CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP005969	Pseudomonas syringae pv. syringae B301D chromosome, complete genome	9 crisprs	DEDDh,csa3,cas3,DinG	1	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP005969_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP005969_1

438076-438221

Orphan

Consensus_repeat	Method
TGTGTACAACGCCAAGCGCTTCAGCGTGGGGGCGCATGTCGTCATCAAATACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP005969_1

>merge|NZ_CP005969|1|438076-438221|CRISPRCasFinder
TGTGTACAACGCCAAGCGCTTCAGCGTGGGGGCGCATGTCGTCATCAAATACGGCGGCGTGCCGTCCCCGCAGCACATCGCTCCCACAAAATTTGTGTACAACGCCAAGCGCTTCAGCGTGGGGGCGCATGTCGTCATCAAATACG

>NZ_CP005969|1|1|438076-438221|CRISPRCasFinder
TGTGTACAACGCCAAGCGCTTCAGCGTGGGGGCGCATGTCGTCATCAAATACG	GCGGCGTGCCGTCCCCGCAGCACATCGCTCCCACAAAATT
TGTGTACAACGCCAAGCGCTTCAGCGTGGGGGCGCATGTCGTCATCAAATACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP005969.1\|WP_003414200.1\|447525_448479_+\|serine-acetyltransferase	unknown	unknown	gnl\|CDD\|200082
NZ_CP005969.1\|WP_003397550.1\|425521_425755_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005969.1\|WP_046722329.1\|440893_442081_-\|SfnB-family-sulfur-acquisition-oxidoreductase	unknown	unknown	gnl\|CDD\|274924
NZ_CP005969.1\|WP_003403129.1\|444647_445316_-\|cystine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|185055
NZ_CP005969.1\|WP_003403157.1\|436851_437640_-\|methionine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
NZ_CP005969.1\|WP_032655466.1\|435724_436855_-\|methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236863
NZ_CP005969.1\|WP_024640803.1\|448491_449199_-\|anti-sigma-factor	unknown	unknown	gnl\|CDD\|227648
NZ_CP005969.1\|WP_024639255.1\|433772_434270_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005969.1\|WP_024639247.1\|443900_444644_-\|L-cystine-ABC-transporter-ATP-binding-protein-YecC	unknown	unknown	gnl\|CDD\|183063
NZ_CP005969.1\|WP_032655488.1\|438304_439663_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274819
NZ_CP005969.1\|WP_032655491.1\|439662_440868_-\|SfnB-family-sulfur-acquisition-oxidoreductase	unknown	unknown	gnl\|CDD\|274924
NZ_CP005969.1\|WP_003403135.1\|442603_443323_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005969.1\|WP_080277987.1\|425844_426840_+\|RHS-repeat-associated-core-domain-containing-protein	unknown	unknown	gnl\|CDD\|274730
NZ_CP005969.1\|WP_032655496.1\|446329_447328_-\|D-cysteine-desulfhydrase	unknown	unknown	gnl\|CDD\|179673
NZ_CP005969.1\|WP_024641562.1\|430618_433720_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP005969.1\|WP_003403166.1\|435090_435735_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NZ_CP005969.1\|WP_011266337.1\|428421_429540_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP005969.1\|WP_024661045.1\|434407_435034_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379312
NZ_CP005969.1\|WP_024640802.1\|445312_446110_-\|cystine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|183061
NZ_CP005969.1\|WP_024641563.1\|429536_430622_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776

Protein	Function_ID	Function_description	E-value
NZ_CP005969.1\|WP_003414200.1\|447525_448479_+\|serine-acetyltransferase	gnl\|CDD\|200082	TIGR01172, Serine_acetyltransferase, serine O-acetyltransferase. Cysteine biosynthesis [Amino acid biosynthesis, Serine family].	2.7677e-57
NZ_CP005969.1\|WP_003403129.1\|444647_445316_-\|cystine-ABC-transporter-permease	gnl\|CDD\|185055	PRK15100, PRK15100, cystine ABC transporter permease.	6.54199e-147
NZ_CP005969.1\|WP_003403157.1\|436851_437640_-\|methionine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	1.51636e-86
NZ_CP005969.1\|WP_032655466.1\|435724_436855_-\|methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|236863	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional.	1.90157e-158
NZ_CP005969.1\|WP_024640803.1\|448491_449199_-\|anti-sigma-factor	gnl\|CDD\|227648	COG5343, COG5343, Uncharacterized protein conserved in bacteria [Function unknown].	2.37635e-36
NZ_CP005969.1\|WP_046722329.1\|440893_442081_-\|SfnB-family-sulfur-acquisition-oxidoreductase	gnl\|CDD\|274924	TIGR04022, Acyl-CoA_dehydrogenase_type_2_domain, sulfur acquisition oxidoreductase, SfnB family. Members of this protein family belong to the greater family of acyl-CoA dehydrogenases. This family includes the sulfate starvation induced protein SfnB of Pseudomonas putida strain DS1, which is both encoded nearby to and phylogenetically closely correlated with the dimethyl sulphone monooxygenase SfnG. This family shows considerable sequence similarity to the Rhodococcus dibenzothiophene desulfurization enzyme DszC, although that enzyme falls outside of the scope of this family. [Central intermediary metabolism, Sulfur metabolism].	0
NZ_CP005969.1\|WP_024639247.1\|443900_444644_-\|L-cystine-ABC-transporter-ATP-binding-protein-YecC	gnl\|CDD\|183063	PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional.	6.80551e-173
NZ_CP005969.1\|WP_032655488.1\|438304_439663_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274819	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP005969.1\|WP_032655491.1\|439662_440868_-\|SfnB-family-sulfur-acquisition-oxidoreductase	gnl\|CDD\|274924	TIGR04022, Acyl-CoA_dehydrogenase_type_2_domain, sulfur acquisition oxidoreductase, SfnB family. Members of this protein family belong to the greater family of acyl-CoA dehydrogenases. This family includes the sulfate starvation induced protein SfnB of Pseudomonas putida strain DS1, which is both encoded nearby to and phylogenetically closely correlated with the dimethyl sulphone monooxygenase SfnG. This family shows considerable sequence similarity to the Rhodococcus dibenzothiophene desulfurization enzyme DszC, although that enzyme falls outside of the scope of this family. [Central intermediary metabolism, Sulfur metabolism].	0
NZ_CP005969.1\|WP_032655496.1\|446329_447328_-\|D-cysteine-desulfhydrase	gnl\|CDD\|179673	PRK03910, PRK03910, D-cysteine desulfhydrase; Validated.	0
NZ_CP005969.1\|WP_080277987.1\|425844_426840_+\|RHS-repeat-associated-core-domain-containing-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	1.98633e-27
NZ_CP005969.1\|WP_024661045.1\|434407_435034_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.88769e-20
NZ_CP005969.1\|WP_003403166.1\|435090_435735_-\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	4.50152e-100
NZ_CP005969.1\|WP_011266337.1\|428421_429540_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	4.07086e-60
NZ_CP005969.1\|WP_024641562.1\|430618_433720_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP005969.1\|WP_024640802.1\|445312_446110_-\|cystine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|183061	PRK11260, PRK11260, cystine ABC transporter substrate-binding protein.	2.98533e-176
NZ_CP005969.1\|WP_024641563.1\|429536_430622_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	9.39272e-69

>NZ_CP005969.1|WP_003403157.1|436851_437640_-|methionine-ABC-transporter-substrate-binding-protein
MSKTLAALALGLLTLTAYADDKPLKVGTTAAFAIPLEAAVEEAARQGLKVELVEFTDWIAPNVSLAAGDIDVNYFQHIPFLTNANEAAGFGLVPYAPGIINNVGLYSKKYKRFDELPTGATVAIANDPINSGRGLQLLAKAGLITLKEGVGYKATEEDITANPKKLKLIQVEAVQLVRAYDDADLVQGYPAYIRLAKTFPADSAILFDGLDHPEYVIQFVIKPDHKDDPRLAKFVDIYQHSPVVRASLDKVNGKLYQAGWKE
>NZ_CP005969.1|WP_032655466.1|435724_436855_-|methionine-ABC-transporter-ATP-binding-protein
MTATAQRQRPLDTTGAGQRAQQAELHPELNRAHVRFINLGKTYHGKQGPVEALGNIDLAVQHGEIFGIIGRSGAGKSSLIRTINRLEQPSNGRVLIDQVDIGEFNEDKLVELRRRIGMIFQHFNLMSAKTVWQNVELPLKVAGVPREQRARKVAQLLELVGLQDKHKAYPAQLSGGQKQRVGIARALVHDPAILLCDEATSALDPETTQSILGLLREINQRLGLTIVLITHEMAVIRDICHRVVVLEQGRIVEQGPVWQVFGDPQHDVSKTLLAPLQTGLPKEWAERLSDQPQRPDAALLLDVHFTGVSAEGPDLAALFTALGGKVELLQGGVERIQERAIGHLILSVAGSPHSRDELLARARTLAPRAEVLGYVG
>NZ_CP005969.1|WP_003403166.1|435090_435735_-|ABC-transporter-permease
MWVDRLLQGTLDTFLMVGVSSLIALLLGIPLAVILVTSSKGGIYAAPGINRVLGGFVNLFRSIPFLILMVALIPFTRMIVGTTYGVWAAVVPLTIAATPFFARIAEVSLREVDHGLVEAAQAMGCRRWHIIWHVLLPEARPGIVGGFTITLVTMINSSAMAGAIGAGGLGDIAYRYGYQRFDTQVMLTVIVLLVAVVALVQLGGDRLARSFDRR
>NZ_CP005969.1|WP_024661045.1|434407_435034_-|methyltransferase-domain-containing-protein
MKLDPQTLAQITAATLGNYNSVADDFRAGTRDHDVSQNIDALLRHIEGPTPWQILDFGCGPGRDLKAFTAMGHVAVGLDGSERFAEMARAETGCEVLQQNFLELDLPQGRFDGLFANAVLFHIPKQELPRVLRQLHATLKPGGVLFSSNPRGENQEGWNGERYGAYHDLESWRKLLTEAGFVELEHYYRPAGLPREQQPWLASVWRRQ
>NZ_CP005969.1|WP_024639255.1|433772_434270_-|hypothetical-protein
MANEYVQNGDFSDGLAHWATPEDFEPDFKPMGEGAGQSIKLNIGVAISQSIVDLRAKTLHIEFDVMSADLRLDEVLFVIAVGGYNQEGAMNLSPVIGLATQQWEHISGDIKFGELLDDFFLNISAPSEAFILAFSNSRLASPYGPVRFANLSLSTIDAEDADGND
>NZ_CP005969.1|WP_024641562.1|430618_433720_+|efflux-RND-transporter-permease-subunit
MKGNFNLSEWAIKHQSFVWYLMFVALLMGVFSYMKLGREEDPSFTIKTMIIQTRWPGATVDETLEQVTDRIEKKLEELDSLDYVKSYTRPGESTVFVYLRDTTSAKAIPEIWYQVRKKVDDIRGQFPQGLQGPSFNDEFGDVYGSIYAFTADGFSMRQLRDYVEKVRADIRDVPGLGKVEMIGQQDEVVYLNFSTRKLAALGIDQSQVVQSLQSQNAVTPAGVIEAGPERISVRTSGQFASEKDLAAVNLRINDRFYRLSDIADITRGYTDPPKPLFRFDGKPAIGLAIAMQKGGNIQSFGKALHERMDATTAELPVGIGVHKVSDQAEVVNKAVGGFTSALFEAVIIVLLVSFVSLGFRAGLVVACSIPLVLAMVFVFMEYSGITMQRISLGALIIALGLLVDDAMITVEMMVTRLEMGESKEQAATYAYTSTAFPMLTGTLVTVAGFVPIGLNNSSAGEYTFTLFAVIAVAMLVSWVVAVLFAPVIGVHILSANIKPKSEEPGRIGRAFNGSMLWAMRHRWLAIAITVGLFAASLFSMQFVQNQFFPSSDRPEILVDLNLPQNASINETRKLVDRFEASLKDDPDIERWSTYIGQGALRFYLPLDQQLENPFYAQLVIVSKGLEERGALTARLQKRLRDDFVGIGSYVQALEMGPPVGRPLQYRVSGENIDKVRQHAIELATLLDHNPHVGEVIYDWNEPGKVLRIDINQDKARQLGLSSEDVAKLMNSVVSGSTVTQVRDDIYLINVVGRAEDAERGTPETLQNLQIVTPTGTSIPLLAFATVGYELEQPLVWRRDRKPTITVKGAVRDAIQPTDLVKQLQPEIDKFAAGLPVGYKVATGGTVEESSKAQGPIASVAPLMLFLMATFLMIQLHSIQKMFLVASVAPLGLIGVVLALIPTGTPLGFVAILGVLALIGIIIRNSVILVTQIDAYEKSGYLPWDAVVEATEHRRRPILLTAAAASLGMIPIAREVFWGPMAYAMIGGIIIATLLTLLFLPALYVAWYRIKEPTDEQRREAADKDEGEHAQPAH
>NZ_CP005969.1|WP_024641563.1|429536_430622_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MKRRSCLLLGSLLLSGVLLSGCGKDEAPPEPVRPVVFVEVRPESNQDFGRFAGNIQARYQSVLGFRVAGRIARRDVDVGAEVKKGDLLATLDPTDQQNTVRARQGDLANVQAQLINAQANARRQQELFDRGVGAQAQLDIALTDLKTASSSQEQAKAAAQQARDQLSYSELRSDHDAVVTEWKVEAGQVVTAGQEVVTLARPDIKEAVIDLPDTLADQLPSDVVFTVASQLNPEVNTTATIREIEPQADRTTRTRRARLSLAQTPAAFRLGTAISVTLSSTITPRMRLPINSLQEVDGKRQVWIVDSQSQTVNPRAVTIASRDSDSFVLTDGVKAGEKVVSAGVNSLKPGQKVKVDEESPR
>NZ_CP005969.1|WP_011266337.1|428421_429540_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MPVRISRLVTFGLAAALAALAGCGEEKPAAPELPRVYVQTVKSADFAASVALTGDVQARVQTRLSFRVNGKIIQRNVDVGDRVTARQVLARLDPKDLQTNVDSAAAAVAAEQARVSQSRAAFVRQQKLLPKGYTSRSEYDSAQAAVRGSESSLKAAQAQLANAREQLGYTALVADAPGVITARQAEVGQVVQATMPIFDLARDGDRDAVFNVYESLFVQPPTNQAVQVTLLDNPNIKVSGKVREVTPAVSAQTGTLQIKIALDPLPEGMDLGSVVSVALSAPANASVELPWAALTKDLGEQLGKPAVWVVDEQGKVNLRKVTVTRYLTSKVIIGDGLKSGEKVVVAGGQLLHPDMQVDIAEQPKPQNAQVQP
>NZ_CP005969.1|WP_080277987.1|425844_426840_+|RHS-repeat-associated-core-domain-containing-protein
MRQQTTPCRYRYDALDRLATRTPVGGSIARSFYQSDTLASEIQGAEHLRFLHHDRQLLATQSALATLLIGSDQQHSVLHTVSAGLPAAIAYTPYGHRQALNPLPGFNGERPDPLTGHYLLGNGYRAYNPVLMRFNSPDSLSPFGNGGVNAYGYCAGDPVNRSDPTGHGLIDDVQTYIYLGTALVTGVFGLLTARSSIKAVIKGVKLDPEANAVDNVLSQTSALRRPATTKEKVSAAIGVGALIASATWTASYIAGKFERDSLAARTLRSVAIVVVVPVLGFRGWTYYRSRLPARSAKKASMSKRSSTGSDRIRSSRSSIRSDDPEIEITPL
>NZ_CP005969.1|WP_003397550.1|425521_425755_+|hypothetical-protein
MINSTPSPPLPNSLEDSLMQVSDILRCASATAYETGDNLDGLKRDLAFSVVHLINMAKAELERSLECVQNPDSPDET
>NZ_CP005969.1|WP_032655488.1|438304_439663_-|LLM-class-flavin-dependent-oxidoreductase
MARKKILLNAFNMNCIGHINHGLWTHPRDTSTQFNSLEYWTELAKLLERGLFDGLFIADIVGVYDVYQNSVDVTLKEAIQLPVNDPLLLVSAMAGVTRHLGFGLTANLTYDAPYLFARRMSTLDHLSRGRVGWNIVTGYLDSAARAMGLSEQNEHDRRYDQADEYLEVLYKLWEGSWEDDAVINDREQRVYAQPGKVHKVRHQGEFYQVEGYHLCEPSPQRTPVLFQAGSSERGLQFAGQNAECVFISGQNKAATREQVDKVRASAVQAGRNPEDIKVFMGLNVIVAATEALAREKHAEYRRHASAEAGVAHFAASTGIDFSQYELDEPIQYVKNNAIQSATKNLKNNDWTRQKLLDQHALGGRYITLIGSPKQVADELESWIEETGLDGFNLTRIVTPESYEDFIDLVIPELQRRGSYKTAYQEGSLRKKLFPQGTDRLPQRHAGAAHRHI
>NZ_CP005969.1|WP_032655491.1|439662_440868_-|SfnB-family-sulfur-acquisition-oxidoreductase
MSSNPKARDNAALITSDAQALHIARELALQLKTDSAQRDRERRLPHAELDLFSQSGLWGISVPQAFGGAGVSNVTLAKVIQLISEADGSLGQIPQNHFYALEVLRVNGSPQQQARLYAEALAGVRFGNALAELGTRTAHDRTTRLSRDGDGYRINGRKFYATGALYAHRIPTSVIDDEGVQQLVFVPHDSEGLSVIDDWSGFGQRTTGSGSVVFDNVYVSANDVVPFQSAFQRPTTVGPLAQILHAAIDTGIARAAFEDALTFVQTRTRPWIDSGIEKAVDDPLALHSFGKLGIRLHAAEALLERAGEFLDVAQADSNAETVAAASIAVAEARAISTEISLAAGSTLFELAGSQSTLAEHGLDRHWRNARVHTLHDPVRWKFHAIGNYYLNETNPPLRGTI
>NZ_CP005969.1|WP_046722329.1|440893_442081_-|SfnB-family-sulfur-acquisition-oxidoreductase
MLKASVLQNDAQAIAAAHELAAAAQANAANRDRQRALPWAEIEQFTRSGLGSISIPRAYGGPQVSFVTVAEVFRIISAADPALGQIPQNQFGILHLLQSSATEQQKKALFQSVLDGWRIGNAGPERGTKNTLELKARITANGDRLAITGQKFYSTGALFAHWVAVKALDDQGRQIMAFIERGTPGLRIVDDWSGFGQRTTASGTVLLDNVPVDAGRVVDNWRLSLTPNIQGAVSQLIQAAIDAGIARGAIDDAIAFVREKSRPWVDANVERASDDLYVIADIGKLKLELHAAEALLRKAGQELDEISAAPIDEHSAARASIAVARAKVLTTEISLLASEKLFELAGSRATLAEFNLDRHWRNARVHTLHDPVRWKYHAVGTWHLNGTLPARHSWI
>NZ_CP005969.1|WP_003403135.1|442603_443323_-|hypothetical-protein
MSQNTCKASPMSLPIPAVPLASRHGIGVRNASQLVVHVDPYGSMEEGDLIELFWDGCYVASTILKASDVGKPVVLRVPESFLQNGKARTYYRVMKIGGVPVTSPCRKLWVKLDAPGGLLVSASTEENQGLAPLYVAPSVIRHGLSRRHLEGGLPMTIEPYLNMAVHDEITIRWGDLRMDLPPLTADDIGEPVDLVVPPELIREGGDEQRLEVSYCVIDRVGNNSLWAPPRIIRIQPLGH
>NZ_CP005969.1|WP_024639247.1|443900_444644_-|L-cystine-ABC-transporter-ATP-binding-protein-YecC
MIVVEKLTKAFKGNQVLKGIDLRIEAGEVVAIIGPSGSGKTTLLRCLNLLETPDSGRIKVGDIEIDGTRSMNQQQGLIRQLRQQVGFVFQNFNLFPHRTALENVIEGPVVVKKVAREAAEALGRKLLAKVGLSGKEDAYPRRLSGGQQQRVAIARALAMEPQVILFDEPTSALDPELVGEVLTTIRALAEEKRTMVIVTHEMSFAREVANRVIFIDKGVIVEQGEAKALFANPKEERTRQFLERTRS
>NZ_CP005969.1|WP_003403129.1|444647_445316_-|cystine-ABC-transporter-permease
MIEESLQLALDSAPFLLKGAYYTVFLSLGGMFFGLLLGFGLALMRLSRIKPVNWIARIYVSFFRGTPLLVQLFVIYYGLPELGIQLEPLSAALIGFSLNMAAYACEILRAAISSVERGQWEAAASIGMTRWQTMRRAILPQAARTALPPLGNSFISLVKDTALAATIQVPELFRQAQLITARTFEIFTMYLAAALIYWILATALSHLQNKLEARVNRHDLET
>NZ_CP005969.1|WP_024640802.1|445312_446110_-|cystine-ABC-transporter-substrate-binding-protein
MNISAIRRTFLFSAMGLMLSAGIAGQAMAGEQLQKIKDSGTLNVGLEGTYPPFSFVDESGKLTGFEVEFSEALAKELGVKAKIQPSKWDGILAALDSKRLDVVINQVTISDERKKKYDFSEPYTISGIQALVLKKNADTIKSAKDLSGKKVGVGLGTNYEEWLKANVPDAIVKTYDDDPSKIQDLSVGRIDAILVDRLAALEMAAKTKNKLVPAGEAFSRQASGIALRKGEPELLAAIDKAIDKLRADGTLKKLSEKYFNADVTQ
>NZ_CP005969.1|WP_032655496.1|446329_447328_-|D-cysteine-desulfhydrase
MIKNQLARFNRLDLISAPTALEKLERLSIWADRDIYIKRDDTTTLALGGNKVRKLEYLAADALAQGADTLITAGAIQSNHVRQTAALAARLGLGCVALLENPIGTEDPSYLKNGNRLLLELFDAKVELVENLDNADEQLHALAARLRSSGKKPYLVPIGGSSPVGALGYVRAGLELAEQIKQTGIEFAAVVLASGSAGTHSGLALALAHELPQLPVIGVTVSRSEEAQLPKVQSLAERTAELLGVALPEHFKVELWDEYFAPRYGEPNAGTLSAIKLVASHEGLLLDPVYTGKAMSGLLDGIGRQRFNDGPLIFLHTGGAPALFAYPDAFDQ
>NZ_CP005969.1|WP_003414200.1|447525_448479_+|serine-acetyltransferase
MSDIPEASADGRSSHWQLQRIVSQLRGAREDWRARNRRVSGEHGGRELPSRAAMGEILEALSGALFPMRLGPVDLREESEDFYVGHTLDVALNALLAQARLELRYVAHQQGGDLKSIDARALELIQGFAMALPGIRLLLDTDVLAAYHGDPAARSVDEVLLCYPGILAVIHHRLAHYLYRAGLPLLARISSEIAHSATGIDIHPGAQIGPSFFIDHGTGVVIGETAIIGERVRIYQAVTLGAKRFPSDEDGQLQKGHARHPIVEDDVVIYAGATILGRITIGKGSTIGGNVWLTRSVPADCNLTQANLLQQDDCSRK
>NZ_CP005969.1|WP_024640803.1|448491_449199_-|anti-sigma-factor
MTRPLDDNIHELAGEYVLGTLSVQERLDVQRRLAREPDLRAAVDAWEQRLLPLTGLAEPVTPSPGLWDRIERNLLDMAAPASTPQRPRVRWWDNLSIWRGLAGAGLAASLVLGMTLLTRAPAQPSYLVVLVGPQDKAPGWVVQASNSQEIQLIPLGVFEVPTDKALEFWTKGDDWQGPVSLGLVKPGQSLHVPLDKLPPLQPNQLFELTLEKSTGSPIGKPTGPIQFIGRAVKVI

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Crispr_ID: NZ_CP005969_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP005969_2

540965-541085

Orphan

Consensus_repeat	Method
GATTCTGGCCGAAGGCCGCAGGAGCGACCGGGGCGGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP005969_2

>merge|NZ_CP005969|2|540965-541085|CRISPRCasFinder
GATTCTGGCCGAAGGCCGCAGGAGCGACCGGGGCGGCGACCCGCTTTGTTCGCGAAGGCTCGTCATGCAGAAGTCCGCTCTGGATTCTGGCCGAAGGCCGTAGGAGCGACCGGGGCGGCGA

>NZ_CP005969|2|2|540965-541085|CRISPRCasFinder
GATTCTGGCCGAAGGCCGCAGGAGCGACCGGGGCGGCGA	CCCGCTTTGTTCGCGAAGGCTCGTCATGCAGAAGTCCGCTCTG
GATTCTGGCCGAAGGCCGTAGGAGCGACCGGGGCGGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP005969.1\|WP_032655089.1\|533920_534868_-\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|226712
NZ_CP005969.1\|WP_003378771.1\|548386_549151_+\|malonate-transporter-subunit-MadM	unknown	unknown	gnl\|CDD\|129890
NZ_CP005969.1\|WP_032655086.1\|533405_533855_-\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|238329
NZ_CP005969.1\|WP_003316688.1\|538090_538351_-\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|181682
NZ_CP005969.1\|WP_003402946.1\|549152_550079_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176108
NZ_CP005969.1\|WP_032655103.1\|545534_546335_+\|biotin-independent-malonate-decarboxylase-subunit-gamma	unknown	unknown	gnl\|CDD\|274441
NZ_CP005969.1\|WP_011266401.1\|537826_538081_-\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|180033
NZ_CP005969.1\|WP_011266403.1\|540142_540922_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP005969.1\|WP_011266411.1\|546963_547899_+\|malonate-decarboxylase-subunit-epsilon	unknown	unknown	gnl\|CDD\|132175
NZ_CP005969.1\|WP_024640819.1\|546328_546967_+\|malonate-decarboxylase-holo-ACP-synthase	unknown	unknown	gnl\|CDD\|234936
NZ_CP005969.1\|WP_003402948.1\|547968_548385_+\|malonate-transporter-subunit-MadL	unknown	unknown	gnl\|CDD\|367674
NZ_CP005969.1\|WP_032655131.1\|535591_537274_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|223442
NZ_CP005969.1\|WP_011266400.1\|537284_537830_-\|membrane-protein	unknown	unknown	gnl\|CDD\|226995
NZ_CP005969.1\|WP_032655097.1\|539113_539833_-\|beta-ketoacyl-synthase-chain-length-factor	unknown	unknown	gnl\|CDD\|379349
NZ_CP005969.1\|WP_003316694.1\|544394_544694_+\|malonate-decarboxylase-subunit-delta	unknown	unknown	gnl\|CDD\|179253
NZ_CP005969.1\|WP_003402963.1\|541841_543518_+\|malonate-decarboxylase-subunit-alpha	unknown	unknown	gnl\|CDD\|379906
NZ_CP005969.1\|WP_032655100.1\|543517_544393_+\|triphosphoribosyl-dephospho-CoA-synthase	unknown	unknown	gnl\|CDD\|234927
NZ_CP005969.1\|WP_032655095.1\|538325_539138_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_CP005969.1\|WP_032655092.1\|534864_535599_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133022
NZ_CP005969.1\|WP_011266408.1\|544686_545538_+\|biotin-independent-malonate-decarboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|235954

Protein	Function_ID	Function_description	E-value
NZ_CP005969.1\|WP_032655089.1\|533920_534868_-\|glycosyl-transferase	gnl\|CDD\|226712	COG4261, COG4261, Predicted acyltransferase [General function prediction only].	1.04204e-85
NZ_CP005969.1\|WP_003378771.1\|548386_549151_+\|malonate-transporter-subunit-MadM	gnl\|CDD\|129890	TIGR00808, malonate_transporter, malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.07173e-121
NZ_CP005969.1\|WP_032655086.1\|533405_533855_-\|acyl-CoA-thioesterase	gnl\|CDD\|238329	cd00586, 4HBT, 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).	7.3648e-28
NZ_CP005969.1\|WP_003316688.1\|538090_538351_-\|acyl-carrier-protein	gnl\|CDD\|181682	PRK09184, PRK09184, acyl carrier protein; Provisional.	4.83973e-23
NZ_CP005969.1\|WP_003402946.1\|549152_550079_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176108	cd08416, PBP2_MdcR, The C-terminal substrate-binding domian of LysR-type transcriptional regulator MdcR, which involved in the malonate catabolism contains the type 2 periplasmic binding fold. This family includes the C-terminal substrate binding domain of LysR-type transcriptional regulator (LTTR) MdcR that controls the expression of the malonate decarboxylase (mdc) genes. Like other members of the LTTRs, MdcR is a positive regulatory protein for its target promoter and composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins (PBP2). The PBP2 are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate- binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	2.07996e-118
NZ_CP005969.1\|WP_032655103.1\|545534_546335_+\|biotin-independent-malonate-decarboxylase-subunit-gamma	gnl\|CDD\|274441	TIGR03134, malonate_gamma, biotin-independent malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.	2.77976e-93
NZ_CP005969.1\|WP_011266401.1\|537826_538081_-\|acyl-carrier-protein	gnl\|CDD\|180033	PRK05350, PRK05350, acyl carrier protein; Provisional.	1.4645e-38
NZ_CP005969.1\|WP_011266403.1\|540142_540922_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	1.95588e-48
NZ_CP005969.1\|WP_011266411.1\|546963_547899_+\|malonate-decarboxylase-subunit-epsilon	gnl\|CDD\|132175	TIGR03131, malonate_mdcH, malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.	1.27757e-107
NZ_CP005969.1\|WP_024640819.1\|546328_546967_+\|malonate-decarboxylase-holo-ACP-synthase	gnl\|CDD\|234936	PRK01293, PRK01293, phosphoribosyl-dephospho-CoA transferase; Provisional.	2.31203e-97
NZ_CP005969.1\|WP_003402948.1\|547968_548385_+\|malonate-transporter-subunit-MadL	gnl\|CDD\|367674	pfam03817, MadL, Malonate transporter MadL subunit.	2.59319e-56
NZ_CP005969.1\|WP_032655131.1\|535591_537274_-\|AMP-binding-protein	gnl\|CDD\|223442	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism].	7.54687e-28
NZ_CP005969.1\|WP_011266400.1\|537284_537830_-\|membrane-protein	gnl\|CDD\|226995	COG4648, COG4648, Predicted membrane protein [Function unknown].	1.68462e-37
NZ_CP005969.1\|WP_032655097.1\|539113_539833_-\|beta-ketoacyl-synthase-chain-length-factor	gnl\|CDD\|379349	pfam13723, Ketoacyl-synt_2, Beta-ketoacyl synthase, N-terminal domain.	4.58642e-90
NZ_CP005969.1\|WP_003316694.1\|544394_544694_+\|malonate-decarboxylase-subunit-delta	gnl\|CDD\|179253	PRK01220, PRK01220, malonate decarboxylase subunit delta; Provisional.	2.22285e-66
NZ_CP005969.1\|WP_003402963.1\|541841_543518_+\|malonate-decarboxylase-subunit-alpha	gnl\|CDD\|379906	pfam16957, Mal_decarbox_Al, Malonate decarboxylase, alpha subunit, transporter. Mal_decarbox_Al is a family of Na+-transporting carboxylic acid decarboxylases.	0
NZ_CP005969.1\|WP_032655100.1\|543517_544393_+\|triphosphoribosyl-dephospho-CoA-synthase	gnl\|CDD\|234927	PRK01237, PRK01237, triphosphoribosyl-dephospho-CoA synthase; Validated.	3.58346e-156
NZ_CP005969.1\|WP_032655095.1\|538325_539138_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	6.05673e-32
NZ_CP005969.1\|WP_032655092.1\|534864_535599_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	3.06703e-39
NZ_CP005969.1\|WP_011266408.1\|544686_545538_+\|biotin-independent-malonate-decarboxylase-subunit-beta	gnl\|CDD\|235954	PRK07189, PRK07189, malonate decarboxylase subunit beta; Reviewed.	3.03738e-168

>NZ_CP005969.1|WP_011266403.1|540142_540922_+|ParA-family-protein
MRRVVFNQKGGVGKSSIACNLAAVSAHEGYRTLLIDLDAQANSTQYLTGLTGQDIPMGIAEFFKNTLSGSPVAKKNHVDIYETPFDNLHVVTATAELADLQPKLEAKHKINKLRKLLDELSEDYERIYLDTPPALNFYAVSALIASDRVLIPFDCDSFSRQALYGLMREIEELKEDHNEGLQVEGIIVNQFQPRASLPQQMLDELIAEGLPVLPVYLNASVKMRESHQANLPLIHLDPRHKLTQQFMELHHLLETNAHP
>NZ_CP005969.1|WP_032655097.1|539113_539833_-|beta-ketoacyl-synthase-chain-length-factor
MITFNIARWQAWAPGLASAEDWQRWSLDPTLLETSDAAPDASFLPAMQRRRLGRMARMAFAVGWPLTEGLGRVPLVFVSRHGETPRTFEILRDLAANEPLSPTQFSLSVHNAVIGLWSIMRGETSEMTALAATGDGLEYGAFEAAALLAEGAEAVLLVVTEEQPPQAYAQWIDDVPFPYAVGLLLTPGNEWQLSLNTDTQGTTRTQWPHALNLLRALHTDQSVCLHPWNNRLWNWQRSH
>NZ_CP005969.1|WP_032655095.1|538325_539138_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MELATQSLKKGRDAYYWRLLATGISFALFGLSGLCLRLFVFPVLGCLPGNVASHQRRARRTISRLFWLFIRIMARMRVLTYDMQGAEKLGRPGQMIIANHPSLIDVVFLIGLVRDANCVVKRSLWENPFTRGPVRATGYISNDGSMDMLDAAVERLQSGQTLIIFPEGTRTQPGQPPVFHRGAAAIALRGASVITPVTIKVQPTTLTKAEPWYRIPQRRVHFTLRVGADIDPTAFSALGPPPLASRKLNDYLHDYFTKELASDERSAPGH
>NZ_CP005969.1|WP_003316688.1|538090_538351_-|acyl-carrier-protein
MSDLHQDIKLLIIDALGLEDITPEDIGNDMTLFGEGLGLDSVDALELGLAIQKRYGIRIDADAKDTRNHFASVDSLAAFVSARQPA
>NZ_CP005969.1|WP_011266401.1|537826_538081_-|acyl-carrier-protein
MQTREDIFEILRAAMVELFELEPERVTLEANLYQDLEIDSIDAVDLIDHIKRKTGKKIAAEEFKSVRTVKDVVEAVYKLVNTAE
>NZ_CP005969.1|WP_011266400.1|537284_537830_-|membrane-protein
MKRLIGLILVLAGVLYPFAVYWGTEHFAPWQFALLLGSLWLARALTGERRQGSLAMAIVALIFCVVLGALDSHMMLRWYPVLVSTFMLGLFGSSLVYGPPIVEKMARLNRPDLPEAGIRYTRKVTQIWCLFFLVNGLTSAILTLWAPLSWWTLYTGLISYGLMGVLFAVEWIVRPPSAGGK
>NZ_CP005969.1|WP_032655131.1|535591_537274_-|AMP-binding-protein
MNWLNLEHLLLDALPDRLLTLAPTLDHTQFRDQALSVAAGLQARGITHLAVHLEDAADLAIALFAAWRAGVHVLLPADLQGQTRERWANQVDLWLTDLPGDTQLSDLRAAPLPAAALDLDQCRLSLCTSGSSGEPKLIEKRLRQLANEVCGLEQLWGAELGSACMIGSVATQHIYGLLFRLLWPLCAARPFMRRQLPFAEDLQRASREYTSFAWVASPALLKRMGDNLDWHSLAAVRRVFSSGGALPAEAAQSLQQRLGQWPTEILGSSETGGIAWRQGGQRWQAFDGVELSQDAQGALRISSPYLPPGHVEQTADAALIGEDGRFELLGRLDRIVKLEEKRVSLPLIEQALATHPWVSEARLGVVQANRASLGALLVLSDAGLLALRNQGRRALTEALRQYLQPHCETIALPRRWRLLRQMPLNAQGKLPQADVEALLLAPRSKQPEVLEQQNVEGELHLQLSVPPDLAFFSGHFPKAPILPGVVQVDWAISLAQRLLDLPRGFAGMEVLKFQQLVRPGDRLTLTLRFDAARSKLHFAFRNADNAPCSSGRILLEDDHA
>NZ_CP005969.1|WP_032655092.1|534864_535599_-|glycosyltransferase-family-2-protein
MHKPCVIIPVFDHELAVPNVVKAVRNAGLPCILVDDASSPACAAVLQQLAQDEAIYLLRLPVNQGKGGAVMAGFREAISLGFSHALQVDADGQHDLSDIPLFLEQSRQHPDALICGYPQFDESVPKGRLYARYLTHVWVWINTLSLHIRDSMCGFRLYPLAPVLALIDRVQIGRRMDFDSEMLVRLSWRGQPMRWLPTRVHYPQDGLSHFRLFHDNALISKMHAKLFFGMLVRLPMILWRRWRP
>NZ_CP005969.1|WP_032655089.1|533920_534868_-|glycosyl-transferase
MSIDKSPREHWASHQERGSFMLMKLTAWGMRVLGRRLLSPVLYGIVLYFFVFGRRARHSIWQYQQHLADWSGKPELRPGQRRVFGQFIAFADALLDKLDVWNGRLGIDQIEIVDQALLRQNLRGQRGQMLVGAHLGNLEVCRALAELGEKVTMNVLVHTKHAERFNRLLGEAGATHLRLIQVSELDPAIMLQLSQRLDEGEWLAIAGDRVALHGGRNVRVDFLGKPANFPQGPWLLAGLLKCPVNLFFCLKGAKGYRVILEPFADAIEWRRSDRAQVIEQWATRYAERLGHYCLEAPQQWFNFYPFWKSADESGS
>NZ_CP005969.1|WP_032655086.1|533405_533855_-|acyl-CoA-thioesterase
MRSKGFLHIDTEIVVPFFDVDMMNIVWHGHYVKYLEVARCALLDHIGHNYMQMLESGYGWPVIDLQLRYVRSAVFGQTLNVRASLVEWENRLKINYLITDAHTGERLTRASTVQVAVDSQSREMLLASPQVFIDAVKNALESTIESASP
>NZ_CP005969.1|WP_003402963.1|541841_543518_+|malonate-decarboxylase-subunit-alpha
MTTTTSPDARWTRRRSEKQRRLEQVRALADGVVLPTDNIVAALEALLVSGDRVVLEGNNQKQADFLSRALAKVDPGKVHDLHMIMPSVGRAEHLDLFEQGIARKLDFSFAGTQSLRISQLLEDGLLEIGAIHTYIELYSRLVVDLIPNVVLAAGFMADRAGNIYTGPSTEDTPALIEPAAFSDGIVIVQVNQLVDDVSELPRVDIPASWVDFVVVADKPFYIEPLFTRDPRHIKPVHVLMAMMAIRGIYEKHNVQSLNHGIGFNTAAIELILPTYGESLGLKGKICRNWTLNPHPTLIPAIESGWVESVHCFGTELGMENYIAARPDVFFTGRDGSLRSNRQLCQLAGQYAVDLFIGATLQVDGDGHSSTVTRGRLAGFGGAPNMGHDPRGRRHATPAWLDMRQQHDDGPAAYLERGKKLVVQMVETFQEGGKPTFVETLDAVEVAKKSGMPLAPIMIYGDDVTHLLTEEGIAYLYKARSLEERQAMIAAVAGVTVIGLRHNPKDTARMRREGLIALPEDLGIRRTDASRELLAAKSIADLVQWSGGLYNPPAKFRSW
>NZ_CP005969.1|WP_032655100.1|543517_544393_+|triphosphoribosyl-dephospho-CoA-synthase
MSALQWTPQPASLAERLADLAVDALIDEADLSPKPALVDRRGSGAHTDLHLGLMHSSALSLWPTFKWMADAATQFGVVGQPLREALGRLGREGEATMLRTTSGVNTHRGAIWALGLLVTAAALDAQECAPEAICARAAALSRIKDRQVLTQNSHGDQVVRRYGVMGAREQAQQGFPAVRLFALPQLQRSRAAGSGEQNARLDALLAIMTTLDDTCVLHRAGIEGLNAMQQGAQRVLDAGGSASLAGRRALNALDQHLLALNASPGGAADLLAACLFIDGLEPALGPVSRSA
>NZ_CP005969.1|WP_003316694.1|544394_544694_+|malonate-decarboxylase-subunit-delta
METLSFEFPAGQPPKGRALVGVVGSGDLEVLLEPGKPGTLSIQVVTSVNGASLRWQHLFERMFDGQTPPALSIDIHDFGATPGVVRLRLEQGFEEIGHD
>NZ_CP005969.1|WP_011266408.1|544686_545538_+|biotin-independent-malonate-decarboxylase-subunit-beta
MTDNARLLNQHSFIELGARQRARALLDAGSFRELLGPFDRVMSPWLAMQGVVPQADDGVVVGKGTVDGRPVVIAAIEGSFQGGSMGEVGGAKMAGALELAAEDNRNGIPTAAIVLLETGGVRLQEANLGLAAIAEIHAAIVDLRQYQPVIGVVAGSVGCFGGMSIAAGLCSYLLVTQEARLGLNGPQVIEQEAGIEEYDSRDRPFIWSLTGGEQRFASALVDGFAADDVADVRQQVSGWLKQGVPDTHRSSQYPLFLQRLASLDTEPQIDPQSVRTLYQGARS
>NZ_CP005969.1|WP_032655103.1|545534_546335_+|biotin-independent-malonate-decarboxylase-subunit-gamma
MSHSQRGLNWFNALSAGAREVTGLPASLKVADGVLGEQPVRFLAVIADTDNRFPRARQGEVGLLEGWGLAKAVDEAIEQDRDRAEKRALIAIVDVPSQAYGRREEALGIHQALAGAVDSYARARLAGHPVIGLLVGKAMSGAFLAHGYQANRLIALRDPGVMVHAMGKASAARVTLRSVEDLEKLAASIPPMAYDIDSYASLGLLWETLTVKQIEQPAADDLVQVRSVLSSAIKDVQARGVDLSSRLGASNRAASVNVRQLLRAQW
>NZ_CP005969.1|WP_024640819.1|546328_546967_+|malonate-decarboxylase-holo-ACP-synthase
MVISNTGAVLPHDLLWGMPLTALPDDAPKWAVEAVLAGQPVVVRRQAMPAGQVAVGLRGRGREQRYAASMPLAEVCRRVMPEQLIDAPTEIHQQWPALQALRQIRPVMEALELDWGVGGSAGFELASGIAALHQDSDLDLILRTPGRLNRRCAAELVEALETSVCRVDVQLQLESGAVALREWARPTGRVLLKTATGARLVADPWHLGQVCA
>NZ_CP005969.1|WP_011266411.1|546963_547899_+|malonate-decarboxylase-subunit-epsilon
MSSLWVFPGQGSQQTGMLHQLPDEAVVRDCLQEAADALGEDVLALDTAGALQATRAVQLCLLIAGVACARVLQARDCVPDYLAGLSIGAYPAAVVSGALAFDDAVRLVALRGELMQSAWPQGYGMTALIGLDQTQVEALIGQVHSAKTPVFLANINADNQMVISGSAEAMHQVGQLAKAAGAAAVKRLAVSVPSHCALLDAPAQQLAEAFSRVALQAPTLRYLSGSTARPVLSAEKLRDDLAFNMCRVIDWRSTVETAWERGVRLHIELPPGSVLTGLARKVFQQGSALAFQAARLDSLVALSREEGRRTP
>NZ_CP005969.1|WP_003402948.1|547968_548385_+|malonate-transporter-subunit-MadL
MIIYGVALLAICTLAGVILGDMLGVLLGVKSNVGGVGIAMILLICARLWMEKHGGMSKDCEMGVGFWGALYIPVVVAMAAQQNVVTALKGGPVAVLAAVGSVVLCACTIALISRTNRGEPLPKEEPLLTPEIAPAGGR
>NZ_CP005969.1|WP_003378771.1|548386_549151_+|malonate-transporter-subunit-MadM
MWDLIEKGLEHNGLITAFAFVGIIMWVSVVLSKRLTFGRVHGSAIAIVIGLILAWVGGTLTGGQKGLADITLFSGIGLMGGAMLRDFAIVATAFEVQATEARKAGLIGVIALLLGTILPFIVGASIAWMFGYRDAISMTTIGAGAVTYIVGPVTGAALGATSDVMALSIATGLIKAILVMVGTPMAARWMGLDNPRSAMVFGGLAGTVSGVTAGLAATDRRLVPYGALTATFHTGLGCLLGPSVLYFIVRAIVG
>NZ_CP005969.1|WP_003402946.1|549152_550079_-|LysR-family-transcriptional-regulator
MQIDDELTLKKLEIFLAFMRTGNLARAAEELQTSNVSVHRAIHSLESALRCPLFKHEGRNLTPLESAYVLEERAQKLVQDVLATVELTRQAAGFSAARFRLGALYSLTVKTVPQLIMGLKIRRSELNIDLILGSNMDLLYKLKNMEVDAMLVSLDESTHDPDCEHLALFSDDIFLAVPTDSPFAEHPEVDLSDLREATFITLTQGFATHRDGIRVFQQAGFEPKVAMQVNDIFTLLSMVSSGVGYALLPGRIAAVYENRVRLIPLQSRYRMQQHIGIVFLKSKQRDPNLLALLAECRMYTNRLLEQTT

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Crispr_ID: NZ_CP005969_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP005969_3

692409-692502

Orphan

Consensus_repeat	Method
TGGTGATCTTGCGGGCACCTATCG	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP005969_3

>merge|NZ_CP005969|3|692409-692502|CRISPRCasFinder
TGGTGATCTTGCGGGCACCTATCGCTCCTCACGCCCCGGTGCGGCATGCCCGCGCTGGGGCCGGGCCAGGTGGTGATCTTGCGGACACCTATCG

>NZ_CP005969|3|3|692409-692502|CRISPRCasFinder
TGGTGATCTTGCGGGCACCTATCG	CTCCTCACGCCCCGGTGCGGCATGCCCGCGCTGGGGCCGGGCCAGG
TGGTGATCTTGCGGACACCTATCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP005969.1\|WP_003402899.1\|699531_701067_-\|HDOD-domain-containing-protein	unknown	unknown	gnl\|CDD\|370050
NZ_CP005969.1\|WP_003366295.1\|703240_704272_-\|small-ribosomal-subunit-biogenesis-GTPase-RsgA	unknown	unknown	gnl\|CDD\|237039
NZ_CP005969.1\|WP_024641182.1\|691543_692239_+\|membrane-integrity-associated-transporter-subunit-PqiC	unknown	unknown	gnl\|CDD\|377153
NZ_CP005969.1\|WP_016567051.1\|683248_683656_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005969.1\|WP_024641179.1\|683646_684018_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005969.1\|WP_032657139.1\|687598_688576_+\|esterase-like-activity-of-phytase-family-protein	unknown	unknown	gnl\|CDD\|379191
NZ_CP005969.1\|WP_003402884.1\|694333_695548_+\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|319803
NZ_CP005969.1\|WP_003402902.1\|702129_703179_+\|flagellar-motor-protein-MotB	unknown	unknown	gnl\|CDD\|236365
NZ_CP005969.1\|WP_080278098.1\|697653_699486_-\|phosphatidylserine-decarboxylase	unknown	unknown	gnl\|CDD\|104071
NZ_CP005969.1\|WP_024642705.1\|704380_704917_+\|oligoribonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235429
NZ_CP005969.1\|WP_032657143.1\|682599_683052_+\|DUF1249-domain-containing-protein	unknown	unknown	gnl\|CDD\|225693
NZ_CP005969.1\|WP_046722213.1\|685694_687602_+\|DNA-topoisomerase-IV-subunit-B	unknown	unknown	gnl\|CDD\|235501
NZ_CP005969.1\|WP_032657141.1\|684105_684912_+\|3',5'-cyclic-AMP-phosphodiesterase	unknown	unknown	gnl\|CDD\|182997
NZ_CP005969.1\|WP_162488891.1\|688614_689094_+\|TIGR02281-family-clan-AA-aspartic-protease	unknown	unknown	gnl\|CDD\|131334
NZ_CP005969.1\|WP_032657135.1\|689104_691360_+\|DNA-topoisomerase-IV-subunit-A	unknown	unknown	gnl\|CDD\|235503
NZ_CP005969.1\|WP_003402900.1\|701274_702126_+\|flagellar-motor-stator-protein-MotA	unknown	unknown	gnl\|CDD\|181655
NZ_CP005969.1\|WP_024641181.1\|685000_685618_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|225692
NZ_CP005969.1\|WP_003402883.1\|692661_694203_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226249
NZ_CP005969.1\|WP_003393544.1\|705013_705625_+\|trimeric-intracellular-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|225415
NZ_CP005969.1\|WP_024652402.1\|695613_697398_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP005969.1\|WP_024642705.1\|704380_704917_+\|oligoribonuclease	gnl\|CDD\|235429	PRK05359, PRK05359, oligoribonuclease; Provisional.	1.26635e-133
NZ_CP005969.1\|WP_003402899.1\|699531_701067_-\|HDOD-domain-containing-protein	gnl\|CDD\|370050	pfam08668, HDOD, HDOD domain.	3.24715e-08
NZ_CP005969.1\|WP_003366295.1\|703240_704272_-\|small-ribosomal-subunit-biogenesis-GTPase-RsgA	gnl\|CDD\|237039	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA.	0
NZ_CP005969.1\|WP_024641182.1\|691543_692239_+\|membrane-integrity-associated-transporter-subunit-PqiC	gnl\|CDD\|377153	pfam03886, ABC_trans_aux, ABC-type transport auxiliary lipoprotein component. ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide.	9.71642e-34
NZ_CP005969.1\|WP_003402902.1\|702129_703179_+\|flagellar-motor-protein-MotB	gnl\|CDD\|236365	PRK09041, motB, motility protein MotB.	3.56412e-175
NZ_CP005969.1\|WP_032657139.1\|687598_688576_+\|esterase-like-activity-of-phytase-family-protein	gnl\|CDD\|379191	pfam13449, Phytase-like, Esterase-like activity of phytase. This is a repeated domain that carries several highly conserved Glu and Asp residues indicating the likelihood that the domain incorporates the enzymic activity of the PLC-like phospho-diesterase part of the proteins.	9.71175e-09
NZ_CP005969.1\|WP_003402900.1\|701274_702126_+\|flagellar-motor-stator-protein-MotA	gnl\|CDD\|181655	PRK09110, PRK09110, flagellar motor stator protein MotA.	1.68547e-157
NZ_CP005969.1\|WP_080278098.1\|697653_699486_-\|phosphatidylserine-decarboxylase	gnl\|CDD\|104071	PRK09629, PRK09629, bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional.	0
NZ_CP005969.1\|WP_032657135.1\|689104_691360_+\|DNA-topoisomerase-IV-subunit-A	gnl\|CDD\|235503	PRK05561, PRK05561, DNA topoisomerase 4 subunit A.	0
NZ_CP005969.1\|WP_032657143.1\|682599_683052_+\|DUF1249-domain-containing-protein	gnl\|CDD\|225693	COG3151, COG3151, Uncharacterized protein conserved in bacteria [Function unknown].	2.07707e-56
NZ_CP005969.1\|WP_046722213.1\|685694_687602_+\|DNA-topoisomerase-IV-subunit-B	gnl\|CDD\|235501	PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.	0
NZ_CP005969.1\|WP_032657141.1\|684105_684912_+\|3',5'-cyclic-AMP-phosphodiesterase	gnl\|CDD\|182997	PRK11148, PRK11148, cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional.	1.34578e-96
NZ_CP005969.1\|WP_162488891.1\|688614_689094_+\|TIGR02281-family-clan-AA-aspartic-protease	gnl\|CDD\|131334	TIGR02281, Uncharacterized_protein_RP867, clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria). [Protein fate, Degradation of proteins, peptides, and glycopeptides].	2.26073e-48
NZ_CP005969.1\|WP_003402884.1\|694333_695548_+\|phosphoserine-phosphatase-SerB	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.81103e-103
NZ_CP005969.1\|WP_024641181.1\|685000_685618_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|225692	COG3150, COG3150, Predicted esterase [General function prediction only].	4.15346e-71
NZ_CP005969.1\|WP_003402883.1\|692661_694203_-\|HAMP-domain-containing-protein	gnl\|CDD\|226249	COG3726, AhpA, Uncharacterized membrane protein affecting hemolysin expression [General function prediction only].	3.92741e-45
NZ_CP005969.1\|WP_003393544.1\|705013_705625_+\|trimeric-intracellular-cation-channel-family-protein	gnl\|CDD\|225415	COG2860, COG2860, Predicted membrane protein [Function unknown].	2.42618e-82

>NZ_CP005969.1|WP_024641182.1|691543_692239_+|membrane-integrity-associated-transporter-subunit-PqiC
MNFLRLPLILLMTGVLGLAGCSVRQPTALYQLDSGEPGQPKQSSGLAVLLGPVSVADYLQRETLLQRQPDGTLTASSDGRWAGNLSSDIDQLLLRQLAWKLDSQRVVMAPATASFTPDVQVVLSITRLDSGAKQPAVLDAQWRLLDRKGHVRDSRLVHLEQVHAGSSADQVKAQGMLLQRLADQVSTAIKPISWQALDEPKKTPVAKAKEPDKPRIPLASPIRTDLEVFRF
>NZ_CP005969.1|WP_032657135.1|689104_691360_+|DNA-topoisomerase-IV-subunit-A
MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPPHNLREVASACVRLLDDPKATVAELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMRAVYRIEDGDIIVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLGEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFDLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLSSESKLRKLVRAELIADAETYGDERRSPIVARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATFECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEGRMLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAVIGQGATLVLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALLVENS
>NZ_CP005969.1|WP_162488891.1|688614_689094_+|TIGR02281-family-clan-AA-aspartic-protease
MIMAWAAGLFLATRFFGDWEDRQQNPNAVVTSQHGDGYIEVQLAGNRQGHFVTTGQINGRTVAFMIDTGATDVAVPGDMADRLGLKRGFPVTVSTANGNSQGFRTTLDRLQLGDIVLTNVRALVAPGLDGEQVLLGMSAMKQLEFTQRGGNLLLRQSTK
>NZ_CP005969.1|WP_032657139.1|687598_688576_+|esterase-like-activity-of-phytase-family-protein
MIRAWLAALILIAAPVVAAPLEALKLQSEHPVDDMAGGNLSGLAMCNGQLWTVSDRDDDVLYSLDVSQDTWKAQSHHIDAPAPQSYLPLKLRFMAGLSALIRGGSLDFEGVSCDAAGNRYLVSEAYGTVLKVPVSGKPFWLDLPKELVDQARAQGMLQRFNAIFEGIAVSPAGDRLWLAAEREKRGLLVVQRDKEQWTCGQSCVLLSESGLDALPPEQGSKKVSTDFSDVSLYNGKLFTLERAVYRICRRDLETGQIERCWSFAKEAMVPSRRYDQPYGLTEALVVDEKGAWIGIDNNFGVRADGEKRPIVWRFAAPEAGWSAGQ
>NZ_CP005969.1|WP_046722213.1|685694_687602_+|DNA-topoisomerase-IV-subunit-B
MANPSASSYNADAIEVLSGLDPVRKRPGMYTDTSRPNHLAQEVIDNSVDEALAGHARSVQVILHADNSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVVGTVGKRNTGTSVYFAPDPKYFDTPKFSVSRLKHVLKAKAVLCPGLLVSFEDKSSGEKVEWHYEDGLRSYLQDSVTEFLRLPDEPFCGSFTGNKEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLKASKKVERKRITQGPALPGKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAVAIGVDPGAADISQLRYGKICILADADSDGLHIATLLLCALFVQHFRPLVDAGHVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDFAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVLT
>NZ_CP005969.1|WP_024641181.1|685000_685618_+|alpha/beta-fold-hydrolase
MTSDTPSLLYIHGLNSSALSRKACQLSALMKSLGLADRLQVPELHHHPRQAMLQLEAAITALGRPLLVGSSLGGYYATHLAQRHGLKAVLINPAVNPHQLFDGFLGVQQNLYTGEQWQLTEDHIRALAELEVPAPQDPQQFQVWLQTGDETLDYRRAEKFYRNCALRIQAGGDHSFQGFAEHMPALLTVAGFAPDLLQKIDLSAL
>NZ_CP005969.1|WP_032657141.1|684105_684912_+|3',5'-cyclic-AMP-phosphodiesterase
MPSAALSSSVLLVQLSDSHLFAEADGALLGMSTRDSLEKVVDRVLAEQPHIDLVVASGDISQDGSVESYEAFRRISGRIDAPARWFAGNHDELPQMEQVAQHNGLLDPVVDIGQWRVTLLDSAVPGSVPGFLADTQLQLLEQSLSEAPDRHHLICLHHHPVAIGCEWMAPIGLRNADALFAVLDRFAQVRAILWGHVHQEFDQMRNGVRLLASPSTCIQFAPGSADFKVDTTAPGYRWLRLHDDGRLETAVSRVVGLEFEVDYGGTGY
>NZ_CP005969.1|WP_024641179.1|683646_684018_+|hypothetical-protein
MAMIIYRALIGGFTGLIFGLLLYVGLIILTGSTLRGEHSLYMAIIGAVIGILSLRLMPWIVHLAGLAGMILGVALELLLAGYLWPGMPYERVLSYLLGAGLAGMVSAGLIASIVLKHRANQQM
>NZ_CP005969.1|WP_016567051.1|683248_683656_+|hypothetical-protein
MSYLGSHLNHCRAVPFNWYDTWLVVVSGDGPNICGHALLKAGEFYFHIAGLAERPYFMSETDYRRYLNESSKTELFRRRILLTEPDAAQRKLEELSAKPWHWFGIPNNCVSYVEEIFSAGGSRESMITNCPVRWR
>NZ_CP005969.1|WP_032657143.1|682599_683052_+|DUF1249-domain-containing-protein
MVVNLLRERYRVDLAGLQAACEANYARLMRLLPDMRNEQRSRRVAVTQGDQMLGVLAVEVLLDCPYTTTLQVCQEHSLPWLPVPKLEVQVYHDARMAEVIGAEHARRFRGIYPYPNADMHQPDEKAQLNLFLGEWLSHCLACGHEFEAVR
>NZ_CP005969.1|WP_003402883.1|692661_694203_-|HAMP-domain-containing-protein
MNRPTPVKTDNFFLLIFRALRHRRVPIALRIASHNVILVALALVIYAGVMGLQFKQAMHEQADALGQALTTQTATSATELLVSNDILSLNVLLGNLVKNPLVAHAAIYSVDNRILAEAGQRPKNGLLGEAQGLYEIKITFQDVMAGHLRISLDMSQFQQPLTISLQSMGILAGILLALALALSLRLGRHISTPLMQMRIWLRDIDPYTPATDRQDEIGDLARQLRTSFAPPVPEPEPLPEPEYDGEEDDSEDPYLEPEEKPAPVVSARSSEAKPRLPAPPVQRRIVAEEDEDDDEDPFADLRDHSDNSPAVRPAAASVAPVEPHNSAVLAVQLGAQDQLRRLPRARLTELLQRYRDCLDQAASLYESELHTLNDGSTLMLFHSHESGDDYLTNAICCGELLRALSHALQIEVADSGITLQLQLGLTLGEGLSGLSQIDLLLTETAQDALALSQHSRNLLLVERRINDDPLIRQRARIRPIASPEGACCVERLMEPYPSMLERQLARMHESNKA
>NZ_CP005969.1|WP_003402884.1|694333_695548_+|phosphoserine-phosphatase-SerB
MREIVLINITGVDRPGLTAAITGVLAQGGVNILDIGQAVIHDTLSFGILVEIPDTVQGSSVLKDILFTAYELDQQVRFTAVSETDYQHWVEGQGKARHIVTLLTRKVTAEQLQRVSAITARYGLNIDQIDRLSGRMPLDTPADKGKGCIEFTVRGEPADPKAMQAEFLAVAQDLDVDIAFQQDSLFRRNRRLAVFDMDSTLIEAEVIDELAKAAGVGEQVSEITERAMRGELDFSESFKERLALLKGLDVSVLDEIGASLRLTEGAETLFSELKRLGYKTAILSGGFTYFAKQLQAKLGIDYVFANELEVVDGKVTGVAVEPIVNAQRKADLLRELAHKEGLSLEQTIAVGDGANDLPMLAIAGLGVAFRAKPLVKQSAKQAISTLGLDGVLYLLGLRDREGKR
>NZ_CP005969.1|WP_024652402.1|695613_697398_-|hypothetical-protein
MSNFSLPLLLRAPTPTQSSLTFSEANPRDLKRWISRLPKANLGEMARQLYQGLTELNQLITPSENRLQLLELLRPEVYFVCKHLERHFLNQAIVLDERPRKVANLCQALQNHLATGYKQIIQQVAPRYTRDQAGLFSTALQRAVHGLNGPLIRANQLYCPVQDGLWLELHQIYQIARQYQLHNTPVEEPLAHHSKVLSVEQTYVIALLMGCSRCNQMRQLNIGKLADALEAWSALVKLQSPATQSSLFALDPTADKPPLYRTLFSDEQSPRLLGINTLALAEAINQYLALPDDQRTPSPLLIPTGINTDLLQHLAVAWGDVAERTFQRTPGQGTLRLCIGMSALHFYVAGQKSFSELLQLNSATSAASFSLKMANDDADDPWASAFDTQRGKTSSVLLPYEEIEYPKNDGDSDSLSNNQHTFPTFDLNIVNHSPGGYCLAWQKDVPQQLQAGELVGIQDDAGQGWSVAIVRWIRQVRSGGTQMGIELIAPFAQPCGMQLIREQQNSQYLRTLMLPEVRAMEKPPTVLAPRLPFQEGSMVMVNVNGEERRASLSNRQVSSASYNQFEYQMYDAPKAAETEKAMPDQEFDSLWGTL
>NZ_CP005969.1|WP_080278098.1|697653_699486_-|phosphatidylserine-decarboxylase
MYAFTGLSLVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGTPPAPGLLPDTAGLEQVFGELGHNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSRYHYLDGGLLAWKAQLLPLSTDVPPAADTPVTLTLHDEPTATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKEIITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVPNVAAAPVEAVEVAQPVEPPQPAPAETVEPVRATEPGRTSQKYSGHSSSGPSMKDRLFIISQYLLPHHLLSRLAGCVAECRVRWFKNAFTAWFARRYQVDMSQALVEDLTSYEHFNAFFTRALKADARPLDATPGAILSPADGAISQLGPIDHGRIFQAKGHSFSVLELLGGDPKLSAPFMGGEFATVYLSPKDYHRVHMPLAGTLSEMVYVPGRIFSVNQTTAENVPELFARNERVVCLFDTERGPMAVVLVGAMIVASVETVWAGLVTPPKRELKTFSYDEAARAPIHLEKGAEMSRFKLGSTAIVLFGPGQVKWAEQLTAGSKVQMGQALAVPAQA
>NZ_CP005969.1|WP_003402899.1|699531_701067_-|HDOD-domain-containing-protein
MPTVHAAHHLVPKTLDAWVKLLDGIALPVPAVNHGHVRAALNDSRRSLREIAEMMQESPALVLSVMREANHHTHGLTEQAESLEIAINRLGLARTEVLLGRLPAKPPEEIPAAYRQLILVSQHATQQANGLFASRLARLWQDIHMGSLLFLSPLWPMALAYPKLLEELELRVIHKGHSSAAVEKELFGVNLLELCLALAEFWRLPIWVTRGYKLLINERRDLAKALRIAREDNSPLQQQQLMDDDPNLRRWLNQPANTVLLGNGLALAAQNAWNSPHCLRWERLTSLYLQQSISEVQQQAHQNAASSARVHAEKDLWHPAESLIWPWDARRVRRDNEPAPPPSADALQMWRKQCAELLQDPSPFINAMHLTTSARDAFISCGMERVMLLMLDKTSTVLRVNQTAGLPKDAAALQLFIKESTVLQRLLTQPTQLRMTPANSAQFAALLPPPLKTLFSGQHWLIRSLSNNGKVMLLVVADQGGGALSEISVQAFGKTAQCIERALGIFSHRKA
>NZ_CP005969.1|WP_003402900.1|701274_702126_+|flagellar-motor-stator-protein-MotA
MAKIIGIIVVLASVIGGYVLSHGKVMALFQPYEVLIIGGAALGAFLQANPGYMFMHVFKKSLKMFGTRFTHAYYLEVLGLVYEILNKSRREGMMAIEGDIEDAASSPIFAKYPGVLKDERMTAYICDYLRIMSSGNMAPHELEGLFDMELLSMKEDLEHPSHAITGIADGMPGFGIVAAVLGIVVTMASLGSGDKAAIGMHVGAALVGTFFGILAAYGFFGPLATSLAHDAKEEMNVYESIKASLVASASGMPPSLAVEFGRKVLYPLHRPSFSELEQAVRGR
>NZ_CP005969.1|WP_003402902.1|702129_703179_+|flagellar-motor-protein-MotB
MENNQPIIIKRVKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYFKDPVGFSDSGSPYVIDLGGSPEMSPNQTLNPEVQTTPSPDTVPLEAENAETKAEAVEQERLEMLLQELQTKVEENPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFEDILLALADTIKSVPNKVSISGHTDATPFVGSGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDRQNPTNPINRRIDIVVLTKKAQHRIEGDQNSGGAPATPAAPTAPAPAVPAAPGAPAAPGASTAAPPDPQAYAQPHEIRQKLNIFDDGKLRVEPAQN
>NZ_CP005969.1|WP_003366295.1|703240_704272_-|small-ribosomal-subunit-biogenesis-GTPase-RsgA
MAKRQLNRRQNWRIEKIQGERAARAAKRESATLETLEGGDLGPEQTGLVIAHFGVQVEVEAQEGEVTGQVFRCHLRANLPALVTGDRVVWRAGNQGIGVIVAQLPRTTELRRPDSRGQLKPVAANVDLIVIVFAPMPEPHANLIDRYLVAAEHAGIRPLLLLNKADLIDEQNAPALNALLAVYRTLGYPVLEVSAHHGDGMQSLQSQLDGHISVFVGQSGVGKSSLVNSLLPETDTRVGPLSEVSGQGTHTTTTARLFHFPRGGDLIDSPGIREFGLGHVSRADVEAGFIEFNDLIGTCRFRDCKHDREPGCALLKGLEDGRVQQQRMNSYRSIIASLPQDSY
>NZ_CP005969.1|WP_024642705.1|704380_704917_+|oligoribonuclease
MQNKQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTRQHGGSGLTQRVRESTVGMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPTLENYFHYRNLDVSTLKELAARWSPELKFKKGSTHLALDDIRESIAELRFYREHFIKP
>NZ_CP005969.1|WP_003393544.1|705013_705625_+|trimeric-intracellular-cation-channel-family-protein
MLLMLYLIAITAEAMTGALSAGRRGMDWFGVVLIACVTALGGGSVRDVLIGHYPLTWVKHPEYLVLTSVAALVTIFIAPLMRHLRSLFLVLDALGLVAFTLIGCMTALEAGHGLLIASVCGVITGVFGGILRDIFCNDIPLIFRRELYASVSFLAAWCFLLCQYLQLPDEQAVLITLFGGLLLRLLAIRFRWEMPKFVYKDEP

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Crispr_ID: NZ_CP005969_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP005969_4

1707969-1708105

Orphan

Consensus_repeat	Method
CCAATCCACCTGACATCACAGAACCGCTGTGTGACGCGGAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP005969_4

>merge|NZ_CP005969|4|1707969-1708105|CRISPRCasFinder
CCAATCCACCTGACATCACAGAACCGCTGTGTGACGCGGAGCGTCACGAACGGCATTACCACGCGGAGCGTGGGAACGATAGTCGGGCCCGAACGCCAATCCACCTGACATCACAGAACCTCTGTGTGACGCGGAGC

>NZ_CP005969|4|4|1707969-1708105|CRISPRCasFinder
CCAATCCACCTGACATCACAGAACCGCTGTGTGACGCGGAGC	GTCACGAACGGCATTACCACGCGGAGCGTGGGAACGATAGTCGGGCCCGAACG
CCAATCCACCTGACATCACAGAACCTCTGTGTGACGCGGAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP005969.1\|WP_004408362.1\|1711985_1713170_+\|patatin-like-phospholipase-family-protein	unknown	unknown	gnl\|CDD\|132848
NZ_CP005969.1\|WP_148561920.1\|1702155_1706043_+\|Ice-nucleation-protein	unknown	unknown	unknown
NZ_CP005969.1\|WP_011267124.1\|1699554_1700622_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270267
NZ_CP005969.1\|WP_003368369.1\|1710159_1710900_-\|septum-site-determining-protein-MinC	unknown	unknown	gnl\|CDD\|234730
NZ_CP005969.1\|WP_024639958.1\|1694334_1695297_+\|NAD(P)H-quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176180
NZ_CP005969.1\|WP_032656469.1\|1696055_1697045_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP005969.1\|WP_004408361.1\|1713211_1713448_-\|Rieske-2Fe-2S-domain-containing-protein	unknown	unknown	gnl\|CDD\|239550
NZ_CP005969.1\|WP_011267129.1\|1711020_1711953_+\|lipid-A-biosynthesis-lauroyl-acyltransferase	unknown	unknown	gnl\|CDD\|235543
NZ_CP005969.1\|WP_046722225.1\|1698669_1699476_-\|alkaline-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|224441
NZ_CP005969.1\|WP_024651338.1\|1714288_1715086_-\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|188630
NZ_CP005969.1\|WP_011267128.1\|1708135_1708771_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP005969.1\|WP_011267130.1\|1713431_1714289_-\|iron-containing-redox-enzyme-family-protein	unknown	unknown	gnl\|CDD\|379634
NZ_CP005969.1\|WP_004408565.1\|1697046_1697844_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
NZ_CP005969.1\|WP_024639961.1\|1700976_1701696_+\|UTRA-domain-containing-protein	unknown	unknown	gnl\|CDD\|132380
NZ_CP005969.1\|WP_032656467.1\|1695316_1695970_-\|HAD-IB-family-hydrolase	unknown	unknown	gnl\|CDD\|319796
NZ_CP005969.1\|WP_003317454.1\|1709115_1709928_-\|septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|225447
NZ_CP005969.1\|WP_011267127.1\|1706294_1707584_-\|M18-family-aminopeptidase	unknown	unknown	gnl\|CDD\|235073
NZ_CP005969.1\|WP_003317453.1\|1708861_1709116_-\|cell-division-topological-specificity-factor-MinE	unknown	unknown	gnl\|CDD\|234718
NZ_CP005969.1\|WP_011267132.1\|1715075_1715594_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005969.1\|WP_003421288.1\|1697830_1698673_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226616

Protein	Function_ID	Function_description	E-value
NZ_CP005969.1\|WP_004408362.1\|1711985_1713170_+\|patatin-like-phospholipase-family-protein	gnl\|CDD\|132848	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.	2.50264e-39
NZ_CP005969.1\|WP_011267124.1\|1699554_1700622_-\|extracellular-solute-binding-protein	gnl\|CDD\|270267	cd13549, PBP2_Fbp_like_3, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. This periplasmic domain (Fbp) has high affinity for ferric iron and serves as the primary receptor for transport. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.13833e-57
NZ_CP005969.1\|WP_003368369.1\|1710159_1710900_-\|septum-site-determining-protein-MinC	gnl\|CDD\|234730	PRK00339, minC, septum site-determining protein MinC.	8.00188e-159
NZ_CP005969.1\|WP_024639958.1\|1694334_1695297_+\|NAD(P)H-quinone-oxidoreductase	gnl\|CDD\|176180	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	6.52004e-151
NZ_CP005969.1\|WP_032656469.1\|1696055_1697045_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	2.41293e-146
NZ_CP005969.1\|WP_004408361.1\|1713211_1713448_-\|Rieske-2Fe-2S-domain-containing-protein	gnl\|CDD\|239550	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.	2.48988e-09
NZ_CP005969.1\|WP_011267129.1\|1711020_1711953_+\|lipid-A-biosynthesis-lauroyl-acyltransferase	gnl\|CDD\|235543	PRK05646, PRK05646, lipid A biosynthesis lauroyl acyltransferase; Provisional.	0
NZ_CP005969.1\|WP_046722225.1\|1698669_1699476_-\|alkaline-phosphatase-family-protein	gnl\|CDD\|224441	COG1524, COG1524, Uncharacterized proteins of the AP superfamily [General function prediction only].	5.33136e-40
NZ_CP005969.1\|WP_024651338.1\|1714288_1715086_-\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|188630	cd00408, DHDPS-like, Dihydrodipicolinate synthase family. Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.	5.66761e-37
NZ_CP005969.1\|WP_011267128.1\|1708135_1708771_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	2.57106e-78
NZ_CP005969.1\|WP_011267130.1\|1713431_1714289_-\|iron-containing-redox-enzyme-family-protein	gnl\|CDD\|379634	pfam14518, Haem_oxygenas_2, Iron-containing redox enzyme. The CADD, Chlamydia protein associating with death domains, crystal structure reveals a dimer of seven-helical bundles. Each bundle contains a di-iron centre adjacent to an internal cavity that forms an active site similar to that of methane mono-oxygenase hydrolase.	6.59427e-20
NZ_CP005969.1\|WP_004408565.1\|1697046_1697844_-\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	3.2364e-59
NZ_CP005969.1\|WP_024639961.1\|1700976_1701696_+\|UTRA-domain-containing-protein	gnl\|CDD\|132380	TIGR03337, phnR, phosphonate utilization transcriptional regulator PhnR. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Salmonella, Vibrio Aeromonas hydrophila, Hahella chejuensis and Psychromonas ingrahamii. [Regulatory functions, DNA interactions].	2.74565e-82
NZ_CP005969.1\|WP_032656467.1\|1695316_1695970_-\|HAD-IB-family-hydrolase	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.33371e-55
NZ_CP005969.1\|WP_003317454.1\|1709115_1709928_-\|septum-site-determining-protein-MinD	gnl\|CDD\|225447	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning].	7.8418e-167
NZ_CP005969.1\|WP_011267127.1\|1706294_1707584_-\|M18-family-aminopeptidase	gnl\|CDD\|235073	PRK02813, PRK02813, putative aminopeptidase 2; Provisional.	0
NZ_CP005969.1\|WP_003317453.1\|1708861_1709116_-\|cell-division-topological-specificity-factor-MinE	gnl\|CDD\|234718	PRK00296, minE, cell division topological specificity factor MinE; Reviewed.	1.35704e-46
NZ_CP005969.1\|WP_003421288.1\|1697830_1698673_-\|ABC-transporter-permease-subunit	gnl\|CDD\|226616	COG4132, COG4132, ABC-type uncharacterized transport system, permease component [General function prediction only].	4.03847e-111

>NZ_CP005969.1|WP_011267127.1|1706294_1707584_-|M18-family-aminopeptidase
MRAELNKGLIDFLKASPTPFHATATLVQHFEAAGFQRLDERDTWAVETGGRYFVTRNDSSIVAFRMGRQSPLSGGIRMVGAHTDSPCLRVKPQPELQRQGFWQLGVEVYGGALLAPWFDRDLSLAGRVTFRRDGKVESQLIDFKLPIAVIPNLAIHLNRTANEGWAINAQNELPPILAQVAGDERADFRALLTDQLAREHGLNADVVLDYELSFYDTQGAAVVGLNGDFLAGARLDNLLSCFAGMQALLNTESDETALLVCTDHEEVGSSSACGADGAMLEQIVQRLLPSSEDYVRTIQKSLLISADNAHGIHPNYADKHDANHGPKLNAGPVIKVNSNQRYATNSETAGFFRHLCMAEEVPVQSFVVRSDMGCGSTIGPITASHLGIRTVDIGLPTFAMHSIRELAGSHDLAHLVKVLSAFYASHELP
>NZ_CP005969.1|WP_148561920.1|1702155_1706043_+|Ice-nucleation-protein
MNLDKALVLRTCANNMADHCGLIWPASGTVESKYWQSTRRHENGLVGLLWGAGTSAFLSVHADARWIVCEVAVADIISLDEPGMVKFPRAEVVHVGDRISASHFISARQADPASTPPPTSMTTPPPTPAAAHVTLPVAASVTLPVAEQASHEVFDVALVIAAAPSVNTLPVTTPQNLQTATYGSTLSGDNHSRLIAGYGSNETAGNHSDLIAGYGSTGTAGSDSSLVAGYGSTQTAGGDSALTAGYGSTQTAREGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGEDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGGDSSLTAGYGSTQTAQEGSNLTSGYGSTGTAGADSSLIAGYGSTQTSGSDSALTAGYGSTQTAQQGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGSDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGVDSSLIAGYGSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGADSSLIAGYGSTQTSGSDSALTAGYGRRKAAIYGGLRQHWHGWCRSSLIAGYGSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGADSSLIAGYGSTQTSGSESSLTAGYGSTQTAREGSTLTAGYGSTGTAGADSSLIAGYGSTQTSGSESSLTAGYGSTQTAQQGSVLTSGYGSTQTAGAASNLTTGYGSTGTAGHESFIIAGYGSTQTAGHKSILTAGYGSTQTARDGSDLIAGYGSTGTSGSSSSLIAGYGSTQTASYKSMLTAGYGSTQTAREHSDLVAGYGSTSTAGSNSSLIAGYGSTQTAGFKSILTAGYGSTQTAQERSDLVAGYGSTSTAGYSSSLIAGYGSTQTAGYGSTLTTGYGSTQTAQENSSLTTGYGSTSTAGYSSSLIAGYGSTQTAGYESTLTAGYGSTQTAQERSDLVTGYGSTSTAGYASSLIAGYGSTQTAGYESTLTAGYGSTQTAQENSSLTTGYGSTSTAGFASSLIAGYGSTQTAGYKSTLTAGYGSTQTAEYGSSLTAGYGSTATAGQDSSLIAGYGSSLTSGIRSFLTAGYGSTLIAGLRSVLIAGYGSSLTSGIRSTLTAGYGSNQIASYGSSLIAGHESIQVAGNKSMLIAGKGSSQTAGFRSTLIAGAGSVQLAGDRSRLIAGADSNQTAGDRSKLLAGNNSYLTAGDRSKLTGGHDCTLMAGDQSRLTAGKNSILTAGARSKLIGSEGSTLSAGEDSTLIFRLWDGKRYRQLVAKTGENGVEADIPYYVNEDDDIVDKPDEEDDWIEVE
>NZ_CP005969.1|WP_024639961.1|1700976_1701696_+|UTRA-domain-containing-protein
MREDVPRAVTTICHALQEQIEHGLLPHGSKLPAERKLSEVFATTRITLREALLQLESQGLIYREERRGWFISPPRLAYDLIRRSHFHAMVCAQGRVPHTQLLSARLQPASAMICEMLELPALSSVIQICRARRIDQRLVLYVEHYLRPELFPGILEHDLNESLTALYARCYDIHCGRVRFDMVPTSLHSEASAALKVSLGSPGLRIARVNYDRKDRLIDCDLEYWRHDAIHVRAEVHGD
>NZ_CP005969.1|WP_011267124.1|1699554_1700622_-|extracellular-solute-binding-protein
MKHLLLASLLGSAMAMSSLVMAADTDLKTLEAAAKAEGAVNSLGMPDDWANWGGIWKDLEAKYGLKHMDTDMSSAQEIAKFEAEKDNASGDIGDVGAAFGPIAAAKGVTQPYKPTTWEQIPTWAKDTDGHWALAYTGTIAFIVNKNLLHGSDIPKSWADLKTGKYKVSIGDVSTAAQAANGVLAAAIAMKGDESNIAPGLALFTDLAKQKRLSLANPTIQTIEKGEIEVGVVWDFNGLSYKAKMTKPDDYVVLIPSDGSVISGYTTIINKYAKHPNAAKLAREYTFSDAGQIRLAEGNARPIRVEHIKLPEDVQAKLLPQDQYKNAKPIKNADAWEKTSKALPQMWNEQVIIEMN
>NZ_CP005969.1|WP_046722225.1|1698669_1699476_-|alkaline-phosphatase-family-protein
MKHNVILIVLDGLNYEVARHAMGHLQAWHDAGRAALYKIECELPALSRPLYECILTGVAPIHSGIVHNNVSRLSNQRSIFHYARDAGLSTAAAAYHWVSELYNRTPFDPARDRHTEAADLPIQHGLFYWADHYPDSHLFADAESLRLSHAPNFLLIHPMNIDDAGHKHGLDTAQYRNSARSADIILADYLQRWLDAGYQVLVTADHGMNNDRSHNGLLPEEREVPLFVIGDAFSLNVDAAPRQTDLCGTVCELLGVPHDKAVCREILN
>NZ_CP005969.1|WP_003421288.1|1697830_1698673_-|ABC-transporter-permease-subunit
MTTFSRGKWLGLLCLLPFAVFFIVFQIAPLLWVAIHSLQSDAGWGWENFTRAFSSKFYRQAIQYSLEISFWSSLFGIIISVLGAYSLRKVDSRLRDFVNSFANMTSNFAGVPLAFAFIILLGFNGALTLILKQTGIIDDFNLYSKTGLIILYTYFQIPLGVLLLYPAFDAVREDWNESAALLGASSYQFWRYIGLPVLTPALLGTFVILLANALGAYATVYALTTGNFNVLPIRIAAMVAGDITLDPNMASALAMILVGLMTLVTVVHQWLLRRSYHVTR
>NZ_CP005969.1|WP_004408565.1|1697046_1697844_-|ABC-transporter-permease
MSRVERGPASIYHKTVVCLLFLILLLPLAGTFLYSIATSWSATILPSGLTFKWYVALWSDPRFLTAFGQSLLVCVGALILSVVLILPLLFVVHYYFPRLDGLMNILILLPFAVPPVVSSVGLLQLYGSGPMAMVGTPWILIGCYFTVALPFMYRAITNNLQAINLTDLMDAARLLGASTWQAAFMVVLPNLRKGLMIALLLSFSFLFGEFVFANLLVGTRYETLQVYLNNMRNSSGHFNSALVISYFLFVLVLTWAANRLNKDKD
>NZ_CP005969.1|WP_032656469.1|1696055_1697045_-|ABC-transporter-ATP-binding-protein
MSFVSIENLQKSYASTSVFSDINCSIAKGEFVTLLGPSGCGKSTLLRCIAGLTPVNSGRILLDGSNLVPLTPQKRNIGMVFQSYALFPNMTVEQNVAFGLRIQKVSADESTRRVAEILRMVELHDFATRYPHQLSGGQCQRVALARSLVTRPRLLLLDEPLSALDARIRKNLREQIRAIQRELGLTTIFVTHDQEEALTMSDRIFLMNQGRIVQSGDAETLYTAPVDVFAAGFIGNYNLLEADDATRLMQRPINSRVAIRPESIQLSLTGELEGEIRSHSLLGNVIRYRVQARGVKLVVDVLNRSADDLHPDGRRVTLNIEPSALCALD
>NZ_CP005969.1|WP_032656467.1|1695316_1695970_-|HAD-IB-family-hydrolase
MPLAIFDLDETLIGGDCATLWSEQMGRLGWVDSTSFMQRNDELMAAYSECKLAMEDYMAFSLEPMAGRTPEEIDHLVGPWVEDVIEPIIYSDACTCIAKHRAKGDRILVISASGVHLVKPIAERLGIDEVLGIELDVQHGVYSGATVGVLTYREGKITRLMEWLDAEGENLEGASFYSDSRNDLPLLLKVDHPNVVNPDAVLLEHAQKAGWPVHDWS
>NZ_CP005969.1|WP_024639958.1|1694334_1695297_+|NAD(P)H-quinone-oxidoreductase
MKALQGVEGHVEWVEEPSPALDVGQVRIKVAAAGLNRADLLQREGKYPPPPGVTQTLGLECSGVIAEVGPGSSWVVGDRVCALLAGGAMAEEVVVDGRHVLPVPEGLSLHEAAAIPEVYATAWLNLFELAGLKPGEKVLLHAGASGVGSAGIQLCKAFGNPVWVSVGSAERLAYCVELGAQGGVVRSESLEGLNDFAPFNVILDPVGASYAELNVKLLALDGRWVLIGVMSGREAKVDLAHVLGKRIRLMGSTLRSRDDTFKADLLSDLGQHVWPLFTEGRLKPQLAKSFAIKDAEAAFEELATNTVSGKIVLVINESLV
>NZ_CP005969.1|WP_011267128.1|1708135_1708771_-|RluA-family-pseudouridine-synthase
MPLSNIRIIHQDAAVLVIDKPTLLLSVPGRADDNKDCLITRLQENGYPEARIVHRLDWETSGIILLARDADTHRELSRQFHDRETEKAYTALCWGQPSLDSGSIDLPLRYDPPTKPRHVVDHEGGKHALTFWKVVERHDTYCRVELTPITGRSHQLRVHMLSIGHPLLGDGLYAHPEALAAYPRLCLHASMLSFTHPGTGERMTFECAAPF
>NZ_CP005969.1|WP_003317453.1|1708861_1709116_-|cell-division-topological-specificity-factor-MinE
MNIFDFFRDRKKGSTASVAKERLQIIVAHERGQRSTPDYLPALQKELVEVIRKYVNIESDQVQVALESQGSCSILELNITLPDR
>NZ_CP005969.1|WP_003317454.1|1709115_1709928_-|septum-site-determining-protein-MinD
MAKILVVTSGKGGVGKTTTSAAIGTGLALRGHKTVIVDFDVGLRNLDLIMGCERRVVYDFVNVVNGEANLQQALIKDKKIEGLFVLAASQTRDKEALTKEGVEKVLMELKESFEYIVCDSPAGIETGAHLAMYFADEAIVVTNPEVSSVRDSDRMLGLLASKSRRAERGEDPIKEHLLLTRYNPERVSKGEMLGVEDVKEILAVTLLGVIPESQAVLKASNQGVPVILDDQSDAGQAYSDAVDRLLGKTLEHRFLDVHKKGFFERLFGGN
>NZ_CP005969.1|WP_003368369.1|1710159_1710900_-|septum-site-determining-protein-MinC
MSQIESQNPEPVFQLKGSMLAITVMELARTNLEALDRQLAAKVAQAPNFFSNTPLILALDKLAPNEGPVDLPGLVRICRQHGLRTLAIRANRIEDIAAAIAVDLPVLPPSGARERVIDPVEAEAPKKIPEKPPEPLIKPTRVITAPVRGGQQIYAQGGDLVVVAPVSPGAELLADGNIHVYGPMRGRALAGIKGDTKARIFCQQLSAELISIAGQYKVSEDLRRDPLWGSPVQISLSGDVLNIIRL
>NZ_CP005969.1|WP_011267129.1|1711020_1711953_+|lipid-A-biosynthesis-lauroyl-acyltransferase
MDRPRLKASFLHPRFWPLWLGLGLLWLIVQLPFCVLLVIGRALGAIMYRVATDRKKIASRNLELCFPHLSAAERKRLLKENFASTGIAFFEMAMSWWWSKKRLARLAHVEGLEHLQNAQEKGEGVILMALHFTTLEIGAALLGQQHTIDGMYREHKSPLFDFVQRRGRERHNLDSLAVERDDVRGMLKLLRAGRAIWYAPDQDYGAKQSIFVPLFGIQAATVTATSKFARLGRAQVVPFTQRRLADGSGYRLVIHPPLDNFPGESDEADCLRINQWVEKAVTECPEQYLWAHRRFKSRPPGEPKLYNKHK
>NZ_CP005969.1|WP_004408362.1|1711985_1713170_+|patatin-like-phospholipase-family-protein
MPDPAVAINAVRSPVEPVTGLILSGGGARAAYQVGVLAGIADLLPAGAPNPFPVIVGTSAGAINAVKLASGALHFRIAIHQLTEFWQSFRSHQVLRSDWSGVIHQASRFFGRSLMGFGRNIPVALLNSSPLRELLNERLDLSGIEAAINAHHLRAVAVTAFGYESGQAVTFYQGRGTIEPWLRHRRIGRPTQLTVDHLLASSAIPLLFAPVMLDKEYFGDGAVRQSAPISPALHLGANRVLVVGVSGNPRGLKSERPAPRPPNGMQPSLAQISGHMLNSTFIDNLESDIELLERLNTASALLPDEQIRQPGMEPVEVLVISPSRPLDEIAARHRRELPPALRTFLRGPGATRSSGASVLSYLLFESGYCSELIELGRHDAIAQGAELKRFLRLT
>NZ_CP005969.1|WP_004408361.1|1713211_1713448_-|Rieske-2Fe-2S-domain-containing-protein
MNEPAEFRRPDTFTVHIGQEQYLIPSSCPHREGWLEHGVVNEKRRSITCPLHFSVFSLETGEQLSGPPCGQLQVRRVR
>NZ_CP005969.1|WP_011267130.1|1713431_1714289_-|iron-containing-redox-enzyme-family-protein
MEDLHKQLFLANRALIEKRVPMPQAILAFEQHWIEDAIERSMTADAPDDLAGLRRMLAELVEQESSEVPPSAQYVANDMTLDEFRILVQEFALDGLTEAQVFYHLMPRLSLPAQMPMLRMMIDEFGSGNLKRSHTTLYQDLLRELEMPLDLQFYVDANSSAGFTFPNMFCWLAMRADDASWFAGVITYFETVVPFFFECYTQLCERLQIKAHTYYSEHVHIDVFHAIEGQRLLKAMDVSGDLDPVKAWRGICMGREITNLAFDLAVEKARRLKHFNKEVSLERAC
>NZ_CP005969.1|WP_024651338.1|1714288_1715086_-|dihydrodipicolinate-synthase-family-protein
MSGKSILVPLITPLNAQEQVCEASLERLLGSLAPHVDGYIPCLTSGEGWRLSRQQWLQMLTLTLRHAGERSVIAGIERHSTQEVLDFALLAQDAGAQAVMFTSPLTPGISQQAIIEHYQTIHDATHMDIFMYNEAALSGNEKSFATLKAIAQLPRVIGLKDSPSLSRPQAQVDAIRQEGVDYFIGWEMQLAGDLESDGNVVSLANLEPLLCRTAAARQQPALSQEVATLNQRYLLNAPDWYAHIKRELKARGVINSERVVTEEAA
>NZ_CP005969.1|WP_011267132.1|1715075_1715594_-|hypothetical-protein
MSDFDLPMIDATVFMGMHHADPGVRDKSLEFFSRFYESSVQMNFAQIGICDAIIWKKGRALQDAYYPFMDVLHTDMAIQREGYSEQVLQRAAGETLFRGLPADKKLLAAQVLEQEIPFYTHDPELLRLQVLQPFLQPFENTIRRQTFPKMLQRLYDQSCAMVISNEDFQHVW

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Crispr_ID: NZ_CP005969_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP005969_5

2744189-2744433

Orphan

Consensus_repeat	Method
ACCTGATTTTCAGGGAAAACCGGACAAA	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP005969_5

>merge|NZ_CP005969|5|2744189-2744433|CRISPRCasFinder
ACCTGATTTTCAGGGAAAACCGGACAAACTAAATTGAGAAAAGCTTCTCCTACACATACTAGACCTGATTTTTAGGGAAAACCGGACAAATTATTTTCACATGCCGTAAAGTCATTATTTGCTGGGGTGTACTCACAGTCTATATAATACTAGACCTCGTTTTGAGAGAATTCCCCTCAAACTAATTGAGATATTTTTCACACTCACATATACCTATACCTAAATTTCAGGCAAAAGTCCTCAAA

>NZ_CP005969|5|5|2744189-2744433|CRISPRCasFinder
ACCTGATTTTCAGGGAAAACCGGACAAA	CTAAATTGAGAAAAGCTTCTCCTACACATACTAG
ACCTGATTTTTAGGGAAAACCGGACAAA	TTATTTTCACATGCCGTAAAGTCATTATTTGCTGGGGTGTACTCACAGTCTATATAATACTAG
ACCTCGTTTTGAGAGAATTCCCCTCAAA	CTAATTGAGATATTTTTCACACTCACATATACCTAT
ACCTAAATTTCAGGCAAAAGTCCTCAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP005969.1\|WP_032653593.1\|2753650_2755132_-\|xylulokinase	unknown	unknown	gnl\|CDD\|198375
NZ_CP005969.1\|WP_032653602.1\|2743276_2743705_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005969.1\|WP_011267670.1\|2736129_2736825_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239109
NZ_CP005969.1\|WP_024641984.1\|2746948_2747347_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240025
NZ_CP005969.1\|WP_032653598.1\|2748972_2751882_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP005969.1\|WP_148279791.1\|2740933_2741158_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005969.1\|WP_024641988.1\|2737503_2737740_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340501
NZ_CP005969.1\|WP_032653604.1\|2743010_2743280_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005969.1\|WP_032607570.1\|2738019_2738547_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP005969.1\|WP_032653589.1\|2755142_2756624_-\|mannitol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223324
NZ_CP005969.1\|WP_024641985.1\|2745797_2746859_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187652
NZ_CP005969.1\|WP_024660155.1\|2735726_2735909_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005969.1\|WP_003369324.1\|2752050_2752605_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005969.1\|WP_032653610.1\|2741204_2742659_-\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|214692
NZ_CP005969.1\|WP_024651457.1\|2738576_2738801_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005969.1\|WP_024641983.1\|2747650_2748727_-\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176186
NZ_CP005969.1\|WP_080267605.1\|2743727_2743997_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005969.1\|WP_032653600.1\|2744584_2745541_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271177
NZ_CP005969.1\|WP_046722249.1\|2756641_2757715_-\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|236947
NZ_CP005969.1\|WP_032653596.1\|2752689_2753628_-\|carbohydrate-kinase	unknown	unknown	gnl\|CDD\|238572

Protein	Function_ID	Function_description	E-value
NZ_CP005969.1\|WP_032653593.1\|2753650_2755132_-\|xylulokinase	gnl\|CDD\|198375	cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases. This subgroup is composed of D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17) from bacteria and eukaryota. They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases.	0
NZ_CP005969.1\|WP_011267670.1\|2736129_2736825_+\|hypothetical-protein	gnl\|CDD\|239109	cd02549, Peptidase_C39A, A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are lacking the nucleotide-binding transporter signature or have different domain architectures.	2.51638e-28
NZ_CP005969.1\|WP_024641984.1\|2746948_2747347_-\|NUDIX-domain-containing-protein	gnl\|CDD\|240025	cd04667, Nudix_Hydrolase_10, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	5.84372e-58
NZ_CP005969.1\|WP_032653598.1\|2748972_2751882_+\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	3.48035e-84
NZ_CP005969.1\|WP_024641988.1\|2737503_2737740_-\|hypothetical-protein	gnl\|CDD\|340501	cd01803, Ubl_ubiquitin, ubiquitin-like (Ubl) domain found in ubiquitin. Ubiquitin is a protein modifier in eukaryotes that is involved in various cellular processes, including transcriptional regulation, cell cycle control, and DNA repair. Ubiquitination is comprised of a cascade of E1, E2 and E3 enzymes that results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. Ubiquitin-like (Ubl) proteins have similar ubiquitin beta-grasp fold and attach to other proteins in a Ubl manner but with biochemically distinct roles. Ubiquitin (Ub)and Ubl proteins conjugate and deconjugate via ligases and peptidases to covalently modify target polypeptides. Ub includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains.	3.96584e-30
NZ_CP005969.1\|WP_046722249.1\|2756641_2757715_-\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	0
NZ_CP005969.1\|WP_032607570.1\|2738019_2738547_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	1.08282e-20
NZ_CP005969.1\|WP_032653589.1\|2755142_2756624_-\|mannitol-dehydrogenase-family-protein	gnl\|CDD\|223324	COG0246, MtlD, Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism].	0
NZ_CP005969.1\|WP_024641985.1\|2745797_2746859_-\|SDR-family-oxidoreductase	gnl\|CDD\|187652	cd08948, 5beta-POR_like_SDR_a, progesterone 5-beta-reductase-like proteins (5beta-POR), atypical (a) SDRs. 5beta-POR catalyzes the reduction of progesterone to 5beta-pregnane-3,20-dione in Digitalis plants. This subgroup of atypical-extended SDRs, shares the structure of an extended SDR, but has a different glycine-rich nucleotide binding motif (GXXGXXG) and lacks the YXXXK active site motif of classical and extended SDRs. Tyr-179 and Lys 147 are present in the active site, but not in the usual SDR configuration. Given these differences, it has been proposed that this subfamily represents a new SDR class. Other atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.13882e-129
NZ_CP005969.1\|WP_032653596.1\|2752689_2753628_-\|carbohydrate-kinase	gnl\|CDD\|238572	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.	5.87497e-92
NZ_CP005969.1\|WP_032653610.1\|2741204_2742659_-\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|214692	smart00487, DEXDc, DEAD-like helicases superfamily.	0.00100622
NZ_CP005969.1\|WP_024641983.1\|2747650_2748727_-\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NZ_CP005969.1\|WP_032653600.1\|2744584_2745541_-\|site-specific-integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	7.46146e-27

>NZ_CP005969.1|WP_080267605.1|2743727_2743997_-|hypothetical-protein
MSITLEQIVALQHNQLNTLPRKIIWLMVRNQADVFGWSTISSADFCIATGLPRRSVEGVLKHLVATAMVERRKTGKAHSARYQYRIITL
>NZ_CP005969.1|WP_032653602.1|2743276_2743705_-|hypothetical-protein
MRTYKHEDLVALAQETGRSLEEVKQVAHNSGWVLEQEARPLRALDSSKDAVAIMKQVKQATLERLYNNDPLIRESLDTQVAVQQARLDRTTNKPSNNQYDSEGNFTGVTRSIISGPAATGKNQTDAMKAIKASVYKRLGVQE
>NZ_CP005969.1|WP_032653604.1|2743010_2743280_-|hypothetical-protein
MNYYISEGERQYQEHRKAQLKAMIEQAEVSNNSLVGEVKTYKGVSYQMHQRGSYVCVGLPKNSPLEGTFTSAFALHKIIDDLEIRKPIK
>NZ_CP005969.1|WP_032653610.1|2741204_2742659_-|DEAD/DEAH-box-helicase-family-protein
MKEKKLFIAEALPGSGKSTKFIECLPELIHNSKIVYAMPTNALISELALQIRTRAGFTPVVITSDTVDHVIAHVEKALAARSQPLIMITHEALRRVDARLLAGWELVVDEVPSVSDCKGYQFDSISYLGSLGNYLTVDAEKKAALKPENIALIENIIKAKDNSALSDSALDVLKAMLTPKCSVEVEAQTDKGKRLVRIVSYRDFLPAFSSANSVHVLANNVQDTLLGIHATYQGWQFEPSIFTPEFDGYGKRVELHPFLTGKYSKTQSMMQRNGKPADAWDDGVQLADWLNCVTVMVGDEKGLAFAHQWMKYNFSDAITKLPIDSRGINGYQDRHIAICLQHGNVSPDDALSFHTLGEMLGVPVQEVRKAIEFERFYESTLQAVARTSLRDRSSTEPVTLFVQNMSMALYLQSKLGRLATINTELVMTPWEKEQSDKKKDKALLQAQAISLLIEKGMTRQDIANDLCIPYPTIKRWTKGLEQAA
>NZ_CP005969.1|WP_148279791.1|2740933_2741158_+|hypothetical-protein
MTAEARARHVVAYAIKKDQEQYILVGSPLLILSFMRALVSYADVAFAFKEGPSIDGSLRMVSSLVIKSLKIKIP
>NZ_CP005969.1|WP_024651457.1|2738576_2738801_-|hypothetical-protein
MDDEVSALVVDNGSGSVQSNNESKSASADGAAITNRYARVGSDGIVIIIKNIPGPPPTPDWKPCKADTKEGLKY
>NZ_CP005969.1|WP_032607570.1|2738019_2738547_-|GNAT-family-N-acetyltransferase
MYSERLLIRVAKPGDGIVFNQAVAESAEHLQKWLAWATPTPGIDQSELICRHAYARFLLNEDLRALLFLKNNGALVGSSGLHNANWQLRSFEVGYWGRTQYLGAGLISEGVAALVSYALDNLMANRVFLTMDERNLASQRLAERVGFEYEGTLRQDRMSIQGGLRNTRLYSIIGT
>NZ_CP005969.1|WP_024641988.1|2737503_2737740_-|hypothetical-protein
MIIYIKTLLGEKFDLNVESSDLISNVKAKIEDKTETPIQRQRLIFAGRQLEDERTLADYNIQKESTLQLVLKLGVGPL
>NZ_CP005969.1|WP_011267670.1|2736129_2736825_+|hypothetical-protein
MLSVSFFTGTSGALRSWLIGAMLIGLAGCSSMVTPEMKRLPDRVELTSVPFFRGNAYQSGPMVLASMLANQQVQTTPGLLDKPLQLPGAEDRLEQNMQKVAREYGFMVYPLDGQLQDLLTQVSAGYPVMLRFAQGSVLWKGPRYAVLIGYNRIKETVLLNAGMNRRYSMSFSSFASAWKDAGSWAVLIQSPRQLPANVDAQRWLQAAEALSTSGQEQAAGEAKRTLARGVK
>NZ_CP005969.1|WP_024660155.1|2735726_2735909_-|hypothetical-protein
MSLELTIVMLIASWLAVASAMLWGVMRISRRHHQPRSVEPRAVQTAVLAKHIKAPAVAAN
>NZ_CP005969.1|WP_032653600.1|2744584_2745541_-|site-specific-integrase
MANIRSLPSGNWNAQVRLKGKPPQSKTFATQAEAQAWADKLEAVIKDHKHHTIFTLGMTYCDSHLKGKGSYTHAVQIVEQLAHAFPQSIHDITPKFVNDFKLMRLQTVKAATCRHQLAFLSRFFKYAKRGLLIDIPNPVCDITLPKPDKSSDKVVTAGELRLILNELSPTMALIAELAYETAMRRSEILKLTVNCLHLGQRIVDVVDGKNGTRSVPLTLRAIELLEEAQRLAIAERIQRGRLFSVAPHSVSQAIRRARTAANLDSNVRLHQLRHTRITNVAKRGFNNAQIMIVSGHRDTRSVARYSHLNAKDVLHLID
>NZ_CP005969.1|WP_024641985.1|2745797_2746859_-|SDR-family-oxidoreductase
MTQTALVVGASGIVGSAITQLLLENDWQVAALSRSPSARPGVIPVAADLQNPDSVRAALADVKPTHVFITTWSRQATEAENIRVNAAMVRNVLDAVRPAGSVKHVALVTGLKHYLGPFEAYGKGTLPQTPFRESQARLDIENFYYAQEDEVFAAAEKDGFTWSVHRPHTVTGVAVGNAMNMATTLAVYASICKATGRPFVFPGSRVQWDSLTDMTDARQLARQQLWAATTPAAANQAFNITNGDVFRWSWMWGQIAEYFGLQPADFPSEPAPLETQMANDQAIWDDIVREHQLKESDINRLISPWHSDADLGRPIEVVTDMSKSRKLGFTAFQASDDAFFDVFEKLRRDRLIP
>NZ_CP005969.1|WP_024641984.1|2746948_2747347_-|NUDIX-domain-containing-protein
MKQRATVICKRDGQVLYVRKPKSRWALPGGKIEAGETPFQAAVRELCEETGLTDLNLLYLDVYEKDQVTHYVFTTQVPASSDPSPQNEIAACKWLAPQKLDDLKASSATKTIVKSYANQPEDVSGSRSHVTG
>NZ_CP005969.1|WP_024641983.1|2747650_2748727_-|NAD(P)-dependent-alcohol-dehydrogenase
MVKTYSYAAQSAQDTLKPHQFERRSPGADDVQIDILYCGVCHSDLHTARNEWHNTLYPSVPGHEIVGRVTAVGSDVKQFKVGDLAGVGCMVDSCQQCASCAEGDEQYCESGFTGTYNGPVFGGENTFGGYSDKIVVKEKFVLRISHDANLAAVAPLLCAGITTYSPLRHWKVGPGKKVGIVGLGGLGHMGVKIAHAMGAHVVLFTTSPDKREDGLRLGADEVVVSRDAGQMAAQANSLDFILNTVAAPHDLDAFLSLLKRDGTMTLVGAPAEPHPSPAVFNLIFKRRSLAGSLIGGIQETQEMLDFCAEHGIVSDIEVIAMQDINEAYERMLKGDVKYRFVIDMDSLKQEAAADSNAA
>NZ_CP005969.1|WP_032653598.1|2748972_2751882_+|EAL-domain-containing-protein
MHLDASMTVSLLATGLCPSVACTSIAPGSALPATRDRFSCHASIEALISAARQQTGAIAWAAYAAGELKCLLGQGDESVVWPTHIAAEDFEAYCTQLQLHCRVAGQGEGVLGWVLAPMAEKDHPLLLDLAVRLGSLLQTAALIRAQNTQRVLYEISLLASTTLDRGAFLQGIHEQLGTLIDAENFYVALYDRQSGKITYPYYIDRFDDEAMAHETFEFIDADRMSLTGYVLSSGQPLFLDAACIELAKAENRFYCVGRLPEFWMGAPLKNASDDVFGMVAMQVYDVSRVYSAQDRALFAVVSRHVAMALDRQLHRTDLEQVVALRTQQLSAANDALRQEVRDRERAEHLQNALFQIAELSSQPGDMNELFRSLHMIVGELLVALNFYIALYDSATGEVTFPYYIDEFKPAPPRSRRGQRGFTEYVIGQRRPCLIDYEEARRLEGLGEIEVQRQSGRCSSWLGIPLFDGGQVRGVLVVQSYSRDVSYTLRDQELLTFVSRHIDTALSRRSAAEAIHTANVLLEARVRDRTRELDQANARLQHENSHDSLTGLPNRSHLQHRLRQAWQDFCRNGQQVIVMFIDLDRFKMINDSLGHHCGDILLVQAAERLRSCMRERDLLARLGGDEFAVLSIDTPLQTGTEIAQRILTAFEQPFVIDDHTVFSSCSIGVVGADSCFHQEPADLLRDADTAMYRVKNGGRDSFAVFNQALRREVSDQVEQEGALRTALKRTDQLIPYFQPVICVNSGKLLAFEALIRWRMPDGRIVGPESFLPALEGLRLIGRLDLYMLRRVVSILAQPENSHWPPVHVNCSSYSITRPAFAAEVLALLAEQNVAPERLCLELTEGALVADPEQARLSMKLLAEHGMSVMLDDFGAGFSSLSYVHQYHFSGLKIDKSFIFGLTSSVRSRAIVRAIVRMAESLDLTVVAEGVEDRETLELLREIGATQAQGYYFSEPLPIELLDINTGLAAG
>NZ_CP005969.1|WP_003369324.1|2752050_2752605_+|hypothetical-protein
MIIGTSALEQLVSRAVVGRKTVDEVSQDAFSSVAAAGLTSGSAPVTAQTSSSTSQDSKQDNSGYNESFARMMINLKSAGDTSLSEKTADRDNGVIGSVAGTTSTTDTASTDSVQQKFMDSLKQTAEEKVREKLTGITQKDYDAMAPQDQLAIDQKVQDALKDKQNDVADDINTRIRGIKAGMVA
>NZ_CP005969.1|WP_032653596.1|2752689_2753628_-|carbohydrate-kinase
MFLVCGEALFDIFTRADDSGSLNRLGFDAIAGGSPFNVAIGLRRLGVEASFLAGLSTDYLGRRLRAVLEKETVNTDHLIDFDAPTTLAMVAVGSDGSPTYSFRGEGCADRQLRLEHLPELDGQVRGIHVGSFSLVVQPIADTLLALVARESSTRLISLDPNVRLNPAPDIQRWRSQVAAFAEHAHLIKVSDEDLHLLYPDSDPQKIAEGWLGKRTQLVIVTRGTQGASVFTRQHGTWSAPAKTVVTADTVGAGDTFQAALLTFLSERQLDTPEGLATLSRELLDEMLSFAVGAAALTCTKVGPDLPYRHQLG
>NZ_CP005969.1|WP_032653593.1|2753650_2755132_-|xylulokinase
MFLGIDCGTQGTKVLVLDTESGTVLGEGSAPHSLISDHNGRREQDVQQWLDALQQATREALAAAGVSGQQIQGIGVSGQQHGLVLLDAQGQVLRPAKLWCDTESAPENQRLLDFLGGAQGSLQRLGLVIAPGYTVSKLLWTKEQYPDLFERIDKVLLPHDYLNYWLTGRCCTEFGDASGTGYFNVRTREWDLPLLAHIDPSGRLGKALPQLLQAHEPVGALRAEVARLLGLNPDALVSSGGGDNMMGAIGTGNIQPGLITMSLGSSGTVYAYADEAQVSEHESVATFCSSSGGWLPLICTMNLTNATTAIRELFALDIGGFNQVVAQAPIGAEGVLMLPFLNGERVPALPDATGSIVGLDSTNLTQANLSRAVVEGTTFGLRYGLDLLRDSGIKSEKIRLIGGGSKSAVWRQIVADIMNTPVICTDHSEAAALGAAIQAAWCWSRANGKAQDLQQLCERCVSLDQSSETHPVVHNVAAYQQVYQGYQAQLRKV
>NZ_CP005969.1|WP_032653589.1|2755142_2756624_-|mannitol-dehydrogenase-family-protein
MKLNKNNLSRLGDDIAVPAYTVESTRQGIAHIGVGGFHRAHQAFYTDALMNSGEGFEWSICGVGLRPEDKAVRDALAQQDYLYTLYELGDTPDTKTRIIASISGMLLADDSPQALIDKLASPDIRIVSLTITEGGYCIDDSNGQFMAHLPQIQHDLANPDQPKTVFGFLCAALARRRAQGTPAFTLMSCDNLPHNGAVTRKALLAFATLRDADLHDWIKENVSFPNAMVDRITPMTSAPHRLQLADEKHIDDAWPVVCEPFVQWVLEDKFVNGRPAWEKVGVQFTDDVTPYEEMKIKLLNGSHLALTYLGFLKGYRFVHETMNDPLFVSYIRTYMDLDVTPQLASVPGIDLEGYKDTLIERFSNQAIADQLERVCSDGSSKFPKFTIPTINRLIVDQGNLERASLVVAAWALYLKGVDENGTTYTIPDPRAGFCQALVADDTLITQRLLAVEEIFGSAIPKSAAFMAAFEQNLNDLRTLGVSGTLEKLLAAKA
>NZ_CP005969.1|WP_046722249.1|2756641_2757715_-|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC
MANLSIRNLQKGFDGHQIIKGIDLEVKDREFVVFVGPSGCGKSTLLRLIAGLEEVTSGTIELDGRDITQVTPAKRDLAMVFQTYALYPHMTVGKNLSFALDLAGGDKAEIKKKVDEAARILELGPLLERKPKQLSGGQRQRVAIGRAIVRNPKIFLFDEPLSNLDAALRVQTRLELSRLHKELQATMIYVTHDQVEAMTLADKVVVLNGGKVEQVGSPLELYHHPANLFVAGFLGTPKMGFLKGTISRVDSASCEVELDAGTRISLPVNGAGQSVGAAVTLGIRPEHLNLADVSERLGSDTYCHVRTRSGEALTMRIRGDLASQYGETLNLYLDSAQCHLFDAQGLVIAKALQTAAA

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Crispr_ID: NZ_CP005969_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP005969_6

4000651-4000761

Orphan

Consensus_repeat	Method
TGACTATCGTTCCTCACGCTCCGCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP005969_6

>merge|NZ_CP005969|6|4000651-4000761|CRISPRCasFinder
TGACTATCGTTCCTCACGCTCCGCGTTTCTGCGTTGTCAGTGCCATCGTGTTCGAAAAGCATTTCGGTGGTAGTTAATGCGATTTTGACTATCGTTCCTCACGCTCCGCGT

>NZ_CP005969|6|6|4000651-4000761|CRISPRCasFinder
TGACTATCGTTCCTCACGCTCCGCGT	TTCTGCGTTGTCAGTGCCATCGTGTTCGAAAAGCATTTCGGTGGTAGTTAATGCGATTT
TGACTATCGTTCCTCACGCTCCGCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP005969.1\|WP_032654997.1\|3995471_3995924_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|179596
NZ_CP005969.1\|WP_024640410.1\|4001912_4002911_+\|sulfate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224529
NZ_CP005969.1\|WP_032654995.1\|3991411_3992017_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005969.1\|WP_024659630.1\|4003389_4004589_-\|c-type-cytochrome-biogenesis-protein-CcmI	unknown	unknown	gnl\|CDD\|226687
NZ_CP005969.1\|WP_004407375.1\|3992187_3992877_+\|heavy-metal-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|130454
NZ_CP005969.1\|WP_032655001.1\|4005585_4007559_-\|heme-lyase-CcmF/NrfE-family-subunit	unknown	unknown	gnl\|CDD\|224061
NZ_CP005969.1\|WP_024659628.1\|4005052_4005589_-\|DsbE-family-thiol:disulfide-interchange-protein	unknown	unknown	gnl\|CDD\|239308
NZ_CP005969.1\|WP_003316888.1\|4002970_4003378_-\|lipoprotein	unknown	unknown	gnl\|CDD\|237871
NZ_CP005969.1\|WP_004417065.1\|4007562_4008030_-\|cytochrome-c-maturation-protein-CcmE	unknown	unknown	gnl\|CDD\|237317
NZ_CP005969.1\|WP_024659775.1\|3998004_3998214_+\|DUF1656-domain-containing-protein	unknown	unknown	gnl\|CDD\|377931
NZ_CP005969.1\|WP_011268396.1\|3994263_3994932_-\|polysaccharide-lyase-family-7-protein	unknown	unknown	gnl\|CDD\|378049
NZ_CP005969.1\|WP_004407383.1\|3995920_3998008_+\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|377393
NZ_CP005969.1\|WP_024659774.1\|3998210_3999095_+\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482
NZ_CP005969.1\|WP_004408171.1\|4008199_4009003_-\|heme-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|273492
NZ_CP005969.1\|WP_011268393.1\|3990716_3991337_-\|cytochrome-b/b6-domain-containing-protein	unknown	unknown	gnl\|CDD\|226602
NZ_CP005969.1\|WP_004408189.1\|4000975_4001809_+\|ion-transporter	unknown	unknown	gnl\|CDD\|366146
NZ_CP005969.1\|WP_024659773.1\|3999091_4000525_+\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830
NZ_CP005969.1\|WP_004407377.1\|3992855_3994244_+\|heavy-metal-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|273593
NZ_CP005969.1\|WP_024659629.1\|4004585_4005056_-\|cytochrome-c-type-biogenesis-protein-CcmH	unknown	unknown	gnl\|CDD\|377161
NZ_CP005969.1\|WP_011268404.1\|4008026_4008203_-\|heme-exporter-protein-CcmD	unknown	unknown	gnl\|CDD\|225656

Protein	Function_ID	Function_description	E-value
NZ_CP005969.1\|WP_032654997.1\|3995471_3995924_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|179596	PRK03573, PRK03573, transcriptional regulator SlyA; Provisional.	7.8533e-14
NZ_CP005969.1\|WP_024640410.1\|4001912_4002911_+\|sulfate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224529	COG1613, Sbp, ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism].	0
NZ_CP005969.1\|WP_004408171.1\|4008199_4009003_-\|heme-ABC-transporter-permease	gnl\|CDD\|273492	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC. This model describes the cyt c biogenesis protein encoded by ccmC in bacteria. It must be noted an arabidopsis, a tritcum and a piscum plant proteins were recognizable in the clade. Quite likely they are of organellar origin. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes, ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in the heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other].	5.42087e-90
NZ_CP005969.1\|WP_024659630.1\|4003389_4004589_-\|c-type-cytochrome-biogenesis-protein-CcmI	gnl\|CDD\|226687	COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones].	4.1003e-59
NZ_CP005969.1\|WP_004407375.1\|3992187_3992877_+\|heavy-metal-response-regulator-transcription-factor	gnl\|CDD\|130454	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator. Members of this family contain a response regulator receiver domain (pfam00072) and an associated transcriptional regulatory region (pfam00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system. [Regulatory functions, DNA interactions].	3.4144e-106
NZ_CP005969.1\|WP_032655001.1\|4005585_4007559_-\|heme-lyase-CcmF/NrfE-family-subunit	gnl\|CDD\|224061	COG1138, CcmF, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP005969.1\|WP_024659628.1\|4005052_4005589_-\|DsbE-family-thiol:disulfide-interchange-protein	gnl\|CDD\|239308	cd03010, TlpA_like_DsbE, TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.	1.65498e-67
NZ_CP005969.1\|WP_003316888.1\|4002970_4003378_-\|lipoprotein	gnl\|CDD\|237871	PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional.	0.00718044
NZ_CP005969.1\|WP_004417065.1\|4007562_4008030_-\|cytochrome-c-maturation-protein-CcmE	gnl\|CDD\|237317	PRK13254, PRK13254, cytochrome c maturation protein CcmE.	3.41411e-81
NZ_CP005969.1\|WP_024659775.1\|3998004_3998214_+\|DUF1656-domain-containing-protein	gnl\|CDD\|377931	pfam07869, DUF1656, Protein of unknown function (DUF1656). This family contains bacterial proteins, many of which are hypothetical. Some proteins in this family are putative membrane proteins.	1.85335e-11
NZ_CP005969.1\|WP_011268396.1\|3994263_3994932_-\|polysaccharide-lyase-family-7-protein	gnl\|CDD\|378049	pfam08787, Alginate_lyase2, Alginate lyase. Alginate lyases are enzymes that degrade the linear polysaccharide alignate. They cleave the glycosidic linkage of alignate through a beta-elimination reaction. This family forms an all beta fold and is different to all alpha fold of pfam05426.	7.60161e-73
NZ_CP005969.1\|WP_004407383.1\|3995920_3998008_+\|FUSC-family-protein	gnl\|CDD\|377393	pfam04632, FUSC, Fusaric acid resistance protein family. This family includes a conserved region found in two proteins associated with fusaric acid resistance, FusC from Burkholderia cepacia and fdt-2 from Klebsiella oxytoca. These proteins are likely to be membrane transporter proteins.	1.1245e-173
NZ_CP005969.1\|WP_024659774.1\|3998210_3999095_+\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	1.6926e-74
NZ_CP005969.1\|WP_011268393.1\|3990716_3991337_-\|cytochrome-b/b6-domain-containing-protein	gnl\|CDD\|226602	COG4117, COG4117, Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) [Energy production and conversion].	1.14551e-55
NZ_CP005969.1\|WP_004408189.1\|4000975_4001809_+\|ion-transporter	gnl\|CDD\|366146	pfam00520, Ion_trans, Ion transport protein. This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.	2.25942e-22
NZ_CP005969.1\|WP_024659773.1\|3999091_4000525_+\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	1.6251e-66
NZ_CP005969.1\|WP_004407377.1\|3992855_3994244_+\|heavy-metal-sensor-histidine-kinase	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	6.7627e-139
NZ_CP005969.1\|WP_024659629.1\|4004585_4005056_-\|cytochrome-c-type-biogenesis-protein-CcmH	gnl\|CDD\|377161	pfam03918, CcmH, Cytochrome C biogenesis protein. Members of this family include NrfF, CcmH, CycL, Ccl2.	2.713e-73
NZ_CP005969.1\|WP_011268404.1\|4008026_4008203_-\|heme-exporter-protein-CcmD	gnl\|CDD\|225656	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion].	5.09639e-16

>NZ_CP005969.1|WP_024659773.1|3999091_4000525_+|efflux-transporter-outer-membrane-subunit
MKRALRVAALGFTTVLSACQMVGPDYQVPKDGAINRPDLQGELAGRSVNTVSAPVPAHWWRLYQDARLDELVRQAIASNTDLRIAAANLQRARYQTSEAEAAGGFTNGAKIGAQRVQESGEAFLLTDKVPVANVGDVGLTTSYQFDLFGTLQRGIEAAQANVDANQAAVDTARITVVADVVRAYTQICAANEELDIARASLDLQQQSVTLNQRLRDAGRGDETQVTRSQTQFKSLRAEMPRYEARRQAAIFRLSMLLAKPVEQLPAGVSTCNQLPQIAQVMPVGDGAALLKRRPDVRQAERHLAMSTAEIGVATGELYPDISIGASIGTTGLIENLGKPAANRWGFGPLLNWTIPSNGSRARIHQAEASAQAALARFDGVVLNAIRETQTGLAQYTALLDRRDALKEAEQSAREAADQTHRFYQAGRASFLADLQATRTYTDVRAQMAEANTQVAMGQINLFLALGGGWEKDDVAQK
>NZ_CP005969.1|WP_024659774.1|3998210_3999095_+|HlyD-family-secretion-protein
MKKPILTLGRVVLTLLVVTLAAVVVWRMVMYYMYAPWTRDGHIRADVVQIAPDVSGLIQKVEVTDNQPVHKGQILFTIDQDRFRLALRQAQATVAERQETWEQARRENKRNRGLGNLVAREQLEESQSREARALSALGEAKVAVDAAQLNLDRSVIRSPVDGYLNDRAPREHEFVTAGRPVLSVVDSTSFHIDGYFEETKLDGIHVGQGVDIRVIGDTARLTGHVVSIVAGIEDRDRSSGSNLLPNVNPAFSWVRLAQRIPVRIAFDDVPADFRMIAGRTATVSIIDDTQERSR
>NZ_CP005969.1|WP_024659775.1|3998004_3998214_+|DUF1656-domain-containing-protein
MIGDLDISGIFIPTFLAMMGIAYLLFLVAHAVLSRAHFYRLVWHRALFNVGLYALLLGAVDTLSRYLMT
>NZ_CP005969.1|WP_004407383.1|3995920_3998008_+|FUSC-family-protein
MNGFFSSVPPARDWFYGVRTFGASMLALYIALLMEMPRPYWAMATVYIVSSPFVGPTSSKALYRAAGTLAGAAASVVLVPMFVQTPLLLAIVVGLWTGTLLFLSLHLRTANSYALMLAGYTMPLISLPVVDNPQAVFDIAVSRTEEIFLGIICAAVVGAMFWPRRLAPVFQATTEKWFSDAATYSQRFISRTCQPEEIGTLRNSMVGSFNSLEMMIGQLSHEGARKQTVRNANELRGRMIHLLPVIDALDDALWALERRTPELLASVRPLLHKTCDWLESTADGPQVEQWQQLHRDLQSLQPDSAQLDDRDQLLLSNTLFRLGEWIDLWLDCRTLQYAIKTDDQSQWRAVYRHWRLGRLTPFLDRGLMLYSVTSTVLAIIAASVLWILLGWKDGASAVALAAVSCSFFAAMDDPAPQIYRFFFWTLLSVVFASLYLFVVLPNLHDFPMLVLAFAVPFICVGTLTVQPRFFLGTLLTIVNTSSFISIQSAYDADFMNFLNANLAGPVGLLFAFIWTLVFRPFGVELAVKRLTRFSWRDIASLSENASLAEHRRMGVQMLDRLMQQLPRLTLTAQDTGIALRELRVALNMLDLLAYTRRATPAAQVLLRQVIDEVSGYFKLCRKAGERLPAPRGLLMAMDRARRSLTDQEMGDNPARLHLLHALSGLRLALLPGVEIVTVGGELTEQLPHNIDGAPL
>NZ_CP005969.1|WP_032654997.1|3995471_3995924_+|MarR-family-transcriptional-regulator
MSVEALHRTISSGLVAASRQWRRICQNTLVTYGISEACAGPLLAIACLGDGAHQVKVAQAAGMESPTLVRLLDQLCKADIVCRTEDPNDRRAKALSLTRKGRELACSIEAELTRLRAEVLQGLQPADLEATLRVLQAFADAAQREHGGQA
>NZ_CP005969.1|WP_011268396.1|3994263_3994932_-|polysaccharide-lyase-family-7-protein
MIDLATWNLSVPVGSPATIIETPKLVKGYRDGYFQSGDTLFFWAPVTGSTTENAKYPRSELRETTSDGRVFNWAYSSADNFLRATLEVDQVPSSGKIVIGQIHCYQSTEPLLKVEYQYKEKLQTGNIVAKFRRTPDSEIEVINIAQGVPLNKQFNYTINLSPSGDLTVNAFDAVWYAKLDSAWASKLFYFKAGVYTQDNTGYTTEGGSATFYKLAIAHEKKN
>NZ_CP005969.1|WP_004407377.1|3992855_3994244_+|heavy-metal-sensor-histidine-kinase
MRRQPSLTLRSTLAFALVAMLTVSGAGLYLYQSIEETVMQRSDHAVLARLDHFRKLLRYDLTMDNLKGSPQLFENMLDSEEDIFIIGEPGKSPVISVNPQHAPLPELPTVAQDQPLRVDDLRSGMSLQGVPLRAAAVQVMSNGVEVRLQAAHLMVKEMAMLASFRQRIYIAVALAFLITAALGYVLLRRGLRPLRRMAAHAAAITPASLHKRLDSRDTPVELQQLSDAFNAMLDRLDDGYRRLMQFSADLAHEIRTPVGSLMGHCQVALRQNRSADEYQALLASNLEELERISRLVESILFLARADEAQAALERQALDMHDELQRVAGYFEGLAEERNLTLSTHGQGTLLADPILLRRALSNLVANAIRYADEDSEILMRVTAVDRHWKIDVENQGPVLPEATLARLFDRFYRGDASRHERSDSNGLGLAIVTAIMQLHGGRVEVAQPAVGRICFSLIFPAA
>NZ_CP005969.1|WP_004407375.1|3992187_3992877_+|heavy-metal-response-regulator-transcription-factor
MHILLIEDDTKTGEYLKKGLGESGYVVDWTQHGADGLHLALENRYDLIVLDVMLPGIDGWQIIEVLRARQDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGVVREADHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVLSRAQIASEVWDMNFDSDTNVVDVAIKRLRSKVDLPYPVKLIHTVRGIGYVCEVRPCDASLP
>NZ_CP005969.1|WP_032654995.1|3991411_3992017_-|hypothetical-protein
MKTALSTTFGLLLLSAAVMTQAADMKVVKPMRGTVDSVSADTLDFTTRSGQHESIKLTDKTGIRLVSEADFKQIKDGSFVGSAAKPKSDGTLEALEVTVFEASLKGSGEGHYGWQNADGSTGTMTNGTVGTLADTNGRTLIVKYEGGVKKLVVPQDVPVAYVEPGKVDQLTKGAKVVVFPADDGKSARGVAVGKDGFTPPM
>NZ_CP005969.1|WP_011268393.1|3990716_3991337_-|cytochrome-b/b6-domain-containing-protein
MKTRPIHPWPVRLTHWVNAVGMVCMFMSGWAIYNASPLMPFTFPKFLTLGGWLGGSIAWHFAVMWLLVINGLIYVLYGVFSRHFKRDLLPVRPSEVTRDMNDALHFRLVHVKGRYNAVQRLMYWLVLAMGVLVVLSGLAIWKPVQFQGLVSLLGGFDFARWVHFGAMTAIGAFVIVHLLLVVLVPSTLLPMITGGRQPNEDGTAQS
>NZ_CP005969.1|WP_004408189.1|4000975_4001809_+|ion-transporter
MDSSLSRRERLHIVIFEANTPAGRMFDKAVLVAILLSLLVTIIDSIESIHRDYAMLFAWIEWGFTLMFAIEYMLRLYCSPRPLKYAFSFYGLVDLLAIVPGVLSIYYSDAQYLLIVRIIRMLRIFRVLKLGTYLRQANYLLAALRGSKQKIIVFLVTVSTLVTVFGTLMYVIEGPEHGFTSIPKGIYWAIVTLTTVGFGDIVPKTPLGQMLSSLVMITGYSIIAVPTGIFTAELANAMRGEQLKHDCPVCSKNLHEHGAAFCSRCGNQLFTKTEHKA
>NZ_CP005969.1|WP_024640410.1|4001912_4002911_+|sulfate-ABC-transporter-substrate-binding-protein
MIKLFAASLLAAGLAFANAAQAAPPLLNVSYDVMRDFYKDYNSAFQKHWKAEKNEEVTVQMSFGGSSKQARSVIDGLPADVITMNMATDINALADNGKLVPEDWVSRLPNNSAPFTSATVFIVRKGNPKAIKDWPDLIKDGVEVIVPNPKTSGNGRYTYLSAWGYTLKKGGDEAAAKKFVGDLFSHVPVLDTGGRGATTTFMTNQIGDVLVTFENEAEMIAREFGRDQFEVVYPSVSAEAEPPVSEVDKVVDRKGSRPLAEEYLKYLWSPEGQEIAAKNYLRPRDPQVLAKYTDRFPKVDFLSVEKTFGDWRTVQKTHFIDGGVFDQIYPGK
>NZ_CP005969.1|WP_003316888.1|4002970_4003378_-|lipoprotein
MYRTARITLLGLVVGLSACAVQHPAPPHSQDPILNLPGGQQPGAPRPSSAPSEPAKAPAAAPKSSASFAPPPGGGSHWDPRLGVYVMDDQPNTFYRQRTYYQWNDGWSWATSPNGPWQATDVSGVPAGLGKQFSK
>NZ_CP005969.1|WP_024659630.1|4003389_4004589_-|c-type-cytochrome-biogenesis-protein-CcmI
MIDFWMATGLLLVVALSFLLIPLLRGHRAQREEDRTALNVALYQERLNELQVQQEQGVLSVMQLQAARAEAARELLADTEGAEPDRTSRLGKPLLVLAALLVPMLGLAGYLQLGASDRVELSREFARPPTSLADMTQRLERSVQAQPDSAENLYFLARSYMAQNRPGDAAQMFERSVALAGRQPELLGQWAQALYFASDKHFTPQVQALTDEALQADPREVTSLGLLGIAAFETQRYQAAVDYWTRLLAALPADDASRSALEGGIARARDSLAKRPANAAPAPAVKAKSIKIHVELAAALQGKVRPNDSVFIFARAINGPAAPLAVKRITVADLPADVELSDSDAMMPQLNLSNFAQVQLVARVSRAGQPTTGEWVGRSQPLASDSGVQQALTIDSPDN
>NZ_CP005969.1|WP_024659629.1|4004585_4005056_-|cytochrome-c-type-biogenesis-protein-CcmH
MKRRLLIVLLSVLCSGIAQAAIDAYAFRDDAERARYSELTRELRCPKCQNQDIADSNAPIAADLRKEIYRMLGEGQSNQQIIDFMVDRYGDFVRYKPSLNARTWLLWFGPAALLVGGLAVIGFIVSRRRKAQSAQADELSEDERQRLATLLDEHRP
>NZ_CP005969.1|WP_024659628.1|4005052_4005589_-|DsbE-family-thiol:disulfide-interchange-protein
MKRWVMVLPLVLFLGVAAFLYRGLYLDPAELPSALIGKPFPAFSLPAVQGERMLSRADLLGKPALVNVWGTWCVACRVEHPVLTRLAQQGVLIYGVNYKDVNADALKWLKEFHDPYQLNIRDQDGSLGLNLGVYGAPETFLIDAQGIIRYKHVGVIDDAVWREKFAARYQQLVDEARP
>NZ_CP005969.1|WP_032655001.1|4005585_4007559_-|heme-lyase-CcmF/NrfE-family-subunit
MIPELGHLAMIMALGFALVQAIIPLIGAWRGDRLWMSLARPAAWGQFSFLIFAFGCLTYAFMVDDFSVAYVAQNSNTALPWYYKFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPQVMLARVLAVMGMISLGFLSFLILTSNPFARLLPQMPANGRDLNPLLQDIGLIVHPPMLYMGYVGFSVAFAFAIAALLGGRLDAAWARWSRPWTLVAWAFLGIGISLGSWWAYYELGWGGWWFWDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVLLAIAAFSLSLLGTFLVRSGVLTSVHAFASDPARGVFILMFLLIVVGGSLTLFAIRAPVVKSHVGFGLWSRETLLLGNNLLLVVAASMILLGTLYPLVIDAMSGAKMSVGPPYFNTLFVPLMGLLLVVMAVGVLVRWKDTPLKWLLGMLAPVLIGSVVLAVLAGLLLGDFQWAVLATLMLAAWVLLAGFRDLLDKTRHKGLISGARSLTRSYWGMQLAHLGIVVCALGVVLSSQNSAERDLRMAPGESTELGGYTFVFEGARHYEGPNFTSDRGTVRVLRNGVQLTELHPEKRFYTVQQSMMTEAGIDAGFSRDLYVALGEPLGDGAWAVRVHVKPFVRWIWLGGLLTGLGGVLAALDRRYRTRVKNKVREALGMSGAAQ
>NZ_CP005969.1|WP_004417065.1|4007562_4008030_-|cytochrome-c-maturation-protein-CcmE
MNPLRKKRLLIIVALLAGVGLAVTLALSALQENINLFYTPSQIANGEAPLDTRIRAGGMVEKGSLQRSADSLDVRFVVTDFNKSVTITYRGILPDLFREGQGIVALGKLNAQGVVVADEVLAKHDEKYMPPEVTKALRDSGQAAPAASPTPVKQG
>NZ_CP005969.1|WP_011268404.1|4008026_4008203_-|heme-exporter-protein-CcmD
MSFASFSDFLAMGRHGVFVWSAYGLCLVVLLINVALPLWARQRFLKQQARRLKRGNRP
>NZ_CP005969.1|WP_004408171.1|4008199_4009003_-|heme-ABC-transporter-permease
MKSNAMKSSIGWAWLHTLGSPKGFYRVSARLLPWMSVVAVLLLVIGMVWGLAFAPPDYQQGNSFRIIYIHVPAAMLAQSCYVMLAVCGLVGLVWRIKLADVALHCAAPIGAWMTALALATGAIWGKPTWGAWWVWDARLTSMLILLFLYFGLIALGNAISNRDSAAKACAVLAIVGVVNIPIIKYSVEWWNTLHQGSTFSLTEKPAMPAEMWLPLLFTTLGFYCLFGVLLMMRMRLEVLRREARTQWVKAEILRSLGHTAAQSENTL

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Crispr_ID: NZ_CP005969_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP005969_7

4458474-4458575

Unclear

Consensus_repeat	Method
GCTCCGCATGGGTATGCCGTTCT	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP005969_7

>merge|NZ_CP005969|7|4458474-4458575|CRISPRCasFinder
GCTCCGCATGGGTATGCCGTTCTGGACGCTCTGCCTCCTGCCTTGAGTGCGCGGACAGCTCTCTGACTATCGTACCCATGCTCCGCGTGGGTATGCCGTTCT

>NZ_CP005969|7|7|4458474-4458575|CRISPRCasFinder
GCTCCGCATGGGTATGCCGTTCT	GGACGCTCTGCCTCCTGCCTTGAGTGCGCGGACAGCTCTCTGACTATCGTACCCAT
GCTCCGCGTGGGTATGCCGTTCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP005969.1\|WP_003363371.1\|4452758_4453139_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005969.1\|WP_148561942.1\|4462604_4465052_+\|outer-membrane-protein-assembly-factor-BamA	unknown	unknown	gnl\|CDD\|274514
NZ_CP005969.1\|WP_011268653.1\|4465598_4466498_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176150
NZ_CP005969.1\|WP_032653482.1\|4460548_4461784_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236532
NZ_CP005969.1\|WP_003402477.1\|4459060_4460398_-\|DEAD/DEAH-box-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|223587
NZ_CP005969.1\|WP_032653490.1\|4466586_4467387_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225158
NZ_CP005969.1\|WP_011268648.1\|4456620_4457349_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273922
NZ_CP005969.1\|WP_003412780.1\|4461795_4462485_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP005969.1\|WP_003412760.1\|4455963_4456476_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005969.1\|WP_003402493.1\|4452354_4452546_-\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|283241
NZ_CP005969.1\|WP_003425465.1\|4457418_4458282_+\|lipoprotein	unknown	unknown	unknown
NZ_CP005969.1\|WP_032653476.1\|4451165_4452131_-\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|224214
NZ_CP005969.1\|WP_002554403.1\|4455607_4455796_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005969.1\|WP_032653487.1\|4465165_4465579_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005969.1\|WP_032653496.1\|4469102_4470365_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP005969.1\|WP_032619965.1\|4467666_4468020_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227262
NZ_CP005969.1\|WP_032653479.1\|4453216_4453618_-\|DUF2177-family-protein	unknown	unknown	gnl\|CDD\|378319
NZ_CP005969.1\|WP_011268646.1\|4454464_4455301_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225543
NZ_CP005969.1\|WP_032653493.1\|4468077_4469106_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223999
NZ_CP005969.1\|WP_011268645.1\|4453762_4454395_+\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|239322

Protein	Function_ID	Function_description	E-value
NZ_CP005969.1\|WP_032653490.1\|4466586_4467387_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|225158	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only].	4.28869e-63
NZ_CP005969.1\|WP_148561942.1\|4462604_4465052_+\|outer-membrane-protein-assembly-factor-BamA	gnl\|CDD\|274514	TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP005969.1\|WP_011268653.1\|4465598_4466498_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176150	cd08461, PBP2_DntR_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.71866e-98
NZ_CP005969.1\|WP_011268646.1\|4454464_4455301_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225543	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only].	1.89195e-109
NZ_CP005969.1\|WP_003402477.1\|4459060_4460398_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	1.82325e-136
NZ_CP005969.1\|WP_032653493.1\|4468077_4469106_-\|alpha/beta-hydrolase	gnl\|CDD\|223999	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only].	2.67987e-44
NZ_CP005969.1\|WP_011268648.1\|4456620_4457349_+\|hypothetical-protein	gnl\|CDD\|273922	TIGR02001, gcw_chp, conserved hypothetical protein, proteobacterial. This model represents a conserved hypothetical protein about 240 residues in length found so far in Proteobacteria including Shewanella oneidensis, Ralstonia solanacearum, and Colwellia psychrerythraea, usually as part of a paralogous family. The function is unknown.	6.73715e-46
NZ_CP005969.1\|WP_003402493.1\|4452354_4452546_-\|CsbD-family-protein	gnl\|CDD\|283241	pfam05532, CsbD, CsbD-like. CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.	5.96802e-09
NZ_CP005969.1\|WP_032653476.1\|4451165_4452131_-\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|224214	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair].	8.02486e-66
NZ_CP005969.1\|WP_011268645.1\|4453762_4454395_+\|DsbA-family-protein	gnl\|CDD\|239322	cd03024, DsbA_FrnE, DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.	7.203e-44
NZ_CP005969.1\|WP_032653496.1\|4469102_4470365_-\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	4.72081e-103
NZ_CP005969.1\|WP_032619965.1\|4467666_4468020_+\|hypothetical-protein	gnl\|CDD\|227262	COG4925, COG4925, Uncharacterized conserved protein [Function unknown].	3.29193e-42
NZ_CP005969.1\|WP_032653479.1\|4453216_4453618_-\|DUF2177-family-protein	gnl\|CDD\|378319	pfam09945, DUF2177, Predicted membrane protein (DUF2177). This domain, found in various hypothetical bacterial proteins, has no known function.	1.2476e-43
NZ_CP005969.1\|WP_032653482.1\|4460548_4461784_-\|HAMP-domain-containing-protein	gnl\|CDD\|236532	PRK09470, cpxA, envelope stress sensor histidine kinase CpxA.	8.43091e-51
NZ_CP005969.1\|WP_003412780.1\|4461795_4462485_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	6.16624e-76

>NZ_CP005969.1|WP_003425465.1|4457418_4458282_+|lipoprotein
MQSLFKAFVTLLMTVALLAGCNQVGLAYRNLDVIIPWTLSDYLDMNSEQKGWLDVRLKQHLSWHCSTQLPEYLTWLDKLEDMVKTDQVTYEGLQARTSEAKEAIAKISKEITPSAVELLSRFDDKQVQEMQESFAKDQRKRENKYLDQPLERQIAERADRMQKRVTPWVGKLNQAQKDRIQAWSASLGEQNKAWIENRTRWQNLFLATVQQRQASDFPQRIAALLQDRETFWTPEYRKAYDQTEKAAISLIVDITALSTPEQRAKLLSRIADMRKDFTDLDCLKSQK
>NZ_CP005969.1|WP_011268648.1|4456620_4457349_+|hypothetical-protein
MLSHRLHVLSFSAMLVCQSVSAQVLERDLGDFDLKLATTPTRSMAQGLVTPTGGSGSFHGGMDLTHESGFYFGQWAPNMGLASDTGMELDSYMGFKKPFDNTLGYELGMIRYSYPDTSQIDSHEFYAGLRMRDSRIGAAFSNDVGTRDSTVFVDLGAIEQLGVGVRMQYANHQFDTPQSAADGGLINGFNDWSLNLSRPWLGIDMNLIYSGSSLSGGDCSVYSGHNARCDGTFTLKAVRSFF
>NZ_CP005969.1|WP_003412760.1|4455963_4456476_+|hypothetical-protein
MKNWMLFGALVYLGGCASHHCENGPNDSQLTDSPCRAEHLLYQNDMLQAKLLISEDNRENYELAEAMLRRAALDDASGEAEFYQAVLLIRQQADQKQIIDLLQTAAKHKHPLAIALLSQQLSVSDPKLAERYQSEYAQLDVAKSGYPSFEQALVVIRGLIIPSARTTAAN
>NZ_CP005969.1|WP_002554403.1|4455607_4455796_+|hypothetical-protein
MAAMRIKASHSKAKPAPAVETSDSINAQIAAFLKSGGEIQQIAKGVSGQTFAPSKQINLGKK
>NZ_CP005969.1|WP_011268646.1|4454464_4455301_-|GntR-family-transcriptional-regulator
MALIGRYNSLQIVKHTNFGLYLDGAQDGEILLPNRYIPKDVPTEDEDWLNVFIYLDSEDKLLATTEKPKVQVGEFASLKVVEVNSIGVFLDWGLPKDLLLPYSEEKRTLQAGDYCVVHVYLDKHTRRITATARLDRYLDKTPANYSVGQEVDLLVAEATDMGFKAIINNKHWGLIHKNEVFKFMRAGKQEKGYIKEIRSDGNISLSLQPVGAEAASSLNSKILTKLRENNGTLPVSDKSDPQVISGLFGVSKGNFKKAIGALYKQGQIVIHADRIELV
>NZ_CP005969.1|WP_011268645.1|4453762_4454395_+|DsbA-family-protein
MNTVGPLKIDVWSDYVCPFCYLQLAVLEQLQQTYGERLEFNWHAFELRPDPLALLDPSADYLRETWSRSVLPMADRRQVMMKMPSVQPRSRKVLEAAVFARNAGGFEAFHKEAYRAFFEKGLDISETHTLLELATTTGLDRQAMEQALNAGHFEKAVLDDRQLAQKLGLRAVPVVLLRRSDEALEDARVFNGTLPFERLSQEIDALATWA
>NZ_CP005969.1|WP_032653479.1|4453216_4453618_-|DUF2177-family-protein
MKRILIAYFGTLLAFLILDGLWLGVLMGPTYREWLGPLMLDTPVLGPAIAFYLLYGAGVVFFGVMPALRAQRLSHATLCSGLMGLIAYGTYDLTNWATLQGWPAQLALVDHAWGTVVSALAGTAGYLAVRRFA
>NZ_CP005969.1|WP_003363371.1|4452758_4453139_+|hypothetical-protein
MKLDKKLAIARRNQDLGGAVLGVNNTHFAVLDHKRNIWWFDLPVPRLQVGQYEWLHLLLHTPETDQLLHLKVTTVFMRDHMEGLEVRNADKRKPTVSLELSADKDSFLKDMRPKGSNLSFAGFLQK
>NZ_CP005969.1|WP_003402493.1|4452354_4452546_-|CsbD-family-protein
MSSTSDKAKGMANEAVGNVKQAVGKATDNDKLQAEGKVQELKGEGQQTVGKVKDAIKKGVDKA
>NZ_CP005969.1|WP_032653476.1|4451165_4452131_-|YihY/virulence-factor-BrkB-family-protein
MIFPHLRKLKVGKVLVRTVNEFLDDEMSTYASALAYQMLFSLFPFLLFLIALIGFLHLPDFFSWLRLQSEFLLPPQALEQVNPVIDQLQQSKGGLLSIGIVIALWTASAGVRLMMSAMNAAYDVVEGRPIWKRLPLSILYTVGIAGMLLAAAAFMVLGPQVMNWIAAQIGMEDFIVTLWTILRWPAIIILLMVAVALIYYVMPDVKQEFRFITPGSVLAVVVWIVASLAFGFYVKTFADYNAMYGSIGAIIVLLLYFYISAAVLLLGAEMNAVIEHMSAEGKDAGEKEAGDGGEESSETVKQHVSGLGRAHSVPLQKADEA
>NZ_CP005969.1|WP_003402477.1|4459060_4460398_-|DEAD/DEAH-box-helicase
MFSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLANETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVERYLKQSFERRVIKEVKGTYGGPKKVKASGKAVGVKKKKTDAKGDKKKVAAKGPTKRKTVNRPKSDLVSQDGMAPLKKRSTPAPAAE
>NZ_CP005969.1|WP_032653482.1|4460548_4461784_-|HAMP-domain-containing-protein
MFWKLFLAFWLATSLTFMVGAGLFMFTQSGRGDPSFSTVLDNEVRILQRSGIAAGRALLDAWQPEGQGRVGLYDNQGLLLAGEALENPRFELAVHTREGALVHIRSTQRPNHDDQPSHLNPLITGTVMSALFSWFLSSYLVAPLMKLREAMGKVARGRFDTRVKPDMGRRRDEIVDLAEDCDRMANQLKVMADSQQQLLHDISHELRSPLTRMSAAIGLLRQEPSQLDMLERIERESERMDSLIEELLTLARMQSDVESLTREKVDVISLLAAIVEDAEFEAGLKQCRVRLQAPGSFVAQVDSELLYRAFENVIRNAVRHTAVGTDVVVVANVQAQPLCLMVNVIDQGPGVDEACLQRIFQPFERGPENAAQGFGLGLAIALRAIEMHGGQIAARNRPGGGLVVDVLLPVS
>NZ_CP005969.1|WP_003412780.1|4461795_4462485_-|response-regulator-transcription-factor
MTSVLLVDDDRELTEMLSQYLTRESFDVTCTNSAEEGEIEALSGRHDIVVLDIMMPRISGIEVLRRIRAQSQVPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIMRRVRAVSVVDAVRDVIQAGELMLWPGKREARWQGVTLELTGNEFCLLEELARHAGQLVSKQNLSMNALGRPLARYDRSIDVHISSIRHKLGPRNDNQSWIQSVRNLGYMLITP
>NZ_CP005969.1|WP_148561942.1|4462604_4465052_+|outer-membrane-protein-assembly-factor-BamA
MLRSQQRPPDRPFLACHRQRSNAFVAAFWKGFDDFFASASIVLPHADTFSISDIRVNGLQRVSAGSVFAALPLNVGDQADEQRLADASRSLFKTGFFQDINVARDGNVLVINVVERPSIASIEIVGNKVISTDDLMKGLKQSGLSEGEIFQRATLEGVRNELQRQYVSQGRYSASVDTQALPAPRNRIALKITIDEGTVASIQHINVVGNTVFSDEQLADQFQLKTSNWLSFFKNDDKYAREKLSGDLERLRSWYLDRGYINMDINSTQVSLTPDKKGVFITVNITEGDRYTVGSVKLGGDLKVPKDQLEQLILVKPGQVFSRKVMTDSTNLITRRLGNDGYTFANVNGVPKANDADHTVDISFVVDPGKRAYANRINFRGNTKTADEVLRREMRQMEGGWASTYLIDQSKVRLERLGFFKEVNVETPAVPGTDDQVDINYAVEEQASGNITASVGFSQSAGLILGGSISQNNILGTGNFASLGMTRSEYQTKYNFAFTNPYFTPDGVSLGYNVFYNATDYSKYYDDDDEVSYYSLNSVGAGVNLGYPISETSRLTYGLSIQRDTLDPGSYSADEIYDFIEREGDAFTNLKASVGWSESTLNKGVLATRGHSQSLTLTSTVPGSDLQFYKLDYNGQTFLPLSDTTSLRLHTKLGYGNGYGDTDGLPFYENYTAGGQATVRGFKDGTLGPRNTPATGAYASQGQIYYSDRDTEALGGNILITGGMEYLFPMPFVKDQKSLRTSLFWDFGTVYADKCYLTTTQNCGNINIDQMASSVGVGVTWYSPLGPLSFDLAVPIKKPEDAETQVFQFSLGQTF
>NZ_CP005969.1|WP_032653487.1|4465165_4465579_+|hypothetical-protein
MSREVRQITPDVEEIIQHALRSLLGKGFVIALFGSEDATGAMHYHLRIDHDATGLGIEHHDHVEDGFIDDIFMLATRMKAMLKQRETLSRMHGGSQATGQVRLLTWITEDNSQTVVQTAEAAGRECLSALRERRLRA
>NZ_CP005969.1|WP_011268653.1|4465598_4466498_-|LysR-family-transcriptional-regulator
MNNTLRRIDLNLLVTLDALLSEQNVTRAAHRLNLTQPTVSLQLGRLRQVLEDPLLLPGPRGMTPTARAEELREPLRQALAALESALLPGRDFDPATADHTWRVAASDYATTALIWPSLGRLRNSAPGTRLAMLNKQPVSLAADLESGRLDLALHTRDEAPPKLRQRSLIHERYVLAARHDHPDLVQPVSLTRFCELEHAVMSPNGGGFAGSTDQALAALGLSRRVVLSAPHFGSLVSALTCSDLVAVVPERLVRNQPTLVVQEPPLSIPGFEMLMLWPERLHRDPAHRWLRELMVAAID
>NZ_CP005969.1|WP_032653490.1|4466586_4467387_+|NAD(P)H-dependent-oxidoreductase
MNVLIVYAHPEPRSLNGSLKDFAVDHLQNNGHQVQVSDLYQMGWKAIIDANDAPGLENNRRFDPALESQRVFAAGIQPPDIEAEQARLLWADAVIFQFPLWWFSMPAIMKGWIERVYACGFAYGVGEHSDHHWGDRYGEGTLAGKRAMLVVTMGGWESHYSERGVNGALNDVLFPIQHGILFYPGFDVLAPFPVYRAGKVDSATFARICADYGNRLDTLFTLEPLPFRRQNDGDYEIPALTLRPELAAGRQGLGIHLRDEDGPADL
>NZ_CP005969.1|WP_032619965.1|4467666_4468020_+|hypothetical-protein
MNVRMYAGDKVVMLHLDDSETARDFVSLLPVELTLEDYAATEKISMLPRKLNVTGAPAGVTPIEGDIAYYAPWGNLAIFHKGFKYSHGLIRLGRVESGIEVIRQPGTVAVRFEVAND
>NZ_CP005969.1|WP_032653493.1|4468077_4469106_-|alpha/beta-hydrolase
MKKILLMLGLLISSYAATGADMSHGADNFYTSDKVVAQKVLFNNQYKMKVAGNLFIPKGSNPNVKAPAIIVGHPMGAVKEQSANLYAQKLAEQGFVTLSLDLSFWGGSEGQPRNAVSPDLYAEDFSAAVDFLGTQTFVDKNRIGVLGICGSGSFVISAAKIDPRMKAIATVSMYDMGAANRNGLKHSQTLAQRKKIIEQAALQRDVEYSGGDTAYTSGTVHKLTDKSAPIEREFYDFYRTPRGEFTPEGQSPELTTHPTLTSNIKFMNFYPFNGIATISPRPMLFIAGSKAHSLEFSEEAYKLAGQPKQLIIVPEAGHVDLYDRVDLIPFDKLGEFFKNNLK
>NZ_CP005969.1|WP_032653496.1|4469102_4470365_-|MFS-transporter
MQAFDSTLKQSEITTHPPAWGAVFSMALCVVVLIASEFMPVSLLTPIAQDLGISQGQAGQAISISGFFAVLTSLLNTPLTGHLDRKPVLLGFSLLLLVSGVIVTLASNGWLFMTGRALLGIAIGGFWSMSTATVMKLVPKQSVAKGLALVNGGNALAATVAAPLGSFMGQYIGWRGAFFLVIPLAALAFAWQWLSLPAMRSQPHNRARNPFRLLRNPQVAVGMSAILLLFMGQFAVFTYLRPFLEEITGVSVNTLSLMLLALGASGLVGTYLIGRLLHKGLYACLIAIPLLMAVLAVALTGMGHSPQAVAIVLAVWGLIATPAPVAWGLWLSRTLPDDAEAGGGLMVATIQLAITAGAGIGGALFDRLGWWSPFAFGGVLLACSAALAWTARDNASLQESNTGQGRADKRGSISQRGNTP

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Crispr_ID: NZ_CP005969_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP005969_8

5633522-5633630

Orphan

Consensus_repeat	Method
AACTGCGTTCCCACGCTGGAGCGTG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP005969_8

>merge|NZ_CP005969|8|5633522-5633630|CRISPRCasFinder
AACTGCGTTCCCACGCTGGAGCGTGCTCTGCGTCGCATGCCTTTCTGGACGCTCCGCGTCCTCTTGACGACGCAGAGCGTCGAAAACTGCGTTCCTACGCTGGAGCGTG

>NZ_CP005969|8|8|5633522-5633630|CRISPRCasFinder
AACTGCGTTCCCACGCTGGAGCGTG	CTCTGCGTCGCATGCCTTTCTGGACGCTCCGCGTCCTCTTGACGACGCAGAGCGTCGAA
AACTGCGTTCCTACGCTGGAGCGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP005969.1\|WP_003320832.1\|5625303_5625630_-\|MliC-family-protein	unknown	unknown	gnl\|CDD\|378282
NZ_CP005969.1\|WP_046722299.1\|5645606_5650067_+\|RHS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225750
NZ_CP005969.1\|WP_011269228.1\|5623386_5623806_+\|DUF3010-family-protein	unknown	unknown	gnl\|CDD\|378599
NZ_CP005969.1\|WP_032655829.1\|5628535_5630533_-\|transketolase	unknown	unknown	gnl\|CDD\|183723
NZ_CP005969.1\|WP_003405181.1\|5630791_5631787_+\|metalloregulator-ArsR/SmtB-family-transcription-factor	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|369777
NZ_CP005969.1\|WP_032655828.1\|5627408_5628452_-\|erythrose-4-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|130595
NZ_CP005969.1\|WP_032655830.1\|5633843_5635529_+\|NAD-dependent-DNA-ligase-LigB	unknown	unknown	gnl\|CDD\|236150
NZ_CP005969.1\|WP_003316354.1\|5625964_5626195_-\|lipoprotein	unknown	unknown	unknown
NZ_CP005969.1\|WP_032655831.1\|5636542_5637934_-\|heavy-metal-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|273593
NZ_CP005969.1\|WP_003405189.1\|5637930_5638605_-\|heavy-metal-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|130454
NZ_CP005969.1\|WP_032655835.1\|5644906_5645494_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005969.1\|WP_032655833.1\|5640152_5641427_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273386
NZ_CP005969.1\|WP_003405186.1\|5636026_5636428_-\|MAPEG-family-protein	unknown	unknown	gnl\|CDD\|226211
NZ_CP005969.1\|WP_032655834.1\|5641451_5644616_+\|CusA/CzcA-family-heavy-metal-efflux-RND-transporter	unknown	unknown	gnl\|CDD\|129992
NZ_CP005969.1\|WP_032655827.1\|5625682_5625880_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP005969.1\|WP_003405184.1\|5635569_5635980_+\|DUF1090-domain-containing-protein	unknown	unknown	gnl\|CDD\|368932
NZ_CP005969.1\|WP_032655832.1\|5638858_5640085_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_CP005969.1\|WP_003372639.1\|5631807_5632998_+\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NZ_CP005969.1\|WP_003405174.1\|5626222_5627386_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_CP005969.1\|WP_003316351.1\|5624125_5625190_-\|fructose-bisphosphate-aldolase-class-II	unknown	unknown	gnl\|CDD\|181691

Protein	Function_ID	Function_description	E-value
NZ_CP005969.1\|WP_003320832.1\|5625303_5625630_-\|MliC-family-protein	gnl\|CDD\|378282	pfam09864, MliC, Membrane-bound lysozyme-inhibitor of c-type lysozyme. Lysozymes are ancient and important components of the innate immune system of animals that hydrolyze peptidoglycan, the major bacterial cell wall polymer. Various mechanisms have evolved by which bacteria can evade this bactericidal enzyme, one being the production of lysozyme inhibitors. MliC (membrane bound lysozyme inhibitor of c-type lysozyme) of E. coli and Pseudomonas aeruginosa, possess lysozyme inhibitory activity and confer increased lysozyme tolerance upon expression in E. coli. Structural analyses show that the invariant loop of MliC plays a crucial role in the inhibition of the lysozyme by its insertion into the active site cleft of the lysozyme, where the loop forms hydrogen and ionic bonds with the catalytic residues.	2.42956e-13
NZ_CP005969.1\|WP_046722299.1\|5645606_5650067_+\|RHS-domain-containing-protein	gnl\|CDD\|225750	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane].	1.87444e-41
NZ_CP005969.1\|WP_011269228.1\|5623386_5623806_+\|DUF3010-family-protein	gnl\|CDD\|378599	pfam11215, DUF3010, Protein of unknown function (DUF3010). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.	1.91982e-51
NZ_CP005969.1\|WP_032655829.1\|5628535_5630533_-\|transketolase	gnl\|CDD\|183723	PRK12753, PRK12753, transketolase; Reviewed.	0
NZ_CP005969.1\|WP_003405181.1\|5630791_5631787_+\|metalloregulator-ArsR/SmtB-family-transcription-factor	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.31379e-16
NZ_CP005969.1\|WP_032655828.1\|5627408_5628452_-\|erythrose-4-phosphate-dehydrogenase	gnl\|CDD\|130595	TIGR01532, D-erythrose-4-phosphate_dehydrogenase_E4PDH., erythrose-4-phosphate dehydrogenase. This model represents the small clade of dehydrogenases in gamma-proteobacteria which utilize NAD+ to oxidize erythrose-4-phosphate (E4P) to 4-phospho-erythronate, a precursor for the de novo synthesis of pyridoxine via 4-hydroxythreonine and D-1-deoxyxylulose. This enzyme activity appears to have evolved from glyceraldehyde-3-phosphate dehydrogenase, whose substrate differs only in the lack of one carbon relative to E4P. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine].	0
NZ_CP005969.1\|WP_032655830.1\|5633843_5635529_+\|NAD-dependent-DNA-ligase-LigB	gnl\|CDD\|236150	PRK08097, ligB, NAD-dependent DNA ligase LigB.	0
NZ_CP005969.1\|WP_032655831.1\|5636542_5637934_-\|heavy-metal-sensor-histidine-kinase	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	1.28703e-123
NZ_CP005969.1\|WP_003405189.1\|5637930_5638605_-\|heavy-metal-response-regulator-transcription-factor	gnl\|CDD\|130454	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator. Members of this family contain a response regulator receiver domain (pfam00072) and an associated transcriptional regulatory region (pfam00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system. [Regulatory functions, DNA interactions].	1.49006e-114
NZ_CP005969.1\|WP_032655833.1\|5640152_5641427_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273386	TIGR00999, Nickel-cobalt-cadmium_resistance_protein_NccB, Membrane Fusion Protein cluster 2 (function with RND porters). [Transport and binding proteins, Other].	5.07394e-69
NZ_CP005969.1\|WP_003405186.1\|5636026_5636428_-\|MAPEG-family-protein	gnl\|CDD\|226211	COG3686, COG3686, Predicted membrane protein [Function unknown].	1.95795e-38
NZ_CP005969.1\|WP_032655834.1\|5641451_5644616_+\|CusA/CzcA-family-heavy-metal-efflux-RND-transporter	gnl\|CDD\|129992	TIGR00914, Nickel-cobalt-cadmium_resistance_protein_NccA, heavy metal efflux pump, CzcA family. This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Detoxification, Transport and binding proteins, Cations and iron carrying compounds].	0
NZ_CP005969.1\|WP_003405184.1\|5635569_5635980_+\|DUF1090-domain-containing-protein	gnl\|CDD\|368932	pfam06476, DUF1090, Protein of unknown function (DUF1090). This family consists of several bacterial proteins of unknown function and is known as YqjC in E. coli.	2.17836e-27
NZ_CP005969.1\|WP_032655832.1\|5638858_5640085_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	8.88775e-40
NZ_CP005969.1\|WP_003372639.1\|5631807_5632998_+\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_CP005969.1\|WP_003405174.1\|5626222_5627386_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP005969.1\|WP_003316351.1\|5624125_5625190_-\|fructose-bisphosphate-aldolase-class-II	gnl\|CDD\|181691	PRK09196, PRK09196, fructose-bisphosphate aldolase class II.	0

>NZ_CP005969.1|WP_003372639.1|5631807_5632998_+|methionine-adenosyltransferase
MSEYSLFTSESVSEGHPDKIADQISDAVLDAIIAEDKYARVACETLVKTGVAIIAGEVSTSAWVDLEDIVRNVILDIGYNSSDVGFDGATCGVMNIIGKQSVDIAQGVDRSKPEDQGAGDQGLMFGYASNETDVLMPAPITFSHQLVQRQAEARKSGLLPWLRPDAKSQVTCRYENGKVVGVDAIVLSTQHNPDVSYKDLREGVMELIVKHVIPAHLLHKDTQFHINPTGNFIIGGPVGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAERCEIQVSYAIGVAQPTSISLNTFGTGKLSDDKIIKLVRDNFDLRPYAITTMLDLLHPMYQATAAYGHFGRIPVEMTVGDDTFTAFTWEKTDRADALRAAAGL
>NZ_CP005969.1|WP_003405181.1|5630791_5631787_+|metalloregulator-ArsR/SmtB-family-transcription-factor
MNLRVPAIRHDACDDLSALCKAGGDPLRLNVLRVLTNDSFGVLELAQIFAIGQSGMSHHLKVLAQADLVATRREGNAIFYRRALPHTELPGGRLHAALLDEVDTLDLPDDVQSRIGLVHRQRALASQDFFARTAEKFRAQQDLIAGLAQYSESLLTLLDKLSFGAQATALEVGPGDGGFLPELARRFAQVIAMDNSPVMLDLARGVCERKALANVELRLADALTDAKVSADCVVLNMVLHHFAVPAEALRQLAEHVKPGGSLLVTELCSHDQSWAREACGDLWLGFEQEDLARWAIAAGLVPGESLYVGLRNGFQIQVRHFQRPAGDTHHR
>NZ_CP005969.1|WP_032655829.1|5628535_5630533_-|transketolase
MPSRRERANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDYLKHNPANPSFADRDRFIMSNGHGSMLVYSLLHLTGYDLSIDDLKSFRQLHSRTPGHPEYGYTPGIETTTGPLGQGFANAVGFAAAEKTLAAQFNRPGHSIVDHHTYVFMGDGCMMEGISHEAASLAGTLQLNKLIAFYDDNGISIDGEVEGWFTDDTPKRFESYGWLVIRNVDGHDPEEIKTAIETARKSDQPTLICCKTTIGFGSPNKQGKEESHGAPLGADEIALTRAALKWNYGPFEIPADIYAEWNGKEKGLAAEAEWDQRFADYSAAFPELANDFIRRMSGQLPADFADKSAAYVAEVNAKGETIASRKASQNALGALGPLLPEILGGSADLAGSNLTIWKGCKSITGEDPNGNYLHYGVREFGMGAMMNGIALHGGFVPYGATFLIFMEYARNAVRMASLMKKRVIYVFTHDSIGLGEDGPTHQPIEQLTSLRTTPNLDTWRPADAVESAVAWKHAIERDDGPSALIFSRQNLTHQARDEKQLSYIARGGYVLRDCAAEPELILIATGSEVGLAVQAYDKLTEQGRNVRVVSMPCTSIFEAQDAAYKQAVLPLQVSARIAIEAAHADYWYKYVGLEGRVIGMTTFGESAPAPALFEEFGFTLENVLSTAEELLED
>NZ_CP005969.1|WP_032655828.1|5627408_5628452_-|erythrose-4-phosphate-dehydrogenase
MPQPRPYKVALNGYGRIGRCVVRALCERGAKAGFEVVAINDLADMASLEYLTRFDSTHGRFPGEVRVEGQYLHINDHRIKVLRSATPEGIDWAALEVDLVLECSGVYNTREDGQRFLDAGAPRVLFSQPMASERDVDATVVFGINQHKLTGRELLVSAASCTTNCSVPLLRLLDQAIGLEYMTITTIHSAMNDQPVIDAYHHDDLRRTRSAFQSIIPVSTGLARGIERLLPELAGRIQAKAVRVPTVNVSCLDITLQMSRDTDALEINRILREAATSGPLKGLLAYTELPHASCDFNHDPHSAIVDASQTRVSGPRLVNLLAWFDNEWGFANRMLDVADHFLRVADQ
>NZ_CP005969.1|WP_003405174.1|5626222_5627386_-|phosphoglycerate-kinase
MTVLKMTDLDLQGKRVLIREDLNVPVKDGVVSSDARILASLPTIRLALEKGAAVMVCSHLGRPTEGEFSAENSLKPVADYLSKALGRDVPLVADYLDGVDVKAGDVVLFENVRFNKGEKKNADELAQQYAALCDVFVMDAFGTAHRAEGSTHGVAKFAKVAAAGPLLAAELEALGKALGAPAQPMTAIVAGSKVSTKLDVLNSLSGICNQLIVGGGIANTFLAAAGHKVGKSLYEPDLLDTARAIAAKVSVPLPTDVVVAKEFAESAAATVKLIADVADDDMILDIGPQTAAHFAELLKSSGTILWNGPVGVFEFDQFGEGTKTLAKAIAESQAFSIAGGGDTLAAIDKYGVAQQISYISTGGGAFLEFVEGKVLPAVEVLEQRAKA
>NZ_CP005969.1|WP_003316354.1|5625964_5626195_-|lipoprotein
MVRALPWFLIAGLLAGCAGKPAAEEVESDSPTQPLQLSCYQAGWQAETVPVVYKRGGPEVWDRYEFMPRTGNVGCL
>NZ_CP005969.1|WP_032655827.1|5625682_5625880_-|hypothetical-protein
MKIAALALMSCLVLAGCTGSGSRAKTCQIFSPADVNVPTTENSQRVEAHVTGEPADDRKQEQNCP
>NZ_CP005969.1|WP_003320832.1|5625303_5625630_-|MliC-family-protein
MKGVIALGVLAVLGGCSSMSSPQQNDPWNRWVCDSNAEVNWRYIDSAKKEVDVRLNQSDQVFRLKAEPGAASGTLYSNNVLAFVNKGSEGLIYWDATNDLIGRGCKAR
>NZ_CP005969.1|WP_003316351.1|5624125_5625190_-|fructose-bisphosphate-aldolase-class-II
MALISMRQMLDHAAEFGYGVPAFNVNNLEQMRAIMEAADKTDSPVIVQASAGARKYAGAPFLRHLILAAIEEFPHIPVVMHQDHGTSPDICQRSIQLGFSSVMMDGSLREDGKSPADYDYNVDVTRRVVSFAHACGVSVEGELGVLGSLETGMAGEEDGVGAEGVLDHSQMLTDPEEAADFVKRTQVDALAIAIGTSHGAYKFTKPPTGDILAIERIKEIHKRIPNTHLVMHGSSSVPQEWLKIINEFGGDIKETYGVPVEEIVEGIKHGVRKVNIDTDLRLASTGAIREFMAKNPSEFDPRKYLAKTVSAMRDVCIARYEAFGTAGNASKIKPISLDAMFERYARGELDAKVN
>NZ_CP005969.1|WP_011269228.1|5623386_5623806_+|DUF3010-family-protein
MIICGVEIKGSEAIFALATRQSSGLAHLPLATKKIALEDDEEPANVKAFATQIAGFVRENGVSHIAIKKRSKKGEFAGGPTTFKIETIFQLMSDCDVVLISPQTINAQNKKHTFALPDTLNKYQHEAYKAACAGLMKSV
>NZ_CP005969.1|WP_032655830.1|5633843_5635529_+|NAD-dependent-DNA-ligase-LigB
MLPTFRLMTCALVFVLPGLGHARQCPDWPAAKARSEATALQQQIAEWDDSYHRQGISQIADELYDQARQKLNLWRSCFAVSIPESDPLKTAVGPLPHPVPHTGVNKLADEGSVKGWLKGRNDLWIQPKVDGVAVTLVYEKGRLVQAISRGDGRKGQDWTSQARLIKAIAQQLPQAESPILQGELYWQLDDHIQAASGSVNARSKVAGLLARQTISPQQADAIGLFVWDWPNGPADMAQRLAGLQAMGFEDSAAYTHPLENYAQAARWREHWYRNPLPFATDGVIMRQGQRPPAQRWQASAPYWIAAWKHPYAQALAEVRKVNFKIGRSGRITPVLELTPVRLDDRTVSRISTGSLQRWQTLDIRPGDQIAVSLAGLTIPRLDGVVSRATERADMIVPRADDFHELSCWQATPGCESQFRARLAWLSGKKGLALPGVGPGTWNTLIDNGQIMGLLDWMTLNHAELVNIPGFAERSSAKLLDSLQTARERPFQTWLKAIGLPPTGGARLPDNWHELAGRSVEQWQAEPGIGPGRAARLRAFFQDPQVQALSQQLQAQSISGFK
>NZ_CP005969.1|WP_003405184.1|5635569_5635980_+|DUF1090-domain-containing-protein
MQFLSPLILFTSCTLLATTVFADAQAPVQSECQIKSQEISSKIQNAKTEGDKTEQANLEKALAEVNANCTETSLIKQRKQKVLDAKQEVSRRQTDLNKAMEKGDPEKINKRKDKLADSRKELQEAQTELEKVQPDD
>NZ_CP005969.1|WP_003405186.1|5636026_5636428_-|MAPEG-family-protein
MTVAFWCVLVAILLPIICAGIAKFGSGKFGSGHNHDPRAFLDKLEGFPRRAHAAQLNSFEVTPAFAAAVIIAHIAGNAQLVTIDVLAVLFITSRLLYIIFYLADLAALRSLVWLVGMGLIIALFGVSAFPAVS
>NZ_CP005969.1|WP_032655831.1|5636542_5637934_-|heavy-metal-sensor-histidine-kinase
MKLTRLSTRLGLTVAALIGCLVLVMEMLAYTAISRQLDIRAEDALSEKFRQIEHSMSEGFLGVADIVQYPHTLRDQIVGHDSFSLTILDSGNPRQELMSVGNVEGRNLPVPDADTLPQGFQELKSAQGHKILLGYRTVRLKTGQDVLVRLSMDRESDTVLLHAYVTSTCLALPVILLLVGFGVWWVVRRGLRPLGAFRKVTALISARDLSHRMKVKGLPDELRDLAHAVNFMLHRLDGDVQQLAQFSDDLAHELRSPMNNLMGRAQVTLSRPRPAEEYKQALESCTEELERMSRMISQMLFLASVSQPAAPLPVEVIDLREEADKVAELFSSSAEDRDITLQVQGHARATGDRLMIQRAISNLLSNAIRHGLSGSVITVTLATHEDEVSLAVRNAGDGIDAEHLPRLFDRFYRVHVSRARQQGGTGLGLAIVRSIMSLHEGQVTVRSEPSQFTTFSLIFPKLV
>NZ_CP005969.1|WP_003405189.1|5637930_5638605_-|heavy-metal-response-regulator-transcription-factor
MRILVVEDEPKTAEYMHQGLTESGYVVDIANTGLDGLYLAQHQAYDVVILDVNLPEMDGWEVLSRLRKTVNTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSEQTTTAKVLQVGDLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVWDMNFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEVRE
>NZ_CP005969.1|WP_032655832.1|5638858_5640085_+|TolC-family-protein
MRVGALCLMLLPFIAPGMAMAQGISLPQALEAAFARNPELAAAQWEIGVAEGDRQQAGLIPNPTVSWEVEDTRRETSTTTVILSQALELGGKRGARIEAASKGQDAARLELERRGNELRAEVVQAFYAAARAQAGLELARQSRTLAERGLEVAEGRVRAGKVSPVEATRAQVQLAETDLLVRRAETLKINSKRELARTTGSPLASFERLDYSDLSPGKLPPSAKLLNALNQSAELRLAQTQIEQREAALGSERAKRIPDLTVSVGSQYSREERERVNVVGLSMPLPLFDRNQGNVLAASRRADQSRDLRNAVELKLRTQTQFALDQWTTAAQEVESFDRVILPAAQRAVDTATRGFEMGKFGFLEVLDAQRTLISARNQYLESLATATEARVAIERIHGDLNRFSLNP
>NZ_CP005969.1|WP_032655833.1|5640152_5641427_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MNNKRSIAIALAVVVIIGLGSLTLNPQMLPFAAGPKPSAEEHAHDAEQGHSEEPGHADEQGHGNEAKKPDAAASEPSHEEEEEGHIELTAEQIKAAGIELASAEPRQMSTTVTFPGEIRFDEDRTAHVVPRVSGVVEAVKVDLGQSVKKGQVLAVIASQQISDQRSELNAAQRRQELARLTLQREKKLWEDRISAEQDYLQARQDFQEADINLANARQKISAIGASTHPSAGSRYELIAPFDAVVVEKHLGIGEMVSEASNAFTLSDLSRVWATFGVAPRDLDKVVVGRPVIVSAPDLNARVEGRVGYVGSLLGEQTRAAAVRVTLANPQGAWRPGLFVSVEVAAEQASVAVSLPESAIQSVEDKPSVFVRNAEGFQLTPVTLGRRDGGHVEIVKGLAAGTQVATAGSFILKSELGKGSAEHAH
>NZ_CP005969.1|WP_032655834.1|5641451_5644616_+|CusA/CzcA-family-heavy-metal-efflux-RND-transporter
MFERLIQFAIEQRIVVMLAVLLMAGLGIASYQKLPIDAVPDITNVQVQINTSAPGFSPLETEQRITFAIETNMAGLPGLQQTRSLSRSGLSQVTVIFEDGTDLFFARQLVNERLQIAKDQLPEGVDTMMGPISTGLGEIFLWTVEAREGALKEDGTPYTPTDLRVIQDWIIKPQLRNVPGVAEINTIGGFARQYQIAPDPKKLAAYKLTLNDLVAALERNNANVGAGYIERGGEQLLIRAPGQLGTVDDIANIVIANVQGTPIRISSVAEVGIGKEMRSGAATENGREVVLGTVFMLIGENSRTVSQAVAAKLAEINRTLPQGVEAVTVYDRTTLVEKAIATVKKNLIEGAILVIVILFLFLGNIRAALITAMVIPLAMLFTFTGMFTNKVSANLMSLGALDFGIIVDGAVVIVENAIRRLAHAQQKHGRMLTRSERFHEVFAAAREARRPLIFGQLIIMVVYLPIFALTGVEGKMFHPMAFTVVIALLGAMILSVTFVPAAIAMFVTGKVKEEEGFVMRTARQRYAPILSWVLGHRSIAFGMAFVLIVLSGFTASRMGSEFIPSLSEGDFALQALRVPGTSLTQSVDMQQRLEKAIIEKVPEVQRVFARTGTAEIAADPMPPNISDSYVMLKPQSEWPDPDKSRETLIADLQKAAAGVPGSNYELSQPIQLRFNELVSGVRSDVAVKVFGDDMSVLNQTAAKIAATLQKVPGASEVKVEQTTGLPVLTINIDRDKAARYGLNVADVQDAIAIALGGRQAGTLYEGDRRFDMVVRLSEQLRTDVDGLSSLLIPVPAVTGSSAGNQQISFIALSQVASLDLVLGPNQISRENGKRVVIVSANVRGRDLGSFVEEASTTIDNGVQIPAGYWTSWGGQFEQLQSAAKRLQIVVPVALLLVLALLFMMFNNLKDGLLVFTGIPFALTGGVMALWLRDIPLSISAGVGFIALSGVAVLNGLVMIAFIRSLREQGHSLHNAINEGALTRLRPVLMTALVASLGFIPMALATGTGAEVQRPLATVVIGGILSSTALTLLVLPALYQWAHRREDEEVVEALK
>NZ_CP005969.1|WP_032655835.1|5644906_5645494_+|hypothetical-protein
MTRTSIYDRISERRLADEALAREAAERAAAQQALERVQALIPVPKPLLNAPCSFNFGGFHFGFSEGFQCNAIEATVQVGGEPVVISVQRRDVPEEATLAEAFAEAVKALQPRHGEVQVIRHSETLLAGNAALALDFHFRAGLEERHGRLIGAIVPCADHNERQWLSVGCVIDSEKPALKTWLLDFDSMLEGLTAS
>NZ_CP005969.1|WP_046722299.1|5645606_5650067_+|RHS-domain-containing-protein
MFEAARLLDEIEHTGAMAGFVLGAIVGIAAVAYVSLTVATCGFGGFLLAMAVGLAGNAIASIGESIGSAFSSPAGQIESASPNVFINGRPAAFAIESTAVCDKHSPIVKVAEGSSNVFINGQPAARKGDKLTCGAKIGTGSPNVFIGGGTQRYLPVDDEVSATARYTVDILLVVAGGAKAVLSIAKLGMQAGLKAAGPCALQFMGGVFLGDAIFRFGVAPVAEKVLGGLHGNPVDTTTGRKLLIDESDFSLPGLMPIEWTRFYASDLDVGSALGKGWVLPWEQSLRRKGSFLYLSDNQGRSVPFVTLDYNQRIYNAQEQLYLVRTEGGHYLLQTLDNVFYYFGEVPDDNHPVPLQRVENALGHFLHFVRSEDGVLTDICATGGHRVHLHYDEVNSRLSTVKRIVGDQAVETLVRYGYDNNGQLNSVYNRNGDSVRNFSYTDGLMTRHANALGLSCEYRWEVLDGKPRVVEHWTSDGEHFHFDYDFEARQTRVTDVLGRRAEVTYNKDRRVIASTDFGGEQYRIALDNTGNITGLTLPDGNQLGFEYDDLSRLTAETDPLGRTTRYQHHYKTTLVKQITYPDGAVWTARYDSKGNLVAEIDALGQKTEYLNSEDGLPHTIIDATYKSKYLWWNNLAQVERFQDCSGKSTWYRYDERDQLVAVTDALNNTTTLKRKPGGEVLSINHPDGTRESFTYNAHGQVLTHTNGKDQTTHLARNARGLPIRRQDPKGLIVGYQYDKALRLAALINENDATYTFAYDDSDRLIEEKRIDQLTRRFSYNLGGHLTQVEEIGYSEKGERPQRSTHFERDPVGRLLARLNDDARQDFTYDDSDRLLSIQRTPTDGGRKLGVTAEKLEFAYDILGRLTQESSPQGALTYDYDPLSNLTTLTLPTGQHLNHLYYGSGHLHQLNLDGQLISAPTDGGRKLGVTAEKLEFAYDILGRLTQESSPQGALTYDYDPLSNLTTLTLPTGQHLNHLYYGSGHLHQLNLDGQLISDMERDDLHREIYRTQGKLTSCFGYDALGRKTWQYATTLPAEKLSQIQNPLIKPERYVEHAYNPLHRRYEYDPAGELSRTLDKLRGEVTYEYEANGRLLEHNPEKRFDGEEFRYDAAGNRLNFNTSRFDRVKDNRLKKWSNHEYKYDAWGNLVEKIVGIVRWQTFTYDSENRLVKTETMANSQVESTSSYQYDSLGRRVAKQSDIKGQTDHRLFLWQGLRLLREESPGQSSLYLYEPGSYAPLARVDEKEGEVENKVYYFHTDQIGTPLEMTDAEGQIVWQAKYRPWGAVEKLVVNEVEQNLRFQGQYFDVETGLHYNTFRYYDPEIGRFITQDPIGLSGGDNLYQYAPNPNGWVDPLGWCVNASVTRGTAGQPLRATATITMADIKKGGTATNASSRSWARSLGNPDDDAGHIIAKLLGGSGGKDGVFPQLSRTNRGLFRDFEGEIANYVKTNGPVDVDIRFVYGSSNTRPSKILYDVYQNGHTVLSDMFNN

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Crispr_ID: NZ_CP005969_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP005969_9

5680533-5680644

Orphan

Consensus_repeat	Method
CCCACGCTGGAGCGTGAGGAACGATAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP005969_9

>merge|NZ_CP005969|9|5680533-5680644|CRISPRCasFinder
CCCACGCTGGAGCGTGAGGAACGATAGCCGTCAGGAAGATCGCGGAACGGGTAGCGCGCGAGGTGTCCGGGCAAACACCATCGTACCCATGCTGGAGCGTGAGGAACGATAG

>NZ_CP005969|9|9|5680533-5680644|CRISPRCasFinder
CCCACGCTGGAGCGTGAGGAACGATAG	CCGTCAGGAAGATCGCGGAACGGGTAGCGCGCGAGGTGTCCGGGCAAACACCATCGTA
CCCATGCTGGAGCGTGAGGAACGATAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP005969.1\|WP_003405246.1\|5686974_5687805_+\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226643
NZ_CP005969.1\|WP_002555720.1\|5671100_5672186_+\|nitrogen-regulation-protein-NR(II)	unknown	unknown	gnl\|CDD\|226370
NZ_CP005969.1\|WP_003405230.1\|5669652_5670189_+\|DUF4124-domain-containing-protein	unknown	unknown	gnl\|CDD\|379230
NZ_CP005969.1\|WP_148561949.1\|5677434_5679750_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP005969.1\|WP_011269246.1\|5675026_5675962_-\|sulfonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|236929
NZ_CP005969.1\|WP_003405228.1\|5669017_5669575_+\|chorismate-mutase	unknown	unknown	gnl\|CDD\|236441
NZ_CP005969.1\|WP_003343817.1\|5667447_5668854_+\|glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|181884
NZ_CP005969.1\|WP_003405235.1\|5672182_5673619_+\|nitrogen-regulation-protein-NR(I)	unknown	unknown	gnl\|CDD\|273818
NZ_CP005969.1\|WP_003426913.1\|5673907_5674945_-\|L-glyceraldehyde-3-phosphate-reductase	unknown	unknown	gnl\|CDD\|381376
NZ_CP005969.1\|WP_032655842.1\|5691063_5692440_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182566
NZ_CP005969.1\|WP_003405243.1\|5680668_5682663_-\|choline-BCCT-transporter-BetT	unknown	unknown	gnl\|CDD\|236635
NZ_CP005969.1\|WP_032655843.1\|5692455_5693661_+\|imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478
NZ_CP005969.1\|WP_032655840.1\|5676074_5677400_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274819
NZ_CP005969.1\|WP_032655844.1\|5693672_5694473_+\|N-formylglutamate-deformylase	unknown	unknown	gnl\|CDD\|131072
NZ_CP005969.1\|WP_003343849.1\|5686126_5686978_+\|proline/glycine-betaine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226644
NZ_CP005969.1\|WP_003405245.1\|5685084_5686053_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270359
NZ_CP005969.1\|WP_011269245.1\|5670185_5670818_+\|DUF4124-domain-containing-protein	unknown	unknown	gnl\|CDD\|379230
NZ_CP005969.1\|WP_032620472.1\|5683273_5684971_+\|urocanate-hydratase	unknown	unknown	gnl\|CDD\|235448
NZ_CP005969.1\|WP_003405248.1\|5687817_5689359_+\|histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|225533
NZ_CP005969.1\|WP_032655841.1\|5689413_5690961_+\|histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236484

Protein	Function_ID	Function_description	E-value
NZ_CP005969.1\|WP_003405246.1\|5686974_5687805_+\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226643	COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism].	4.69661e-170
NZ_CP005969.1\|WP_002555720.1\|5671100_5672186_+\|nitrogen-regulation-protein-NR(II)	gnl\|CDD\|226370	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].	1.6754e-166
NZ_CP005969.1\|WP_003405230.1\|5669652_5670189_+\|DUF4124-domain-containing-protein	gnl\|CDD\|379230	pfam13511, DUF4124, Domain of unknown function (DUF4124). This presumed domain is found in a variety of bacterial proteins. It is found associated at the N-terminus associated with other domains such as the SLT domain and glutaredoxin domains in some proteins. The function of this domain is unknown, but it may have an Ig-like fold.	1.10674e-11
NZ_CP005969.1\|WP_148561949.1\|5677434_5679750_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.53382e-62
NZ_CP005969.1\|WP_011269246.1\|5675026_5675962_-\|sulfonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|236929	PRK11553, PRK11553, alkanesulfonate transporter substrate-binding subunit; Provisional.	0
NZ_CP005969.1\|WP_003405228.1\|5669017_5669575_+\|chorismate-mutase	gnl\|CDD\|236441	PRK09269, PRK09269, chorismate mutase; Provisional.	7.99693e-72
NZ_CP005969.1\|WP_003343817.1\|5667447_5668854_+\|glutamate--ammonia-ligase	gnl\|CDD\|181884	PRK09469, glnA, glutamate--ammonia ligase.	0
NZ_CP005969.1\|WP_003405235.1\|5672182_5673619_+\|nitrogen-regulation-protein-NR(I)	gnl\|CDD\|273818	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	0
NZ_CP005969.1\|WP_003426913.1\|5673907_5674945_-\|L-glyceraldehyde-3-phosphate-reductase	gnl\|CDD\|381376	cd19150, AKR_AKR14A1, Escherichia coli L-glyceraldehyde 3-phosphate reductase (GPR/YghZ/AKR14A1) and similar proteins. Escherichia coli L-glyceraldehyde 3-phosphate reductase (GPR/YghZ), also called GAP reductase, is a founding member of aldo-keto reductase family 14 member A1 (AKR14A1). It catalyzes the stereospecific, NADPH-dependent reduction of L-glyceraldehyde 3-phosphate (L-GAP). It is also involved in the stress response as a methylglyoxal reductase which converts the toxic metabolite methylglyoxal to acetol in vitro and in vivo.	0
NZ_CP005969.1\|WP_032655842.1\|5691063_5692440_+\|amino-acid-permease	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
NZ_CP005969.1\|WP_003405243.1\|5680668_5682663_-\|choline-BCCT-transporter-BetT	gnl\|CDD\|236635	PRK09928, PRK09928, choline transport protein BetT; Provisional.	0
NZ_CP005969.1\|WP_032655843.1\|5692455_5693661_+\|imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
NZ_CP005969.1\|WP_032655840.1\|5676074_5677400_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274819	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP005969.1\|WP_032655844.1\|5693672_5694473_+\|N-formylglutamate-deformylase	gnl\|CDD\|131072	TIGR02017, hutG_amidohyd, N-formylglutamate amidohydrolase. In some species, histidine is converted to via urocanate and then formimino-L-glutamate to glutamate in four steps, where the fourth step is conversion of N-formimino-L-glutamate to L-glutamate and formamide. In others, that pathway from formimino-L-glutamate may differ, with the next enzyme being formiminoglutamate hydrolase (HutF) yielding N-formyl-L-glutamate. This model represents the enzyme N-formylglutamate deformylase, also called N-formylglutamate amidohydrolase, which then produces glutamate. [Energy metabolism, Amino acids and amines].	5.56476e-142
NZ_CP005969.1\|WP_003343849.1\|5686126_5686978_+\|proline/glycine-betaine-ABC-transporter-permease	gnl\|CDD\|226644	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism].	1.03195e-130
NZ_CP005969.1\|WP_003405245.1\|5685084_5686053_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270359	cd13641, PBP2_HisX_like, Substrate-binding domain of ABC-type histidine transporter involves in betaine and proline uptake; the type 2 periplasmic-binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to certain quaternary ammonium compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine, proline betaine, choline, and carnitine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.39912e-107
NZ_CP005969.1\|WP_011269245.1\|5670185_5670818_+\|DUF4124-domain-containing-protein	gnl\|CDD\|379230	pfam13511, DUF4124, Domain of unknown function (DUF4124). This presumed domain is found in a variety of bacterial proteins. It is found associated at the N-terminus associated with other domains such as the SLT domain and glutaredoxin domains in some proteins. The function of this domain is unknown, but it may have an Ig-like fold.	3.93086e-08
NZ_CP005969.1\|WP_032620472.1\|5683273_5684971_+\|urocanate-hydratase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0
NZ_CP005969.1\|WP_003405248.1\|5687817_5689359_+\|histidine-ammonia-lyase	gnl\|CDD\|225533	COG2986, HutH, Histidine ammonia-lyase [Amino acid transport and metabolism].	0
NZ_CP005969.1\|WP_032655841.1\|5689413_5690961_+\|histidine-ammonia-lyase	gnl\|CDD\|236484	PRK09367, PRK09367, histidine ammonia-lyase; Provisional.	0

>NZ_CP005969.1|WP_148561949.1|5677434_5679750_-|TonB-dependent-receptor
MRIALSDQGIFQVGTQMHTTGGDSVRHTLLAQAIDQAHTARGRRCGWLLMGLTALPCVPAMAETAAGQNTETVALESVTVTATRREESLQKVPVAVSVIEGEQLERDNRNGVASIVQQVPSLNFRTGASNKDTSLFVRGVGTISTSPGVEPTVATVIDGVVYARPGQATLDLLDLERIEVLRGPQGTLFGKNASAGVLNVTTKAPTEATHGYIDQSYYSGNESRTRFGIGGSLIPQTLKGSITTLFGSYDGNVDNKLNGQEVNGYNRKGARGKLEFTPNDDITFTLAADYMQSHDDAPNGVVTKALTPSFASALAPVRADSDNRNVVSDYRSHVEDVNKGLSGQLDWQLGDYTLTSITAWRGWDNTQYQDGDRFGTVTAAFPGTEDKGDLAFNQYSQELRLASPKGRFVEYVGGLFYMHGKSDETYQRTLITPTTQDRGIADYSTTTDSYSVFGETTFNFTPDLRAIAGARWTHDDLEYDHRRVSTSATTVSGIQPATSSSGSVDEDGKSGRLGLQYDLSDSVMTYITYSRGYKGPAYNVFFNMQPRDTEALKPETSNTWEVGLKATTWNNRLTTNLAVFHSEYDNYQANFFDSVAGQVVTRLINAGSVSTEGVELDYALQATRNLKFSGALSYTKARIDSFACPAGAAASCNVDGKTLPYSPDWKSYVRADYTIPLDNGLDIELGTDYSWQSEVQYDISQNPDTRQGAYGIWNASVALADYNSGWRVALLGKNLADKSYSPMLATGGNYVYRSVPRDDERYFGVQLRKDF
>NZ_CP005969.1|WP_032655840.1|5676074_5677400_-|LLM-class-flavin-dependent-oxidoreductase
MSTTARQMKLGAFLMATGHHVAAWRHPDVPADAGLDFKHYRHVARVAQAAKFDALFVADSVAAATGDIASRMARSDHFEPLTLLSALSAVTEHIGLIATATTTYNEPYHVARKFASLDHLSGGRAGWNLVTSDAAAEAQNFGRAEHVAHAERYSRAREFHQVVTGLWDSWADDAFTRDKASGEYYDPARLHVLDHQGEHFRVKGPLNVARSPQGQPVVVQAGSSEVGRDLAAQTAEVVFTAQTSLASAQAFYADIKGRLRAFGRDADSLKIMPGVFIVVAETEALAKAKFESFQELVEPQVGVALLGRMLGNFDLSGYPLDGPLPELPLTDSGQRSRQKLLTELADQENLTLAQLGRRIAGGRGHYSLIGTPEQIADELQRWFEQGAADGFNVLVPHLPGGLEDVAQLLVPELQRRGLFRTEYEGTTLRENLGLQRPAYRF
>NZ_CP005969.1|WP_011269246.1|5675026_5675962_-|sulfonate-ABC-transporter-substrate-binding-protein
MKPFTFIAAILAFSGLFGTASADEPDTLRIGYQKGSITLVLAKENGLLEKRFPEKKIKWVEFPAGPQMLEALNIGSLDIASTGDIPPIFAQVAGADLVYIGAEPPKPQVETLLVRNESPVHSVAELKGRKVALQKGSSSHNVVLRVLNKAGLTFKDIQPIYLTPADARAAFENGSVDAWAIWDPYYSIAMSEGHSRLLANGEGLGLSGPFYTARRAFAEENAALVQQVLDELTVADGLSRSQRAESIQILARSMGLSEAVMTQYLDHRPVSPSLPITPEIVRAQQATADLFYDNHLIPKRVDIQQVVWQKP
>NZ_CP005969.1|WP_003426913.1|5673907_5674945_-|L-glyceraldehyde-3-phosphate-reductase
MTYIAAENRYEDMPYRRTGRSGLVLPALSLGLWHNFGDSTPIDTQRAMLRTAFDLGINHFDLANNYGPPYGSAEINFGRLLREDFKHYRDELIISSKAGWDMWPGPYGQGGGSRKYVLASLDQSLQRMGLDYVDIFYSHRFDPDTPLEETASALATAVQQGKALYIGISSYSGAKTREIAALLKEWKVPLLIHQPAYNLLNRWVEKDLLDATEELGAGVIAFTALAQGLLSDKYLNGVPKDARVNRPGGGSLQASHLSEQNIAHVRALNEIAQRRGQSLAQMALAWTLRDPRVTSALIGASRPEQIIENVGALKNLAFSPEELTEIDSFAVEGGINLWEKPSLAE
>NZ_CP005969.1|WP_003405235.1|5672182_5673619_+|nitrogen-regulation-protein-NR(I)
MSRSETVWIVDDDRSIRWVLEKALQQEGMTTQSFDSADGVMSRLARQQPDVIISDIRMPGASGLDLLARIREQHPRLPVIIMTAHSDLDSAVASYQGGAFEYLPKPFDVDEAVSLVKRANQHAQEQQGLDVAPTLTRTPEIIGEAPAMQEVFRAIGRLSHSNITVLINGESGTGKELVAHALHRHSPRSASPFIALNMAAIPKDLMESELFGHEKGAFTGAANLRRGRFEQADGGTLFLDEIGDMPADTQTRLLRVLADGEFYRVGGHTPVKVDVRIIAATHQNLETLVQAGKFREDLFHRLNVIRIHIPRMSDRREDIPTLAKHFLSRAAQELAVEPKLLKAETEEYLKHLPWPGNVRQLENTCRWITVMASGREVHVSDLPPELLSLPQDAAPVTNWEQALRQWADQALSRGQSSLLDSAVPTFERIMIETALKHTAGRRRDAAVLLGWGRNTLTRKIKELGMKIDGGDDDEADEG
>NZ_CP005969.1|WP_002555720.1|5671100_5672186_+|nitrogen-regulation-protein-NR(II)
MTISDALHRLLLDNLTTATILLNADLRLEYMNPAAEMLLAISGQRSHGQFISELFTESAEALSSLRQAVEQAHPFTKREAMLTALTGQTLTVDYAVTPILSKGDTLLLLEVHPRDRLLRITKEEAQLSKQETTKMLVRGLAHEIKNPLGGIRGAAQLLARELPEESLKDYTNVIIEEADRLRNLVDRMLGSNKLPSLAMTNVHEVLERVCSLVEAESQGCITLVRDYDPSIPDVLIDREQMIQAVLNIVRNAMQAISGQNELRLGRITLRTRAMRQFTIGHVRHRLVSKIEIIDNGPGIPAELQETIFYPMVSGRPDGTGLGLAITQNIISQHQGLIECDSHPGHTTFSIFLPLEQGAAST
>NZ_CP005969.1|WP_011269245.1|5670185_5670818_+|DUF4124-domain-containing-protein
MSRHTMRRLLTCLLLLLTLPAVADVYTYIDAQGNRVFTDQPRKNATRVDIAPSNNMTGTPPTRTLKAHPAKPAVQPMFHYQLLRILVPEPDATLVNPSGDLIVTVTSEPVLQAGHSYRLLLDNVAVGQAGRSPVFPLSNVDRGTHQLSVEIFDELGRVLEKTPNQPFHVQRISLAQKRATHPCKDDDYGVRPECPLKDKPEPKSSILPFF
>NZ_CP005969.1|WP_003405230.1|5669652_5670189_+|DUF4124-domain-containing-protein
MRQSLICLLLLISLPALAQIYKYTDANGNTAFSNQPPNGTKTEVVELPPLNSIETQTPSRPALNREPQPAPVAPPSQPQTAYDVLELKDLPTDEALRANNGTFIIGVKIEPRLQPTHSLQLLLDGNLYGQPSNLPRFQVVNADRGEHSFAVVVKDGERIIQQSETITLTVQRVHLGKP
>NZ_CP005969.1|WP_003405228.1|5669017_5669575_+|chorismate-mutase
MRLILATSLLTMTFMSTCFAFTAEQKPSALEPLLQAISERLTIADQVALSKWDSGKAVEDPPRELQVISAAQARAAEFKLDPDDVQRLFRAQIEANKQVQNALLAQWHAAGKAPDTVRLSLVDDIRPKLDRLQTQLLQAYADFQPLRKAETCRMQLDAALKRYQTDPIHDQALVLATADLCPAKL
>NZ_CP005969.1|WP_003343817.1|5667447_5668854_+|glutamate--ammonia-ligase
MSKSVQLIKDHDVKWIDLRFTDTKGKQQHVTMPARDALEDDFFEVGKMFDGSSIAGWKGIEASDMILLPDDETALLDPFTEEPTLVLVCDVIEPSTMQGYDRDPRAIAHRAEEYLKSTGIGDTVFVGPEPEFFIFDEVKFKSDISGSMFKIFSEQASWMTDGDVDGGNKGHRPGVKGGYFPLPPVDHDHEIRTAMCNALEEMGQTVEVHHHEVATAGQNEIGVKFNTLVKKADEVQTLKYCVHNVADAYGRTATFMPKPLYGDNGSGMHVHMSISKDGKNTFAGEGYAGLSDTALYFIGGIIKHGKALNGFTNPSTNSYKRLVPGFEAPVMLAYSARNRSASIRIPYVNSPRGRRIEARFPDPAANPYLAFAALLMAGLDGIQNKIHPGDAADKNLYDLPPEEAKEIPQVCGSLKEALEELDKGRAFLTKGGVFSDDFIDAYIELKSEEEIKVRTFVHPLEYELYYSC
>NZ_CP005969.1|WP_003405243.1|5680668_5682663_-|choline-BCCT-transporter-BetT
MSSASSSSSGMVRMNAPVFYFAASFILIFGIVVIAFPQASGEWLLAAQNWAANTVGWYYMMVMTLYLVFVVVTALSGFGKIKLGADHDEPEFSYLSWAGMLFAAGISITLFFFCVSEPLTHLLQPPQGEGGTAEAARQGMQLLFLHWGLHGWGVFAFVGMALAYFAYRHNLPLALRSALYPLIGKRINGPIGYAVDGFGIIATIFGLGADMGFGVLHLNSGLDYLFGVAHTHWIQVGLITLMMGAAILVAIAGVDKGVRVMSDINMLLACALLLFVLFAGPTQHLLNTLVQNIGDYLGALPSKSFDVYAYNEPSDWLGGWTVFYWAWWIAWAPFVGLFIARISRGRTIREFVFGVLLIPLGFTLAWMSIFGNSAIDQVLNHGMTALGQSAIDDPSMTLYLLLETYPWSKTVIAVTVFISFVFFVTSADSGTVVLSTLSAKGGNPDEDGPKWLRVFWGVATALITSGLLFSGSIDALKSAVVLTSLPFSLILLLMMWGLHKAFVMESQRKIAQLYSLAPVSGSRRGGWRQRLSQAVHYPSRDEVYRFLDQTVRPAIEEVTAVFVEKGLNVVNVPDPSNDSVTLEIGHGEERPFIYQVQMKGFFTPSFARGGMGSKQLNNRRYYRAEVHLSEGSQDYDLVGYTKEQVINDVLDQYERHMQFLHLVR
>NZ_CP005969.1|WP_032620472.1|5683273_5684971_+|urocanate-hydratase
MTENNQDLKQDWTRHREGVVRAARGTQLTAKSWLTEAPLRMLMNNLDPEVAENPNELVVYGGIGRAARNWECYDKIVESLTQLNDDETLLVQSGKPVGVFKTHSNAPRVLIANSNLVPHWASWEHFNELDAKGLAMYGQMTAGSWIYIGSQGIVQGTYETFVEAGRQHYNGNLKGRWVLTAGLGGMGGAQPLAATLAGACSLNIECQQSRIDFRIKTRYVDEQAADLDDALARIAKYTAEGKAISIALCGNAAEILPEMVRRGVRPDMVTDQTSAHDPLNGYLPKGWTWDEYRARSVSEPASVVKAAKQSMAEHVEAMLAFQQAGIPTFDYGNNIRQMAKEVGVTNAFDFPGFVPAYIRPLFCRGIGPFRWAALSGDPQDIYKTDAKVKELIPDDEHLHNWLDMARERISFQGLPARICWVGLGQRARLGLAFNEMVRSGELSAPVVIGRDHLDSGSVASPNRETESMRDGSDAVSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHSGMVIVCDGTDEAAERIARVLHNDPATGVMRHADAGYDIAIDCAREQGLNLPMIGR
>NZ_CP005969.1|WP_003405245.1|5685084_5686053_+|ABC-transporter-substrate-binding-protein
MNMKKALLTTLVSAGLLASAGASQAAGWCESGKPVKFAGLNWESAMLLTDVLQVILDKGYGCTVDALPGNSIAMENALGTNDIQIFAEEWVGRSEVWNKAAAAGKVVGVGAPIVGAVEGWYVPRYVIEGDAKRKLEAKAPNLKSISDLAQYSAVFKDQEEPGKGRFYNCPAGWTCELENSEMLKSYGLESKYTNFRPGTGPALDAAILSSYKRGEPILTYYWSPTPLMGQVDLVRLEEKAGVNKTIDIKVGVSKVFHDEAPELVAILEKVNLPIDLLNQNLGRMAKERIESPKLAKIFLKEHPEVWHKWVSEDAAKKVDASL
>NZ_CP005969.1|WP_003343849.1|5686126_5686978_+|proline/glycine-betaine-ABC-transporter-permease
MFPESFTFSIANWVNDGVDSLVTQYGDVFRHISDTLLWAIVNLEGLLRMAPWWLMLMIVGGIAWHATRKIVTTLVIVGLLFLVGAVGLWDKLMQTLALMLVATIIAVLIGIPLGILSARSNRLRSVLMPLLDIMQTMPSFVYLIPVLMLFGLGKVPAIFATVIYAAPPLIRLTDLGIRQVDGEVMEAINAFGANRWQQLFGVQLPLAMPSIMAGINQTTMMALSMVVIASMIGARGLGEDVLVGIQTLNVGRGLEAGLAIVILAVVIDRITQAYGRPRHEAHK
>NZ_CP005969.1|WP_003405246.1|5686974_5687805_+|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein
MSSVEPNKIVVKNVFKIFGNRSKEALQLIQQNHSKDQVLAQTGCVVGVNDLSLSIGSGEIFVIMGLSGSGKSTLVRHFNRLIDPTSGEILVDGEDILRYDMEALRQFRRHKISMVFQSFGLLPHKTVLANVAYGLTVRGESKALCQERAQHWITTVGLKGYENKYPHQLSGGMRQRVGLARALAADTDIILMDEAFSALDPLIRAEMQDQLLELQASLHKTIVFITHDLDEAVRIGNRIAILKDGRLIQVGTPKEILHSPADDYVDRFVQRRVATL
>NZ_CP005969.1|WP_003405248.1|5687817_5689359_+|histidine-ammonia-lyase
MSRAEQIVIGEAPAGWQDVVAVARHGARLVLSDAAWARIDNAQAIVQRIVVSGERAYGVNTGLGALCNVSLQGEQLSRLSRNTLLSHACGVGTPLADEQTRAIICAAILNYSQGKSGIHRQVVEALLALLNRGITPQVPAQGSVGYLTHMAHVGIALLGIGQVSYRGQIVPAEQALNEEGLVPVILGAKDGLCLVNGTPCMTGLSCLAIADAERLSQWADVIGAMSFEALRGQLDAFDASILALKPHPGMQQVGKNLRMLLAGSDVLASSEGIRTQDALSIRSIPQVHGATRDQLAHATRQVEIELNSVTDNPLLLGTPEAFRVVSQANPHGQSVAMAADLLCMAMAELGSIAERRLDRLINPMVSGLPAFLVTQPGVNSGMMIVQYVAASLCAENRQMAQPAVVDNYVTSGLQEDHLSLGTSAALKLHKVLGNTTQILAIEYLLAAQAFEFLKTQGFGVGTGAAWRLLRERIPAYDEDRWLAPDIASSAALLKDETSLERVFQHCRDNAAGL
>NZ_CP005969.1|WP_032655841.1|5689413_5690961_+|histidine-ammonia-lyase
MTTLSAKTLNLIPGQLTLAQLRGIYLQPVSLTLDSSADRQIDDSVACVERILAENRTAYGINTGFGLLASTRIASEDLENLQRSLVLSHAAGVGQPISDELVRLIMVLKVNSLSRGFSGIRRVVIDALIALINAEVYPHIPLKGSVGASGDLAPLAHMSLVLLGEGKARYKGEWLNGVDALAAAGLQPLTLAAKEGLALLNGTQVSTAYALRGLFEGEDLFAAALTCGSLTVEAVLGSRSPFDARIHAARGQRGQIDAAACYRDLLGESSGVSESHRNCDKVQDPYSLRCQPQVMGACLTQLRQAAEVLEIEANAVSDNPLVFAAENDVISGGNFHAEPVAMAADNLALAIAEIGSLSERRISLMMDKHMSQLPPFLVANGGVNSGFMIAQVTAAALASENKALAHPHSVDSLPTSANQEDHVSMAPAAGKRLWEMAENVRGILAVEWLAACQGLDLREGLKTSPKLEQARSLLRSKVPFYEKDRFFAPDIEAASQLLSSTCLNPLVPARLLPSL
>NZ_CP005969.1|WP_032655842.1|5691063_5692440_+|amino-acid-permease
MTSQDGLKRGLSARHIRFMALGSAIGTGLFYGSASAIQQAGPAVLLAYLIGGAAVYMVMRALGEMAVHDPVSGSFSHYATRYMGPLAGFVLGWTYAFEMIIVCLADVTAFGIYMGFWFPEVPRWIWVLGIVFLIGALNLCNVKVFGETEFWLSILKVSAIVAMIVAGFGIMIFGIGSSASGSEIGISNLWAHGGFMPNGVTGLIASFAVVMFAFGGIEIIGITAGEAKDPRRSLPQAINAVPLRILLFYVLTLFVLMCIYPWPQIGTQGSPFVQIFDNLGIASAATILNIVVISAAVSAINSDIFGAGRMMYGLAREGQAPASFARVSRHGVPWMTVLVMGIALLGGVLLNYLIPKDVFLLIASLATFATVWVWLMILLTQVAMRRSMSREEAAQLKFAVPFWPYGPAAAIAFMLFIFGVLGYFPDNRAALIVGAIWIVLLLIAYAVWVKPKALNNTH
>NZ_CP005969.1|WP_032655843.1|5692455_5693661_+|imidazolonepropionase
MKTLWKNCHIASMAHGKYSIIEDAAIVTSGALIEWIGPQAELAEPEHDNCIDLDGAWVTPGLIDCHTHTVFGGNRSGEFEQRLQGVSYAEIAAAGGGIASTVRATRAASEDELYASAERRLRHLLKDGVTTVEMKSGYGLDLENERKILRVIRRLGNTQPVTVRATCLAAHALPPEYADRADDYINHICNDMLPALAAEGLVDAVDAFCEYLAFSPAQVEQVFITAGQLALPIKLHAEQLSSLGGSSLAARYKALSADHLEFMTEDDAIAMAAAGTVAVLLPGAFYFLRETQLPPMDALRKHGVPIAISTDLNPGTSPGLSLRLMLNMACTLFRMTPEEALAGVTFNAARALGMSATHGSLEVGKVADFVAWNIERPADLAYWLGGDLDKRIVRHGVESSI
>NZ_CP005969.1|WP_032655844.1|5693672_5694473_+|N-formylglutamate-deformylase
MDNVLTFKRGRIPLLISMPHAGLKLTPVVEAALVDEALSLPDTDWHIPRLYDFAAELGASTLAAEYSRFVIDLNRPADDKPMYAGATTGLFPSILFDGVPLFKDGQTPSAEERARYLQQIWTPYHQTLEQELQRMRDEFGYALLFDAHSIRGHIPHLFDGRLPDFNLGTFNGASCDPELASRMEQVCAAAKDYSHVLNGRFKGGHITRHYGNPANNIHAVQLELAQSTYMDEFVPFHYRPDLAEPTRAVLKSLLETFIAWGQERFG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP005969_8	8.1\|5633547\|59\|NZ_CP005969\|CRISPRCasFinder	5633547-5633605	59	NZ_CP005969.1	5633273-5633331	1	0.983

1. spacer 8.1|5633547|59|NZ_CP005969|CRISPRCasFinder matches to position: 5633273-5633331, mismatch: 1, identity: 0.983

ctctgcgtcgcatgcctttctggacgctccgcgtcctcttgacgacgcagagcgtcgaa	CRISPR spacer
ctctgcgtcgtatgcctttctggacgctccgcgtcctcttgacgacgcagagcgtcgaa	Protospacer
**********.************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3244561 : 3309230

Pseudomonas_phage(58.49%)

tail,integrase,tRNA,terminase,capsid

attL 3238355:3238370|attR 3253612:3253627

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3238355:3238370	attL	NA	NA	NA	NA
WP_024651057.1\|3244561_3246061_-\|tRNA	methionine--tRNA ligase	NA	NA	NA	NA
WP_003400967.1\|3246053_3246446_-	cupin domain-containing protein	NA	NA	NA	NA
WP_024642863.1\|3246779_3247745_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_003400960.1\|3247968_3248433_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_032655702.1\|3248438_3249422_-	oxidoreductase	NA	NA	NA	NA
WP_032655699.1\|3249471_3250131_-	TetR family transcriptional regulator C-terminal domain-containing protein	NA	NA	NA	NA
WP_032655696.1\|3250266_3251346_+	nitronate monooxygenase	NA	NA	NA	NA
WP_032655693.1\|3251447_3252215_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_032655690.1\|3252215_3252896_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA
WP_024651061.1\|3252899_3253988_+	molybdenum ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.0e-20	31.3
3253612:3253627	attR	NA	NA	NA	NA
WP_024660821.1\|3254077_3255148_+	DNA topoisomerase IB	A0A0G2Y4T8	Acanthamoeba_polyphaga_mimivirus	1.3e-43	33.7
WP_032655687.1\|3255587_3255932_+	hypothetical protein	NA	NA	NA	NA
WP_148561959.1\|3255946_3256195_-	hypothetical protein	A0A059VA35	Pseudomonas_phage	8.3e-23	68.8
WP_032655685.1\|3256311_3256815_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_032655681.1\|3257260_3257686_+	DUF1493 family protein	NA	NA	NA	NA
WP_032655679.1\|3257767_3259012_-	lipase/acylhydrolase	A0A059VA35	Pseudomonas_phage	1.1e-208	87.4
WP_032655676.1\|3259008_3259221_-	hypothetical protein	A0A059VK06	Pseudomonas_phage	4.0e-10	52.9
WP_032655673.1\|3259233_3259761_-	DUF2514 domain-containing protein	A0A059VF51	Pseudomonas_phage	5.6e-53	73.7
WP_032655672.1\|3259757_3260291_-	glycoside hydrolase family 19 protein	A0A059VA40	Pseudomonas_phage	6.5e-89	93.2
WP_032655669.1\|3260351_3260720_-	hypothetical protein	A0A059VFX9	Pseudomonas_phage	6.5e-32	76.8
WP_032655666.1\|3260733_3261048_-	hypothetical protein	A0A059VFX9	Pseudomonas_phage	3.2e-19	48.5
WP_032655663.1\|3261047_3262151_-	hypothetical protein	A0A059VJZ6	Pseudomonas_phage	8.5e-152	75.1
WP_032655660.1\|3262176_3262863_-	hypothetical protein	A0A2D1GNS6	Pseudomonas_phage	5.1e-38	39.5
WP_032655657.1\|3262862_3263171_-	hypothetical protein	NA	NA	NA	NA
WP_032655654.1\|3263179_3266767_-\|tail	phage tail protein	A0A2H4J8Z6	uncultured_Caudovirales_phage	0.0e+00	62.1
WP_032655652.1\|3266824_3267412_-\|tail	tail assembly protein	A0A2H4J1H0	uncultured_Caudovirales_phage	3.7e-69	70.5
WP_032655651.1\|3267466_3267814_-	hypothetical protein	A0A1B0VMC6	Pseudomonas_phage	5.2e-31	68.8
WP_032655780.1\|3267838_3268213_-	DUF2513 domain-containing protein	A0A0H4TJ44	Erysipelothrix_phage	4.3e-07	31.6
WP_005743794.1\|3268402_3268669_+	hypothetical protein	NA	NA	NA	NA
WP_148561931.1\|3268829_3269435_+	hypothetical protein	NA	NA	NA	NA
WP_032655649.1\|3269647_3270412_-	C40 family peptidase	A0A2H4J1J7	uncultured_Caudovirales_phage	1.0e-127	80.5
WP_032655646.1\|3270414_3271164_-\|tail	phage minor tail protein L	A0A2H4J4Q5	uncultured_Caudovirales_phage	7.9e-125	84.3
WP_032655643.1\|3271173_3271512_-\|tail	phage tail protein	A0A2H4JI07	uncultured_Caudovirales_phage	4.9e-50	79.5
WP_032655641.1\|3271514_3274979_-\|tail	phage tail tape measure protein	A0A1B0VMG8	Pseudomonas_phage	6.1e-188	45.8
WP_032655638.1\|3274989_3275238_-	DUF1799 domain-containing protein	A0A2H4J4F7	uncultured_Caudovirales_phage	2.0e-24	67.1
WP_032655636.1\|3275300_3275684_-\|tail	phage tail assembly chaperone	A0A2H4J9Y6	uncultured_Caudovirales_phage	2.6e-39	61.4
WP_032655632.1\|3275687_3276344_-\|tail	phage tail protein	A0A2H4J6K6	uncultured_Caudovirales_phage	6.5e-99	85.3
WP_032655629.1\|3276415_3276826_-	DUF4128 domain-containing protein	A0A2H4J130	uncultured_Caudovirales_phage	2.0e-34	54.8
WP_032655627.1\|3276822_3277479_-	hypothetical protein	A0A1B0VMI1	Pseudomonas_phage	3.1e-77	65.6
WP_032655624.1\|3277475_3277844_-	hypothetical protein	A0A1B0VRJ4	Pseudomonas_phage	2.2e-40	69.2
WP_032655621.1\|3277874_3278174_+	hypothetical protein	NA	NA	NA	NA
WP_032655618.1\|3278175_3278676_-	hypothetical protein	A0A1B0VND3	Pseudomonas_phage	1.5e-66	78.2
WP_032655615.1\|3278679_3279129_-	hypothetical protein	NA	NA	NA	NA
WP_011267976.1\|3279153_3280104_-	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	8.9e-158	88.5
WP_032655612.1\|3280116_3280845_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	2.0e-117	92.1
WP_032655609.1\|3280930_3281341_-	hypothetical protein	NA	NA	NA	NA
WP_032655608.1\|3281402_3282491_-\|capsid	minor capsid protein	A0A1B0VMF3	Pseudomonas_phage	1.0e-149	73.1
WP_032655606.1\|3282465_3283887_-	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	2.3e-218	78.8
WP_032655603.1\|3283883_3285185_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	1.6e-144	58.7
WP_032655600.1\|3285171_3285633_-	DUF2280 domain-containing protein	A0A1B0VMH2	Pseudomonas_phage	4.0e-47	74.4
WP_148561960.1\|3285664_3286270_-	hypothetical protein	A0A1B0VRJ1	Pseudomonas_phage	2.1e-88	78.9
WP_032655594.1\|3286366_3286822_+	hypothetical protein	NA	NA	NA	NA
WP_148561932.1\|3286878_3287199_+	hypothetical protein	NA	NA	NA	NA
WP_032655591.1\|3287378_3287609_-	hypothetical protein	A0A1S6UB66	Serratia_phage	6.3e-17	62.0
WP_032655584.1\|3288240_3288579_-	hypothetical protein	A0A059VJW1	Pseudomonas_phage	1.3e-34	84.8
WP_032655581.1\|3288578_3288950_-	chemotaxis protein	A0A059VK40	Pseudomonas_phage	9.8e-44	76.4
WP_032655574.1\|3289477_3290023_-	hypothetical protein	A0A0H5AWB8	Pseudomonas_phage	8.7e-65	66.9
WP_046722263.1\|3290019_3290640_-	recombination protein NinG	A0A059VA66	Pseudomonas_phage	5.8e-73	71.4
WP_032655572.1\|3290636_3291107_-	hypothetical protein	A0A2H4J106	uncultured_Caudovirales_phage	4.7e-51	61.5
WP_032655569.1\|3291103_3291901_-	hypothetical protein	A0A1B0VMD9	Pseudomonas_phage	3.5e-91	68.2
WP_032655567.1\|3291887_3292865_-	phage replication protein	A0A1B0VME0	Pseudomonas_phage	2.0e-112	70.6
WP_032655564.1\|3292898_3293321_-	phage regulatory CII family protein	A0A2D1GNM7	Pseudomonas_phage	5.5e-51	70.0
WP_032655561.1\|3293450_3293645_-	Cro/Cl family transcriptional regulator	NA	NA	NA	NA
WP_032655558.1\|3293749_3294622_+	helix-turn-helix domain-containing protein	A0A2D1GNH0	Pseudomonas_phage	9.6e-90	64.0
WP_148561933.1\|3294801_3295260_+	hypothetical protein	NA	NA	NA	NA
WP_032655555.1\|3295249_3296326_+	hypothetical protein	NA	NA	NA	NA
WP_032655552.1\|3296286_3297108_-	sce7726 family protein	A0A0U2RXY7	Escherichia_phage	1.2e-09	33.9
WP_173427835.1\|3297232_3297505_-	DUF1654 domain-containing protein	A0A2D1GND3	Pseudomonas_phage	3.5e-30	72.2
WP_148561935.1\|3297900_3298347_-	hypothetical protein	NA	NA	NA	NA
WP_024961042.1\|3298951_3299242_+	hypothetical protein	NA	NA	NA	NA
WP_032655549.1\|3299262_3299670_+	hypothetical protein	NA	NA	NA	NA
WP_032655547.1\|3299666_3299858_+	hypothetical protein	A0A1B0VMB8	Pseudomonas_phage	7.8e-13	60.3
WP_010435199.1\|3299854_3300025_+	hypothetical protein	NA	NA	NA	NA
WP_032655541.1\|3300146_3300656_+	hypothetical protein	J7I0S8	Pseudomonas_phage	7.4e-42	57.0
WP_032655538.1\|3300704_3301592_+	recombinase RecT	A0A0F6TJP0	Escherichia_coli_O157_typing_phage	5.4e-80	66.4
WP_032657940.1\|3303010_3303340_+	hypothetical protein	A0A2H4JAQ1	uncultured_Caudovirales_phage	8.2e-18	49.5
WP_148561936.1\|3303343_3303628_-	hypothetical protein	NA	NA	NA	NA
WP_012723172.1\|3303765_3304089_+	DUF190 domain-containing protein	A0A2H4J2R0	uncultured_Caudovirales_phage	1.5e-43	80.6
WP_012723171.1\|3304337_3305684_+	voltage-gated chloride channel family protein	A0A1X9I5Z9	Streptococcus_phage	7.0e-39	32.7
WP_012723170.1\|3305680_3306046_+	hypothetical protein	NA	NA	NA	NA
WP_012723169.1\|3306129_3306453_+	DUF190 domain-containing protein	NA	NA	NA	NA
WP_012723168.1\|3306495_3306762_+	hypothetical protein	NA	NA	NA	NA
WP_032657050.1\|3306865_3307207_+	hypothetical protein	NA	NA	NA	NA
WP_012723166.1\|3307280_3308564_+	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	2.5e-118	54.3
WP_012723165.1\|3308678_3309230_+	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	6.5e-92	92.6

DBSCAN-SWA_2

3753225 : 3763681

uncultured_Caudovirales_phage(75.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002553978.1\|3753225_3753897_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	8.7e-107	92.8
WP_032656838.1\|3754248_3755157_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011268261.1\|3755142_3755922_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_011268262.1\|3755938_3757240_-	MFS transporter	Q6JIH2	Burkholderia_virus	4.1e-60	36.0
WP_011268263.1\|3757474_3757867_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	3.7e-57	82.3
WP_003405065.1\|3757868_3758231_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	6.2e-35	60.0
WP_024652456.1\|3758230_3758530_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	1.6e-28	61.6
WP_011268265.1\|3758526_3758862_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	2.6e-43	77.5
WP_011268266.1\|3758858_3759860_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	8.8e-164	84.2
WP_011268267.1\|3759956_3760955_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_024652457.1\|3761005_3762400_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_032656835.1\|3762400_3763681_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	5.3e-97	45.8

DBSCAN-SWA_3

4498523 : 4507431

uncultured_Caudovirales_phage(62.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032656512.1\|4498523_4499270_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	9.2e-49	42.8
WP_032656510.1\|4499502_4499712_-	hypothetical protein	NA	NA	NA	NA
WP_032656508.1\|4499772_4500735_-	arsenic resistance protein	NA	NA	NA	NA
WP_074842884.1\|4500831_4501266_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_032656506.1\|4501280_4501730_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_032656505.1\|4501767_4502316_-	N-acetyltransferase	A0A2H4J136	uncultured_Caudovirales_phage	2.0e-61	65.9
WP_032656520.1\|4502335_4503070_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	5.7e-104	79.0
WP_032656504.1\|4503069_4503540_-	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	6.6e-53	62.8
WP_032656503.1\|4503549_4504839_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	2.4e-177	74.6
WP_032656518.1\|4504861_4505212_-	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	2.1e-32	59.5
WP_032656502.1\|4505356_4506751_-	heavy metal sensor histidine kinase	W8CYF6	Bacillus_phage	1.1e-10	20.8
WP_032656501.1\|4506747_4507431_-	heavy metal response regulator transcription factor	W8CYM9	Bacillus_phage	2.3e-30	33.9

DBSCAN-SWA_4

5389141 : 5422830

Pseudomonas_phage(57.69%)

lysis,plate,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032656582.1\|5389141_5390353_-\|tRNA	tyrosine--tRNA ligase	NA	NA	NA	NA
WP_003401947.1\|5390554_5391982_+	peptidoglycan DD-metalloendopeptidase family protein	A8ATH6	Listeria_phage	4.2e-18	44.7
WP_003401948.1\|5391985_5393080_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
WP_002551953.1\|5393142_5393493_-	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	7.4e-25	50.5
WP_011269099.1\|5393680_5394715_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_003401951.1\|5394848_5395277_+	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA
WP_032656584.1\|5395362_5396277_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_024640875.1\|5396333_5397110_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_003316306.1\|5397213_5397552_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_011269103.1\|5397673_5398321_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA
WP_003316303.1\|5398390_5399185_-	adenosylmethionine decarboxylase	NA	NA	NA	NA
WP_003401957.1\|5399427_5399850_-	OsmC family protein	NA	NA	NA	NA
WP_003401959.1\|5400051_5400696_+	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA
WP_032656586.1\|5400707_5401403_-	lipoate--protein ligase family protein	NA	NA	NA	NA
WP_032656587.1\|5401437_5402274_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.0e-68	56.2
WP_024640873.1\|5402270_5403320_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.2e-110	57.7
WP_003394873.1\|5403341_5403941_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	3.0e-74	64.7
WP_032656588.1\|5404351_5404864_-\|lysis	lysis protein	B5TK84	Pseudomonas_phage	6.1e-28	48.4
WP_032656589.1\|5404860_5405406_-	glycoside hydrolase family 19 protein	A0A2H4JHX4	uncultured_Caudovirales_phage	1.7e-68	72.8
WP_032656591.1\|5405516_5406062_-\|tail	tail fiber assembly protein	NA	NA	NA	NA
WP_032656593.1\|5406072_5407947_-	hypothetical protein	A0A077K818	Ralstonia_phage	1.7e-38	53.7
WP_010439013.1\|5407957_5408557_-	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	3.7e-85	72.4
WP_003401993.1\|5408544_5409585_-\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	5.4e-132	70.1
WP_024643159.1\|5409574_5409973_-	phage GP46 family protein	B5TK74	Pseudomonas_phage	3.4e-42	62.9
WP_032656595.1\|5409969_5410482_-\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	3.1e-64	73.8
WP_003401994.1\|5410478_5411606_-	hypothetical protein	B5TK72	Pseudomonas_phage	2.7e-113	60.2
WP_032656597.1\|5411609_5413022_-	DNA circularization N-terminal domain-containing protein	B5TK71	Pseudomonas_phage	2.3e-109	46.2
WP_032656599.1\|5413018_5415178_-\|tail	phage tail tape measure protein	U5P420	Shigella_phage	8.5e-71	40.0
WP_103360398.1\|5415177_5415384_-	hypothetical protein	NA	NA	NA	NA
WP_003316280.1\|5415308_5415605_-\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	4.3e-34	76.0
WP_011269114.1\|5415601_5415949_-\|tail	phage tail tube protein	B5TK68	Pseudomonas_phage	5.0e-42	70.4
WP_003401998.1\|5416009_5417506_-\|tail	phage tail sheath subtilisin-like domain-containing protein	B5TK67	Pseudomonas_phage	6.4e-235	80.5
WP_003401999.1\|5417524_5417713_-	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	1.8e-14	73.5
WP_003402000.1\|5417709_5418300_-	hypothetical protein	B5TK65	Pseudomonas_phage	7.0e-52	52.0
WP_011269117.1\|5418345_5418684_-	lipoprotein	A0A059VJW1	Pseudomonas_phage	1.2e-19	59.2
WP_003411734.1\|5418664_5419054_-	hypothetical protein	A0A059VK40	Pseudomonas_phage	2.3e-43	76.4
WP_024639983.1\|5419176_5420349_-	cellulase family glycosylhydrolase	NA	NA	NA	NA
WP_011269119.1\|5420360_5420546_-	Com family DNA-binding transcriptional regulator	B5TK59	Pseudomonas_phage	1.3e-12	89.5
WP_011269120.1\|5420818_5421262_-	hypothetical protein	A0A2H4J8A5	uncultured_Caudovirales_phage	4.6e-24	45.8
WP_024639984.1\|5421451_5422063_+	helix-turn-helix domain-containing protein	A0A0M4QWY1	Salmonella_phage	2.0e-49	49.2
WP_003402012.1\|5422217_5422466_+	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_003316268.1\|5422587_5422830_+	pyocin activator PrtN family protein	A0A2H4J8B4	uncultured_Caudovirales_phage	1.9e-16	51.2

DBSCAN-SWA_5

5456004 : 5531633

Bacillus_virus(16.67%)

holin,integrase,tRNA,transposase

attL 5454377:5454398|attR 5497343:5497364

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5454377:5454398	attL	NA	NA	NA	NA
WP_003394970.1\|5456004_5457030_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.8e-104	56.1
WP_002551877.1\|5457228_5457444_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_032655936.1\|5457922_5459878_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.8e-72	38.0
WP_003411788.1\|5459945_5461796_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	2.0e-36	34.7
WP_032655933.1\|5462064_5464551_+	bifunctional diguanylate cyclase/phosphodiesterase	A0A127AWB9	Bacillus_phage	8.4e-14	36.2
WP_032655961.1\|5464748_5465813_+\|integrase	site-specific integrase	W6MYA3	Pseudomonas_phage	1.4e-42	35.8
WP_032655931.1\|5466976_5467660_-	hypothetical protein	NA	NA	NA	NA
WP_116893488.1\|5468854_5469055_+	hypothetical protein	NA	NA	NA	NA
WP_032655929.1\|5469114_5470053_+	ThiF family adenylyltransferase	NA	NA	NA	NA
WP_032655926.1\|5470065_5470545_+	HIT family protein	NA	NA	NA	NA
WP_050601900.1\|5472732_5473953_+	AAA family ATPase	NA	NA	NA	NA
WP_080346784.1\|5474088_5474457_-\|transposase	transposase	E5E3P6	Burkholderia_phage	1.6e-17	46.7
WP_024693084.1\|5476397_5476904_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_032657883.1\|5477343_5478159_+	formate/nitrite transporter family protein	NA	NA	NA	NA
WP_046722367.1\|5478355_5478895_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_024659906.1\|5478908_5480204_-	M20 family metallopeptidase	NA	NA	NA	NA
WP_024639791.1\|5480515_5481601_+	FUSC family protein	NA	NA	NA	NA
WP_003402109.1\|5481611_5482073_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_024650573.1\|5482225_5483905_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_024659905.1\|5483920_5484715_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_032655811.1\|5485386_5487675_+	pyrroloquinoline quinone biosynthesis protein PqqF	A0A2H4UVM3	Bodo_saltans_virus	1.2e-17	27.6
WP_003422658.1\|5487810_5487885_+	pyrroloquinoline quinone precursor peptide PqqA	NA	NA	NA	NA
WP_024640643.1\|5487973_5488885_+	pyrroloquinoline quinone biosynthesis protein PqqB	NA	NA	NA	NA
WP_003402120.1\|5488893_5489649_+	pyrroloquinoline-quinone synthase PqqC	NA	NA	NA	NA
WP_011269164.1\|5489645_5489930_+	pyrroloquinoline quinone biosynthesis peptide chaperone PqqD	NA	NA	NA	NA
WP_032655810.1\|5489922_5491092_+	pyrroloquinoline quinone biosynthesis protein PqqE	NA	NA	NA	NA
WP_032655809.1\|5491054_5492881_+	S9 family peptidase	NA	NA	NA	NA
WP_002555565.1\|5492936_5493098_-	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA
WP_032655808.1\|5493501_5495280_-	acyl-CoA dehydrogenase C-terminal domain-containing protein	NA	NA	NA	NA
WP_011269168.1\|5495449_5496748_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_011269169.1\|5497505_5499311_-	acyl-CoA dehydrogenase C-terminal domain-containing protein	NA	NA	NA	NA
5497343:5497364	attR	NA	NA	NA	NA
WP_003419817.1\|5499644_5499941_-	hypothetical protein	NA	NA	NA	NA
WP_011269170.1\|5500094_5500775_-	dethiobiotin synthase	NA	NA	NA	NA
WP_032655807.1\|5500799_5501609_-	malonyl-ACP O-methyltransferase BioC	NA	NA	NA	NA
WP_003402140.1\|5501601_5502333_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_003402141.1\|5502325_5503516_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA
WP_003372416.1\|5503580_5504639_-	biotin synthase BioB	NA	NA	NA	NA
WP_024661091.1\|5504729_5505464_+	ComF family protein	NA	NA	NA	NA
WP_024661092.1\|5505602_5506367_+	TOBE domain-containing protein	NA	NA	NA	NA
WP_024661093.1\|5506448_5508365_+	PhoX family phosphatase	NA	NA	NA	NA
WP_024661094.1\|5508633_5509467_-	phosphodiesterase	NA	NA	NA	NA
WP_024661095.1\|5509492_5510524_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.2e-27	35.0
WP_003316181.1\|5510520_5511315_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_003402156.1\|5512125_5513127_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_032626662.1\|5513137_5514130_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_024641324.1\|5514322_5515297_+	serine/threonine protein kinase	NA	NA	NA	NA
WP_003402166.1\|5515609_5516497_+	EamA family transporter RarD	NA	NA	NA	NA
WP_011269179.1\|5516694_5517237_-	glycine cleavage system protein R	NA	NA	NA	NA
WP_024659822.1\|5517559_5519737_+	malate synthase G	NA	NA	NA	NA
WP_003402175.1\|5519802_5520249_-	response regulator	A0A220YL79	Alteromonas_virus	2.2e-05	29.6
WP_046722368.1\|5520480_5522415_+	CBS domain-containing protein	NA	NA	NA	NA
WP_024659820.1\|5522411_5523125_+	3'-5' exonuclease	A0A1P8DIX6	Virus_Rctr197k	3.5e-05	28.2
WP_003316170.1\|5523150_5523453_-	cell division protein ZapA	NA	NA	NA	NA
WP_003402183.1\|5523449_5523683_-	hypothetical protein	NA	NA	NA	NA
WP_011269183.1\|5524094_5525720_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	8.6e-68	44.6
WP_024660127.1\|5526125_5526584_-\|transposase	transposase	NA	NA	NA	NA
WP_003402189.1\|5526710_5527814_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_011269185.1\|5528597_5529545_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_170846044.1\|5529609_5530458_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_011269186.1\|5530454_5531633_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.9e-25	36.4

DBSCAN-SWA_6

5740893 : 5828267

Pseudomonas_phage(51.22%)

lysis,portal,tail,plate,integrase,tRNA,head,terminase,capsid,transposase

attL 5785488:5785502|attR 5830213:5830227

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004407330.1\|5740893_5741349_+\|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	NA	NA	NA	NA
WP_003372189.1\|5741410_5741899_-	protein-export chaperone SecB	NA	NA	NA	NA
WP_011269283.1\|5741939_5742191_-	glutaredoxin 3	V9QKN6	Rhizobium_phage	1.8e-12	39.7
WP_011269284.1\|5742193_5742607_-	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_032655857.1\|5742763_5744296_+	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
WP_024640519.1\|5744448_5745774_+	murein hydrolase activator EnvC	NA	NA	NA	NA
WP_010433148.1\|5745807_5747145_+	S41 family peptidase	A0A0R6PIZ1	Moraxella_phage	1.0e-26	29.8
WP_004407320.1\|5747148_5747931_+	divergent polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_032655858.1\|5748182_5750006_+	peptidase M60	NA	NA	NA	NA
WP_032655910.1\|5750203_5751706_+	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_004407313.1\|5751710_5752466_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002551458.1\|5752651_5753422_-	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_003372206.1\|5753441_5754179_-	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_004407310.1\|5754285_5754546_-	DUF2164 domain-containing protein	NA	NA	NA	NA
WP_003318304.1\|5754550_5755189_-	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_002551454.1\|5755188_5755782_-	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
WP_011269291.1\|5755875_5757075_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_011269292.1\|5757291_5758953_-	OFA family MFS transporter	NA	NA	NA	NA
WP_032655859.1\|5759451_5761677_+	AsmA family protein	NA	NA	NA	NA
WP_011269294.1\|5761770_5762838_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_002555777.1\|5762834_5763107_+	oxidative damage protection protein	NA	NA	NA	NA
WP_003434718.1\|5763932_5764319_+	hypothetical protein	NA	NA	NA	NA
WP_024640511.1\|5764311_5765214_+	hypothetical protein	NA	NA	NA	NA
WP_003318312.1\|5765480_5765759_+	lipoprotein	NA	NA	NA	NA
WP_032655860.1\|5766071_5767418_+	PAS domain-containing protein	NA	NA	NA	NA
WP_004407280.1\|5767561_5768047_+	hypothetical protein	NA	NA	NA	NA
WP_024660725.1\|5768104_5769496_-	GABA permease	NA	NA	NA	NA
WP_004407276.1\|5770021_5770795_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.9e-18	31.1
WP_032655861.1\|5770808_5771573_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003342249.1\|5771639_5772335_+	ABC transporter permease	NA	NA	NA	NA
WP_003318320.1\|5772331_5773021_+	ABC transporter permease	NA	NA	NA	NA
WP_032655862.1\|5773022_5774294_+	methyltransferase	NA	NA	NA	NA
WP_032655863.1\|5774590_5774917_-	hypothetical protein	NA	NA	NA	NA
WP_032655864.1\|5775353_5776370_-	J domain-containing protein	F2Y2Y5	Organic_Lake_phycodnavirus	1.1e-07	45.9
WP_173427838.1\|5776811_5776967_-	hypothetical protein	NA	NA	NA	NA
WP_032655867.1\|5777784_5778255_+	hypothetical protein	NA	NA	NA	NA
WP_046722303.1\|5778689_5779868_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_032655869.1\|5779860_5780391_+	DUF4411 family protein	NA	NA	NA	NA
WP_032655871.1\|5780368_5781370_-	hypothetical protein	A0A0U4IBV2	Pseudomonas_phage	7.8e-120	64.0
WP_032655873.1\|5781342_5782053_-	hypothetical protein	A0A2I7RNK1	Vibrio_phage	2.6e-37	38.3
WP_032655875.1\|5782049_5782580_-	hypothetical protein	A0A0U4J942	Pseudomonas_phage	2.5e-48	57.5
WP_032655877.1\|5782576_5783503_-	hypothetical protein	NA	NA	NA	NA
WP_032655879.1\|5783499_5784099_-\|tail	tail protein	B5TK82	Pseudomonas_phage	2.5e-17	41.7
WP_046722304.1\|5784099_5786544_-\|tail	phage tail protein	A0A0U4K5K2	Pseudomonas_phage	4.7e-118	59.6
5785488:5785502	attL	NA	NA	NA	NA
WP_011169814.1\|5786552_5787077_-\|tail	phage tail protein	A0A0U4JVX3	Pseudomonas_phage	2.9e-73	75.9
WP_016567695.1\|5787073_5788243_-\|plate	baseplate J/gp47 family protein	A0A0U4JJ14	Pseudomonas_phage	7.9e-156	70.5
WP_003342289.1\|5788239_5788557_-	DUF2590 family protein	A0A0U4B0N5	Pseudomonas_phage	1.3e-36	78.4
WP_032655883.1\|5788556_5790821_-\|tail	phage tail tape measure protein	A0A0U4IJ81	Pseudomonas_phage	3.1e-116	44.5
WP_003342293.1\|5790826_5790970_-	hypothetical protein	A0A0U4B0S4	Pseudomonas_phage	1.1e-14	73.9
WP_003342295.1\|5790990_5791281_-	hypothetical protein	A0A0U4B0P2	Pseudomonas_phage	1.1e-21	64.4
WP_032655885.1\|5791313_5791793_-\|lysis	lysis protein	A0A0U4JXC2	Pseudomonas_phage	7.5e-20	44.9
WP_032655886.1\|5791789_5792317_-	lysozyme	NA	NA	NA	NA
WP_003342302.1\|5792313_5792520_-	hypothetical protein	NA	NA	NA	NA
WP_032655887.1\|5792516_5792729_-	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_003342306.1\|5792728_5793181_-	DUF2597 family protein	A0A0U3TH58	Pseudomonas_phage	7.2e-57	72.8
WP_032655888.1\|5793184_5794297_-	DUF2586 family protein	A0A0U4KLE6	Pseudomonas_phage	1.7e-136	66.8
WP_032655889.1\|5794311_5794980_-	phage virion morphogenesis protein	A0A0U4ISN1	Pseudomonas_phage	3.8e-54	55.2
WP_032655890.1\|5794969_5795413_-\|tail	phage tail protein	A0A0U4IBS7	Pseudomonas_phage	6.4e-50	64.4
WP_032655892.1\|5795409_5795871_-\|head	head completion/stabilization protein	A0A0U4J933	Pseudomonas_phage	3.9e-42	57.5
WP_032703431.1\|5795906_5796200_+	hypothetical protein	NA	NA	NA	NA
WP_046722305.1\|5796301_5796598_+	hypothetical protein	NA	NA	NA	NA
WP_046722306.1\|5796696_5796996_+	hypothetical protein	NA	NA	NA	NA
WP_046722307.1\|5797133_5797856_-\|terminase	terminase	A0A0U4JEJ1	Pseudomonas_phage	1.0e-81	69.5
WP_046722308.1\|5797852_5798875_-\|capsid	phage major capsid protein, P2 family	A0A0U4K5I9	Pseudomonas_phage	2.1e-120	65.9
WP_046722309.1\|5798876_5799809_-\|capsid	GPO family capsid scaffolding protein	A0A0U4JVV6	Pseudomonas_phage	2.4e-62	56.4
WP_046722310.1\|5799970_5802025_+\|terminase	terminase	A0A0U4JIZ9	Pseudomonas_phage	7.9e-268	72.9
WP_080278024.1\|5801921_5802803_+\|portal	phage portal protein	A0A0U4B0L9	Pseudomonas_phage	1.1e-101	77.6
WP_010204973.1\|5802878_5803139_+	ogr/Delta-like zinc finger family protein	A5X9H0	Aeromonas_virus	3.9e-15	42.2
WP_158498079.1\|5803180_5803357_-	hypothetical protein	NA	NA	NA	NA
WP_080278020.1\|5803458_5803977_-	helix-turn-helix transcriptional regulator	A0A2H4JFL3	uncultured_Caudovirales_phage	3.2e-16	45.5
WP_032655901.1\|5803893_5804094_+	DNA-binding protein	A0A2H4JE67	uncultured_Caudovirales_phage	1.1e-09	50.8
WP_032655903.1\|5804093_5804603_+	hypothetical protein	A0A2H4JG61	uncultured_Caudovirales_phage	3.2e-45	58.3
WP_046722312.1\|5804599_5804932_+	hypothetical protein	NA	NA	NA	NA
WP_032656516.1\|5805156_5806233_-	hypothetical protein	NA	NA	NA	NA
WP_032656514.1\|5806867_5808418_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	2.6e-90	39.1
WP_032656512.1\|5808414_5809161_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	9.2e-49	42.8
WP_032656510.1\|5809393_5809603_-	hypothetical protein	NA	NA	NA	NA
WP_032656508.1\|5809663_5810626_-	arsenic resistance protein	NA	NA	NA	NA
WP_074842884.1\|5810722_5811157_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_032656506.1\|5811171_5811621_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_032656505.1\|5811658_5812207_-	N-acetyltransferase	A0A2H4J136	uncultured_Caudovirales_phage	2.0e-61	65.9
WP_032656520.1\|5812226_5812961_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	5.7e-104	79.0
WP_032656504.1\|5812960_5813431_-	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	6.6e-53	62.8
WP_032656503.1\|5813440_5814730_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	2.4e-177	74.6
WP_032656518.1\|5814752_5815103_-	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	2.1e-32	59.5
WP_032656502.1\|5815247_5816642_-	heavy metal sensor histidine kinase	W8CYF6	Bacillus_phage	1.1e-10	20.8
WP_032656501.1\|5816638_5817322_-	heavy metal response regulator transcription factor	W8CYM9	Bacillus_phage	2.3e-30	33.9
WP_032656500.1\|5817606_5818053_+	DUF411 domain-containing protein	NA	NA	NA	NA
WP_032656499.1\|5818104_5819040_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_032656498.1\|5819042_5819426_-	copper homeostasis periplasmic binding protein CopC	NA	NA	NA	NA
WP_032656497.1\|5819495_5820437_-	copper resistance protein B	NA	NA	NA	NA
WP_032656496.1\|5820447_5822304_-	copper resistance system multicopper oxidase	NA	NA	NA	NA
WP_032656495.1\|5822446_5822650_-	hypothetical protein	NA	NA	NA	NA
WP_032657380.1\|5823258_5823498_+	hypothetical protein	NA	NA	NA	NA
WP_032657383.1\|5823494_5826188_+	toprim domain-containing protein	Q9ZXI8	Pseudomonas_virus	7.1e-301	57.5
WP_005737207.1\|5826212_5826515_+	hypothetical protein	NA	NA	NA	NA
WP_032657386.1\|5826599_5826833_+	hypothetical protein	NA	NA	NA	NA
WP_005737208.1\|5826909_5827122_+	hypothetical protein	NA	NA	NA	NA
WP_032657389.1\|5827118_5828267_+\|integrase	integrase	V9IQN0	Stenotrophomonas_phage	2.2e-73	40.7
5830213:5830227	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP005969

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection