFTDEFPKKLTLIGVIPESLEPNIGLTPTVEAMIEPALAQVLAALRESGVEAIPREAAHV
>NZ_CP011132.1|WP_046497009.1|5407095_5408799_+|hydrogenase-2-large-subunit
MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHAIASVRAAESALNIDVPVNAQYIRNIILSAHTTHDHIVHFYQLSALDWVDITSALKADPAKASAMLNGVSTWHLNSAEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPDWLEHGKGAVNYLAAPEFPTDGKNGSFLFPGGYIENADLSSYRPISSHSDEYLIKGIQESAKHAWYKDEAPQAPWEGTTIPEYNGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLASGRESTKAKLNEIIAIYQALTGKTLEVAQLHSTLGRIIGRTVHCCELQGILQNQYNALIANIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPIADPEKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKVL
>NZ_CP011132.1|WP_046497007.1|5405920_5407099_+|Ni/Fe-hydrogenase-cytochrome-b-subunit
MSHDPKPLGGKIISKPVIIFGPLIILCMLLIVKRLVFGLGSVSDLNGGFPWGVWIAFDLLIGTGFACGGWALAWAVYVFNRGQYHPLVRPALLASLFGYSLGGLSITIDVGRYWNLPYFYIPGHFNVNSVLFETAVCMTIYIGVMALEFAPALFERMGWKVSLKRLNKLMFFIIALGALLPTMHQSSMGSLMISAGYKVHPLWQSYEMLPLFSVLTAFIMGFSIVIFEGSLVQVGLKGKGPDEKSLFIKLTNTISVMLAIFVVLRFGELIYRDKLSYAFAGDFYSAMFWLEVVLMVFPIVVLRVAKLRNDSRMLYLSALSALLGCAAWRLSYSLVAFNPGGGYHYFPTWEELLISIGFVAIEICAYIVLIRLLPILPPLKQNDHNRHEASKA
>NZ_CP011132.1|WP_042324187.1|5404944_5405931_+|hydrogenase-2-operon-protein-HybA
MNRRNFIKAASGGALLLGAAPSISHAAAENRPPIPGSLGMLYDSTLCVGCQACVTKCQDINFPMRNPEGEQTWSNNDKLSPYTNNIIQVWRSGTGVNKDQEENGYAYIKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYNKDVCTGCRYCMVACPYNVPKYDYNNPFGALHKCELCNQKGVERLDKGGLPGCVEVCPAGAVIFGTREELMAEAQKRLALKPGSEYHYPRQTVKTGDTYVHTVPKYYPHLYGEKEGGGTQVLVLTGVPYENLDLPKLDEISTGARSEHVQHTLYKGMMLPLAVLAGLTVLVRRNTKNDHHDGGDDHES
>NZ_CP011132.1|WP_046497002.1|5403823_5404942_+|hydrogenase-2-small-subunit
MTGDNTLINSHGVNRRDFMKLCAALAATMGLSSKAAAEMAESVSRPQRPPVVWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCAAWGGVAAAGVNPTGAVGLQEVLPGKTIINIPGCPPNPHNFLATVAHIITWGKPPKLDAKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETWGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGVGFHKGIHQLAHVENQTPRSEKPDVNVKEGGNISAGAIGLLGGVVGLVAGVSVMAVRELGRQQKKDNADSRGE
>NZ_CP011132.1|WP_046497024.1|5412627_5413497_-|glutathione-dependent-disulfide-bond-oxidoreductase
MSDNTYQPAKVWTWEKSNGGAFANINRPVSGPTHDKTLPVGKHPLQLYSLGTPNGQKVTIMLEELLAQGVSGAEYDAWLIRIGDGDQFSSGFVEVNPNSKIPALRDHSQNPPVRVFESGSILLYLAEKFGYFLPQDRAKRTETLNWLFWLQGAAPFLGGGFGHFYHYAPVKIEYAINRFTMEAKRLLDVLDKQLANNAFVAGDEYTIADMAIWPWFGNVVLGNVYDAAEFLDADSYKNVQRWAKEIAERPAVKRGRIVNRTNGPLNEQLHERHEARDFETQTEDKRHPA
>NZ_CP011132.1|WP_046497028.1|5413692_5415552_+|bifunctional-glutathionylspermidine-amidase/synthase
MSKGTTSQDAPFGTLLGYAPGGVAIYSSDYSSLDPRDYDDDAAFRSYIDNEYMGHKWQCVEFARRFLFLNYGAVFTDVGMAWEIFSLRFLREVVNDNILPLQAFPNGSPRAPVAGALLIWQKGGEFKDTGHVAIITQLLDNKIRIAEQNVIHTPLPPGQQWTRELEVVVENGRYTLKDTFDDTTILGWMIQTDDSRHSLPQPEIANDSLTIGAARLAEKGQFDGKWLNEQDPLQKAYVTANGHVINQDPYQYFTITESAEQELIKATNELHLMYLHATDKVLKDDNLLALFDIPKILWPRLRLSWQRRRHHMITGRMDFCMDERGLKVYEYNADSASCHTEAGLILERWAEQGYKGPGHNPAEGLINELAGAWKHSHARPFVHIMQDKDIEENYHAQFMQQALHQAGFESKILRGLDELRWDDAGQLIDGDGRLVNCVWKTWAWETAIEQVREVSETEYAAVPIRTGHTDQDVRLIDVLLRPEVLVFEPLWTVIPGNKAILPILWQLFPHHRYLLDTDFIVNDELAQTGYAVKPIAGRCGSNIDLVSHQEELLDKTSGKFAEQKNIYQQLWCLPNVAGKYIQVCTFTVGGNYGGTCLRGDESLVIKKESDIEPLIVLKG
>NZ_CP011132.1|WP_046497032.1|5415800_5417213_-|PLP-dependent-aminotransferase-family-protein
MLYIAFDRVHRHSYSKQIYKDIREKILSGNLSAEGKLPSTRECSKNLSVSRNTILTAYEMLISEGLVVSKPGSGFFISSDIIAQKLPFQCSDSLTASLSDTSIPKNAINFDSGLPALDLFPRSKWSKAATKALKEAPISALGYDDPQGRSEFRDVLRKYLQHTRGIVCDADQIIVTNGTKQGLTLVAKCLLDAQSEVWIENPTNDNVRQIFSYHTNKITPFDVDKDGIQPCLFPRKNSPALIFMTPSHQFPMGGRLPIKRRLDVIKFARENNCLILEDDYDSEFTYEGSPANSLFELDPQHVIYSGTFSKVLFPSIRLGYLVVPRHLVSRIREIKRLADHHSNSISQLTLMHFIESKELERHIRRMKREYRKRREYLLSLLHQYFGDNIKIHGDRAGMHVVAEFNGIVFTPDIIQRLQESGVYVVPVEKHALLKGKHHSKVILGYAHLSCEEIKTGLSIIKTELTLCERA
>NZ_CP011132.1|WP_046497036.1|5417333_5418578_+|MFS-transporter
MDNTEKIDQRAWHYVNLIFLMQIVGASSSPIIISLGGMVGAKLSSTPSLATLPVSLYSIGMALATLPVGYLIARFGRQSTYLTGALIAAIGGLFAAYGVYSASFLNFCIGAVLAGGYGACVQNYRFAAIDYLPRSAHPKAISRVMQGGLIAAVVGPQLVIFGQDILDVPLVGSFLSQSVLALIAIILILSVGRLTTGLVVPEEEQITAQNGRQEDNTPWQPRTMLQIIKSFRFIVAVTAGLTSYGLMMFMMTVTSMAIVDAGHSINHATLGVQWHILAMYLPSFFTGKLMTRYGKLPVTLLGFLIIALSSICYFIGNSVFIFWSGFALLGLGWNFSFIGATALVTECYRASERSKVQSLNDLLVFGASAIASLISGQLYHSLGWINLNLLTFIPIALTVLLLLRLSKKGSEGQD
>NZ_CP011132.1|WP_162200256.1|5419216_5425204_+|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MNKIYRVVWNSALKVFQVCSELSGRKSHMSLSTNNPSRSSALSPLFISLSSLGKISLLSFMIMAALSASTRAQTVIDGNQDITFDTNLDDTYYQVGLTGVGKMTVTDGAVVTGSGGSPSMIGVNNGSQGTVIVENNGKWDLNDSTLLIGNTGSGTLSVLSGGSVSANSTRIGSNSGSSGMVTVEGTGSILNTRDLRVGDYGAGTLNIRDSAVVNTAGDTMIAFDVASSGLVNVTNNGRWNLLDDANTYRGLNIGYHAEAILNINTGGTVIVGTTTLGSFGDGRGTVNVDGSGSSFNTGALRVADYGFGELNISNAGAVYSDDASMISRSAGSTGTVTLSDGSLWEMVNSSSLSVGYRGVGELNINSASTVTAGATQIGNVQGAEGTVNVNGTHSTLTTGTLAVGDVGQGKLNITNTAVVKSTGESQIGRVEESTGQVVVNNAVWDITDAGGTALKLMLGGAGTGSLDILQGGTVTSGETRVGGWTRAIGTLNVDGANSKMTTDSLIVGDSGKGDLSITNNAVVKSIGGSVVGRVNQSTGYANVESGGYWDNSSAAGVLQSLGVGVEGLGTLDVLSGGTVNAGLVTVGRWVPASGTINVSGLNAKMFTGGMIVGYAGAGTLNISDNGEVKSTGAGTISNDANSNGQVNVTTGGHWELSDDAGTSLRSLVVGHLSAGTLNINTTGTVNAGTTTLGNGVSGEGTVTVNHAGSLLSSSETIVGDKGKGTLNVSDSGEVRSSQRASIGDEAGGSGTANVNTNGLWDITSDLTVGMAGNGALNIETAGQVKAGSIGIGDSASGVGNVRVDGAGSLLQGNDVDIGSNGTGTLTLSRSSTLALNNGNIFLGTYGGSHGTLNIGAAHGENAVDAGFITGTTGIIFGNGDGTLVFNHTNSSAVGYVVNPLISGNLGTVIQDAGHTVFTGENTYSGQTQVNGGTLTVASHSSSGSTGLGSSSVAIAEEGILEILGASNSAGDYRLSNALSGSGLLRVDLASTTNAFDFADTTGAAFTGVVELNKSTFALSGDNTQALTLATLKSNAGNTTTVGDGVQQIGGLNFNGGTVIFNASLPADSQAPGQIQTQTLTAGTGNVRVTLPDPWNDPGAANPDTTLNLLEQDDTHVGMQLVAAQTVQGSGGALVLQDQNGNAIGEDESVAIAQNGTVVADGEYGIRLTTAPDDGLYVNYGLKALTIHAGKTLELAEHSGASGAAADMSAKISGDGDLAVNSTGLVSLSNALNSYSGATRVLAGTLRTDASGALGNTSELFIHSGATADLNGTAQTVGLFTGQDGSTLAFNDGSLTLENGGTSHGVLTGGGALNVTGGVFAVNGANRNLSVVTTISNGAEVSINDAAGAGSGNIVNDGTLTLNGISGEVANSMSGTGTVQVSNVSDSTLSGDNSGFSGLFSIDDSSVMTVSELRHLGSAEIVDNGQLTISSDADWTLTNVISGDGGLSKLGGGILTLTADSAGYSGVTDINAGEIALGDDATSSVAMASSQVNIHSGAVLSGFGSTAGDVNVMQDGTLQVAHTTVGGDLNNRGTVMMNRPGARPGNQLAVNGNYSGNNGLMVFNTTLGDDNSATDKMTVSGNTSGSTRVQVNNVGGTGAQTVNGIELIDVGGSSAGEFALTTGTVEAGAYAYTLARGQGSDASNWYLTSQWSGPTPASPPIVDPGAAPALRPEAGSYINNLAVASSLFNHRLHDRLGEPQYVDALRGEGVGAGSLWMRHVGGHMRSAAGEGQLKTRSNRYMMQMGGDIAQWSADGEDRWHLGVMWGYANEHSNTRSNRVGYGSDGRINGYSAGLYSTWYQNAAEKTGAYLDSWVLYNWFKNSVEADERGHDDYRSRGVTASLEGGYTLKVGEFSGSEGTVNRWYIQPQAQVTWMGVKDNAHYRHDGTRIETEGDGNIQSRLGVKTYLNSHNQRDDGKGREFQPYLEVNWLHNTETYSVKMDGERVSRDGARNLGEIRTGVEGKLGNGLSVWGNVGVQVGDKGYSDTQGMLGVKYSW
>NZ_CP011132.1|WP_167337384.1|5425379_5426195_-|hypothetical-protein
MRAFLLACGCLCAGCDQHDPRPRELPKQVIYRFDDHRYLELEGFRCEGALWYVDTKRAIRSEVVARDTPIFRISFFKYVHPSERYISIPWGDFSGFIVSKDYGQTWGDGSFSPGGGADPYGKYIPARMMDGRIKIVAGEDTRPIKEDVVSMTVVNDQAFILTRWEDLYISSKPFDDPRLNPGGEGIPYTYKDYKGILRHDRLEPGSSGMDWGWEYTSWNSVNASRPWKTNAFKPNWQNIPNKIPEVKNYTGWDHMYCDMDAGLPEKEKQKR
>NZ_CP011132.1|WP_046497042.1|5426197_5426413_-|hypothetical-protein
MDTKKYYADGKLPDKFKKMMNKPETGEKPMPTGENGVVNDYVPRRETDWHNGEWVSVTQWDQPDPVPPELL
>NZ_CP011132.1|WP_046497047.1|5426518_5427355_-|hypothetical-protein
MKIRTFLLACGCLCAGCDQHDPRPRELPKQIVYRFDDHRYLELEGFRCEGALWYVDTKRAIRSEVVARDTPIFRISFFKYVHPSERYISIPWGDFSGFIVSKDYGQTWGDGRFSPGGGADPHAYGSKGKRIPAREDDYGMTAIPGEDTSPIRKDVVSMTVVNDQAFILTRWGDLYISSKPFDDPRLNPGGEGIPYTYKDYKGILRHDRLEPGSSGMDWGWEYTSWNSVDGPDRWITDAYKPNWQNIPNKIPEVKNYTGWDHMYCDMDAGLPEKEKQKQ
>NZ_CP011132.1|WP_046497053.1|5427351_5429361_-|DUF3274-domain-containing-protein
MPCIVILVHGVNDVGEAYQNQDTGICRGLNTRLGRKDFQPHTWQPEQFMISDVEGKVANSPVIPFYWGYKPVDHSAWVEDQKLYTQAVNNLKNAGKKNDADLPYDTYQEFKEENIAAHAGEHIDNLNNWLDKQHANARGGGTFANATTSIPDIFGPGANGLSVWMVGEASRSWLNGGDWTHPVYSNPHRIYIAYAARRLADLILKIRRDSGAKNDTINIVAHSQGTIITMLANMWVKAEKQNPADCVILCHSPYSLENRWQENGQPGNQQTDDARQQTLAHFCNTMKKNKLHDGGTSHNADYISQLHDNNCLTDEGQTAWVTETYNRNNFGLVYNYFCPEDQVVSMMPIQGMGWRGIPDPLSRSMGDNIRQRVFCKDEAVGDKTGYRYIAKDIRKLDRNRVPVPEPKIKDPDKPVQDVIYLYNDVIINAPLLPTSFNFTLNGQDNNYRSAIGGNDVNISRAAMMAEAFVEEVIDIPNTPEFHALPLYQFLNNEQLSEVSALHNIVAISGQKVDVYDGDYYARHEKLKIQRRMKEDEIEAALLKGTTYSQHSSIVSNDDVPEKAMTYDLAIGQCKAYEQTEFWRDLLLQADWRRPDNPDTYTRRYYSEGKLPEEFKKMMNKPETGEKPMPTGENGVVNDYGPRRETDWRNGEWVSVTQWVQPDPVPPELL
>NZ_CP011132.1|WP_000550614.1|5429723_5430638_+|ParA-family-protein
MHLQSIDYPTLGVKPRIIPVVSTKGGEGKSTQSANLAGFLADAGIKTLLIDGDHAQPTASSIFPLEYEAPGGLYELLMQTVDLSNPDNLISRTSINNLDIIVSNDPRNFLPTAMLNAPDGRVRLRNALSHPLFNSYGVIIVDSQGSRSVMSELIILASTGTMVGIAKPILPDVREFMRGTVALMEELLPYCAFGIQLPVTKLLINCMEYDNLSVETLAEVKAIVEDKRYSAHADKIHIDLLETCIYDLTVYVLGHVKGVPVHRLEKNTRRKSDSAFTSMYQLACELFPEWKTNFDALANAGGEE

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Crispr_ID: NZ_CP011132_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011132_12

5436963-5437057

Orphan

Consensus_repeat	Method
TGCGGGGCGCAGCAAGTACAAAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011132_12

>merge|NZ_CP011132|12|5436963-5437057|CRISPRCasFinder
TGCGGGGCGCAGCAAGTACAAAAAATGAGCAGAACTACTGGGCGCAATAGTGGTTAAAAAATGACCTTGTTGCGGGGCGCAACAAGTACAAAAAA

>NZ_CP011132|12|11|5436963-5437057|CRISPRCasFinder
TGCGGGGCGCAGCAAGTACAAAAAA	TGAGCAGAACTACTGGGCGCAATAGTGGTTAAAAAATGACCTTGT
TGCGGGGCGCAACAAGTACAAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011132.1\|WP_046497099.1\|5444601_5446275_+\|PilN-family-type-IVB-pilus-formation-outer-membrane-protein	unknown	unknown	gnl\|CDD\|274177
NZ_CP011132.1\|WP_046497077.1\|5435686_5436919_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379352
NZ_CP011132.1\|WP_046497059.1\|5430634_5432002_+\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|273206
NZ_CP011132.1\|WP_046497092.1\|5442787_5444137_+\|TcpQ-domain-containing-protein	unknown	unknown	gnl\|CDD\|163460
NZ_CP011132.1\|WP_001178480.1\|5435377_5435608_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011132.1\|WP_000077899.1\|5434781_5435378_+\|DUF2857-domain-containing-protein	unknown	unknown	gnl\|CDD\|378591
NZ_CP011132.1\|WP_046497089.1\|5442046_5442289_+\|DUF4160-domain-containing-protein	unknown	unknown	gnl\|CDD\|379344
NZ_CP011132.1\|WP_000005470.1\|5433953_5434697_+\|DUF2786-domain-containing-protein	unknown	unknown	gnl\|CDD\|378525
NZ_CP011132.1\|WP_046497070.1\|5433706_5433961_+\|TraR/DksA-C4-type-zinc-finger-protein	unknown	unknown	gnl\|CDD\|224648
NZ_CP011132.1\|WP_032676553.1\|5441419_5441968_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|236362
NZ_CP011132.1\|WP_046497064.1\|5431998_5433714_+\|ParB-family-protein	unknown	unknown	gnl\|CDD\|213858
NZ_CP011132.1\|WP_032676551.1\|5440634_5441126_+\|DUF3577-domain-containing-protein	unknown	unknown	gnl\|CDD\|371899
NZ_CP011132.1\|WP_000155614.1\|5442272_5442521_+\|DUF2442-domain-containing-protein	unknown	unknown	gnl\|CDD\|378424
NZ_CP011132.1\|WP_046497047.1\|5426518_5427355_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011132.1\|WP_000550614.1\|5429723_5430638_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP011132.1\|WP_032676552.1\|5441198_5441402_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011132.1\|WP_046497084.1\|5437996_5440006_+\|DNA-topoisomerase-III	unknown	unknown	gnl\|CDD\|236078
NZ_CP011132.1\|WP_046497081.1\|5437260_5437983_+\|TIGR03761-family-integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|274771
NZ_CP011132.1\|WP_046497053.1\|5427351_5429361_-\|DUF3274-domain-containing-protein	unknown	unknown	gnl\|CDD\|371665
NZ_CP011132.1\|WP_046497095.1\|5444138_5444582_+\|type-IV-pilus-biogenesis-protein-PilM	unknown	unknown	gnl\|CDD\|369356

Protein	Function_ID	Function_description	E-value
NZ_CP011132.1\|WP_046497099.1\|5444601_5446275_+\|PilN-family-type-IVB-pilus-formation-outer-membrane-protein	gnl\|CDD\|274177	TIGR02520, putative_Type_IV_pilus_protein, type IVB pilus formation outer membrane protein, R64 PilN family. Several related protein families encode outer membrane pore proteins for type II secretion, type III secretion, and type IV pilus formation. This protein family appears to encode a secretin for pilus formation, although it is quite different from PilQ. Members include the PilN lipoprotein of the plasmid R64 thin pilus, a type IV pilus. Scoring between the trusted and noise cutoffs are examples of bundle-forming pilus B (bfpB). [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking].	5.65474e-128
NZ_CP011132.1\|WP_046497059.1\|5430634_5432002_+\|replicative-DNA-helicase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP011132.1\|WP_046497092.1\|5442787_5444137_+\|TcpQ-domain-containing-protein	gnl\|CDD\|163460	TIGR03748, conj_PilL, conjugative transfer region protein, TIGR03748 family. This model describes the conserved N-terminal region of a variable length protein family associated with laterally transfered regions flanked by markers of conjugative plasmid integration and/or transposition. Most members of the family have the lipoprotein signal peptide motif. A member of the family from a pathogenicity island in Salmonella enterica serovar Dublin strain was designated PilL for nomenclature consistency with a neighboring gene for the pilin structural protein PilS. However, the species distribution of this protein family tracks much better with markers of conjugal transfer than with markers of PilS-like pilin structure. [Mobile and extrachromosomal element functions, Plasmid functions].	5.78408e-50
NZ_CP011132.1\|WP_000077899.1\|5434781_5435378_+\|DUF2857-domain-containing-protein	gnl\|CDD\|378591	pfam11198, DUF2857, Protein of unknown function (DUF2857). This is a bacterial family of uncharacterized proteins.	7.68619e-67
NZ_CP011132.1\|WP_046497077.1\|5435686_5436919_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379352	pfam13730, HTH_36, Helix-turn-helix domain.	3.37524e-06
NZ_CP011132.1\|WP_046497089.1\|5442046_5442289_+\|DUF4160-domain-containing-protein	gnl\|CDD\|379344	pfam13711, DUF4160, Domain of unknown function (DUF4160).	5.70967e-15
NZ_CP011132.1\|WP_046497064.1\|5431998_5433714_+\|ParB-family-protein	gnl\|CDD\|213858	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein. Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.	1.65439e-149
NZ_CP011132.1\|WP_046497070.1\|5433706_5433961_+\|TraR/DksA-C4-type-zinc-finger-protein	gnl\|CDD\|224648	COG1734, DksA, DnaK suppressor protein [Signal transduction mechanisms].	5.39017e-10
NZ_CP011132.1\|WP_032676553.1\|5441419_5441968_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|236362	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional.	1.10147e-96
NZ_CP011132.1\|WP_000005470.1\|5433953_5434697_+\|DUF2786-domain-containing-protein	gnl\|CDD\|378525	pfam10979, DUF2786, Protein of unknown function (DUF2786). This family of proteins has no known function.	3.83726e-11
NZ_CP011132.1\|WP_032676551.1\|5440634_5441126_+\|DUF3577-domain-containing-protein	gnl\|CDD\|371899	pfam12101, DUF3577, Protein of unknown function (DUF3577). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 143 to 307 amino acids in length.	1.24493e-62
NZ_CP011132.1\|WP_000155614.1\|5442272_5442521_+\|DUF2442-domain-containing-protein	gnl\|CDD\|378424	pfam10387, DUF2442, Protein of unknown function (DUF2442). This family of bacterial and fungal proteins has several members annotated as being putative molybdopterin-guanine dinucleotide biosynthesis protein A; however this could not be verified. Hence the function is not known. This family also includes the DUF3532 that was found to be related and was merged into this family. Members of this family also fall into the NE0471 N-terminal domain-like superfamily, a family of proteins with a unique fold in SCOP:143880.	2.36359e-20
NZ_CP011132.1\|WP_000550614.1\|5429723_5430638_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	5.58345e-22
NZ_CP011132.1\|WP_046497084.1\|5437996_5440006_+\|DNA-topoisomerase-III	gnl\|CDD\|236078	PRK07726, PRK07726, DNA topoisomerase 3.	0
NZ_CP011132.1\|WP_046497081.1\|5437260_5437983_+\|TIGR03761-family-integrating-conjugative-element-protein	gnl\|CDD\|274771	TIGR03761, ICE_PFL4669, integrating conjugative element protein, PFL_4669 family. Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.	5.7024e-85
NZ_CP011132.1\|WP_046497053.1\|5427351_5429361_-\|DUF3274-domain-containing-protein	gnl\|CDD\|371665	pfam11678, DUF3274, Protein of unknown function (DUF3274). This bacterial family of proteins has no known function.	0.00598069
NZ_CP011132.1\|WP_046497095.1\|5444138_5444582_+\|type-IV-pilus-biogenesis-protein-PilM	gnl\|CDD\|369356	pfam07419, PilM, PilM. This family contains the bacterial protein PilM (approximately 150 residues long). PilM is an inner membrane protein that has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body.	2.78854e-19

>NZ_CP011132.1|WP_046497077.1|5435686_5436919_+|helix-turn-helix-domain-containing-protein
MTIPADSIVAHTLSRMQRSLERRTDTGDVGQERSGLLFMGNVHDAFPRQLFLDTRLSPLDKTAWVMIRLYAQQNEGAVFPTYDELQVQLASAHSEKASRDTVSRVLLMLRLTGWLSLCKRVRDDHGRVRGNIYAQHDEPLGYRDAETFDPGWLTLVEESCLSRNKAVRMTALAVVNDILHDPGMRHRHSRLAIIESRLSAPATPEQMARQRQAVQPSPKSGLSKKRIKNSPNSLSPENGLSSLKPDNSQNPENGLSKKSRTYAGVRNSDCNVRSFTHSVNKKTYVPCGEQFLPDDFLNALNSEDRQMLSTQMASLPETMAKALADMLREQQALGRLNNPVGWMFSMLRRARSGELKISEDTATASSGGTISHPVESRTVPTANVPVQPAKRPSQGQVRAMIAAIRQQVQK
>NZ_CP011132.1|WP_001178480.1|5435377_5435608_+|hypothetical-protein
MQMTDFSSRQYVSPSVRRRAQRLFSAVCCGEKVFRRLTMNGYLKIDVGPFWRILSKDGGKHWWLMDHETYNREIRR
>NZ_CP011132.1|WP_000077899.1|5434781_5435378_+|DUF2857-domain-containing-protein
MSQHNLSQATTAILSSLLMDVKNGNIRRCESLGMSLEEIRALSQLSLDELHYLSQSHVSVLDVSLNHENFWLMLNQARNEQKRMLMIDRALELGGSMELIDKYFGLSPSEVSARRRLMGIESRQGRTQSLTEPQDSALWIEWKAAGLSSPDSHQALEAMMLAAEQHGLSLTAVWSRVCQWCRETTPSRKSESQQRKEA
>NZ_CP011132.1|WP_000005470.1|5433953_5434697_+|DUF2786-domain-containing-protein
MSETTKVIARIRRLMALGTRNSNPHEAARAVALAQRLMQRHGLTPDMLSLHDIQESVCQNLTSNAEKVPAWLSSLATVVCMATGCRCWFGWHIHTSCSGVKSVRRSLHFYGFSGRAEVALYIYTVLQRQLRADTDGQIAGYRKRRILKNTLRRRADQFREGWVSGVWQVLQSFAPSECENSMLQRWLAQRHTGDTLGTVNVRVAGKCRGDRAARVAGWLAGRDTEVHQGLTGAQAQQQITAGGCTHE
>NZ_CP011132.1|WP_046497070.1|5433706_5433961_+|TraR/DksA-C4-type-zinc-finger-protein
MSEDLNDEMAQASTAIFTQRGIDAIRAKVHSLRPSKEICECCGADIPAARQLAVPGVELCAACQDVKEKQDVHRAAGCRGLHHV
>NZ_CP011132.1|WP_046497064.1|5431998_5433714_+|ParB-family-protein
MSNVRSLNLGDAMLQRGKSPAQAADNNTPTVTQPVNEMAMVLTLDQLRPNPDNPRKGRNPRFEEIKASVRARGLDSIPKVTRDPDGDDVYIFSDGGNTRYQILCDLWQETGDERFYRVHTIFKPWPGRLKCLVGHLAENEVRGDLTYIEKAFGVHKARVIYEEQLGRSVTLRELSDLLGKEGYPIDNSSVSRMEDTLNYLYPHMPQLLESGMSRGQATPLLSLRSSAMKVWKSFSGDVNPECSLDDVFGAVCRCFDEPESYALDIFRDEFIGQLVKALPHPSLNYDRWLIELDPREQKRREQFGEPPPLPAPTPASEQSGGRERTTPPVTTLPADTSSQPPVTGLRSGTLTTPGRPEAVPELQDNTALPGGMSVGSEPRREVQNDLFGGNPVITGQTENPDNDGEWQFKSDVNANALVSAFGEQDETSTPSVSSVAFAATGLEPVNDIWHISALQDDIEHLQDMAYRLTFEIAEAMGCADCVREDKDHHSAGFSISENASEFTLFLAGLSGSLPNKQFNMFMFCLNFFGSQEPADTAVFDDVTVVKTMRLIRVIRRLRELQRLAVKGGENV
>NZ_CP011132.1|WP_046497059.1|5430634_5432002_+|replicative-DNA-helicase
MTSNNRRNVSGLFSQDAEQSVIGGLMLDNDCWDEVALRLDTDDFYFKVHQVIFHEMARLVAAGRPIDLITLAESIENRGKDALEQLGGFAYLAELSKNTPSAANIVAYCDIVARYSQGRQLVAIGAEITETVKASGADIGAVMETAEQKITRLAERSEPQQAVTLLDGMEKLLTELERRCNVPDGITGTPTGFEDFDAMTSGLQAADLILIAARPSMGKTAFLISLILNSLLKKADTHAQFYSLEQPTEQILMRMVASLGSVDLTHLKNGQMDDEDWARVSNASSLLMGDLKDRLIIDDTGSLTPAMLRIRARRNARRYGHPSVIGLDYLQLMRCPDQENRTQEIAEISRSLKALAKEMGCPVVALSQLNRQLESRADKRPNNGDLRDSGALEQDADVIVFIYRDEVYHENTEDKGGAEIIVSKQRQGPIGTIRLQYEGRYTRFSANPGHTGRFA
>NZ_CP011132.1|WP_000550614.1|5429723_5430638_+|ParA-family-protein
MHLQSIDYPTLGVKPRIIPVVSTKGGEGKSTQSANLAGFLADAGIKTLLIDGDHAQPTASSIFPLEYEAPGGLYELLMQTVDLSNPDNLISRTSINNLDIIVSNDPRNFLPTAMLNAPDGRVRLRNALSHPLFNSYGVIIVDSQGSRSVMSELIILASTGTMVGIAKPILPDVREFMRGTVALMEELLPYCAFGIQLPVTKLLINCMEYDNLSVETLAEVKAIVEDKRYSAHADKIHIDLLETCIYDLTVYVLGHVKGVPVHRLEKNTRRKSDSAFTSMYQLACELFPEWKTNFDALANAGGEE
>NZ_CP011132.1|WP_046497053.1|5427351_5429361_-|DUF3274-domain-containing-protein
MPCIVILVHGVNDVGEAYQNQDTGICRGLNTRLGRKDFQPHTWQPEQFMISDVEGKVANSPVIPFYWGYKPVDHSAWVEDQKLYTQAVNNLKNAGKKNDADLPYDTYQEFKEENIAAHAGEHIDNLNNWLDKQHANARGGGTFANATTSIPDIFGPGANGLSVWMVGEASRSWLNGGDWTHPVYSNPHRIYIAYAARRLADLILKIRRDSGAKNDTINIVAHSQGTIITMLANMWVKAEKQNPADCVILCHSPYSLENRWQENGQPGNQQTDDARQQTLAHFCNTMKKNKLHDGGTSHNADYISQLHDNNCLTDEGQTAWVTETYNRNNFGLVYNYFCPEDQVVSMMPIQGMGWRGIPDPLSRSMGDNIRQRVFCKDEAVGDKTGYRYIAKDIRKLDRNRVPVPEPKIKDPDKPVQDVIYLYNDVIINAPLLPTSFNFTLNGQDNNYRSAIGGNDVNISRAAMMAEAFVEEVIDIPNTPEFHALPLYQFLNNEQLSEVSALHNIVAISGQKVDVYDGDYYARHEKLKIQRRMKEDEIEAALLKGTTYSQHSSIVSNDDVPEKAMTYDLAIGQCKAYEQTEFWRDLLLQADWRRPDNPDTYTRRYYSEGKLPEEFKKMMNKPETGEKPMPTGENGVVNDYGPRRETDWRNGEWVSVTQWVQPDPVPPELL
>NZ_CP011132.1|WP_046497047.1|5426518_5427355_-|hypothetical-protein
MKIRTFLLACGCLCAGCDQHDPRPRELPKQIVYRFDDHRYLELEGFRCEGALWYVDTKRAIRSEVVARDTPIFRISFFKYVHPSERYISIPWGDFSGFIVSKDYGQTWGDGRFSPGGGADPHAYGSKGKRIPAREDDYGMTAIPGEDTSPIRKDVVSMTVVNDQAFILTRWGDLYISSKPFDDPRLNPGGEGIPYTYKDYKGILRHDRLEPGSSGMDWGWEYTSWNSVDGPDRWITDAYKPNWQNIPNKIPEVKNYTGWDHMYCDMDAGLPEKEKQKQ
>NZ_CP011132.1|WP_046497081.1|5437260_5437983_+|TIGR03761-family-integrating-conjugative-element-protein
MAEKNEKRTGALQSEMTIALHTNYAIGLWQGRQPEKQDGEKPARHGIIGMPQFFHRATLINQDSLRNNPWADVAMFNLEEKIKVASDSMTALIQQLDAEMSMLPPGITLTEVASVEPLDIQVFTRTPLGYRCVFLLVGFDQFAKKALQASHYGLITRSRRDHHLSEGGRLIRQIYGSVLSYRRIDATRFDAVENNETWKQACEVAGEPDLSVLLGEKRSAFSPPVNESSVNLLRMRYRAA
>NZ_CP011132.1|WP_046497084.1|5437996_5440006_+|DNA-topoisomerase-III
MRLFICEKPSQGRDLANVLGATRRGDGFLTGPGVTVTWAVGHLLETAPPEAYGQQYGKPWSLSALPILPSPWQVVVKKETQSQFKVIERLLRQVDDVVISTDADREGEVIARELLEYCRWDGPVQRLWLSALDEMSIRAALQDLRPGAETLGMYHAGLGRARADWLIGMNLSRLYTLLAVQSGFDCVISVGRVQTPTLALVVRRDREIATFVPKPFWQVKALLSAGGRTFPAQWVPAKVYTDEEKRCVHQNIAQQVAHLCRQAGAATVTECETKREKAAAPLAFSLGTLQQACGLLWDMSPQQVLDTAQSLYEKHKATTYPRTDCGYLPESMREEIPSVLSAIGLSDPECSSLLSGLNTSFVSRIWNDKKITAHHGIIPTRNAFKFSALSEAERRVYTLIRRNYLAQFLPLHESDITRLQFDIGGQLFRTTGRTEIVMGWKVLFSKEEEDSAGDDDLSIELPPLRKGDRCGVNGAEVVQQMTRPPAHYTFATLIGAMMNASAFVTDIALRKVLKDNAGLGTEATRAGIVEQLLNRRFIVRKGKQLRATDLGADVIDALPSQLTDPGMTALWEQALDEVAEGRLTLNDFLQRQVGWTRNLVSMGGQQRVSIRIPPTPSCPLCGGKTRLKKGQKGEFWGCTRYPDCKGIINNDTQKRKSARSSKAVKPKNN
>NZ_CP011132.1|WP_032676551.1|5440634_5441126_+|DUF3577-domain-containing-protein
MTATTTASSSTTSSSASQKKEYFNLNVSGIGYLSSIRRVQGQNGEFTCAVINALTGPTDNASYTRFDVTVAGPEATKLINRCQKAVDEEEKVLLGFVLSGLKADVFTLQSGEHSGESRPSLKARLIKVEFIKKGQEVVYTAPNASQTPEQGSAAPKDYDPNSF
>NZ_CP011132.1|WP_032676552.1|5441198_5441402_+|hypothetical-protein
MGNPFGLLASEAGYQLQIQVLSSQRGFYIGTANEMGPVSRESVEYYKTSLQADIALEKGEWTQREYD
>NZ_CP011132.1|WP_032676553.1|5441419_5441968_+|single-stranded-DNA-binding-protein
MASRGINKVILVGHLGQDPEVRYMPNSTAVTGFSIATSESWRDKQSGEMKENTEWHRVVLFGKLAEIAGEYLKKGSQVYIEGHLRTRKWTDNGGVERWTTEVVVGVNGTMQMLGSRNAPAGTGNAQQPGSAQGGWGQPQQPQPQQSAAPHNPANEPPMDFDDDIPFLGHGYGICRKAIYAIS
>NZ_CP011132.1|WP_046497089.1|5442046_5442289_+|DUF4160-domain-containing-protein
MPVILRINGFKFFFYSNEGNPLEPAHIHVRNADGEAKFWLENEVKLSRNDGFDARTLKELTKMVQHNQTMFVEAWNDYFS
>NZ_CP011132.1|WP_000155614.1|5442272_5442521_+|DUF2442-domain-containing-protein
MTISAKNVRFDETTMWVELNDGRVMGVPIAWFPRLLNATDKERNDYELSKRGIHWDNLDEDISVDGLLAGRGDVTHVPHRVA
>NZ_CP011132.1|WP_046497092.1|5442787_5444137_+|TcpQ-domain-containing-protein
MVKINLQTRYRLGAITLCLLAAGCTDFSSRSEPMSRLQGSPRVQDLYQNRSPEVVRYDRYILASTRPVDAQRDPLNQIIDIRMPLQMVNTIGEGMRYVMLESGYSLCSGEPGVFSELFVKPLPAVQRSIGPVKLGDALQILAGPAWRMRVDDLNREICFVLRDEYRHLALSTTGPLQASVASHGTGKSASTGTLLNSSKGLSGTGNNSYPLPPARPESSILSPGTPKVTSQAVSPLSVATTAKTPRNPFSASEPGEKSTVPVQKTQAGPAAKLTSGKVKPSTELAPAPAPSALSVASTPLNKAALGVPLTPSGAVKPGGTVQNSNPPSTVISPTAPVSGKTVFTPGALLSSLPDGQAWTAQAGTTLKETLIQWATSVRCESGSSPTWVVIWPTPVNYRIDVPFTLRGNFESIIVQLFRLYRPAEKPLYAAPNRLQCLVFVDDKPIQDGK
>NZ_CP011132.1|WP_046497095.1|5444138_5444582_+|type-IV-pilus-biogenesis-protein-PilM
MGYALPVFALCLVIILIAGDAQHHSSEHVRLALQQTQPEQLAADMLRTADVVNNWRHGRSITDGPVSTALTGMLPLPDSRIKSIIQNGRLWIWVPETDGVYAALRARSVTSALALTVSGGHLRMADGTDMNLSLPSGVTEGSIVYLN
>NZ_CP011132.1|WP_046497099.1|5444601_5446275_+|PilN-family-type-IVB-pilus-formation-outer-membrane-protein
MPRIPFCLTVLTAAFVLSSCSLNEISKIDKEAVGQADTAQRVLQSRQSISQPTVVWMDKPWVNLQPVTPVVSTPDEKNLPPCQITINRPDGISLPELGQRITALCGIRVSITPDAFAALSNVSTGSVVTSQMSGQLPAPDDNGRVPLAQMGATSAQPVSVQPSPALMRGLKFQGDVRDLLDVEASGYGLSWRSDGNGVYFYRQDTRTFQLVILNTKVNSSASINSGSGNQLGSGGGTSGGTSGDISSNQKTDYGMNSDLYDDIRKTIEQMLTPKSGRFWLSAATGTLSVTDTPDVLDRIGRYIEYQNKVLSRQVQLNIQIVSVNQTRNEQLGLDWGLVYKSLHNFGATLTGSMANASTSAGSAGISILDTATGNAAKFSGSSLLIKALSEQGNVSMALNQTDPTANLTPVAYQLSNQQGVLTSSSSTATANVGVTSSQTVTTITTGLFMTMLPFIQENGDVQLQFAFSYTSPPQIEKFISRDGNTRNDIPNTSTQGLARKVNLRSGQTLVLTGSEQQNLSANKQGTFTPDNFILGGGQNGTRGRNTLVIMITPVLLR

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Crispr_ID: NZ_CP011132_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011132_13

5571401-5571536

Orphan

Consensus_repeat	Method
GCTAAAGCGCAATAATCGAAAATGCCGGATGGCGCTGCGCTTATCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011132_13

>merge|NZ_CP011132|13|5571401-5571536|CRISPRCasFinder
GCTAAAGCGCAATAATCGAAAATGCCGGATGGCGCTGCGCTTATCCGGCCTACAAATACGCGTCCTGTAGGCCAGCAACCGGCAACGGCTGCTAAAGCGCAATAATTGAAAATGCCGGATGGCGCTGCGCTTATCC

>NZ_CP011132|13|12|5571401-5571536|CRISPRCasFinder
GCTAAAGCGCAATAATCGAAAATGCCGGATGGCGCTGCGCTTATCC	GGCCTACAAATACGCGTCCTGTAGGCCAGCAACCGGCAACGGCT
GCTAAAGCGCAATAATTGAAAATGCCGGATGGCGCTGCGCTTATCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011132.1\|WP_046497352.1\|5573481_5575419_+\|murein-transglycosylase	unknown	unknown	gnl\|CDD\|183236
NZ_CP011132.1\|WP_046497324.1\|5562877_5564101_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP011132.1\|WP_046497373.1\|5576461_5577109_+\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase-GpmB	unknown	unknown	gnl\|CDD\|179583
NZ_CP011132.1\|WP_046497362.1\|5575896_5576412_-\|inosine/xanthosine-triphosphatase	unknown	unknown	gnl\|CDD\|235336
NZ_CP011132.1\|WP_046497343.1\|5569942_5570578_+\|arginine-exporter-ArgO	unknown	unknown	gnl\|CDD\|236463
NZ_CP011132.1\|WP_046497314.1\|5558956_5560288_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011132.1\|WP_046497332.1\|5565790_5567053_+\|DUF1116-domain-containing-protein	unknown	unknown	gnl\|CDD\|377673
NZ_CP011132.1\|WP_046497320.1\|5561637_5562543_-\|carbamate-kinase	unknown	unknown	gnl\|CDD\|181831
NZ_CP011132.1\|WP_046497355.1\|5575476_5575803_+\|trp-operon-repressor	unknown	unknown	gnl\|CDD\|179289
NZ_CP011132.1\|WP_046497335.1\|5567092_5567920_+\|DUF2877-domain-containing-protein	unknown	unknown	gnl\|CDD\|378658
NZ_CP011132.1\|WP_046497348.1\|5571602_5573270_-\|energy-dependent-translational-throttle-protein-EttA	unknown	unknown	gnl\|CDD\|236992
NZ_CP011132.1\|WP_046497392.1\|5580844_5582206_+\|cell-envelope-integrity-protein-CreD	unknown	unknown	gnl\|CDD\|226859
NZ_CP011132.1\|WP_046497341.1\|5568937_5569798_+\|small-conductance-mechanosensitive-channel-MscS	unknown	unknown	gnl\|CDD\|182386
NZ_CP011132.1\|WP_046497379.1\|5578186_5578660_+\|protein-CreA	unknown	unknown	gnl\|CDD\|236752
NZ_CP011132.1\|WP_046497328.1\|5564113_5565775_+\|acyl-CoA-synthetase-FdrA	unknown	unknown	gnl\|CDD\|180395
NZ_CP011132.1\|WP_046497385.1\|5579361_5580786_+\|two-component-system-sensor-histidine-kinase-CreC	unknown	unknown	gnl\|CDD\|236846
NZ_CP011132.1\|WP_046497316.1\|5560300_5561524_+\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238618
NZ_CP011132.1\|WP_046497339.1\|5567876_5568815_+\|HTH-type-transcriptional-activator-AllS	unknown	unknown	gnl\|CDD\|182237
NZ_CP011132.1\|WP_046497382.1\|5578672_5579362_+\|two-component-system-response-regulator-CreB	unknown	unknown	gnl\|CDD\|236838
NZ_CP011132.1\|WP_046497376.1\|5577105_5577975_-\|MDR-efflux-pump-AcrAB-transcriptional-activator-RobA	unknown	unknown	gnl\|CDD\|185076

Protein	Function_ID	Function_description	E-value
NZ_CP011132.1\|WP_046497324.1\|5562877_5564101_+\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.85726e-62
NZ_CP011132.1\|WP_046497373.1\|5576461_5577109_+\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase-GpmB	gnl\|CDD\|179583	PRK03482, PRK03482, phosphoglycerate mutase GpmB.	3.05336e-157
NZ_CP011132.1\|WP_046497362.1\|5575896_5576412_-\|inosine/xanthosine-triphosphatase	gnl\|CDD\|235336	PRK05074, PRK05074, non-canonical purine NTP phosphatase.	2.15361e-114
NZ_CP011132.1\|WP_046497343.1\|5569942_5570578_+\|arginine-exporter-ArgO	gnl\|CDD\|236463	PRK09304, PRK09304, arginine exporter ArgO.	3.75114e-135
NZ_CP011132.1\|WP_046497376.1\|5577105_5577975_-\|MDR-efflux-pump-AcrAB-transcriptional-activator-RobA	gnl\|CDD\|185076	PRK15121, PRK15121, MDR efflux pump AcrAB transcriptional activator RobA.	0
NZ_CP011132.1\|WP_046497332.1\|5565790_5567053_+\|DUF1116-domain-containing-protein	gnl\|CDD\|377673	pfam06545, DUF1116, Protein of unknown function (DUF1116). This family contains hypothetical bacterial proteins of unknown function.	2.92338e-132
NZ_CP011132.1\|WP_046497352.1\|5573481_5575419_+\|murein-transglycosylase	gnl\|CDD\|183236	PRK11619, PRK11619, lytic murein transglycosylase; Provisional.	0
NZ_CP011132.1\|WP_046497355.1\|5575476_5575803_+\|trp-operon-repressor	gnl\|CDD\|179289	PRK01381, PRK01381, trp operon repressor.	3.68741e-53
NZ_CP011132.1\|WP_046497335.1\|5567092_5567920_+\|DUF2877-domain-containing-protein	gnl\|CDD\|378658	pfam11392, DUF2877, Protein of unknown function (DUF2877). This bacterial family of proteins are putative carboxylase proteins however this cannot be confirmed.	5.94253e-31
NZ_CP011132.1\|WP_046497348.1\|5571602_5573270_-\|energy-dependent-translational-throttle-protein-EttA	gnl\|CDD\|236992	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed.	0
NZ_CP011132.1\|WP_046497392.1\|5580844_5582206_+\|cell-envelope-integrity-protein-CreD	gnl\|CDD\|226859	COG4452, CreD, Inner membrane protein involved in colicin E2 resistance [Defense mechanisms].	0
NZ_CP011132.1\|WP_046497341.1\|5568937_5569798_+\|small-conductance-mechanosensitive-channel-MscS	gnl\|CDD\|182386	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS.	0
NZ_CP011132.1\|WP_046497379.1\|5578186_5578660_+\|protein-CreA	gnl\|CDD\|236752	PRK10756, PRK10756, protein CreA.	1.48813e-116
NZ_CP011132.1\|WP_046497328.1\|5564113_5565775_+\|acyl-CoA-synthetase-FdrA	gnl\|CDD\|180395	PRK06091, PRK06091, membrane protein FdrA; Validated.	0
NZ_CP011132.1\|WP_046497385.1\|5579361_5580786_+\|two-component-system-sensor-histidine-kinase-CreC	gnl\|CDD\|236846	PRK11100, PRK11100, sensory histidine kinase CreC; Provisional.	0
NZ_CP011132.1\|WP_046497316.1\|5560300_5561524_+\|amidohydrolase-family-protein	gnl\|CDD\|238618	cd01293, Bact_CD, Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.	2.64288e-148
NZ_CP011132.1\|WP_046497339.1\|5567876_5568815_+\|HTH-type-transcriptional-activator-AllS	gnl\|CDD\|182237	PRK10094, PRK10094, HTH-type transcriptional activator AllS.	0
NZ_CP011132.1\|WP_046497382.1\|5578672_5579362_+\|two-component-system-response-regulator-CreB	gnl\|CDD\|236838	PRK11083, PRK11083, DNA-binding response regulator CreB; Provisional.	5.987e-156
NZ_CP011132.1\|WP_046497320.1\|5561637_5562543_-\|carbamate-kinase	gnl\|CDD\|181831	PRK09411, PRK09411, carbamate kinase; Reviewed.	0

>NZ_CP011132.1|WP_046497343.1|5569942_5570578_+|arginine-exporter-ArgO
MISYYFQGLALGAAMILPLGPQNAFVMNQGIRRQYHIMIALLCAVSDLLLICAGIFGGSALLMQSPWLLALVTWGGVAFLLWYGFGALKTAMSSNLELASAEVMKQGRWKIIATMLAVTWLNPHVYLDTFVVLGSLGGQLDVEPKRWFALGTVSASFLWFFGLALLAAWLAPRLRTAKAQRIINTLVGLVMWFIAFQLAKEGVAHVHALLN
>NZ_CP011132.1|WP_046497341.1|5568937_5569798_+|small-conductance-mechanosensitive-channel-MscS
MEDLNVVDSINGAGTWLVRNQELLLSYAVNIVAAVAIVIVGMIVARLVSNTVNRLMVARHIDATVADFLSALVRYGIVAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLNVQIFSTTMRTVDGKIVVIPNGKIIAGNIINFSREPVRRNEFTVSVAYDADIDKVKQILTGIIESDDRILKDREMTVRLNELGASSLNFVVRVWSNSGDLQNVYWDVLERIKREFDAAGIRFPYPQMDVNFKRVKAGAAE
>NZ_CP011132.1|WP_046497339.1|5567876_5568815_+|HTH-type-transcriptional-activator-AllS
MLDQETIRTFIWVAETESFSRAANSLHKTPAAISYRIKTLEEQVGTQLFLRTTRSVSLTLAGQHLLEHCRQWLNWLDAMPDELQQINAGVERQVNIVVNNLLYQPQTTADLLTWLHQQFPFTRFQISRQVYMGVWDSLLYDDYQLAIGVTGSESLSNNISLLPLGDISWQFVVAQNHPLASHPATVLSDDMLRRYPAINIEDTSRTLTRRVAWLLSGQKEIKVPDLSTKLACHLSGLGVGFLPERLCRPYVESGALVARSVANPRQPSPLSIAWKNAGSGKVVSEIAEIFKQKHSLVSGFLRMVDSPVEQKK
>NZ_CP011132.1|WP_046497335.1|5567092_5567920_+|DUF2877-domain-containing-protein
MNTFNALACTGLNRLPDGEWTLHSRFSQAINFIHASGELLTLYRYGKGMGPTGVLLGRAPFSYLATVAQLYKSGSQLSGQGITLRARRQLRLQLNPADSAPVGLSRCRQQSGLCGALNQPLNSMPFYSEIMEALACWHHGGEPDWRWLIGRGPGLTPSGDDMLTGMLAVFIAAEKPIHLFLPSIDQLALLTTSVSCSYLNSARLGEFSTPVLGVMRSLQTGRHTDRALGRLLAVGHTSGTDTVLGIALAQHWLQMADSRGMHARSGNNTYLYLGG
>NZ_CP011132.1|WP_046497332.1|5565790_5567053_+|DUF1116-domain-containing-protein
MYSSIAQANDAIIERIKAARPHWVAVRPAKEAVAELSSGRKLLHAGPPIGWEEMTGPMRGACIGASLFEGWAASEEEAVGLLSRGEVEFIPCHHVGAVGPMGGITSANMPVLIVRDVIHGNQSCCNLNEGIGKVMRFGAYGEDVQTRLRWMRDTLAPVLQDALSNMENGIDLTALMAQAITMGDEFHQRNIAASSLLLRTLSPVIAGLDRPKAEITEVLQFLSVTDQFFLNLAMAYSKAVMDAAAEIKAGSVVTAMTRNGREFGIRVSGTGDRWFTAPVNTPQGLFFTGYSQADANPDIGDSAITETLGIGGAAMIAAPGVTRFVGTGGMGAALETSEEMAEIYLASNPLFQIPSWDFKGACLGLDIRRVVETGITPLINTGIAHRDAGIGQVGAGTVRAPLLCFEKALEALAQEHHITA
>NZ_CP011132.1|WP_046497328.1|5564113_5565775_+|acyl-CoA-synthetase-FdrA
MIYAFIKKGSFQDSVSLMIISRKLSERPEVDQVSVMMGTPANKAMLNSTGFWHDDFAEATPNDICVAVRTHDEQSGILDVIREQLEKELNAIASASGSSQQLLKARRWESACQKLPQANLLLVSVAGEYAASVAKEGLLAGKNVMMFSDNVPLAQEVELKTLAREKGLIVMGPDCGTAMIAGSPLAFANVLPDGGIGVVGASGTGIQEITSQIALHQQGISHAIGLGGRDLSADVGGISALTALEMLAADDATQVIAFVSKPPSPQVRTRIIDAMQKVGKPVVALFLGSKPEQRREGNVWLANSLSDAAQLAVLLMRVAQQRVIQPEVAGKGIYGLYAGGTLAAEAAMLLSAGLGVPVSESHDAGVMLDAQGHRIVDLGDDSYTLGRPHPMIDPTTRSIEIEKLAAMPDVGVLLLDVVLGYGACADPAGAVVEAVEKVRAQRAAPLVTIATMTGTDADPQGRSGQIDILREAGIAVVETLEEAVLLAISLTRHQDATPSVEHNALLDGIQVINAGLRSFALDLQSSGTPVVHYQWAPIAGGNARLASLLKQLH
>NZ_CP011132.1|WP_046497324.1|5562877_5564101_+|MFS-transporter
MSESCEVTEVTKKKGIPAWWVTIFLFWLGWIFMYADRTILNPVMGELEKEFGLSGTQLGILNSVFYFSYALLQVPAGILGDKIGKKKVLVPGFILFGVFTAVTGWAKTWYTLLFARVVTGAGEGTYYGPQYGLSSEQIPKKYRSLGSAIINSGMAFGIALGLMSSSWLVYDQGHSWRMPFYAMAVPSVLIGVAIWLFVKEKKRPVEVDGVQVKKGKFSDLLKNRNLILTYIMVFCSLFGFFVILTWLPYYLQSERGIAGSETGFISSLVAWISIPGALLFSSLSDKLGKRKPLIMFLVPVAIISMLSIIWMPNMTGVIVALCVYGLVGKLALDPVLVALVADSVDENNYSTAFGLFNFIGMSSSILAPIIAGAARDITGSLASSFYVSATLLGIGLVAMMFLKEKRT
>NZ_CP011132.1|WP_046497320.1|5561637_5562543_-|carbamate-kinase
MKKKLVIALGGNALLQRGEVLSAENQQRSIQVFAQMVTTLAHDYQLVIVHGNGPQVGLLALQNAAYTEAPAWPLDILVAESQGMIGVAIAQALTQNAGAAPVTTLMTRVEVDPQDEAFCTPGKYIGPVYQPEQQAELEKRYGWTMKADGQYIRRVVPSPMPQAILDSEAIQALMAAGHTVICCGGGGVPVVAQGSGYQGTEAVIDKDLTAAVLAHAINADHLLILTDADAVYEHWGTAQARALRHVTTEELAPFAAPDGAMGPKAAAVIQFVKQTGRKAFIGALKDAPQILAGEKGTLVHC
>NZ_CP011132.1|WP_046497316.1|5560300_5561524_+|amidohydrolase-family-protein
MDLIFRQVNIKDGSPRVDVAIKNGKIAEIAPSISAPAKQEVQGNGNVLLPGFVESHLHLEKAFIMNRKANRSGTLKEAIAVTAALKPTFTREDILERSTQVLRALVQAGSTHVRAHAEFDPSQGFTGFDVVLELRDKFKDIIDIQVVAFPQEGILKLDGMKEMMVEAMKKGADVVGGIPYNDLPANEHIDYVFKLAKEFDKDLDFHQDFADNADNMTIEYLAHKTIQEGYQGRVSVGHLTSLAAVDPTKRDEIIELIRSAGISVMCLPATDLHMGARNDTHNVRRAVTPLRALRDGGVNVCLATNNIRNAFTPYGSGDLLDIAQLALPACHLGGADDQSTVISMLTTNPARALGLKSYGLEVGKDADLVLLDTQTVADVILDRPTRLMVLKRGNVVATATCHKSVFF
>NZ_CP011132.1|WP_046497314.1|5558956_5560288_+|hypothetical-protein
MSRKTVGIFIAIALCCLLSWIAQGQPGTGFYKVVTVIPLFLILGLLFLQVDMLVAALAGGVAAMILGQIGLAGTSKMMLDTVPKMLAITVPILNSAVATAVFKAGGYTAALTLVRRKIGGRIEFIGAFIVILQAAATYMSGIGGGSAMVVAPLAFAAVGVIPQVIAGMSIATAASFTTSPASLESSIVSSLSGTPVGEYVAVMRPYWLLFCVIGIIIAFIGTRRRKALFTTEESDEMKSMSNAQLWRLTIPAIFLLFAVIAGPMVNELIGTPLFGPLLYTIVTIALIYFCSSLDLNKSVAAMVDGSQYILTRLFSVGLFLTFINIIGETGAFTTIAGVVQSAPSGIVVPVAVLAGFLIGVPAGAYVGSILTLVLPVTVALGFTPIQIGMVAIGVGFGSQLSLVNITMQALSYGFQIPIINVSRGNLPYVGSCTILLLLLSFFV
>NZ_CP011132.1|WP_046497348.1|5571602_5573270_-|energy-dependent-translational-throttle-protein-EttA
MAQFVYTMHRVGKVVPPKRHILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDTDIEGEARPQPGIKIGYLPQEPKLNPEHTVRESVEEAVAEVVNALKGLDEVYAKYAEPDADFDKLAAQQGKFEEIIQAHDGHNLNVQLERAADALRLPDWDAKVATLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDFEGTVVAITHDRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQRLAQEASQEAARRKSIEKELEWVRQGAKGRQSKGKARLARFEELNSTEYQKRNETNELFIPPGPRLGDKVVEVSHLRKSYGDRVLIDDLSFSVPKGAIVGIIGPNGAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVGGNMLLLDEPTNDLDIETLRALENALLEFPGCAMVISHDRWFLDRIATHILDYQDEGKVEFFEGNFTEYEEYKKRTLGADALEPKRIKYKRIAK
>NZ_CP011132.1|WP_046497352.1|5573481_5575419_+|murein-transglycosylase
MDKAQRFTWRLIVAGVCLLTLSQAARADSLDEQRNRYAQIKQAWDNRQMDVVEQMMPGLKNYPLYPYLEYRQITDDLMNQPTVTVTNFVRANPTLPPARTLESRFVNELARREDWRGLLAFSPQKPRTTEAQCNYYYAKWNTGQAEEAWQGAKELWLTGKSQPNACDKLFSVWRASGTQDPLSYLERIRLAMKAGNTGLVTVLAGQMPAEYQTIASAIITLANDPNSVMTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLVQAQQLNEDQTQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTTLVERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGRENEAKEILHALMQQRGFYPMVAAQRLGEEYVLKIDKAPGNVDNALTQGPEMARVRELMYWNLDNTARSEWANLVTSRTMTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYQDIFTRYTRGKDIPQSYAMAIARQESAWNPKVKSPVGASGLMQIMPGTATHTVKMFSIPGYSSQNQLLDPEMNINIGTSYLQYVYQQFGNNRIFSSAAYNAGPGRVRTWLGNSAGRIDAVAFVESIPFSETRGYVKNVLAYDAYYRYFMGQKDTLMSDSEWQRRY
>NZ_CP011132.1|WP_046497355.1|5575476_5575803_+|trp-operon-repressor
MTQHSPYSSAMAEQRNQEWLRFVELLRQSYAEDLHLPLLQLMLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRGSNSLKSAPVELRQWLEAVLLKNA
>NZ_CP011132.1|WP_046497362.1|5575896_5576412_-|inosine/xanthosine-triphosphatase
MHHVVSATTNPAKIQAILQAFNEIFGEGSCHIESVDVDSGVPEQPFGSSETRAGARNRVENARRARPDADFWVAIEAGIDEDATFSWVVVENATQRGEARSATLPLPAVILEKVREGEALGPVMSRYTGIDKIGRKEGAIGVFTAGKLTRASVYHQAVILALSPFHNAIYQ
>NZ_CP011132.1|WP_046497373.1|5576461_5577109_+|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase-GpmB
MLQVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAVQVGERAKSLGITHVISSDLGRTRRTAEIIAQACDCDITLDARLRELHMGVLEKRHIDTLTAEEENWRRQLVNGTVDGRIPEGESMQELNDRVHGALAACLDLPQGSRPLLVSHGIALGCLVSTILGLPAYAERRLRLRNCSISRVDYQESLWLAPGWVVETAGDISHLDAPALDELQR
>NZ_CP011132.1|WP_046497376.1|5577105_5577975_-|MDR-efflux-pump-AcrAB-transcriptional-activator-RobA
MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFSQTPALYRRSPEWSAFGIRPPLRLGEFAIPEHKFVTLEDTPLLGVTQSYSCSLEQISDFRHEMRIQFWHNFLGHAPAIPPVLYGLNETRPSLEKDDEQEVFYTTALPQEQANGYVQSAQPVLLQGGEYVMFTYDGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCEFLIPIRR
>NZ_CP011132.1|WP_046497379.1|5578186_5578660_+|protein-CreA
MKYKSLVLSALLFMLAPLASAEQIGSVDTVFKIFGPDHKIVVEAFDDPDVKNVTCYVSRAKTGGIKGGLGLAEDTSDAAISCQQVGPVELSDRIKNGKAQGEVVFKKRTSLVFKSLQVVRFYDAKRNALAYLAYSDKVVDGSPKNAISAVPIMPWRE
>NZ_CP011132.1|WP_046497382.1|5578672_5579362_+|two-component-system-response-regulator-CreB
MQQVSVWLVEDEQGIADTLIYMLQQEGFSVEAFERGLPALDKARHQCPDVAILDVGLPDISGFELCRRLLEHHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKFSTPSPIVKTGHFELNELAAEVAWFGTPLSLTRYEFLLLKTLLLSPGRVYSRQQLMDIVWADAQDTFDRTVDTHIKTLRAKLRAVNPTLSPINTHRGMGYSLRSL
>NZ_CP011132.1|WP_046497385.1|5579361_5580786_+|two-component-system-sensor-histidine-kinase-CreC
MRIGMRLLLGYFLIVAVAAWFVLSIFVQEIKPGVRRATEGTLIDTATLLAALARDDLLSGNPEHGQLAQAFTQLHNRPFRANINGINKVRNEYHVYMTDAQGNVVFDSINKAVGQDYSRWNDVWLTLRGQYGARSTPQNPADPESSVMYVAAPIVDNGKIIGVLSVGKPNAAMAPVIKRSERRILWASAILLGIALVIGAGMVWWINRSIARLTRYADSVTENQPMPLPELGSSELRKLAQALESMRLKLEGKNYIEQYVYALTHELKSPLAAIRGAAEILRENPPPDIVKRFTDNILSQNARMQALVETLLRQARLENRQDIALSAVAVDELFAQISDARAIQLASKAISLEIVPSALSVCAEPALLEQALGNLLDNAIDFTPAGGTITLSAQAHAEKVTLTVADTGAGIPDFALPRIFERFYSLPRENGLKSSGLGLAFVREVARLLKGSVELRNRPEGGVEAMLTLHRHFT
>NZ_CP011132.1|WP_046497392.1|5580844_5582206_+|cell-envelope-integrity-protein-CreD
MLKSPLFWKIVTLGGAIMLLLIPLMMVRQIIVERADYRDAVEDAIRQSTSGSQKVVGPLIAVPVTELYTVLENEKEVQHKRSFIHFWLPESLMVEGNQNVEPRKVGIYEGQVWHTDVTLKAEFDVARLSELNRPNVTLGKPFIVVGVGDARGIGVVKAPKANGVALAVEPGTGLTGRGEGLHIPLPDEQWAMRDVNLAMSLNLSGTGSFSVVPVGRSSQMTLTSNWPHPNFLGDFLPDKREISESGFQAQWQSSWFANNLGDRFVDAQKNGWYNLPSFSVAVATPADQYQLTDRATKYAILLITLTFMAFFVFETLTGKRLHPMQYLLVGLSLVMFYLLLLALSEHIGFTLAWVVASLVGALMNGVYLQAVLQGWRSSVIFTLALLVLDGVMWVLLRSEDSALLLGTSVLLLALGSVMFLTRHLDWYAFSRTKPTPTAPKPTAPVDDALRVWK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP011132_2	2.1\|798241\|56\|NZ_CP011132\|CRISPRCasFinder	798241-798296	56	NZ_CP011132.1	802978-803033	1	0.982
NZ_CP011132_9	9.1\|4894353\|36\|NZ_CP011132\|CRISPRCasFinder	4894353-4894388	36	NZ_CP011132.1	4893609-4893644	1	0.972
NZ_CP011132_2	2.1\|798241\|56\|NZ_CP011132\|CRISPRCasFinder	798241-798296	56	NZ_CP011132.1	803646-803701	2	0.964

1. spacer 2.1|798241|56|NZ_CP011132|CRISPRCasFinder matches to position: 802978-803033, mismatch: 1, identity: 0.982

ctcgtaggtctgataagcgcagcgccatcaggcagtttgccggatgacggcacaag	CRISPR spacer
ctcgtaggcctgataagcgcagcgccatcaggcagtttgccggatgacggcacaag	Protospacer
********.***********************************************

2. spacer 9.1|4894353|36|NZ_CP011132|CRISPRCasFinder matches to position: 4893609-4893644, mismatch: 1, identity: 0.972

ttcgtgcttttcgtaggccggatagggcgttggtcc	CRISPR spacer
ttcgtgcatttcgtaggccggatagggcgttggtcc	Protospacer
******* ****************************

3. spacer 2.1|798241|56|NZ_CP011132|CRISPRCasFinder matches to position: 803646-803701, mismatch: 2, identity: 0.964

ctcgtaggtctgataagcgcagcgccatcaggcagtttgccggatgacggcacaag	CRISPR spacer
ctcgtaggcctgataagcgcagcgccatcaggcagtttgccggacgacggcacaag	Protospacer
********.***********************************.***********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP011132_9	9.1\|4894353\|36\|NZ_CP011132\|CRISPRCasFinder	4894353-4894388	36	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	40322-40357	9	0.75

1. spacer 9.1|4894353|36|NZ_CP011132|CRISPRCasFinder matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 9, identity: 0.75

ttcgtgcttttcgtaggccggatagggcgttggtcc	CRISPR spacer
tgcacgctttttgtaggccggataaggcgtttacgc	Protospacer
* *..******.************.****** .. *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2289010 : 2335066

Salmonella_phage(30.77%)

capsid,terminase,tail,transposase,integrase,head,holin

attL 2331435:2331449|attR 2337542:2337556

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046481417.1\|2289010_2290183_-	serine-type D-Ala-D-Ala carboxypeptidase DacD	B6DZZ7	Stx2-converting_phage	1.2e-199	87.9
WP_044258215.1\|2290626_2290875_+	DinI-like family protein	Q687E4	Enterobacteria_phage	1.7e-28	75.6
WP_046481418.1\|2291663_2291846_-	hypothetical protein	A0A0H4TGH1	Klebsiella_phage	3.8e-09	55.9
WP_046481419.1\|2291874_2292117_-	hypothetical protein	A0A0S2SY98	Pseudomonas_phage	4.4e-21	61.8
WP_052746917.1\|2292109_2292409_-	hypothetical protein	I6PBW9	Pseudomonas_phage	2.2e-06	42.2
WP_046481420.1\|2293362_2294325_-	hypothetical protein	H6WRW5	Salmonella_phage	2.3e-116	65.0
WP_046481421.1\|2294332_2297044_-	DUF1983 domain-containing protein	S4TTF5	Salmonella_phage	0.0e+00	85.4
WP_046481422.1\|2297043_2297442_-	hypothetical protein	S4TR39	Salmonella_phage	2.8e-60	81.1
WP_046481423.1\|2297448_2298033_-	hypothetical protein	S4TND4	Salmonella_phage	3.2e-97	88.7
WP_046481424.1\|2298032_2298626_-	hypothetical protein	S4TSP7	Salmonella_phage	3.1e-108	95.9
WP_046481425.1\|2298792_2299008_+	hypothetical protein	NA	NA	NA	NA
WP_046481426.1\|2298999_2299365_-	hypothetical protein	NA	NA	NA	NA
WP_046481427.1\|2299410_2302740_-\|tail	phage tail tape measure protein	K7P7L6	Enterobacteria_phage	0.0e+00	68.4
WP_046481428.1\|2302798_2303212_-	lipoprotein	G8C7Q7	Escherichia_phage	2.7e-34	48.9
WP_046481429.1\|2303266_2303545_-	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	3.5e-38	88.0
WP_046481430.1\|2303568_2303937_-\|tail	phage tail assembly chaperone	K7PKV6	Enterobacterial_phage	1.5e-49	76.0
WP_046481431.1\|2303947_2304391_-	hypothetical protein	S4TNM8	Salmonella_phage	2.4e-73	94.6
WP_046481432.1\|2304449_2304797_-	DUF3168 domain-containing protein	K7P7Q9	Enterobacteria_phage	9.5e-41	71.7
WP_096147877.1\|2305126_2306246_+\|transposase	IS3-like element ISSen4 family transposase	S5WIU1	Leptospira_phage	1.7e-51	42.8
WP_046481433.1\|2306464_2306815_-\|head	phage head closure protein	S4TND9	Salmonella_phage	7.8e-43	73.3
WP_046481434.1\|2306827_2307154_-\|head,tail	phage gp6-like head-tail connector protein	S4TSQ3	Salmonella_phage	4.0e-49	90.7
WP_167337381.1\|2309548_2309716_-	hypothetical protein	S4TR49	Salmonella_phage	7.0e-18	81.8
WP_046481437.1\|2309754_2311689_-\|capsid	phage major capsid protein	S4TNE3	Salmonella_phage	3.6e-299	83.3
WP_046481438.1\|2311747_2313406_-\|terminase	terminase large subunit	Q3HQS7	Burkholderia_phage	1.4e-235	71.4
WP_046481440.1\|2314234_2314600_-	HNH endonuclease	S4TTG9	Salmonella_phage	1.7e-48	83.3
WP_046481441.1\|2314592_2315186_-	hypothetical protein	S4TR53	Salmonella_phage	4.5e-83	72.4
WP_046481442.1\|2315167_2316625_-	glycosyltransferase family 2 protein	K7PKP3	Enterobacterial_phage	7.3e-276	93.4
WP_046481443.1\|2316636_2317110_-	hypothetical protein	K7PH02	Enterobacteria_phage	3.4e-73	88.4
WP_046481444.1\|2317254_2317464_-	hypothetical protein	Q38201	Enterobacteria_phage	4.0e-26	85.7
WP_046481445.1\|2317468_2317804_-	hypothetical protein	S4TTH3	Salmonella_phage	2.5e-38	67.0
WP_046481446.1\|2317865_2318063_-	hypothetical protein	K7PHC3	Enterobacterial_phage	4.4e-27	93.8
WP_046481447.1\|2318435_2319005_-	antirepressor	A0A088CD55	Shigella_phage	2.0e-80	72.9
WP_080949924.1\|2319397_2319673_-	hypothetical protein	G8C7W1	Escherichia_phage	5.4e-23	68.9
WP_046481448.1\|2319679_2320294_-	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	2.7e-91	80.9
WP_046481449.1\|2320451_2320733_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.0e-33	75.0
WP_046481450.1\|2320719_2321115_-\|holin	phage holin family protein	K7PHB9	Enterobacterial_phage	5.0e-62	96.2
WP_046481451.1\|2321656_2321869_+	KTSC domain-containing protein	NA	NA	NA	NA
WP_046481452.1\|2322472_2323276_-	antitermination protein	F1C595	Cronobacter_phage	9.3e-116	77.5
WP_046481453.1\|2323275_2323641_-	RusA family crossover junction endodeoxyribonuclease	G8C7V6	Escherichia_phage	5.1e-37	61.4
WP_046481454.1\|2323627_2325010_-	replicative DNA helicase	Q8W640	Enterobacteria_phage	1.8e-175	69.6
WP_046481455.1\|2325006_2325888_-	ATP-binding protein	Q8W641	Enterobacteria_phage	7.2e-85	65.7
WP_046481456.1\|2325902_2326814_-	helix-turn-helix domain-containing protein	Q8W642	Enterobacteria_phage	1.5e-98	67.8
WP_032635108.1\|2326810_2327107_-	hypothetical protein	NA	NA	NA	NA
WP_046481457.1\|2327132_2327351_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_046481458.1\|2327464_2328172_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	3.3e-96	74.5
WP_046481459.1\|2328544_2328748_+	hypothetical protein	NA	NA	NA	NA
WP_046481460.1\|2328744_2329164_+	hypothetical protein	A0A1B5FPB2	Escherichia_phage	1.5e-08	54.1
WP_046481461.1\|2329351_2329552_+	hypothetical protein	NA	NA	NA	NA
WP_046481462.1\|2329541_2329898_+	hypothetical protein	A0A1B5FPB3	Escherichia_phage	7.0e-23	49.6
WP_046481463.1\|2329897_2330149_+	hypothetical protein	A0A286SGR4	Klebsiella_phage	2.5e-27	71.4
WP_046481464.1\|2330335_2330770_+	hypothetical protein	A0A286S1S2	Klebsiella_phage	1.5e-51	72.3
WP_046498055.1\|2330810_2331329_+	hypothetical protein	A0A286S1S7	Klebsiella_phage	7.0e-80	82.0
WP_046481465.1\|2331341_2332088_+	ORF6N domain-containing protein	A0A1B5FPC0	Escherichia_phage	3.0e-116	85.0
2331435:2331449	attL	NA	NA	NA	NA
WP_046481466.1\|2332087_2332429_+	hypothetical protein	A0A1B5FPL8	Escherichia_phage	6.2e-45	75.2
WP_046481467.1\|2332429_2332654_+	hypothetical protein	A0A1B5FPG2	Escherichia_phage	2.3e-16	64.4
WP_046481468.1\|2332754_2333216_+	hypothetical protein	A0A1B5FPC7	Escherichia_phage	6.7e-42	51.9
WP_155403991.1\|2333215_2333575_+	hypothetical protein	A0A1L7N114	Ralstonia_phage	7.8e-22	49.1
WP_044257011.1\|2333712_2333904_+	AlpA family phage regulatory protein	A0A0M4RTZ2	Salmonella_phage	2.3e-20	78.7
WP_044257009.1\|2333884_2335066_-\|integrase	site-specific integrase	A0A0M4QX09	Salmonella_phage	3.0e-211	89.8
2337542:2337556	attR	NA	NA	NA	NA

DBSCAN-SWA_2

2410309 : 2420264

Bacillus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046481527.1\|2410309_2411713_+	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	6.6e-32	30.1
WP_046481528.1\|2411709_2412432_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	1.9e-30	33.0
WP_042318041.1\|2412599_2413961_+\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.1e-206	94.8
WP_046481530.1\|2414358_2415258_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	1.0e-14	29.3
WP_080949927.1\|2415706_2417911_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.7e-21	24.3
WP_046481532.1\|2417921_2420264_+	chitinase	Q5ZGC9	Flavobacterium_phage	6.9e-18	37.6

DBSCAN-SWA_3

2453202 : 2461621

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046481571.1\|2453202_2455236_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.8e-54	27.6
WP_046481573.1\|2455435_2455894_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	3.9e-50	67.3
WP_046481574.1\|2455939_2456410_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.3e-61	75.5
WP_046481576.1\|2456456_2457176_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_046481577.1\|2457168_2458857_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.4
WP_046481579.1\|2459079_2459811_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	1.5e-104	92.0
WP_042318015.1\|2459870_2459978_+	protein YohO	NA	NA	NA	NA
WP_046481580.1\|2459958_2460690_-	ABC transporter permease	NA	NA	NA	NA
WP_046481582.1\|2460673_2461621_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	1.3e-07	26.1

DBSCAN-SWA_4

3569346 : 3647528

Staphylococcus_phage(33.33%)

plate,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080949964.1\|3569346_3570318_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_046487193.1\|3570281_3572003_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_046487196.1\|3572021_3572402_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_046487199.1\|3572401_3572887_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_046487201.1\|3572904_3574386_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_046487203.1\|3574403_3574916_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_052746946.1\|3575285_3575756_+	hypothetical protein	NA	NA	NA	NA
WP_046487205.1\|3575757_3577095_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_046487208.1\|3577078_3577825_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_046487213.1\|3577821_3581385_+	hypothetical protein	NA	NA	NA	NA
WP_046487218.1\|3581372_3582293_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_046487223.1\|3582289_3582682_+	DUF4280 domain-containing protein	NA	NA	NA	NA
WP_046487227.1\|3582741_3584091_-	MFS transporter	NA	NA	NA	NA
WP_046487233.1\|3584111_3585029_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA
WP_046487238.1\|3585040_3586237_-	CoA transferase	NA	NA	NA	NA
WP_046487242.1\|3586472_3588398_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_046487244.1\|3588549_3589311_+	IclR family transcriptional regulator	NA	NA	NA	NA
WP_046487247.1\|3589323_3590940_-	glycoside hydrolase family 43 protein	NA	NA	NA	NA
WP_046487250.1\|3590950_3592330_-	MFS transporter	NA	NA	NA	NA
WP_046487254.1\|3592660_3594628_-	YjhG/YagF family D-xylonate dehydratase	NA	NA	NA	NA
WP_046487256.1\|3594887_3595238_-	cupin domain-containing protein	NA	NA	NA	NA
WP_046487259.1\|3595250_3596843_-	autoinducer-2 kinase	NA	NA	NA	NA
WP_046498293.1\|3596951_3597908_-	transcriptional regulator LsrR	NA	NA	NA	NA
WP_046487262.1\|3598157_3599711_+	autoinducer 2 ABC transporter ATP-binding protein LsrA	A0A2H4PQG7	Staphylococcus_phage	1.3e-20	30.0
WP_046487265.1\|3599704_3600754_+	autoinducer 2 ABC transporter permease LsrC	NA	NA	NA	NA
WP_046487268.1\|3600753_3601752_+	autoinducer 2 ABC transporter permease LsrD	NA	NA	NA	NA
WP_000155278.1\|3601780_3602803_+	autoinducer 2 ABC transporter substrate-binding protein LsrB	NA	NA	NA	NA
WP_046487278.1\|3602831_3603707_+	3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	NA	NA	NA	NA
WP_046487280.1\|3603755_3604046_+	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase	NA	NA	NA	NA
WP_046487282.1\|3604057_3604807_+	epimerase	NA	NA	NA	NA
WP_046487283.1\|3605169_3606864_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_052746947.1\|3606876_3617763_+	hemagglutinin repeat-containing protein	A0A0R6PJK4	Moraxella_phage	3.0e-31	40.7
WP_080950078.1\|3618817_3618970_-	type I addiction module toxin, SymE family	NA	NA	NA	NA
WP_052746949.1\|3619107_3620535_+	VENN motif pre-toxin domain-containing protein	NA	NA	NA	NA
WP_080950079.1\|3620693_3621305_+	hypothetical protein	NA	NA	NA	NA
WP_052746950.1\|3621983_3624254_+	hemagglutinin repeat-containing protein	NA	NA	NA	NA
WP_046487290.1\|3624250_3624589_+	hypothetical protein	NA	NA	NA	NA
WP_155404014.1\|3624785_3625130_+	hypothetical protein	NA	NA	NA	NA
WP_155404052.1\|3625126_3625246_+	hypothetical protein	NA	NA	NA	NA
WP_046487295.1\|3625242_3625731_+	hypothetical protein	NA	NA	NA	NA
WP_046487298.1\|3625931_3626186_+	hypothetical protein	NA	NA	NA	NA
WP_046487300.1\|3626877_3627477_+	hypothetical protein	NA	NA	NA	NA
WP_080950080.1\|3627617_3627980_+	hypothetical protein	NA	NA	NA	NA
WP_096147877.1\|3628596_3629717_-\|transposase	IS3-like element ISSen4 family transposase	S5WIU1	Leptospira_phage	1.7e-51	42.8
WP_046487307.1\|3630859_3631453_-	hypothetical protein	NA	NA	NA	NA
WP_046487310.1\|3631999_3633151_+	lactonase family protein	NA	NA	NA	NA
WP_046487311.1\|3633280_3633685_+	DUF4279 domain-containing protein	NA	NA	NA	NA
WP_080721708.1\|3634075_3634678_+	DUF1819 family protein	NA	NA	NA	NA
WP_046487313.1\|3634674_3635277_+	DUF1788 domain-containing protein	NA	NA	NA	NA
WP_046487315.1\|3635288_3638930_+	BREX system P-loop protein BrxC	NA	NA	NA	NA
WP_046487317.1\|3642835_3645433_+	BREX-1 system phosphatase PglZ type A	NA	NA	NA	NA
WP_001193068.1\|3645443_3647528_+\|protease	protease Lon-related BREX system protein BrxL	NA	NA	NA	NA

DBSCAN-SWA_5

4604688 : 4663177

Escherichia_phage(31.71%)

capsid,lysis,terminase,portal,tail,plate,integrase,head,protease

attL 4607434:4607475|attR 4639751:4639792

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046493226.1\|4604688_4606062_-	envelope stress sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	6.5e-16	24.0
WP_001033731.1\|4606058_4606757_-	envelope stress response regulator transcription factor CpxR	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
WP_046498482.1\|4606907_4607408_+	cell-envelope stress modulator CpxP	NA	NA	NA	NA
4607434:4607475	attL	NA	NA	NA	NA
WP_046493307.1\|4607598_4608579_-\|integrase	tyrosine-type recombinase/integrase	Q7Y4C5	Escherichia_virus	8.9e-161	85.0
WP_046493310.1\|4608648_4608942_-	helix-turn-helix transcriptional regulator	Q1JS21	Enterobacteria_phage	4.2e-34	73.2
WP_046493313.1\|4609137_4609410_+	hypothetical protein	Q1JS20	Enterobacteria_phage	2.3e-34	74.4
WP_046493317.1\|4609579_4610080_+	hypothetical protein	M1SV55	Escherichia_phage	5.3e-69	75.3
WP_046493320.1\|4610143_4610476_+	hypothetical protein	NA	NA	NA	NA
WP_046493322.1\|4610503_4610815_+	DUF5405 family protein	A0A0F7LCL4	Escherichia_phage	6.8e-14	43.6
WP_046493325.1\|4610801_4610993_+	hypothetical protein	NA	NA	NA	NA
WP_046493326.1\|4610992_4611268_+	DUF5405 family protein	M1TAP2	Escherichia_phage	1.5e-25	62.6
WP_046493327.1\|4611257_4613552_+	replication endonuclease	Q858T4	Yersinia_virus	0.0e+00	74.5
WP_052746970.1\|4613552_4613858_+	hypothetical protein	NA	NA	NA	NA
WP_046493329.1\|4613858_4614095_+	hypothetical protein	Q6K1F0	Salmonella_virus	6.9e-19	66.7
WP_046493332.1\|4614307_4615423_+	ParB N-terminal domain-containing protein	Q858T2	Yersinia_virus	8.7e-19	25.7
WP_046493333.1\|4615426_4616446_+	hypothetical protein	NA	NA	NA	NA
WP_046493335.1\|4616448_4617456_-	DNA adenine methylase	M1HZJ7	Paramecium_bursaria_Chlorella_virus	1.3e-10	29.0
WP_023223238.1\|4617849_4618887_-\|portal	phage portal protein	Q6K1J0	Salmonella_virus	1.2e-163	79.3
WP_046493337.1\|4618886_4620656_-\|terminase	terminase ATPase subunit family protein	Q9T0R3	Escherichia_phage	2.9e-287	81.3
WP_046493340.1\|4620820_4621684_+\|capsid	GPO family capsid scaffolding protein	A0A218M4L9	Erwinia_phage	3.1e-101	66.6
WP_046493343.1\|4621715_4622876_+\|capsid	phage major capsid protein, P2 family	A0A0M4R4W2	Salmonella_phage	8.2e-129	62.8
WP_046493346.1\|4622879_4623638_+\|terminase	terminase endonuclease subunit	Q94MJ2	Enterobacteria_phage	3.0e-79	66.3
WP_000177982.1\|4623735_4624236_+\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	3.8e-59	68.5
WP_001100637.1\|4624235_4624439_+\|tail	tail protein X	U5N3E7	Enterobacteria_phage	8.9e-23	76.1
WP_000524754.1\|4624429_4624651_+	hypothetical protein	A0A218M4L5	Erwinia_phage	8.7e-24	71.2
WP_046493353.1\|4624634_4625144_+	lysozyme	A0A218M4K3	Erwinia_phage	1.6e-76	83.2
WP_046493356.1\|4625140_4625554_+\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	1.2e-34	59.1
WP_044701608.1\|4625661_4626129_+\|tail	phage tail protein	U5N0S7	Enterobacteria_phage	9.7e-57	70.3
WP_046493363.1\|4626121_4626577_+	phage virion morphogenesis protein	O80313	Escherichia_phage	8.6e-50	68.5
WP_046493365.1\|4626590_4627334_+	hypothetical protein	NA	NA	NA	NA
WP_046493367.1\|4627408_4628050_+\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	1.7e-96	83.6
WP_000213440.1\|4628046_4628394_+	GPW/gp25 family protein	A0A0F7LDQ1	Escherichia_phage	2.8e-40	70.4
WP_046493369.1\|4628398_4629307_+\|plate	baseplate assembly protein	A0A218M4K5	Erwinia_phage	7.8e-135	81.8
WP_046493372.1\|4629299_4629911_+\|tail	phage tail protein I	A0A218M4J3	Erwinia_phage	6.3e-96	83.6
WP_046493375.1\|4629907_4631119_+\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	1.7e-105	74.4
WP_046493377.1\|4631102_4631288_+	hypothetical protein	NA	NA	NA	NA
WP_046493379.1\|4631351_4631783_-\|tail	tail assembly chaperone	A0A0M4S6V4	Salmonella_phage	6.9e-25	56.1
WP_046493384.1\|4632405_4632984_+	recombinase family protein	A0A0F7LA37	Escherichia_phage	1.0e-79	80.2
WP_046493386.1\|4633048_4634236_+\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	1.2e-188	82.3
WP_023223221.1\|4634248_4634767_+\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	2.0e-71	75.6
WP_044701589.1\|4634829_4635111_+\|tail	phage tail assembly protein	A0A0F7LBN9	Escherichia_phage	4.7e-30	79.1
WP_000763326.1\|4635143_4635263_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	3.7e-13	84.6
WP_046493389.1\|4635255_4637685_+\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	1.1e-263	75.9
WP_023252154.1\|4637696_4638161_+\|tail	phage tail protein	A0A0F7LBX3	Escherichia_phage	5.9e-62	75.5
WP_046493395.1\|4638163_4639357_+	phage late control D family protein	Q6K1G4	Salmonella_virus	2.3e-166	78.9
WP_052746971.1\|4639419_4639641_+	DNA-binding transcriptional regulator	S4TNZ3	Salmonella_phage	2.1e-25	72.6
WP_046493396.1\|4639873_4640776_+	CDF family cation-efflux transporter FieF	NA	NA	NA	NA
4639751:4639792	attR	NA	NA	NA	NA
WP_046493399.1\|4640960_4641923_+	6-phosphofructokinase	NA	NA	NA	NA
WP_046493401.1\|4642126_4643116_+	sulfate/thiosulfate ABC transporter substrate-binding protein Sbp	NA	NA	NA	NA
WP_046493404.1\|4643219_4643975_+	CDP-diacylglycerol diphosphatase	NA	NA	NA	NA
WP_046493407.1\|4644240_4645575_+	MFS transporter	NA	NA	NA	NA
WP_046493410.1\|4645585_4646536_+	aminoimidazole riboside kinase	NA	NA	NA	NA
WP_046493412.1\|4646554_4647595_+	ADP-ribosylglycohydrolase family protein	NA	NA	NA	NA
WP_042325679.1\|4647657_4648380_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_046493415.1\|4648465_4649770_+	anion permease	NA	NA	NA	NA
WP_046493416.1\|4649882_4651355_+	DASS family sodium-coupled anion symporter	NA	NA	NA	NA
WP_046493417.1\|4651397_4652165_-	triose-phosphate isomerase	NA	NA	NA	NA
WP_046493418.1\|4652394_4652997_-	YiiQ family protein	NA	NA	NA	NA
WP_046493420.1\|4653097_4653517_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_046493421.1\|4653560_4654307_-	ferredoxin--NADP(+) reductase	NA	NA	NA	NA
WP_046493423.1\|4654403_4655414_-	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_046493424.1\|4655573_4657082_-	glycerol kinase GlpK	NA	NA	NA	NA
WP_046493425.1\|4657104_4657950_-	glycerol uptake facilitator protein GlpF	M1HWZ0	Paramecium_bursaria_Chlorella_virus	2.6e-15	28.0
WP_155404026.1\|4658338_4658584_+	septal ring assembly protein ZapB	NA	NA	NA	NA
WP_046493430.1\|4658796_4659540_-	3-oxoacyl-ACP reductase FabG	NA	NA	NA	NA
WP_042998924.1\|4659731_4660217_-	ribonuclease E activity regulator RraA	NA	NA	NA	NA
WP_046493433.1\|4660309_4661239_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_046493436.1\|4661305_4662637_-	HslU--HslV peptidase ATPase subunit	A0A173GE36	Erwinia_phage	4.9e-45	30.3
WP_046493441.1\|4662646_4663177_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA

DBSCAN-SWA_6

4834119 : 4894306

Pseudomonas_phage(36.36%)

tRNA,capsid,tail,terminase,plate,integrase,transposase,head,protease

attL 4829750:4829767|attR 4893691:4893708

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4829750:4829767	attL	NA	NA	NA	NA
WP_046493906.1\|4834119_4835115_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_046493907.1\|4835248_4835491_+	envelope stress response protein PspG	NA	NA	NA	NA
WP_046493910.1\|4835779_4836763_-	quinone oxidoreductase	NA	NA	NA	NA
WP_046493911.1\|4836827_4838243_+	replicative DNA helicase	O80281	Escherichia_phage	1.2e-198	76.6
WP_046493915.1\|4838392_4839472_+	alanine racemase	A0A0P0YM39	Yellowstone_lake_mimivirus	2.0e-28	28.2
WP_046493918.1\|4839665_4840859_+	aromatic amino acid transaminase	NA	NA	NA	NA
WP_046493920.1\|4841092_4841806_+	acid phosphatase AphA	NA	NA	NA	NA
WP_046493923.1\|4842054_4842405_+	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA
WP_046493924.1\|4842445_4845268_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	1.0e-311	55.4
WP_046493925.1\|4845520_4846048_+	single-stranded DNA-binding protein SSB1	A0A0A0P1Q9	Enterobacteria_phage	6.0e-55	95.5
WP_003030312.1\|4846305_4846866_-	recombinase family protein	K7PJT4	Enterobacteria_phage	5.2e-73	72.4
WP_003030314.1\|4847071_4847494_+	hypothetical protein	NA	NA	NA	NA
WP_046493926.1\|4847886_4848318_+\|tail	tail fiber assembly protein	S5FXM8	Shigella_phage	1.1e-17	41.6
WP_046493927.1\|4848289_4848883_-\|tail	tail fiber assembly protein	K7PMC4	Enterobacterial_phage	1.0e-55	56.1
WP_080950100.1\|4848882_4849689_-	hypothetical protein	K7PH60	Enterobacterial_phage	9.6e-36	50.3
WP_046493928.1\|4849769_4850342_-	DUF2313 domain-containing protein	F6MIL7	Haemophilus_phage	1.7e-34	44.9
WP_046493929.1\|4850338_4851406_-\|plate	baseplate J/gp47 family protein	A0A0M3LQN4	Mannheimia_phage	1.1e-66	43.9
WP_046493930.1\|4851405_4851756_-	phage GP46 family protein	A0A2H4JDR8	uncultured_Caudovirales_phage	3.6e-32	61.7
WP_046493931.1\|4851847_4852435_-\|plate	phage baseplate assembly protein	A0A0M3LPA3	Mannheimia_phage	5.9e-35	47.5
WP_046493932.1\|4852418_4853645_-\|tail	tail protein	A0A2H4J9E6	uncultured_Caudovirales_phage	2.9e-76	37.8
WP_046493933.1\|4853628_4854960_-	DNA circularization N-terminal domain-containing protein	A0A2H4JGT4	uncultured_Caudovirales_phage	9.6e-41	28.8
WP_046493934.1\|4854956_4857167_-\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_046493935.1\|4857301_4857694_-	hypothetical protein	NA	NA	NA	NA
WP_046493936.1\|4857694_4858069_-	hypothetical protein	F6MIK8	Haemophilus_phage	2.5e-31	55.7
WP_046493937.1\|4858082_4859501_-\|tail	phage tail sheath subtilisin-like domain-containing protein	B7SDP8	Haemophilus_phage	1.0e-96	45.8
WP_046493938.1\|4859487_4859706_-	DUF2635 domain-containing protein	A0A2H4JED6	uncultured_Caudovirales_phage	1.1e-05	46.6
WP_046493939.1\|4859692_4860352_-	DUF1834 family protein	A0A0M3LQJ7	Mannheimia_phage	6.4e-22	35.8
WP_046493940.1\|4860351_4860780_-	DUF1320 family protein	A0A1B0T6F3	Thiobacimonas_phage	1.5e-11	34.3
WP_046493941.1\|4860783_4861239_-	hypothetical protein	NA	NA	NA	NA
WP_046493942.1\|4861238_4862147_-\|head	Mu-like prophage major head subunit gpT family protein	A0A2H4J778	uncultured_Caudovirales_phage	5.8e-106	63.2
WP_046493943.1\|4862158_4862551_-	hypothetical protein	J9RWG0	Pseudomonas_phage	6.5e-22	45.0
WP_046493944.1\|4862562_4863660_-\|protease	phage protease	A0A2D1GNS3	Pseudomonas_phage	1.3e-59	40.6
WP_046493945.1\|4863882_4864425_-	phage virion morphogenesis protein	J9SNH3	Pseudomonas_phage	5.3e-22	40.9
WP_046493946.1\|4864421_4865681_-\|capsid	minor capsid protein	H6V8N8	Pseudomonas_phage	6.5e-55	36.9
WP_046493947.1\|4865667_4867245_-	DUF935 domain-containing protein	A0A0M5MS00	Ralstonia_phage	5.7e-125	46.9
WP_046493948.1\|4867248_4868904_-\|terminase	phage terminase large subunit	H6V8N6	Pseudomonas_phage	2.0e-205	64.9
WP_046493949.1\|4868908_4869268_-	hypothetical protein	NA	NA	NA	NA
WP_046493950.1\|4869264_4869498_-	hypothetical protein	NA	NA	NA	NA
WP_046493951.1\|4869490_4869991_-	DUF1804 family protein	L7P7L4	Pseudomonas_phage	4.0e-48	54.6
WP_046493952.1\|4869992_4870277_-	hypothetical protein	NA	NA	NA	NA
WP_046493953.1\|4870273_4870516_-	hypothetical protein	NA	NA	NA	NA
WP_046493954.1\|4870524_4871157_-	hypothetical protein	A0A2D1GNR2	Pseudomonas_phage	6.0e-17	33.0
WP_080950011.1\|4871128_4871380_-	hypothetical protein	A0A2D1GNW8	Pseudomonas_phage	4.2e-14	55.0
WP_046493955.1\|4871376_4872021_-	glycoside hydrolase family 19 protein	A0A2D1GNI0	Pseudomonas_phage	5.6e-63	62.9
WP_046493956.1\|4872099_4872600_-	hypothetical protein	NA	NA	NA	NA
WP_046493957.1\|4872612_4873047_-	hypothetical protein	A0A2D1GNW5	Pseudomonas_phage	1.2e-27	45.2
WP_046493958.1\|4872991_4873468_-	regulatory protein GemA	A0A2D1GNN4	Pseudomonas_phage	2.8e-43	66.7
WP_052746975.1\|4873702_4873921_-	hypothetical protein	NA	NA	NA	NA
WP_046493959.1\|4873917_4874133_-	hypothetical protein	NA	NA	NA	NA
WP_046493960.1\|4874125_4874491_-	DUF4406 domain-containing protein	A0A222YYT7	Escherichia_phage	3.9e-21	48.5
WP_052746976.1\|4874487_4874991_-	hypothetical protein	K7PHA5	Enterobacterial_phage	1.1e-24	50.9
WP_046493961.1\|4874987_4875710_-	DUF2786 domain-containing protein	A0A0S4L2R2	Pseudomonas_phage	5.2e-17	31.9
WP_155404029.1\|4875714_4876164_-	hypothetical protein	NA	NA	NA	NA
WP_046493962.1\|4876241_4876433_-	hypothetical protein	A0A2D1GNV5	Pseudomonas_phage	1.1e-14	66.7
WP_046493963.1\|4876413_4876656_-	ANR family transcriptional regulator	NA	NA	NA	NA
WP_046493964.1\|4876657_4877302_-	DUF3164 family protein	A4JWM8	Burkholderia_virus	4.8e-70	61.2
WP_046493965.1\|4877291_4877489_-	hypothetical protein	NA	NA	NA	NA
WP_052746978.1\|4877490_4877712_-	hypothetical protein	A0A0S3UG15	Pseudomonas_phage	8.2e-06	34.3
WP_046493966.1\|4877722_4878013_-	hypothetical protein	NA	NA	NA	NA
WP_046493967.1\|4878023_4878917_-	AAA family ATPase	A0A2D1GNS0	Pseudomonas_phage	1.2e-98	59.1
WP_046493968.1\|4878924_4880979_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2D1GNK9	Pseudomonas_phage	1.7e-169	47.8
WP_046493969.1\|4881001_4881271_-	helix-turn-helix domain-containing protein	A0A2P9JZG5	Alteromonadaceae_phage	2.2e-21	57.7
WP_052747015.1\|4881441_4882182_+	helix-turn-helix transcriptional regulator	A5X9F5	Aeromonas_virus	3.6e-29	38.3
WP_046493970.1\|4882543_4885252_-	cation-transporting P-type ATPase	M1I547	Acanthocystis_turfacea_Chlorella_virus	1.1e-67	26.7
WP_042999048.1\|4885808_4886090_-	YjcB family protein	NA	NA	NA	NA
WP_046493971.1\|4886685_4888272_+	EAL domain-containing protein	NA	NA	NA	NA
WP_046493972.1\|4888274_4888598_-	superoxide response transcriptional regulator SoxS	NA	NA	NA	NA
WP_046493973.1\|4888683_4889148_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA
WP_046493974.1\|4889402_4890071_+	glutathione S-transferase	NA	NA	NA	NA
WP_046493975.1\|4890419_4891769_+	guanine/hypoxanthine transporter GhxP	A0A0R6PHV4	Moraxella_phage	3.6e-160	72.0
WP_046493976.1\|4891917_4893564_+	Na+/H+ antiporter	NA	NA	NA	NA
WP_046493977.1\|4893814_4894306_+\|transposase	transposase	NA	NA	NA	NA
4893691:4893708	attR	NA	NA	NA	NA

DBSCAN-SWA_7

4956727 : 4962996

Escherichia_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001310555.1\|4956727_4957744_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	9.8e-187	99.7
WP_046494054.1\|4957947_4960380_+	molybdopterin-dependent oxidoreductase	A0A077SK27	Escherichia_phage	0.0e+00	83.2
WP_046494056.1\|4960393_4961020_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	2.9e-120	92.3
WP_046494058.1\|4961012_4961786_+	dimethyl sulfoxide reductase anchor subunit	A0A077SK59	Escherichia_phage	7.9e-104	79.8
WP_046494060.1\|4961869_4962466_+	molecular chaperone	A0A077SLS7	Escherichia_phage	1.2e-78	69.7
WP_046494062.1\|4962462_4962996_+	ferredoxin-type protein NapF	A0A077SLP0	Escherichia_phage	1.1e-48	57.4

DBSCAN-SWA_8

5077387 : 5085749

uncultured_Caudovirales_phage(83.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042999128.1\|5077387_5077903_+	N-acetyltransferase	A0A2H4J136	uncultured_Caudovirales_phage	2.4e-16	34.8
WP_042999129.1\|5078182_5079406_+	MFS transporter	NA	NA	NA	NA
WP_000968905.1\|5079434_5079932_-	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	2.4e-21	38.3
WP_042999130.1\|5080006_5080435_-	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.3e-52	72.9
WP_042999131.1\|5080447_5081737_-	arsenite efflux transporter membrane subunit ArsB	A0A2H4J144	uncultured_Caudovirales_phage	2.3e-172	73.5
WP_046494309.1\|5081784_5083536_-	arsenite efflux transporter ATPase subunit ArsA	NA	NA	NA	NA
WP_046494310.1\|5083553_5083916_-	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_072134376.1\|5083962_5084316_-	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	6.9e-23	47.2
WP_100245182.1\|5084628_5085749_-\|transposase	IS3-like element ISKpn34 family transposase	S5WIU1	Leptospira_phage	7.3e-50	42.9

DBSCAN-SWA_9

5283258 : 5333830

uncultured_Caudovirales_phage(18.75%)

tRNA,capsid,tail,transposase,integrase,head

attL 5292425:5292471|attR 5334765:5334811

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046495716.1\|5283258_5283591_+\|tRNA	tRNA-binding protein	NA	NA	NA	NA
WP_167337382.1\|5283668_5285048_-	putrescine aminotransferase	A0A1V0SKB7	Klosneuvirus	1.1e-31	28.0
WP_046495720.1\|5285478_5286999_+	PAS domain-containing protein	A0A1B0V854	Salmonella_phage	6.4e-33	36.1
WP_046495725.1\|5287309_5288875_+	MCP four helix bundle domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.7e-12	31.9
WP_162200270.1\|5288871_5289432_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_155404060.1\|5289659_5290424_+	siderophore-interacting protein	NA	NA	NA	NA
WP_080950026.1\|5290509_5290833_+	DUF1889 family protein	NA	NA	NA	NA
WP_046498607.1\|5291485_5292022_+	fimbrial protein	NA	NA	NA	NA
5292425:5292471	attL	NA	NA	NA	NA
WP_046495753.1\|5292668_5293985_+\|integrase	site-specific integrase	A0A248SL35	Klebsiella_phage	1.0e-34	30.0
WP_046498612.1\|5293989_5294604_+	Fic family protein	NA	NA	NA	NA
WP_100247371.1\|5294600_5294756_-	hypothetical protein	NA	NA	NA	NA
WP_046495757.1\|5294884_5295325_+	hypothetical protein	NA	NA	NA	NA
WP_080950027.1\|5295659_5295890_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_046495760.1\|5296023_5297436_+	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_046498619.1\|5297756_5298383_+	inovirus Gp2 family protein	NA	NA	NA	NA
WP_080950104.1\|5298473_5299661_-	hypothetical protein	NA	NA	NA	NA
WP_162200225.1\|5300653_5300824_+	hypothetical protein	NA	NA	NA	NA
WP_046495765.1\|5301030_5301801_+	siderophore-interacting protein	NA	NA	NA	NA
WP_007372177.1\|5301904_5303554_-	glycerone kinase	NA	NA	NA	NA
WP_023336797.1\|5303628_5305047_-	dihydroxyacetone kinase subunit DhaM	NA	NA	NA	NA
WP_007372179.1\|5305057_5305690_-	dihydroxyacetone kinase ADP-binding subunit DhaL	NA	NA	NA	NA
WP_020077889.1\|5305700_5306771_-	dihydroxyacetone kinase subunit DhaK	NA	NA	NA	NA
WP_001310555.1\|5307602_5308619_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	9.8e-187	99.7
WP_046495790.1\|5309506_5310916_-	DUF2130 domain-containing protein	NA	NA	NA	NA
WP_046495793.1\|5310918_5312799_-	ATP-dependent endonuclease	E5E3R2	Burkholderia_phage	6.3e-248	71.7
WP_046495798.1\|5313518_5316797_-	DEAD/DEAH box helicase family protein	A0A2K5B2B9	Erysipelothrix_phage	3.8e-232	42.3
WP_046495804.1\|5317145_5318009_+	GTPase family protein	NA	NA	NA	NA
WP_046495809.1\|5318106_5318940_+	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	3.3e-47	39.1
WP_046495813.1\|5319141_5319846_+	WYL domain-containing protein	NA	NA	NA	NA
WP_046495819.1\|5319842_5320457_+	hypothetical protein	NA	NA	NA	NA
WP_046495825.1\|5320545_5320956_+	hypothetical protein	A0A1B2IBY1	Erwinia_phage	5.8e-29	47.8
WP_046495830.1\|5321033_5321270_+	DUF905 domain-containing protein	NA	NA	NA	NA
WP_046495834.1\|5321348_5321807_+	antirestriction protein	A9J566	Pseudomonas_phage	4.8e-16	34.6
WP_046495838.1\|5321822_5322299_+	RadC family protein	NA	NA	NA	NA
WP_000691995.1\|5322307_5322529_+	DUF987 domain-containing protein	NA	NA	NA	NA
WP_046495841.1\|5322547_5322865_+	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
WP_048215514.1\|5322885_5323227_+	toxin	NA	NA	NA	NA
WP_046495848.1\|5323342_5324176_+	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_046495851.1\|5324497_5325934_+\|integrase	integrase family protein	K7PHM9	Enterobacterial_phage	5.0e-11	25.7
WP_046495854.1\|5325923_5326607_+	hypothetical protein	NA	NA	NA	NA
WP_046495857.1\|5326747_5326954_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_080950105.1\|5327435_5327627_-	toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_046495862.1\|5327760_5328012_+	host cell division inhibitor Icd-like protein	A0A2H4JGW3	uncultured_Caudovirales_phage	7.4e-19	58.4
WP_046495865.1\|5328004_5328196_+	hypothetical protein	NA	NA	NA	NA
WP_046275065.1\|5328188_5328497_+	hypothetical protein	NA	NA	NA	NA
WP_046275066.1\|5328493_5328862_+	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	2.9e-56	89.3
WP_046275067.1\|5328858_5330658_+	DNA primase	Q7M2A8	Enterobacteria_phage	4.6e-131	48.8
WP_046275068.1\|5331198_5332239_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.3e-64	41.1
WP_046275069.1\|5332248_5332590_+\|head	head decoration protein	NA	NA	NA	NA
WP_046495875.1\|5332600_5332984_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_052746986.1\|5333254_5333830_+\|tail	tail assembly protein	K7P6V1	Enterobacteria_phage	2.0e-72	73.8
5334765:5334811	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP011132.1|WP_003030314.1|4847071_4847494_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP011132.1|WP_003030314.1|4847071_4847494_+|hypothetical-protein

4847071_4847494_+

140 aa aa

4834119-4894306

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP011132_9	Orphan	9.1\|4894353\|36\|NZ_CP011132\|CRISPRCasFinder	4894353-4894388	36	4893609-4893644	1

1. spacer 9.1|4894353|36|NZ_CP011132|CRISPRCasFinder matches to NZ_CP011132 position: 4893609-4893644, mismatch: 1

ttcgtgcttttcgtaggccggatagggcgttggtcc	CRISPR spacer
ttcgtgcatttcgtaggccggatagggcgttggtcc	Protospacer
******* ****************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011133

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP011132

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information