CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP014707	Salmonella enterica subsp. enterica serovar Anatum strain USMARC-1735 plasmid pSAN1-1735, complete sequence	0 crisprs	DEDDh	0	0	1	0
NZ_CP007584	Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1735 isolate SAN2113-2 chromosome, complete genome	3 crisprs	PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	0	5	10	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 100917

113

Salmonella_phage(92.16%)

terminase,portal,integrase,tail

attL 13833:13848|attR 24697:24712

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_176547638.1\|0_1218_+	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	2.2e-76	45.6
WP_063592800.1\|1781_1994_-	hypothetical protein	J9Q7S8	Salmonella_phage	5.1e-29	85.7
WP_063592801.1\|1993_2329_-	hypothetical protein	J9Q7Z5	Salmonella_phage	1.2e-51	91.9
WP_063592802.1\|2325_2505_-	hypothetical protein	J9Q6J1	Salmonella_phage	3.1e-19	91.5
WP_063592803.1\|2545_2821_-	hypothetical protein	J9Q738	Salmonella_phage	1.9e-44	93.4
WP_063592804.1\|2888_3299_-	hypothetical protein	J9Q7G9	Salmonella_phage	5.9e-74	95.6
WP_023221824.1\|3282_3654_-	DUF2591 domain-containing protein	J9Q7S7	Salmonella_phage	8.8e-61	87.8
WP_063592805.1\|3650_4385_-	hypothetical protein	G4KK93	Yersinia_phage	5.0e-23	30.8
WP_063592806.1\|4460_5285_-	hypothetical protein	A0A0U4IID7	Pseudomonas_phage	2.7e-17	25.8
WP_046594026.1\|5380_6211_-	SPFH domain-containing protein	J9Q7Z4	Salmonella_phage	1.3e-123	95.7
WP_063592899.1\|6210_6414_-	hypothetical protein	J9Q6J0	Salmonella_phage	4.9e-13	67.7
WP_063592808.1\|7581_7848_-	hypothetical protein	J9Q7G8	Salmonella_phage	1.2e-38	94.3
WP_063592809.1\|7847_8792_-	exonuclease	J9Q7S6	Salmonella_phage	3.0e-174	93.9
WP_063592810.1\|8852_9890_-	hypothetical protein	J9Q7Z3	Salmonella_phage	1.6e-155	93.6
WP_063592811.1\|10007_10439_-	hypothetical protein	J9Q6I8	Salmonella_phage	2.8e-66	90.9
WP_063592812.1\|10575_14097_-	DNA polymerase III subunit alpha	J9Q7Z2	Salmonella_phage	0.0e+00	94.4
13833:13848	attL	NA	NA	NA	NA
WP_063592813.1\|14277_15510_-	AAA family ATPase	J9Q733	Salmonella_phage	1.5e-218	90.8
WP_063592814.1\|15605_17930_-	porphyrin biosynthesis protein	J9Q7G6	Salmonella_phage	1.8e-284	78.6
WP_063592815.1\|18035_18248_-	hypothetical protein	NA	NA	NA	NA
WP_063592816.1\|18510_18897_+	hypothetical protein	NA	NA	NA	NA
WP_063592817.1\|18888_19995_-\|integrase	site-specific integrase	A0A1P8DTG6	Proteus_phage	5.2e-24	31.7
WP_063592818.1\|20202_20775_+	hypothetical protein	NA	NA	NA	NA
WP_063592819.1\|21027_21276_-	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	3.0e-12	45.2
WP_063592820.1\|21285_22059_-	phosphate starvation-inducible protein PhoH	W8D063	Erwinia_phage	1.6e-88	64.2
WP_140439919.1\|22300_23485_+	hypothetical protein	NA	NA	NA	NA
WP_171995759.1\|24896_25055_-	hypothetical protein	NA	NA	NA	NA
24697:24712	attR	NA	NA	NA	NA
WP_063592822.1\|25261_25564_-	hypothetical protein	J9Q7S1	Salmonella_phage	4.0e-35	78.6
WP_063592823.1\|25551_25713_-	hypothetical protein	J9Q7Z1	Salmonella_phage	3.7e-08	60.0
WP_063592824.1\|25709_25925_-	hypothetical protein	J9Q6I3	Salmonella_phage	5.5e-23	72.9
WP_176547637.1\|25908_26088_-	hypothetical protein	J9Q729	Salmonella_phage	1.9e-16	75.9
WP_063592825.1\|26084_27407_-	DNA ligase	J9Q7G5	Salmonella_phage	2.6e-232	88.4
WP_023222375.1\|27441_27918_-	hypothetical protein	J9Q7R9	Salmonella_phage	2.1e-78	96.2
WP_063592826.1\|27999_28794_-	hypothetical protein	J9Q7Z0	Salmonella_phage	2.9e-133	91.3
WP_063592827.1\|28874_29990_-	toprim domain-containing protein	J9Q720	Salmonella_phage	2.9e-208	93.0
WP_063592828.1\|30123_31464_-	AAA family ATPase	J9Q7G4	Salmonella_phage	2.8e-242	96.6
WP_063592829.1\|31514_32249_-	hypothetical protein	J9Q7R8	Salmonella_phage	6.7e-129	91.2
WP_171995805.1\|32452_32806_-	hypothetical protein	J9Q7G3	Salmonella_phage	1.9e-44	97.9
WP_063592831.1\|32811_33477_-	AAA family ATPase	J9Q7R7	Salmonella_phage	1.2e-108	90.5
WP_063592832.1\|33780_34035_-	hypothetical protein	J9Q7R6	Salmonella_phage	2.5e-22	71.6
WP_063592833.1\|34034_34727_-	hypothetical protein	J9Q7Y7	Salmonella_phage	2.0e-122	90.9
WP_063592834.1\|34740_35064_-	hypothetical protein	J9Q6E7	Salmonella_phage	5.3e-38	78.5
WP_063592901.1\|35133_35700_-	recombinase family protein	A0A1S6L009	Salmonella_phage	1.1e-89	90.7
WP_078097290.1\|36235_36934_+\|tail	phage tail protein	A0A1C9II89	Salmonella_phage	3.0e-62	55.6
WP_078097291.1\|37014_37470_+\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	2.0e-59	74.3
WP_063592836.1\|37473_37992_-\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	5.9e-47	52.6
WP_071925175.1\|38006_39632_-\|tail	tail fiber protein	A0A1B0VFW4	Salmonella_phage	9.0e-142	62.6
WP_063592837.1\|45612_46206_-\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	2.2e-98	91.4
WP_063592838.1\|46193_46991_-	C40 family peptidase	J9Q7R4	Salmonella_phage	1.2e-147	90.2
WP_063592839.1\|46980_47682_-\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	3.0e-126	89.7
WP_063592840.1\|47769_48105_-\|tail	phage tail protein	J9Q6E1	Salmonella_phage	4.0e-52	84.5
WP_063592841.1\|48144_52734_-	tape measure protein	J9Q712	Salmonella_phage	0.0e+00	83.6
WP_171995754.1\|52741_52966_-	hypothetical protein	J9Q7F7	Salmonella_phage	2.1e-33	97.3
WP_063592843.1\|53091_53409_-	hypothetical protein	J9Q7R3	Salmonella_phage	3.3e-48	96.2
WP_063592844.1\|53458_54205_-	Ig domain-containing protein	J9Q7Y4	Salmonella_phage	1.3e-119	91.5
WP_063592845.1\|54277_54661_-	hypothetical protein	J9Q6D8	Salmonella_phage	2.9e-59	83.5
WP_063592846.1\|54662_55136_-	hypothetical protein	J9Q711	Salmonella_phage	8.6e-77	92.4
WP_063592847.1\|55126_55471_-	hypothetical protein	J9Q7F6	Salmonella_phage	4.3e-54	90.4
WP_063592848.1\|55568_56402_-	hypothetical protein	J9Q7R2	Salmonella_phage	7.4e-140	89.9
WP_063592849.1\|56401_56836_-	hypothetical protein	J9Q7Y3	Salmonella_phage	9.3e-62	82.6
WP_071925170.1\|56875_57538_-	Ig domain-containing protein	J9Q6D6	Salmonella_phage	1.1e-77	69.1
WP_063592850.1\|57612_58494_-	hypothetical protein	J9Q710	Salmonella_phage	1.2e-148	91.1
WP_063592851.1\|58519_59416_-	hypothetical protein	J9Q7F4	Salmonella_phage	1.4e-139	90.6
WP_063592852.1\|59438_61004_-\|portal	phage portal protein	J9Q7R1	Salmonella_phage	3.2e-277	90.6
WP_063592853.1\|61036_62293_-\|terminase	terminase	J9Q7Y2	Salmonella_phage	3.4e-245	96.9
WP_063592854.1\|62295_62937_-	hypothetical protein	J9Q6D4	Salmonella_phage	1.8e-101	92.5
WP_023221759.1\|63130_63397_-	hypothetical protein	J9Q757	Salmonella_phage	7.3e-41	96.6
WP_063592855.1\|63406_64297_-	hypothetical protein	J9Q7I6	Salmonella_phage	4.1e-165	97.0
WP_063592856.1\|64302_64557_-	hypothetical protein	J9Q7U0	Salmonella_phage	2.3e-36	85.7
WP_063592857.1\|64549_65188_-	ATP-binding cassette domain-containing protein	J9Q807	Salmonella_phage	5.2e-109	97.6
WP_063592858.1\|65184_65853_-	ParB N-terminal domain-containing protein	J9Q6L1	Salmonella_phage	1.2e-113	98.2
WP_063592859.1\|65852_66551_-	ParB N-terminal domain-containing protein	J9Q756	Salmonella_phage	3.6e-124	97.8
WP_063592860.1\|66615_68175_+	DEAD/DEAH box helicase	J9Q7I4	Salmonella_phage	2.0e-284	95.8
WP_063592861.1\|68177_68456_+	hypothetical protein	J9Q7T9	Salmonella_phage	1.2e-33	85.7
WP_140439922.1\|68518_69055_+	hypothetical protein	NA	NA	NA	NA
WP_063592863.1\|69099_69888_-	hypothetical protein	A0A0M4QWT0	Salmonella_phage	5.9e-06	32.9
WP_063592864.1\|70012_70534_+	hypothetical protein	J9Q6L0	Salmonella_phage	3.2e-56	70.3
WP_063592865.1\|70852_71503_+	hypothetical protein	J9Q754	Salmonella_phage	9.9e-100	85.2
WP_063592866.1\|71553_71757_+	hypothetical protein	J9Q7I3	Salmonella_phage	1.6e-24	86.6
WP_063592867.1\|72388_72871_-	hypothetical protein	J9Q805	Salmonella_phage	1.0e-77	88.1
WP_140439921.1\|73075_73336_-	hypothetical protein	NA	NA	NA	NA
WP_063592868.1\|73350_73632_-	hypothetical protein	J9Q753	Salmonella_phage	1.1e-39	82.8
WP_063592869.1\|73624_73867_-	hypothetical protein	NA	NA	NA	NA
WP_063592870.1\|73994_74390_-	hypothetical protein	J9Q7I1	Salmonella_phage	6.8e-35	53.8
WP_176547642.1\|74510_74810_-	hypothetical protein	J9Q7T7	Salmonella_phage	2.9e-30	69.7
WP_176547641.1\|74960_75176_-	hypothetical protein	J9Q804	Salmonella_phage	3.1e-26	82.4
WP_063592872.1\|76965_77283_-	hypothetical protein	J9Q750	Salmonella_phage	4.0e-46	81.0
WP_063592873.1\|77276_77519_-	hypothetical protein	J9Q7H8	Salmonella_phage	4.1e-35	87.0
WP_063592874.1\|77756_78326_+	hypothetical protein	Q71TH9	Escherichia_phage	2.2e-74	69.5
WP_063592875.1\|78360_78573_+	hypothetical protein	NA	NA	NA	NA
WP_063592876.1\|78787_79063_-	DUF1456 family protein	NA	NA	NA	NA
WP_063592877.1\|79107_79533_-	hypothetical protein	NA	NA	NA	NA
WP_071925173.1\|79617_79788_-	DUF2737 family protein	Q5G8U5	Enterobacteria_phage	1.3e-24	98.2
WP_063592878.1\|80030_80402_-	hypothetical protein	J9Q7T4	Salmonella_phage	4.9e-35	60.2
WP_063592879.1\|80460_82146_-	DUF4942 domain-containing protein	J9Q747	Salmonella_phage	2.0e-309	89.8
WP_063592880.1\|82262_82832_-	hypothetical protein	J9Q7H6	Salmonella_phage	7.0e-57	61.6
WP_071925174.1\|83014_83509_-	hypothetical protein	J9Q6J9	Salmonella_phage	2.7e-41	57.9
WP_063592882.1\|83652_84258_-	ribonuclease HI	J9Q745	Salmonella_phage	1.4e-92	80.2
WP_063592883.1\|84842_85070_-	hypothetical protein	J9Q7H5	Salmonella_phage	6.6e-27	80.3
WP_063592884.1\|86034_86829_-	hypothetical protein	J9Q7Z9	Salmonella_phage	2.7e-67	63.6
WP_063592885.1\|86955_87513_-	3'-5' exonuclease	J9Q6J8	Salmonella_phage	3.0e-89	85.2
WP_063592886.1\|87522_87942_-	hypothetical protein	J9Q743	Salmonella_phage	7.4e-56	82.7
WP_063592887.1\|88004_88649_-	AAA family ATPase	J9Q7H4	Salmonella_phage	4.0e-101	84.6
WP_063592888.1\|88648_89125_-	dihydrofolate reductase	J9Q7T1	Salmonella_phage	3.3e-84	91.1
WP_063592889.1\|89121_89535_-	hypothetical protein	J9Q7Z8	Salmonella_phage	2.3e-62	87.6
WP_063592890.1\|89536_90640_-	thymidylate synthase	J9Q6J6	Salmonella_phage	1.4e-207	93.7
WP_063592891.1\|90830_91706_-	phosphoribosyl-ATP pyrophosphohydrolase	J9Q742	Salmonella_phage	4.5e-140	85.1
WP_063592892.1\|91785_92928_-	ribonucleotide-diphosphate reductase subunit beta	J9Q7H3	Salmonella_phage	5.6e-207	93.9
WP_063592893.1\|93045_95355_-	ribonucleoside-diphosphate reductase subunit alpha	J9Q7T0	Salmonella_phage	0.0e+00	93.4
WP_063592894.1\|95432_96002_-	hypothetical protein	J9Q7Z7	Salmonella_phage	2.3e-100	96.8
WP_176547640.1\|96013_96718_-	hypothetical protein	J9Q6J5	Salmonella_phage	1.5e-69	59.3
WP_063592896.1\|96743_98660_-	AAA family ATPase	J9Q741	Salmonella_phage	7.8e-302	85.1
WP_063592897.1\|98889_99975_-	exonuclease SbcCD subunit D	J9Q7S9	Salmonella_phage	1.4e-199	94.5
WP_063592906.1\|100272_100917_-	hypothetical protein	J9Q739	Salmonella_phage	3.8e-112	90.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP007584

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007584_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007584_1

654169-654580

Orphan

Consensus_repeat	Method
GTCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTATCACCTCTTCATAAAACCCG	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP007584_1

>merge|NZ_CP007584|1|654169-654580|PILER-CR
GTCCACGACGCTATACCCGAAAGAAAGCGGCTTATCGGTCAGTATCATCTCTTCATAAAACCCGTCAGTGTAAGCTGGCGGGTTTTTGCTTTTACAGGGCGGCAGGATGAATGACCGTCCACGACGCTATACCCGAAAGAAAGCGGCTTATCGGTCAGTATCATCTCTTCATAAAACCCGTCAGTGTAAGCTGGCGGGTTTTTGCTTTTACAGGGCGGCAGGATGAATGACTGTCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTCTTCATAAAATCCGTCAGTGTAAGCTGGCGGGTTTATGCTTTTACCGGGCGACAGGATGAATGACTGTCCACGACGCTATACCCAAAAGAAAGCGGCTTATAGGTCAGTTTCACCTCTTCATAAAACCCG

>NZ_CP007584|1|1|654169-654580|PILER-CR
GTCCACGACGCTATACCCGAAAGAAAGCGGCTTATCGGTCAGTATCATCTCTTCATAAAACCCG	TCAGTGTAAGCTGGCGGGTTTTTGCTTTTACAGGGCGGCAGGATGAATGACC
GTCCACGACGCTATACCCGAAAGAAAGCGGCTTATCGGTCAGTATCATCTCTTCATAAAACCCG	TCAGTGTAAGCTGGCGGGTTTTTGCTTTTACAGGGCGGCAGGATGAATGACT
GTCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTCTTCATAAAATCCG	TCAGTGTAAGCTGGCGGGTTTATGCTTTTACCGGGCGACAGGATGAATGACT
GTCCACGACGCTATACCCAAAAGAAAGCGGCTTATAGGTCAGTTTCACCTCTTCATAAAACCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007584.2\|WP_023244049.1\|658721_659930_+\|propionate-kinase	unknown	unknown	gnl\|CDD\|183484
NZ_CP007584.2\|WP_000039327.1\|666787_666952_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007584.2\|WP_000490601.1\|643998_645372_-\|PTS-galactitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226298
NZ_CP007584.2\|WP_000178106.1\|651569_652460_+\|2-hydroxy-3-oxopropionate-reductase	unknown	unknown	gnl\|CDD\|183197
NZ_CP007584.2\|WP_000080445.1\|645690_646155_-\|PTS-galactitol-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|182023
NZ_CP007584.2\|WP_000548370.1\|656313_657303_+\|bifunctional-threonine-ammonia-lyase/L-serine-ammonia-lyase-TdcB	unknown	unknown	gnl\|CDD\|236317
NZ_CP007584.2\|WP_000844173.1\|642911_643955_-\|galactitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|182371
NZ_CP007584.2\|WP_000463066.1\|665364_666675_+\|serine-dehydratase-subunit-alpha-family-protein	unknown	unknown	gnl\|CDD\|226206
NZ_CP007584.2\|WP_023244048.1\|659963_662258_+\|formate-C-acetyltransferase	unknown	unknown	gnl\|CDD\|153087
NZ_CP007584.2\|WP_000633549.1\|666975_667677_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP007584.2\|WP_000443187.1\|664007_665339_+\|HAAAP-family-serine/threonine-permease	unknown	unknown	gnl\|CDD\|273283
NZ_CP007584.2\|WP_000706458.1\|652557_653703_+\|glycerate-2-kinase	unknown	unknown	gnl\|CDD\|182392
NZ_CP007584.2\|WP_046722513.1\|655277_656216_+\|transcriptional-regulator-TdcA	unknown	unknown	gnl\|CDD\|182391
NZ_CP007584.2\|WP_000658736.1\|646169_647441_-\|tagatose-bisphosphate-aldolase-subunit-GatZ	unknown	unknown	gnl\|CDD\|237889
NZ_CP007584.2\|WP_000622071.1\|662327_663692_+\|L-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|185000
NZ_CP007584.2\|WP_001057715.1\|650773_651544_+\|2-dehydro-3-deoxyglucarate-aldolase	unknown	unknown	gnl\|CDD\|182547
NZ_CP007584.2\|WP_000469979.1\|647560_648415_-\|tagatose-bisphosphate-family-class-II-aldolase	unknown	unknown	gnl\|CDD\|181690
NZ_CP007584.2\|WP_046722514.1\|648672_650244_-\|galactarate-dehydratase	unknown	unknown	gnl\|CDD\|274491
NZ_CP007584.2\|WP_000824293.1\|645375_645660_-\|PTS-galactitol-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|182372
NZ_CP007584.2\|WP_000108129.1\|657323_658655_+\|threonine/serine-transporter-TdcC	unknown	unknown	gnl\|CDD\|184191

Protein	Function_ID	Function_description	E-value
NZ_CP007584.2\|WP_023244049.1\|658721_659930_+\|propionate-kinase	gnl\|CDD\|183484	PRK12379, PRK12379, propionate kinase.	0
NZ_CP007584.2\|WP_000490601.1\|643998_645372_-\|PTS-galactitol-transporter-subunit-IIC	gnl\|CDD\|226298	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism].	0
NZ_CP007584.2\|WP_000178106.1\|651569_652460_+\|2-hydroxy-3-oxopropionate-reductase	gnl\|CDD\|183197	PRK11559, garR, tartronate semialdehyde reductase; Provisional.	0
NZ_CP007584.2\|WP_000080445.1\|645690_646155_-\|PTS-galactitol-transporter-subunit-IIA	gnl\|CDD\|182023	PRK09665, PRK09665, PTS galactitol transporter subunit IIA.	8.14372e-98
NZ_CP007584.2\|WP_000548370.1\|656313_657303_+\|bifunctional-threonine-ammonia-lyase/L-serine-ammonia-lyase-TdcB	gnl\|CDD\|236317	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB.	0
NZ_CP007584.2\|WP_000844173.1\|642911_643955_-\|galactitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|182371	PRK10309, PRK10309, galactitol-1-phosphate 5-dehydrogenase.	0
NZ_CP007584.2\|WP_000463066.1\|665364_666675_+\|serine-dehydratase-subunit-alpha-family-protein	gnl\|CDD\|226206	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism].	0
NZ_CP007584.2\|WP_023244048.1\|659963_662258_+\|formate-C-acetyltransferase	gnl\|CDD\|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0
NZ_CP007584.2\|WP_000633549.1\|666975_667677_-\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.24334e-68
NZ_CP007584.2\|WP_000443187.1\|664007_665339_+\|HAAAP-family-serine/threonine-permease	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	1.63921e-164
NZ_CP007584.2\|WP_000706458.1\|652557_653703_+\|glycerate-2-kinase	gnl\|CDD\|182392	PRK10342, PRK10342, glycerate kinase I; Provisional.	0
NZ_CP007584.2\|WP_046722513.1\|655277_656216_+\|transcriptional-regulator-TdcA	gnl\|CDD\|182391	PRK10341, PRK10341, transcriptional regulator TdcA.	0
NZ_CP007584.2\|WP_000658736.1\|646169_647441_-\|tagatose-bisphosphate-aldolase-subunit-GatZ	gnl\|CDD\|237889	PRK15052, PRK15052, tagatose-bisphosphate aldolase subunit GatZ.	0
NZ_CP007584.2\|WP_000622071.1\|662327_663692_+\|L-serine-ammonia-lyase	gnl\|CDD\|185000	PRK15040, PRK15040, L-serine ammonia-lyase.	0
NZ_CP007584.2\|WP_001057715.1\|650773_651544_+\|2-dehydro-3-deoxyglucarate-aldolase	gnl\|CDD\|182547	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional.	0
NZ_CP007584.2\|WP_000469979.1\|647560_648415_-\|tagatose-bisphosphate-family-class-II-aldolase	gnl\|CDD\|181690	PRK09195, gatY, tagatose-bisphosphate aldolase; Reviewed.	0
NZ_CP007584.2\|WP_046722514.1\|648672_650244_-\|galactarate-dehydratase	gnl\|CDD\|274491	TIGR03248, galactar-dH20, galactarate dehydratase. Galactarate dehydratase converts D-galactarate to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0714).	0
NZ_CP007584.2\|WP_000824293.1\|645375_645660_-\|PTS-galactitol-transporter-subunit-IIB	gnl\|CDD\|182372	PRK10310, PRK10310, PTS galactitol transporter subunit IIB.	4.56919e-60
NZ_CP007584.2\|WP_000108129.1\|657323_658655_+\|threonine/serine-transporter-TdcC	gnl\|CDD\|184191	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional.	0

>NZ_CP007584.2|WP_000706458.1|652557_653703_+|glycerate-2-kinase
MKIVIAPDSYKESLSAAEVAQAIEKGFREIFPDAQYVSVPVADGGEGTVEAMIAATQGVERAAWVTGPLGEKVKACWGMSGDGKTAFIEMAAASGLALVPPEKRNPLITTSRGTGELILQALESGASNIIIGIGGSATNDGGAGMMQALGAKLRDANGADIGYGGGSLHCLSDIDISELDPRLKLCAIRVACDVSNPLIGDNGASRIFGPQKGATEENIVELDRNLAHYADIIKKSLNVDVKAAPGAGAAGGMGAALMAFLGAELRSGIEIVTAALNLEEHIHDCTLVVTGEGRIDSQSIRGKVPIGVANVAKKYHKPVIGIAGSLTHDVGIVHHYGIDAVFSVLTRIVTLEEAFRGAFDNIYRASRNVAAALAIGMRSAG
>NZ_CP007584.2|WP_000178106.1|651569_652460_+|2-hydroxy-3-oxopropionate-reductase
MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEKLAKVEVTR
>NZ_CP007584.2|WP_001057715.1|650773_651544_+|2-dehydro-3-deoxyglucarate-aldolase
MNNAIFPNKFKAALAAQQVQIGCWSALASPITTEVLGLAGFDWLVLDGEHAPNDVTTLIPQLMALKGSASAPVVRVPTNEPVIIKRMLDIGFYNFLIPFVETQEEAARAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITIIVQIESQLGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQQTIQHIFARAKAHGKPCGILAPVEADARRYLEWGATFVAVGSDLGAFRASTQKLADTFKK
>NZ_CP007584.2|WP_046722514.1|648672_650244_-|galactarate-dehydratase
MANIEIRQESPSAFYIKVHETDNVAIIVNDHGLKAGTRFPDGLELTEHIPQGHKVALTDIPAHGEIIRYGEVIGYAVRDIPRGSWIDESLVELPKAPPLNTLPLATKVPEPLPPLEGYTFEGYRNADGSVGTKNLLGITTSVHCVAGVVDYVVKVIERDLLPKYPNVDGVVGLNHLYGCGVAINAPAAVVPIRTIHNIALNPNFGGEVMVIGLGCEKLQPERLLEGTEDVPAIAVESASIVRLQDEQHVGFKSMVDDILRVAERHLTKLNQRQRETCPASELVVGMQCGGSDAFSGVTANPAVGYASDLLVRCGATVMFSEVTEVRDAIHLLTPRAINEAVGKRLLDEMAWYDNYLDMGKTDRSANPSPGNKKGGLANVVEKALGSIAKSGKSAIVEVLSPGQRPTKRGLIYAATPASDFVCGTQQVASGITVQVFTTGRGTPYGLMAVPVIKMATRTELANRWYDLMDINAGTIATGEETIEDVGWKLFHFILNVASSRKKTFSDQWGLHNQLAIFNPAPVT
>NZ_CP007584.2|WP_000469979.1|647560_648415_-|tagatose-bisphosphate-family-class-II-aldolase
MFIISGRTMLKKAQQEGYAVPAFNIHNLETLQVVVETAAELRSPLIVAGTPGTFSYAGVGNIVAIAAELAKSWNHPLAVHLDHHEKLADIKMKVAAGVRSVMIDGSHFPFADNIALVKSVVDYCHRYDVSVEAELGRLGGQEDDLIVDGKDALYTHPEQAREFVEKTGIDSLAIAIGTAHGLYTAEPKLDFERLTEIRQRVDVPLVLHGASGLPTRDITRAISLGICKVNVATELKIAFSGALKNYLTQHAEASDPRHYMIPAKAAMKEVVRKVIADCGCEGKL
>NZ_CP007584.2|WP_000658736.1|646169_647441_-|tagatose-bisphosphate-aldolase-subunit-GatZ
MKEIISRHKAGEQIGICSVCSAHPLVIESALRFDLNSGNKVLIEATSNQVNQFGGYTGMKPADFRDFVYGIAQEVGFPRERLILGGDHLGPNCWQNEPAAAAMEKSVELIKAYVAAGFSKIHLDASMSCADDPTPLDPMVVARRAAVLCKAAEETANEEQKCHLTYVIGTEVPVPGGEASTIGSVHVTREVDAARTLETHQIAFRESGLEEALSRVIAIVVQPGVEFDHTQIIHYQPQAAQALSAWIKETPMVYEAHSTDYQTRQAYRALVRDHYAILKVGPALTFALREAIFALAQMENELISPEQRSRVLEVIDEVMLNEPGYWKKYYRPTWSQAMVDIHFSLSDRIRYYWPHPRIRQSVEKLIANLNNVTLPLGLISQFMPVQFERLSEGVLTPTPHNLIIDKIQDVLRAYRFGCTPDVA
>NZ_CP007584.2|WP_000080445.1|645690_646155_-|PTS-galactitol-transporter-subunit-IIA
MSQLFVRTGITFDSSQQALAHIGKEMLAKGVVHDSYPQALVEREASFPTGIALERHAVAIPHCEAVHAKSPAIYLIRPDKPVMFQQADDDEEIAVSLIIALIVENPAAQLKLLRRLFSELQNPSTLDALLSAPDAELAIRFQETILEPEQCVQV
>NZ_CP007584.2|WP_000824293.1|645375_645660_-|PTS-galactitol-transporter-subunit-IIB
MKRKVIVACGGAVATSTMAAEEIKELCDANHIELDLVQCRVTEIETYMDGADLICTTARVDRAFGDIPVVHGMPFVSGVGIEALQQKILSILMG
>NZ_CP007584.2|WP_000490601.1|643998_645372_-|PTS-galactitol-transporter-subunit-IIC
MFSEIMRYILDLGPTVMLPLVIIVFSKLLGMKLGDCFKSGLHIGIGFVGIGLVIGLMLDSIGPAAKAMAEHFQINLHVIDVGWPGSSPMTWASQIALVAIPVAIGVNVLMLVTRMTRVVNVDIWNIWHMTFTGAMLHLATGSYWLGILGVVVHAAFVYKLGDWFAKDTRDYFGLEGIAIPHGSSAYLGPVAVLVDTIIEKIPGLNRIHFSADDVQKRFGPFGEPVTVGFVMGLVIGVLAGYDAKAVLQLAVKTAAVMLLMPRVIKPIMDGLTPIAKHARKRLQAKFGGQEFLIGLDPALLLGHTSVVSASLIFIPLTILIAVLVPGNQVLPFGDLATIGFFIAMAVAVHQGNLFRTLISGVIIMGITLWIATQTIGLHTQLAANAGALKAGGQVASLDQGGSPITWLLIQLFTWQNIVGFAVIAIIYLAGVLLTWRRARQFVAAEKATALQQSQIAS
>NZ_CP007584.2|WP_000844173.1|642911_643955_-|galactitol-1-phosphate-5-dehydrogenase
MKSVVIHAEGDVRVEERPLPQLQAEDDVLVKVVSSGLCGSDIPRIFAQGAHYYPITLGHEFSGYVESYGTGVTDMQPGDAVACVPLLPCFHCPQCERGYFSLCKQYQFVGSRSEGGNAEYVVVKRANLFRLPSDMPIEDGAFIEPITVGLHAFHLAQGCEGKNVIIVGAGTIGLLALQCARELGARSVTAIDINPQKLELAKALGATHTCNSREMTADDIQTALSDIQFDQLVLETAGTPQTVSLAIDIAGPRAQLALVGTLHHDLTLTTRTFGLILRKELTLLGSWMNYSAPWPGEEWETAARLLAEKRLQLAPLIAHRGDAESFAEAVKALNGAPMQGKILLQLS
>NZ_CP007584.2|WP_046722513.1|655277_656216_+|transcriptional-regulator-TdcA
MNTLVLPKTQHLVVFQEVIRSGSIGSAAKSLGLTQPAVSKIISDVEAYFGVELIVRKNTGVTLTEAGQVLLSWSESITREMKNMINEMNSMTCNTVVDVSFGFPSLIGFTFMSDMIHKFKEVFPKAQVSMYEAQLSSFLPALRDGRLDFAIGTLSNEMQLQDLHVEPLFESEFVLVASKSRTCTGTITLESLKDEQWVLPQTNMGYYSELLTTLQRNGISIENIVKTDSVVTIYNLVLNADFLTVIPCDMTTPFGSNQFITIPIKDTLPAARYAAVWSKNYRIKKAASVLVELAKQYSSYNGCRRRQLIEIE
>NZ_CP007584.2|WP_000548370.1|656313_657303_+|bifunctional-threonine-ammonia-lyase/L-serine-ammonia-lyase-TdcB
MHITYDLPVAIEDILEAKKRLAGKIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTEAEKRKGVVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVETEGRIFIPPYDDPKVIAGQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAIAIKSINPTIKVIGVQAENVHGMAASYYTGEITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQRNKVITEGAGALACAALLSGKLDSHIQNRKTVSIISGGNIDLSRVSQITGLVDA
>NZ_CP007584.2|WP_000108129.1|657323_658655_+|threonine/serine-transporter-TdcC
MSTTDSIVSSQAKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLQMPALNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLSNIALTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKEFGREFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMADAKAQNIPVLSYLANHFASLSGTKSTFATVLEYGASIIALVAIFKSFFGHYLGTLEGLNGLVLKFGYKGDKTKVSMGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRGRLDNVFVTLIGLLTILNIVYKLF
>NZ_CP007584.2|WP_023244049.1|658721_659930_+|propionate-kinase
MNEFPVVLVINCGSSSIKFSVLDVATCDVLMAGIADGMNTENAFLSINGDKPINLAHSNYEEALKAIAFELEKRDLTDSVALIGHRIAHGGELFTQSVIITDEIIDNIRRVSPLAPLHNYANLSGIDAARHLFPAVRQVAVFDTSFHQTLAPEAYLYGLPWEYFSSLGVRRYGFHGTSHRYVSRRAYELLDLDEKNSGLIVAHLGNGASICAVRNGQSVDTSMGMTPLEGLMMGTRSGDVDFGAMAWIAKETGQTLSDLERVVNKESGLLGISGLSSDLRVLEKAWHEGHERARLAIKTFVHRIARHIAGHAASLHRLDGIIFTGGIGENSVLIRQLVIEHLGVLGLTLDVEMNKQPNSHGERIISANPSQVICAVIPTNEEKMIALDAIHLGNVKAPVEFA
>NZ_CP007584.2|WP_023244048.1|659963_662258_+|formate-C-acetyltransferase
MKVNIDTSDMLYAEAWRDFKGTDWKEEINVRDFIQHNYTPYEGDESFLADATPATTALWEKVMAGIRIENATHAPVDFDTNIATTITAHDAGYIEKDLEKIVGLQTDKPLKRALHPFGGVNMIKSSFHAYGREMDADFEYTFTDLRKTHNQGVFDVYSPDMLRCRKSGVLTGLPDGYGRGRIIGDYRRVALYGIRYLVRERELQFADLQSNLEQGQNLEATIRLREELAEHRRALLQMQEMAAKYGYDISRPARNSQEAVQWLYFAYLAAVKSQNGGAMSLGRTASFLDIYIERDFNAGLLTEQQAQELIDHFIMKIRMVRFLRTPEFDSLFSGDPIWATEVIGGMGLDGRTLVTKNSFRYLHTLHTMGPAPEPNLTILWSEALPVAFKKYAAQVSIVTSSLQYENDDLMRTDFNSDDYAIACCVSPMVIGKQMQFFGARANLAKTLLYAINGGVDEKLKIQVGPKTAPLTDEVLDYDAVMESLDHFMDWLAVQYISALNIIHYMHDKYSYEASLMALHDRDVYRTMACGIAGLSVAADSLSAIRYAQVKPIRDENGLAIDFAIEGEYPQYGNNDERVDSIACDLVKRFMQKISVLPTYRNAVPTQSILTITSNVVYGQKTGNTPDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLPFTYAKDGISYTFSIVPAALGKEDAVRKTNLVGLLDGYFHHEAQVEGGQHLNVNVMNREMLLDAIEHPENYPNLTIRVSGYAVRFNALTREQQQDVISRTFTQAM
>NZ_CP007584.2|WP_000622071.1|662327_663692_+|L-serine-ammonia-lyase
MISAFDIFKIGIGPSSSHTVGPMNAGKCFIDRLIDSGDLPRTTRITVDLYGSLSLTGKGHATDTAIIMGLAGNTPQDVNIDSIPAFIQEVARSSRLSVAGGAHVVDFPVADSILFHAETLARHENGMRITAWHGQTPLLHKTYYSIGGGFIVEEERFGQSHDVEKSVPYDFHSASELLTLCERQGLSVSGLMMQNELALRSKEQIDAGFARIWQVMATGIERGMNTEGVLPGPLNVPRRAVALRRLLVSSDNLSRDPMNVIDWINMFALAVSEENAAGGRVVTAPTNGACGIIPAVLAYYDKFRRPVNANSIARYLLSAGAIGMLYKMNASISGAEVGCQGEVGVACSMAAAGLTELLGGSPAQVCIAAEIAMEHNLGLTCDPVAGQVQIPCIERNAINAVKAVNAARMALRRTSEPRVSLDKVIETMYETGKDMNDKYRETSRGGLAIKVVCG
>NZ_CP007584.2|WP_000443187.1|664007_665339_+|HAAAP-family-serine/threonine-permease
MESASNTSVILDASAPARRAGMTESEWREAIKFDSTDTGWVIMSIGMAIGAGIVFLPVQVGLMGLWVFLLSSIIGYPAMYLFQRLFINTLAESPECKDYPSVISGYLGKNWGILLGALYFVMLVIWMFVYSTAITNDSASYLHTFGVTEGLLSDSPFYGLVLICILVAISSRGEKLLFKISTGMVLTKLLVVAALGVSMVGMWHLYNIGALPPMALLIKNAIITLPFTLTSILFIQTLSPMVISYRSREKSIEVARHKALRAMNIAFGILFVTVFFYAVSFTLAMGHDEAVKAYEQNISALAIAAQFISGDGAGWVKVVSVILNIFAVMTAFFGVYLGFREATQGIVMNILRRKMPAEKIKENLVQRGIMIFAILLAWSAIVLNAPVLSFTSICSPIFGMVGCLIPAWLVYKVPALHKYKGASLYLIIITGLLLCVSPFLAFS
>NZ_CP007584.2|WP_000463066.1|665364_666675_+|serine-dehydratase-subunit-alpha-family-protein
MFESKINPLWQSFILAVQEEVKPALGCTEPISLALAAAAAAAELDGTVERIDAWVSPNLMKNGMGVTVPGTGMVGLPIAAALGALGGDAKAGLEVLKDASAKAVADAKAMLAAGHVAVMLQEPCNDILFSRAKVYSGDSWACVTIVGDHTNIVRIETDKGVVFTQADNAQEEEKNSPLGVLSHTSLEEILAFVNAVPFDAIRFILDAARLNGALSQEGLRGSWGLHIGSTLAKQCDRGLLAKDLSTAILIRTSAASDARMGGATLPAMSNSGSGNQGITATVPVMVVAEHVGADDERLARALMLSHLSAIYIHHQLPRLSALCAATTAAMGAAAGMAWLIDGRYDTIAMAISSMIGDVSGMICDGASNSCAMKVSTSASAAWKAVLMALDDTAVTGNEGIVAHNVEQSIANLCSLACRSMQQTDKQIIEIMASKAH
>NZ_CP007584.2|WP_000039327.1|666787_666952_-|hypothetical-protein
MSKKSAKKRQPVVKPAVQETMSATVPLGYEEMLTELEAIVADAEARLAEEEAAA
>NZ_CP007584.2|WP_000633549.1|666975_667677_-|pirin-family-protein
MITTRTAKQCGQADYGWLQARYTFSFGHYFDPTLLGYASLRVLNQEVLAPGASFQPRTYPKVDILNLILDGEAEYRDSDGNHVQAKAGEALLLAAQPGISYSEHNLSKVKPLTRMQLWLDACPERENALVQKIPLLAAQQQLLASPDGEQNSLQLRQQVWVHHITLEKGESLNFQLHGPRAYLQSIHGTFHAMTHNEEREALTCGDGAFIRDEPNITLVADTPLRALLVDLPV

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Crispr_ID: NZ_CP007584_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007584_2

970535-971051

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

8 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of NZ_CP007584_2

>merge|NZ_CP007584|2|970535-971051|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGTACCGCGACACCGTCAACGACAGCAACCACTTGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGGTCACTAAAATTTGTAGGGTTATCCACAGGTGTTCCCCGCGCCAGCGGGGATAAACCGTGTCTTAACTCCATTGCTGAGTCGATTGTGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCACACAGAACGCCAGTTATAATCATCGGTGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGTTTGTGGCGTCAGTAATACTATTATCGGTGTGTTCCCCGCGCTAGCGGGGATAAACCGTTTTTAAATCCGGACAGACCCTGTAACGGATCGTGTTCCCCGCGCCAGCGGGGATAAACCGATCCGACTGTATGCCCAGCAGAACGAGGGCGCGTGTTCCCCGCGCTAGCGGGGATAAACCGCACGAGTGGCAAATTGATTTCGACGAAAAACCGTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP007584|2|2|970535-970990|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACCGCGACACCGTCAACGACAGCAACCACTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTCACTAAAATTTGTAGGGTTATCCACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCTTAACTCCATTGCTGAGTCGATTGTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACACAGAACGCCAGTTATAATCATCGGTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGTTTGTGGCGTCAGTAATACTATTATCGGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TTTTTAAATCCGGACAGACCCTGTAACGGATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCGACTGTATGCCCAGCAGAACGAGGGCGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG

>NZ_CP007584|2|1|970535-971051|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACCGCGACACCGTCAACGACAGCAACCACTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTCACTAAAATTTGTAGGGTTATCCACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCTTAACTCCATTGCTGAGTCGATTGTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACACAGAACGCCAGTTATAATCATCGGTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGTTTGTGGCGTCAGTAATACTATTATCGGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TTTTTAAATCCGGACAGACCCTGTAACGGATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCGACTGTATGCCCAGCAGAACGAGGGCGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CACGAGTGGCAAATTGATTTCGACGAAAAACC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP007584|2|1|970535-971051|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACCGCGACACCGTCAACGACAGCAACCACTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTCACTAAAATTTGTAGGGTTATCCACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCTTAACTCCATTGCTGAGTCGATTGTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACACAGAACGCCAGTTATAATCATCGGTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGTTTGTGGCGTCAGTAATACTATTATCGGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TTTTTAAATCCGGACAGACCCTGTAACGGATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCGACTGTATGCCCAGCAGAACGAGGGCGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CACGAGTGGCAAATTGATTTCGACGAAAAACC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007584.2\|WP_023243192.1\|983565_984624_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP007584.2\|WP_000117946.1\|982991_983552_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP007584.2\|WP_000210863.1\|966412_968050_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP007584.2\|WP_000210454.1\|965384_966185_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP007584.2\|WP_023244651.1\|977366_978320_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP007584.2\|WP_001290660.1\|974631_976344_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP007584.2\|WP_023243195.1\|976419_977154_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP007584.2\|WP_001199961.1\|969566_970238_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP007584.2\|WP_001208002.1\|971148_971946_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP007584.2\|WP_023243201.1\|956336_957479_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
NZ_CP007584.2\|WP_000226842.1\|961683_963918_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP007584.2\|WP_000036734.1\|968132_969431_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP007584.2\|WP_023244652.1\|972832_974632_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP007584.2\|WP_023243200.1\|960336_961632_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP007584.2\|WP_000108313.1\|972035_972398_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP007584.2\|WP_000480218.1\|964001_964358_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
NZ_CP007584.2\|WP_000859612.1\|964323_964620_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_CP007584.2\|WP_000186400.1\|957522_960279_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP007584.2\|WP_023243194.1\|978763_981427_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP007584.2\|WP_023243193.1\|981438_982995_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192

Protein	Function_ID	Function_description	E-value
NZ_CP007584.2\|WP_023243192.1\|983565_984624_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.6231e-131
NZ_CP007584.2\|WP_000117946.1\|982991_983552_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
NZ_CP007584.2\|WP_000210863.1\|966412_968050_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP007584.2\|WP_000210454.1\|965384_966185_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.36327e-159
NZ_CP007584.2\|WP_023244651.1\|977366_978320_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP007584.2\|WP_001290660.1\|974631_976344_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP007584.2\|WP_023243195.1\|976419_977154_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.18614e-138
NZ_CP007584.2\|WP_001199961.1\|969566_970238_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP007584.2\|WP_001208002.1\|971148_971946_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	5.39566e-102
NZ_CP007584.2\|WP_023243201.1\|956336_957479_+\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
NZ_CP007584.2\|WP_000226842.1\|961683_963918_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP007584.2\|WP_000036734.1\|968132_969431_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP007584.2\|WP_023244652.1\|972832_974632_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP007584.2\|WP_023243200.1\|960336_961632_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP007584.2\|WP_000108313.1\|972035_972398_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP007584.2\|WP_000480218.1\|964001_964358_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	6.12601e-20
NZ_CP007584.2\|WP_000859612.1\|964323_964620_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	1.09008e-13
NZ_CP007584.2\|WP_000186400.1\|957522_960279_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP007584.2\|WP_023243194.1\|978763_981427_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP007584.2\|WP_023243193.1\|981438_982995_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0

>NZ_CP007584.2|WP_001199961.1|969566_970238_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP007584.2|WP_000036734.1|968132_969431_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP007584.2|WP_000210863.1|966412_968050_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP007584.2|WP_000210454.1|965384_966185_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP007584.2|WP_000859612.1|964323_964620_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MKTVKLTPKASEDLENIWHYGWQHFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFERHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>NZ_CP007584.2|WP_000480218.1|964001_964358_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>NZ_CP007584.2|WP_000226842.1|961683_963918_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNIQAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>NZ_CP007584.2|WP_023243200.1|960336_961632_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLECFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>NZ_CP007584.2|WP_000186400.1|957522_960279_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>NZ_CP007584.2|WP_023243201.1|956336_957479_+|glycerate-kinase
MKMVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVSVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR
>NZ_CP007584.2|WP_001208002.1|971148_971946_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP007584.2|WP_000108313.1|972035_972398_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP007584.2|WP_023244652.1|972832_974632_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMSGITLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVMVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP007584.2|WP_001290660.1|974631_976344_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENIAEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP007584.2|WP_023243195.1|976419_977154_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDEITDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP007584.2|WP_023244651.1|977366_978320_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDLLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP007584.2|WP_023243194.1|978763_981427_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMCNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYTSGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP007584.2|WP_023243193.1|981438_982995_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVNLADENVMDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPIWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGGCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRGALKEAWFTNAKDARGDFSFIDIDFWNLTQGRFLNLIQDLENGHKPDERLNKWQRELWLFTRRYFDDRVFTNPYESSDLKRIMTARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP007584.2|WP_000117946.1|982991_983552_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NZ_CP007584.2|WP_023243192.1|983565_984624_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICINKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNAAVKRITALHENMNEVYAQETAFKNFNVMNQQGSMKDVLDFICA

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Crispr_ID: NZ_CP007584_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007584_3

987320-987836

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCNAGCGGGGATAAACCG	CRT

8 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP007584_3

>merge|NZ_CP007584|3|987320-987836|CRISPRCasFinder,CRT
GTGTTCCCCGCGCTAGCGGGGATAAACCGGACCACGACTGGAGTGATCAGATCGGTGTGGTGTGTTCCCCGCGCTAGCGGGGATAAACCGCGAGCGGTACAACTCCAGCATTAATCCCCACCGTGTTCCCCGCGCTAGCGGGGATAAACCGCGGCGAATCAGTACGAGGGACGGCTGGCGCTGGTGTTCCCCGCGCTAGCGGGGATAAACCGCGGTTCCGTCATTGCAGATCCCCCACTTCATCGTGTTCCCCGCGCTAGCGGGGATAAACCGGACGCGTCTTTTCCACAGCAGGACTCTAAATCGTGTTCCCCGCGCCAGCGGGGATAAACCGTACGCCAGAGGAATGGCTTTCAGTGTTTTGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGCGGCTAAACGATGAATTAACCAGGGAGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGCACAACGCCTGGATATCCGCCCATCGGCCGTGTTCCCCGCGTCAGCGGGGATAAACAC

>NZ_CP007584|3|2|987320-987836|CRISPRCasFinder
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GACCACGACTGGAGTGATCAGATCGGTGTGGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGAGCGGTACAACTCCAGCATTAATCCCCACC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGGCGAATCAGTACGAGGGACGGCTGGCGCTG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGGTTCCGTCATTGCAGATCCCCCACTTCATC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GACGCGTCTTTTCCACAGCAGGACTCTAAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGCGGCTAAACGATGAATTAACCAGGGAGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCACAACGCCTGGATATCCGCCCATCGGCC
GTGTTCCCCGCGTCAGCGGGGATAAACAC

>NZ_CP007584|3|2|987320-987836|CRT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GACCACGACTGGAGTGATCAGATCGGTGTGGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGAGCGGTACAACTCCAGCATTAATCCCCACC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGGCGAATCAGTACGAGGGACGGCTGGCGCTG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGGTTCCGTCATTGCAGATCCCCCACTTCATC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GACGCGTCTTTTCCACAGCAGGACTCTAAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGCGGCTAAACGATGAATTAACCAGGGAGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCACAACGCCTGGATATCCGCCCATCGGCC
GTGTTCCCCGCGTCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007584.2\|WP_023243192.1\|983565_984624_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP007584.2\|WP_000372384.1\|989147_990056_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP007584.2\|WP_000134246.1\|994177_995227_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP007584.2\|WP_023244651.1\|977366_978320_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP007584.2\|WP_001537530.1\|992147_992471_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP007584.2\|WP_000117946.1\|982991_983552_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP007584.2\|WP_000144830.1\|986009_986930_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP007584.2\|WP_001518648.1\|986929_987223_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP007584.2\|WP_023243195.1\|976419_977154_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP007584.2\|WP_001092255.1\|990065_991505_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP007584.2\|WP_023243194.1\|978763_981427_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP007584.2\|WP_000490481.1\|987850_988897_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP007584.2\|WP_000741650.1\|992991_993702_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP007584.2\|WP_000281483.1\|985362_986013_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP007584.2\|WP_001221538.1\|995207_995969_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP007584.2\|WP_023243193.1\|981438_982995_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP007584.2\|WP_001173664.1\|991491_992097_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP007584.2\|WP_000085115.1\|984634_985381_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP007584.2\|WP_000517480.1\|992661_992973_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP007584.2\|WP_001219245.1\|993701_994181_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851

Protein	Function_ID	Function_description	E-value
NZ_CP007584.2\|WP_023243192.1\|983565_984624_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.6231e-131
NZ_CP007584.2\|WP_000372384.1\|989147_990056_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP007584.2\|WP_000134246.1\|994177_995227_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP007584.2\|WP_023244651.1\|977366_978320_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP007584.2\|WP_001537530.1\|992147_992471_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
NZ_CP007584.2\|WP_000117946.1\|982991_983552_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
NZ_CP007584.2\|WP_000144830.1\|986009_986930_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.63116e-157
NZ_CP007584.2\|WP_001518648.1\|986929_987223_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
NZ_CP007584.2\|WP_023243195.1\|976419_977154_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.18614e-138
NZ_CP007584.2\|WP_001092255.1\|990065_991505_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP007584.2\|WP_023243194.1\|978763_981427_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP007584.2\|WP_000490481.1\|987850_988897_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP007584.2\|WP_000741650.1\|992991_993702_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.67998e-119
NZ_CP007584.2\|WP_000281483.1\|985362_986013_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	7.7595e-75
NZ_CP007584.2\|WP_001221538.1\|995207_995969_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NZ_CP007584.2\|WP_023243193.1\|981438_982995_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP007584.2\|WP_001173664.1\|991491_992097_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.11365e-145
NZ_CP007584.2\|WP_000085115.1\|984634_985381_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.23137e-48
NZ_CP007584.2\|WP_000517480.1\|992661_992973_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP007584.2\|WP_001219245.1\|993701_994181_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104

>NZ_CP007584.2|WP_001518648.1|986929_987223_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NZ_CP007584.2|WP_000144830.1|986009_986930_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>NZ_CP007584.2|WP_000281483.1|985362_986013_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASTIFDVQTRPFAPMLSAGQTLRFNLRANPTICKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALEWLARQGEQNGFTLREASVDAYRQQQIRREKSRQMIQFSSVDYTGVLVINEPALFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>NZ_CP007584.2|WP_000085115.1|984634_985381_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNTFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQAALQHPVFPLYLGRKSHPLALPLAPQLLEGNAADVLREAYRWYQDQFNALKLTLPGLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NZ_CP007584.2|WP_023243192.1|983565_984624_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICINKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNAAVKRITALHENMNEVYAQETAFKNFNVMNQQGSMKDVLDFICA
>NZ_CP007584.2|WP_000117946.1|982991_983552_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NZ_CP007584.2|WP_023243193.1|981438_982995_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVNLADENVMDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPIWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGGCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRGALKEAWFTNAKDARGDFSFIDIDFWNLTQGRFLNLIQDLENGHKPDERLNKWQRELWLFTRRYFDDRVFTNPYESSDLKRIMTARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP007584.2|WP_023243194.1|978763_981427_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMCNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYTSGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP007584.2|WP_023244651.1|977366_978320_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDLLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP007584.2|WP_023243195.1|976419_977154_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDEITDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP007584.2|WP_000490481.1|987850_988897_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP007584.2|WP_000372384.1|989147_990056_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP007584.2|WP_001092255.1|990065_991505_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPMEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP007584.2|WP_001173664.1|991491_992097_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARSGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP007584.2|WP_001537530.1|992147_992471_+|DUF3561-family-protein
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP007584.2|WP_000517480.1|992661_992973_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP007584.2|WP_000741650.1|992991_993702_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLYDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP007584.2|WP_001219245.1|993701_994181_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP007584.2|WP_000134246.1|994177_995227_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP007584.2|WP_001221538.1|995207_995969_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP007584_3	3.8\|987776\|32\|NZ_CP007584\|CRISPRCasFinder,CRT	987776-987807	32	NZ_CP044185	Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403	35345-35376	0	1.0
NZ_CP007584_3	3.8\|987776\|32\|NZ_CP007584\|CRISPRCasFinder,CRT	987776-987807	32	NZ_CP029990	Salmonella enterica subsp. diarizonae serovar 48:i:z strain SA20121591 plasmid pSA20121591.1, complete sequence	95164-95195	1	0.969
NZ_CP007584_3	3.8\|987776\|32\|NZ_CP007584\|CRISPRCasFinder,CRT	987776-987807	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	9403-9434	1	0.969
NZ_CP007584_3	3.8\|987776\|32\|NZ_CP007584\|CRISPRCasFinder,CRT	987776-987807	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	39737-39768	1	0.969
NZ_CP007584_3	3.8\|987776\|32\|NZ_CP007584\|CRISPRCasFinder,CRT	987776-987807	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	113376-113407	1	0.969
NZ_CP007584_2	2.1\|970564\|32\|NZ_CP007584\|PILER-CR,CRISPRCasFinder,CRT	970564-970595	32	NZ_CP018865	Arthrobacter crystallopoietes strain DSM 20117 plasmid pLDW-10, complete sequence	205587-205618	6	0.812
NZ_CP007584_2	2.3\|970686\|32\|NZ_CP007584\|PILER-CR,CRISPRCasFinder,CRT	970686-970717	32	NC_015727	Cupriavidus necator N-1 plasmid pBB1, complete sequence	1236642-1236673	6	0.812
NZ_CP007584_2	2.3\|970686\|32\|NZ_CP007584\|PILER-CR,CRISPRCasFinder,CRT	970686-970717	32	NC_015727	Cupriavidus necator N-1 plasmid pBB1, complete sequence	1370300-1370331	6	0.812
NZ_CP007584_3	3.8\|987776\|32\|NZ_CP007584\|CRISPRCasFinder,CRT	987776-987807	32	NZ_CP040720	Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence	270963-270994	7	0.781
NZ_CP007584_2	2.1\|970564\|32\|NZ_CP007584\|PILER-CR,CRISPRCasFinder,CRT	970564-970595	32	NZ_CP015738	Shinella sp. HZN7 plasmid pShin-02, complete sequence	176307-176338	8	0.75
NZ_CP007584_2	2.1\|970564\|32\|NZ_CP007584\|PILER-CR,CRISPRCasFinder,CRT	970564-970595	32	NZ_CP010410	Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence	332281-332312	8	0.75
NZ_CP007584_2	2.6\|970869\|32\|NZ_CP007584\|PILER-CR,CRISPRCasFinder,CRT	970869-970900	32	NZ_CP025224	Enterococcus sp. CR-Ec1 plasmid pCREc1, complete sequence	62016-62047	8	0.75
NZ_CP007584_2	2.8\|970991\|32\|NZ_CP007584\|CRISPRCasFinder,CRT	970991-971022	32	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	1655546-1655577	8	0.75
NZ_CP007584_2	2.8\|970991\|32\|NZ_CP007584\|CRISPRCasFinder,CRT	970991-971022	32	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	1565948-1565979	8	0.75
NZ_CP007584_2	2.8\|970991\|32\|NZ_CP007584\|CRISPRCasFinder,CRT	970991-971022	32	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	1565949-1565980	8	0.75
NZ_CP007584_2	2.1\|970564\|32\|NZ_CP007584\|PILER-CR,CRISPRCasFinder,CRT	970564-970595	32	AP018399	Xanthomonas phage XacN1 DNA, complete genome	89668-89699	9	0.719
NZ_CP007584_2	2.1\|970564\|32\|NZ_CP007584\|PILER-CR,CRISPRCasFinder,CRT	970564-970595	32	NC_030917	Gordonia phage OneUp, complete genome	3597-3628	9	0.719
NZ_CP007584_2	2.8\|970991\|32\|NZ_CP007584\|CRISPRCasFinder,CRT	970991-971022	32	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	1578348-1578379	9	0.719
NZ_CP007584_2	2.8\|970991\|32\|NZ_CP007584\|CRISPRCasFinder,CRT	970991-971022	32	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	1496565-1496596	9	0.719
NZ_CP007584_2	2.8\|970991\|32\|NZ_CP007584\|CRISPRCasFinder,CRT	970991-971022	32	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	1568471-1568502	9	0.719
NZ_CP007584_2	2.8\|970991\|32\|NZ_CP007584\|CRISPRCasFinder,CRT	970991-971022	32	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	1495587-1495618	9	0.719
NZ_CP007584_2	2.8\|970991\|32\|NZ_CP007584\|CRISPRCasFinder,CRT	970991-971022	32	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	1496557-1496588	9	0.719
NZ_CP007584_2	2.8\|970991\|32\|NZ_CP007584\|CRISPRCasFinder,CRT	970991-971022	32	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	1495910-1495941	9	0.719
NZ_CP007584_2	2.8\|970991\|32\|NZ_CP007584\|CRISPRCasFinder,CRT	970991-971022	32	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	1496547-1496578	9	0.719
NZ_CP007584_2	2.8\|970991\|32\|NZ_CP007584\|CRISPRCasFinder,CRT	970991-971022	32	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	1578515-1578546	9	0.719
NZ_CP007584_2	2.8\|970991\|32\|NZ_CP007584\|CRISPRCasFinder,CRT	970991-971022	32	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	1578498-1578529	9	0.719
NZ_CP007584_2	2.8\|970991\|32\|NZ_CP007584\|CRISPRCasFinder,CRT	970991-971022	32	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	1578478-1578509	9	0.719
NZ_CP007584_2	2.1\|970564\|32\|NZ_CP007584\|PILER-CR,CRISPRCasFinder,CRT	970564-970595	32	NZ_CP018784	Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence	161882-161913	10	0.688

1. spacer 3.8|987776|32|NZ_CP007584|CRISPRCasFinder,CRT matches to NZ_CP044185 (Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403) position: , mismatch: 0, identity: 1.0

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatatccgcccatcggcc	Protospacer
********************************

2. spacer 3.8|987776|32|NZ_CP007584|CRISPRCasFinder,CRT matches to NZ_CP029990 (Salmonella enterica subsp. diarizonae serovar 48:i:z strain SA20121591 plasmid pSA20121591.1, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

3. spacer 3.8|987776|32|NZ_CP007584|CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

4. spacer 3.8|987776|32|NZ_CP007584|CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

5. spacer 3.8|987776|32|NZ_CP007584|CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

6. spacer 2.1|970564|32|NZ_CP007584|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018865 (Arthrobacter crystallopoietes strain DSM 20117 plasmid pLDW-10, complete sequence) position: , mismatch: 6, identity: 0.812

taccgcgacaccgtcaacgacagcaaccactt	CRISPR spacer
aaccgcgtcaccggcaacgacagcaaccggct	Protospacer
 ****** ***** **************. .*

7. spacer 2.3|970686|32|NZ_CP007584|PILER-CR,CRISPRCasFinder,CRT matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 6, identity: 0.812

tgtcttaactccattgctgagtcga-ttgtgaa	CRISPR spacer
tgctttaactccatttttgagtcgatttgtgc-	Protospacer
**..*********** .******** *****

8. spacer 2.3|970686|32|NZ_CP007584|PILER-CR,CRISPRCasFinder,CRT matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 6, identity: 0.812

tgtcttaactccattgctgagtcga-ttgtgaa	CRISPR spacer
tgctttaactccatttttgagtcgatttgtgc-	Protospacer
**..*********** .******** *****

9. spacer 3.8|987776|32|NZ_CP007584|CRISPRCasFinder,CRT matches to NZ_CP040720 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgagaaacgcctggatctccgcccaccgccg	Protospacer
*** . *********** ********.** *

10. spacer 2.1|970564|32|NZ_CP007584|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015738 (Shinella sp. HZN7 plasmid pShin-02, complete sequence) position: , mismatch: 8, identity: 0.75

taccgcgacaccgtcaacgacagcaaccactt	CRISPR spacer
cgccgcgacaccgtcaacgacatcatcctgcc	Protospacer
..******************** ** **  ..

11. spacer 2.1|970564|32|NZ_CP007584|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010410 (Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

taccgcgacaccgtcaacgacagcaaccactt--	CRISPR spacer
gacagcgacaccgtcatcgacagca--cggtgaa	Protospacer
 ** ************ ********  *. *

12. spacer 2.6|970869|32|NZ_CP007584|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025224 (Enterococcus sp. CR-Ec1 plasmid pCREc1, complete sequence) position: , mismatch: 8, identity: 0.75

tttttaaatccggacagaccctgtaacggatc	CRISPR spacer
tttttaaatccggaaagacactgtcaaaaaag	Protospacer
************** **** **** * ..*

13. spacer 2.8|970991|32|NZ_CP007584|CRISPRCasFinder,CRT matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 8, identity: 0.75

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
ccagagcggcaaatggatttcgacgacctacg	Protospacer
*  ***.******* ***********   **

14. spacer 2.8|970991|32|NZ_CP007584|CRISPRCasFinder,CRT matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
ccagagcggcaaatggatttcgacgacctacg	Protospacer
*  ***.******* ***********   **

15. spacer 2.8|970991|32|NZ_CP007584|CRISPRCasFinder,CRT matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
ccagagcggcaaatggatttcgacgacctacg	Protospacer
*  ***.******* ***********   **

16. spacer 2.1|970564|32|NZ_CP007584|PILER-CR,CRISPRCasFinder,CRT matches to AP018399 (Xanthomonas phage XacN1 DNA, complete genome) position: , mismatch: 9, identity: 0.719

taccgcgacaccgtcaacgacagcaaccactt	CRISPR spacer
acttgcgacaccgacaccgacagcaacccgta	Protospacer
  ..********* ** ***********  *

17. spacer 2.1|970564|32|NZ_CP007584|PILER-CR,CRISPRCasFinder,CRT matches to NC_030917 (Gordonia phage OneUp, complete genome) position: , mismatch: 9, identity: 0.719

taccgcgacaccgtcaacgacagcaaccactt	CRISPR spacer
gtgagctacaccgtcaacgacatcaacgagta	Protospacer
    ** *************** **** * *

18. spacer 2.8|970991|32|NZ_CP007584|CRISPRCasFinder,CRT matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

19. spacer 2.8|970991|32|NZ_CP007584|CRISPRCasFinder,CRT matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

20. spacer 2.8|970991|32|NZ_CP007584|CRISPRCasFinder,CRT matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

21. spacer 2.8|970991|32|NZ_CP007584|CRISPRCasFinder,CRT matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

22. spacer 2.8|970991|32|NZ_CP007584|CRISPRCasFinder,CRT matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

23. spacer 2.8|970991|32|NZ_CP007584|CRISPRCasFinder,CRT matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

24. spacer 2.8|970991|32|NZ_CP007584|CRISPRCasFinder,CRT matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

25. spacer 2.8|970991|32|NZ_CP007584|CRISPRCasFinder,CRT matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

26. spacer 2.8|970991|32|NZ_CP007584|CRISPRCasFinder,CRT matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

27. spacer 2.8|970991|32|NZ_CP007584|CRISPRCasFinder,CRT matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaacc	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

28. spacer 2.1|970564|32|NZ_CP007584|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018784 (Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence) position: , mismatch: 10, identity: 0.688

taccgcgacaccgtcaacgacagcaaccactt	CRISPR spacer
agccgcgccaccggcaacgacagcacgaagac	Protospacer
 .***** ***** ***********   *  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1152696 : 1158500

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021000674.1\|1152696_1155030_-	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	84.5
WP_000743150.1\|1155044_1155365_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_001604623.1\|1155361_1155589_-	hypothetical protein	NA	NA	NA	NA
WP_023243884.1\|1155585_1156137_-	ash family protein	Q7M2A7	Enterobacteria_phage	8.6e-36	71.3
WP_001604627.1\|1156133_1156400_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	1.7e-29	70.5
WP_024155472.1\|1156937_1157675_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	8.4e-79	64.0
WP_000984211.1\|1157671_1157917_+	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	6.3e-31	76.5
WP_000210078.1\|1157933_1158500_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	7.7e-56	62.7

DBSCAN-SWA_2

1297677 : 1369072

Salmonella_phage(89.8%)

tRNA,protease,tail,head,holin,terminase,capsid,integrase

attL 1284079:1284095|attR 1352328:1352344

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1284079:1284095	attL	NA	NA	NA	NA
WP_000003211.1\|1297677_1298844_+\|tRNA	bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN	NA	NA	NA	NA
WP_001090890.1\|1299135_1300140_+	cytoskeleton protein RodZ	NA	NA	NA	NA
WP_000551804.1\|1300166_1301285_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_001107146.1\|1301395_1302670_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_000409190.1\|1302683_1303304_+	YfgM family protein	NA	NA	NA	NA
WP_001177072.1\|1303314_1304493_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA
WP_000249411.1\|1304609_1306082_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_023243526.1\|1306170_1306392_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_023231848.1\|1306737_1308930_+	intimin-like inverse autotransporter SinH	NA	NA	NA	NA
WP_023243525.1\|1308987_1309953_+	hypothetical protein	NA	NA	NA	NA
WP_071925156.1\|1310072_1315673_+	hypothetical protein	NA	NA	NA	NA
WP_023243961.1\|1315831_1316059_+	hypothetical protein	NA	NA	NA	NA
WP_071881979.1\|1316708_1322870_+	fibronectin-binding autotransporter adhesin ShdA	A0A2L1IV18	Escherichia_phage	1.1e-25	25.9
WP_023243645.1\|1323031_1324381_-	exodeoxyribonuclease VII large subunit	A0A2H4UVM9	Bodo_saltans_virus	2.6e-41	35.6
WP_023243644.1\|1324541_1326008_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	4.0e-88	38.7
WP_046722502.1\|1326077_1327655_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_023972305.1\|1327847_1329098_+\|integrase	tyrosine-type recombinase/integrase	Q858E8	Salmonella_phage	5.5e-240	99.8
WP_015971063.1\|1329558_1330137_-	adenine methylase	Q858E6	Salmonella_phage	3.7e-114	100.0
WP_015971065.1\|1330283_1330583_-	PerC family transcriptional regulator	Q858E4	Salmonella_phage	1.4e-48	100.0
WP_015971066.1\|1330692_1330941_-	AlpA family phage regulatory protein	T1SA17	Salmonella_phage	4.0e-41	100.0
WP_023972301.1\|1330989_1332012_-	recombination protein RecT	Q858E1	Salmonella_phage	4.0e-188	100.0
WP_015971068.1\|1332021_1332921_-	YqaJ viral recombinase family protein	Q858E0	Salmonella_phage	2.5e-170	100.0
WP_015971069.1\|1332917_1333220_-	hypothetical protein	Q858D9	Salmonella_phage	3.5e-47	100.0
WP_000291789.1\|1333224_1333407_-	hypothetical protein	T1SA20	Salmonella_phage	8.5e-25	100.0
WP_015971071.1\|1333598_1334195_-	helix-turn-helix transcriptional regulator	Q858D7	Salmonella_phage	2.0e-107	100.0
WP_003037808.1\|1334350_1334584_+	hypothetical protein	Q858D6	Salmonella_phage	5.4e-40	100.0
WP_015971074.1\|1334928_1336098_+	DNA cytosine methyltransferase	Q858D4	Salmonella_phage	4.0e-232	100.0
WP_015971076.1\|1336900_1337365_+	crossover junction endodeoxyribonuclease RuvC	Q858D2	Salmonella_phage	1.5e-81	100.0
WP_115288255.1\|1337700_1338117_+	ead/Ea22-like family protein	Q858D1	Salmonella_phage	6.2e-71	99.3
WP_015971078.1\|1338113_1338947_+	ead/Ea22-like family protein	Q858D0	Salmonella_phage	2.9e-152	100.0
WP_015995294.1\|1338948_1339167_+	DUF4014 family protein	B9UDM3	Salmonella_phage	4.9e-35	100.0
WP_015971080.1\|1339170_1339926_+	DUF551 domain-containing protein	Q858C8	Salmonella_phage	2.1e-125	100.0
WP_015971081.1\|1339925_1340198_+	hypothetical protein	Q858C7	Salmonella_phage	2.4e-39	100.0
WP_015971082.1\|1340190_1340529_+	hypothetical protein	Q858C6	Salmonella_phage	3.4e-59	100.0
WP_164498438.1\|1340551_1341229_+\|terminase	terminase small subunit	Q858H4	Salmonella_phage	8.2e-105	100.0
WP_015971037.1\|1341225_1342701_+	hypothetical protein	Q858H3	Salmonella_phage	5.2e-298	100.0
WP_015971083.1\|1342766_1343132_-	hypothetical protein	A0AR14	Salmonella_phage	1.1e-63	100.0
WP_000334867.1\|1343622_1343829_+	hypothetical protein	T1SA67	Salmonella_phage	5.7e-09	100.0
WP_023231192.1\|1343843_1345514_+\|head,tail	phage head-tail connector protein	T1S9Z7	Salmonella_phage	0.0e+00	98.7
WP_023231193.1\|1345510_1345807_+	hypothetical protein	Q858H0	Salmonella_phage	1.6e-49	100.0
WP_023231194.1\|1345809_1346526_+\|protease	endoprotease	Q858G9	Salmonella_phage	3.8e-92	100.0
WP_015971041.1\|1346536_1347544_+\|capsid	phage capsid protein	T1S9H9	Salmonella_phage	2.6e-192	100.0
WP_015971042.1\|1347556_1347949_+	hypothetical protein	T1SA71	Salmonella_phage	3.2e-61	100.0
WP_015971043.1\|1347941_1348226_+	hypothetical protein	Q858G6	Salmonella_phage	1.9e-47	100.0
WP_015971044.1\|1348290_1348626_+	hypothetical protein	Q858G5	Salmonella_phage	1.8e-57	100.0
WP_023231195.1\|1348625_1349231_+	hypothetical protein	Q858G4	Salmonella_phage	8.1e-112	100.0
WP_015971046.1\|1349230_1351708_+	hypothetical protein	Q858G3	Salmonella_phage	0.0e+00	100.0
WP_023972415.1\|1351707_1352172_+	hypothetical protein	Q858G2	Salmonella_phage	1.5e-86	100.0
WP_015971048.1\|1352171_1352714_+	hypothetical protein	Q858G1	Salmonella_phage	7.3e-72	100.0
1352328:1352344	attR	NA	NA	NA	NA
WP_015971049.1\|1352726_1355255_+	minor structural protein	Q858G0	Salmonella_phage	0.0e+00	100.0
WP_015971050.1\|1355254_1357159_+	hypothetical protein	Q858F9	Salmonella_phage	0.0e+00	100.0
WP_046722501.1\|1357158_1359915_+	hypothetical protein	Q858F8	Salmonella_phage	0.0e+00	99.9
WP_015971052.1\|1359911_1360106_+	hypothetical protein	Q858F7	Salmonella_phage	5.3e-25	100.0
WP_015971053.1\|1360144_1360405_-	hypothetical protein	Q858F6	Salmonella_phage	1.3e-42	100.0
WP_015971054.1\|1360602_1363815_+	right-handed parallel beta-helix repeat-containing protein	G9L6E4	Escherichia_phage	2.1e-97	78.3
WP_023231203.1\|1363856_1365035_-	O-antigen ligase family protein	Q858F4	Salmonella_phage	9.6e-202	100.0
WP_015971056.1\|1365047_1365248_-	hypothetical protein	Q858F3	Salmonella_phage	3.8e-26	100.0
WP_001275998.1\|1365409_1365814_+	membrane protein	T1SA79	Salmonella_phage	9.9e-66	100.0
WP_015971058.1\|1365800_1366109_+\|holin	phage holin family protein	Q858F1	Salmonella_phage	2.0e-50	100.0
WP_015971059.1\|1366098_1366728_+	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	1.1e-119	100.0
WP_015971060.1\|1366724_1367207_+	DUF2514 domain-containing protein	Q858E9	Salmonella_phage	1.0e-77	100.0
WP_023244201.1\|1367864_1368194_-	DUF1493 family protein	NA	NA	NA	NA
WP_000075924.1\|1368880_1369072_-	DUF2633 family protein	G9L6F2	Escherichia_phage	6.4e-23	84.1

DBSCAN-SWA_3

1720705 : 1729876

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569166.1\|1720705_1721653_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8
WP_000824854.1\|1721636_1722368_+	ABC transporter permease	NA	NA	NA	NA
WP_046722494.1\|1722348_1722456_-	protein YohO	NA	NA	NA	NA
WP_001240418.1\|1722515_1723247_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_023243038.1\|1723469_1725155_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.9e-278	91.1
WP_000598637.1\|1725151_1725871_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950413.1\|1725917_1726385_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_001197951.1\|1726441_1726972_-	YehR family lipoprotein	NA	NA	NA	NA
WP_000703137.1\|1727143_1727602_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_000195332.1\|1727842_1729876_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_4

1797968 : 1804265

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023244537.1\|1797968_1799372_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	26.5
WP_000981469.1\|1799549_1800443_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_000697846.1\|1800819_1801905_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
WP_001023662.1\|1801904_1802804_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.4e-30	36.3
WP_023243995.1\|1802851_1803730_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.3e-107	64.1
WP_001100808.1\|1803734_1804265_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.8e-52	57.1

DBSCAN-SWA_5

1914555 : 1921804

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023243860.1\|1914555_1914975_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
WP_000457663.1\|1914977_1916246_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	9.3e-227	91.9
WP_000208509.1\|1916700_1916913_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_024131163.1\|1916923_1917112_+	hypothetical protein	NA	NA	NA	NA
WP_001080661.1\|1917371_1918565_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	3.0e-110	56.2
WP_000107435.1\|1919213_1919525_+	hypothetical protein	NA	NA	NA	NA
WP_023243859.1\|1919604_1920300_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
WP_023243858.1\|1920373_1921804_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_6

1990995 : 2128051

167

Salmonella_phage(22.61%)

tRNA,head,tail,holin,plate,lysis,terminase,capsid,portal,integrase

attL 2075927:2075949|attR 2134621:2134643

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023244247.1\|1990995_1992729_-\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	4.9e-85	33.2
WP_000024796.1\|1992965_1993535_+	VOC family protein	NA	NA	NA	NA
WP_001185769.1\|1993554_1994301_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_000569035.1\|1994536_1995508_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_000019614.1\|1995504_1996248_-	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	3.2e-25	30.9
WP_000252975.1\|1996288_1996684_-	MAPEG family protein	NA	NA	NA	NA
WP_045888880.1\|1996736_1997510_-	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	5.5e-57	80.3
WP_006669545.1\|1997488_1998802_-	DUF3596 domain-containing protein	Q8W658	Enterobacteria_phage	2.3e-228	87.4
WP_006669544.1\|1998860_1999097_-	excisionase family protein	Q8W657	Enterobacteria_phage	4.2e-40	93.6
WP_006669542.1\|1999135_1999705_-	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	4.3e-91	83.1
WP_046722482.1\|1999708_2000227_-	hypothetical protein	A0A192Y6F5	Salmonella_phage	5.6e-45	58.0
WP_046722481.1\|2001557_2002097_-	hypothetical protein	A0A192Y7N1	Salmonella_phage	2.7e-66	73.5
WP_046722480.1\|2002167_2002707_-	hypothetical protein	A0A192Y8M4	Salmonella_phage	1.0e-97	99.4
WP_046722479.1\|2002843_2003671_-	DUF2303 family protein	Q8HAA2	Salmonella_phage	3.0e-149	98.2
WP_000997190.1\|2003728_2004100_-	hypothetical protein	Q8HAA1	Salmonella_phage	1.1e-63	100.0
WP_001749159.1\|2004880_2005555_-	LexA family transcriptional regulator	U5P0T5	Shigella_phage	1.7e-115	86.9
WP_046722478.1\|2005643_2005844_+	helix-turn-helix domain-containing protein	U5P445	Shigella_phage	1.6e-21	80.0
WP_000509733.1\|2005887_2006442_+	hypothetical protein	A0A1C9II13	Salmonella_phage	2.0e-101	99.5
WP_071925159.1\|2006605_2006785_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	9.2e-16	69.1
WP_046722476.1\|2006774_2007719_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	2.3e-129	86.0
WP_046722475.1\|2007720_2008203_+	PerC family transcriptional regulator	Q8HA95	Salmonella_phage	6.7e-85	97.5
WP_046722474.1\|2008202_2009081_+	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	2.7e-148	87.7
WP_046722473.1\|2009073_2011008_+	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	1.0e-200	53.8
WP_046722472.1\|2011004_2011394_+	RusA family crossover junction endodeoxyribonuclease	A0A192Y8N5	Salmonella_phage	7.1e-69	98.4
WP_046722471.1\|2011410_2012271_+	KilA-N domain-containing protein	A0A192Y6F8	Salmonella_phage	3.5e-161	98.3
WP_006762306.1\|2012278_2013268_+	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	3.2e-190	97.3
WP_023195405.1\|2013282_2013861_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	3.2e-49	57.8
WP_001539755.1\|2014085_2014505_+	hypothetical protein	A0A291AWZ9	Escherichia_phage	6.0e-58	75.5
WP_001803642.1\|2015005_2015395_+\|holin	phage holin family protein	K7PHB9	Enterobacterial_phage	1.8e-40	71.8
WP_000226306.1\|2015381_2015663_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	3.3e-36	80.6
WP_023195402.1\|2015662_2016277_+	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	1.6e-107	92.2
WP_000636436.1\|2016273_2016816_+	DUF2514 family protein	NA	NA	NA	NA
WP_046722470.1\|2016918_2017422_+	hypothetical protein	NA	NA	NA	NA
WP_023223569.1\|2017444_2017636_+	hypothetical protein	NA	NA	NA	NA
WP_001102153.1\|2017680_2018226_+\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
WP_046722469.1\|2018197_2020129_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	6.3e-259	65.6
WP_046722468.1\|2020112_2020316_+	gpW family protein	K7PM10	Enterobacteria_phage	4.7e-16	70.8
WP_000831820.1\|2020312_2021893_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	1.2e-188	62.8
WP_046722467.1\|2021882_2023379_+	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	1.3e-97	52.4
WP_000011260.1\|2023391_2023739_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
WP_046722466.1\|2023793_2024822_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.3e-114	61.1
WP_000201485.1\|2024879_2025245_+	DNA-packaging protein FI	NA	NA	NA	NA
WP_000083293.1\|2025255_2025633_+\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	1.5e-28	55.6
WP_000677089.1\|2025619_2026198_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
WP_000033885.1\|2026194_2026596_+\|tail	tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
WP_000971954.1\|2026603_2027350_+	Ig-like domain-containing protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
WP_046722465.1\|2027400_2027796_+\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	1.7e-30	55.7
WP_077906431.1\|2027792_2028131_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.0e-31	62.4
WP_046722464.1\|2028102_2031144_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	2.3e-287	63.9
WP_000447370.1\|2031146_2031476_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	7.3e-43	71.3
WP_023187580.1\|2031485_2032184_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	9.3e-104	75.9
WP_000662740.1\|2032190_2032928_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.2e-128	84.6
WP_006669493.1\|2032825_2033473_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	7.1e-90	78.6
WP_046722463.1\|2033535_2036898_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	80.1
WP_046722462.1\|2036936_2037179_+	hypothetical protein	NA	NA	NA	NA
WP_078097278.1\|2037234_2039871_+\|tail	prophage tail fiber N-terminal domain-containing protein	Q6K1H2	Salmonella_virus	1.5e-130	62.4
WP_078097282.1\|2039951_2040407_+\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	2.9e-58	73.0
WP_046722460.1\|2040410_2040929_-\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	3.5e-47	52.6
WP_046722459.1\|2040943_2042212_-	hypothetical protein	A0A192Y7M1	Salmonella_phage	4.4e-136	62.6
WP_046722540.1\|2042240_2042810_+	recombinase family protein	A0A1S6L009	Salmonella_phage	1.2e-85	87.6
WP_023223471.1\|2042967_2043387_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
WP_023223470.1\|2043389_2044658_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	1.2e-234	94.1
WP_023223469.1\|2044742_2045174_+	hypothetical protein	NA	NA	NA	NA
WP_023223468.1\|2045199_2045871_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	3.4e-79	59.9
WP_023243953.1\|2046193_2046760_-	hydrolase	NA	NA	NA	NA
WP_001258633.1\|2047084_2048857_+\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_000653693.1\|2048950_2049403_+	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
WP_000907242.1\|2049432_2050173_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_000022509.1\|2050209_2050731_+	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.6e-10	35.1
WP_000716750.1\|2050732_2051332_-	YebB family permuted papain-like enzyme	NA	NA	NA	NA
WP_001597478.1\|2052000_2052897_-	DUF4034 domain-containing protein	NA	NA	NA	NA
WP_000580335.1\|2053316_2053928_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_000568504.1\|2053936_2054947_+	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	2.4e-07	25.9
WP_000571508.1\|2055025_2055811_-	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
WP_000203023.1\|2055807_2056563_-	zinc ABC transporter ATP-binding protein ZnuC	G3M9Y6	Bacillus_virus	8.5e-18	29.4
WP_000939597.1\|2056641_2057586_+	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
WP_001184032.1\|2057601_2058921_+	murein DD-endopeptidase MepM	A8ATH6	Listeria_phage	2.6e-14	40.9
WP_000448401.1\|2059037_2060009_+	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
WP_000091156.1\|2060081_2061524_-	pyruvate kinase	NA	NA	NA	NA
WP_001056720.1\|2061647_2062517_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_000301704.1\|2062858_2064334_+	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	5.8e-79	37.3
WP_001069124.1\|2064568_2066380_+	phosphogluconate dehydratase	NA	NA	NA	NA
WP_023243915.1\|2066417_2067059_+	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_000173429.1\|2067158_2068337_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
WP_000257723.1\|2068467_2068758_+	DNA damage-inducible protein YebG	NA	NA	NA	NA
WP_023243914.1\|2068825_2069179_+	hypothetical protein	NA	NA	NA	NA
WP_023243913.1\|2069272_2069932_+	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_000936990.1\|2070145_2072197_+	oligopeptidase B	NA	NA	NA	NA
WP_000944282.1\|2072231_2072930_-	exodeoxyribonuclease X	Q6UAU3	Klebsiella_phage	2.8e-07	40.4
WP_000100257.1\|2072953_2073610_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_000856224.1\|2073717_2073948_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
WP_000168393.1\|2074085_2074460_+	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_072101102.1\|2074460_2075336_+	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_000722368.1\|2075352_2075706_+	YebY family protein	NA	NA	NA	NA
2075927:2075949	attL	NA	NA	NA	NA
WP_046722458.1\|2076079_2077159_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	A0A2H4IYC8	uncultured_Caudovirales_phage	1.2e-105	55.2
WP_031603794.1\|2077139_2077412_-	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.8e-10	39.7
WP_046722457.1\|2077472_2077901_-	hypothetical protein	NA	NA	NA	NA
WP_046722456.1\|2077897_2079979_-	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	8.7e-198	51.5
WP_001524382.1\|2079975_2080233_-	hypothetical protein	NA	NA	NA	NA
WP_000276802.1\|2080326_2080506_-	DUF1187 family protein	A0A0U2QL97	Escherichia_phage	4.3e-13	62.1
WP_023220247.1\|2081155_2081488_-	hypothetical protein	S4TNP2	Salmonella_phage	4.4e-19	80.3
WP_001033921.1\|2081480_2081801_-	hypothetical protein	A0A222YY67	Escherichia_phage	3.6e-34	60.2
WP_023220248.1\|2081836_2082667_-	recombination protein RecT	A0A1P8DTF2	Proteus_phage	1.3e-104	72.0
WP_046722455.1\|2082659_2085350_-	exodeoxyribonuclease VIII	Q9QF34	Lambdoid_phage	3.7e-116	75.6
WP_000799629.1\|2085490_2085826_-	hypothetical protein	NA	NA	NA	NA
WP_000682660.1\|2085901_2086108_-	cell division inhibitor protein	I6PBM9	Cronobacter_phage	3.0e-10	45.6
WP_000103933.1\|2086112_2086388_-	hypothetical protein	NA	NA	NA	NA
WP_024135672.1\|2086648_2086828_+	hypothetical protein	NA	NA	NA	NA
WP_023165607.1\|2087271_2087697_-	helix-turn-helix domain-containing protein	K7PH71	Enterobacterial_phage	9.3e-14	56.3
WP_001033909.1\|2087794_2088049_+	helix-turn-helix transcriptional regulator	K7PKH4	Enterobacteria_phage	1.2e-16	59.4
WP_046722454.1\|2088035_2088530_+	hypothetical protein	NA	NA	NA	NA
WP_046722453.1\|2088577_2089585_+	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	3.2e-129	70.2
WP_176206730.1\|2089496_2090039_+	replication protein	A0A0U2JGJ0	Escherichia_phage	2.9e-68	76.2
WP_000089421.1\|2090051_2090447_+	DUF977 family protein	A0A088CBK9	Shigella_phage	1.7e-17	38.1
WP_023892812.1\|2090443_2090716_+	hypothetical protein	NA	NA	NA	NA
WP_001597144.1\|2090919_2091075_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.2e-14	84.3
WP_000911590.1\|2091325_2091574_+	hypothetical protein	NA	NA	NA	NA
WP_022742730.1\|2091637_2092237_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	5.0e-98	83.9
WP_021000145.1\|2092233_2092428_+	hypothetical protein	S4TNP0	Salmonella_phage	6.1e-13	61.5
WP_000861020.1\|2092424_2092706_+	DUF1364 family protein	K7P7Q1	Enterobacteria_phage	1.7e-35	79.1
WP_042847930.1\|2092702_2093257_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	2.8e-63	64.6
WP_023220365.1\|2093502_2093679_+	type II toxin-antitoxin system HicA family toxin	A0A0M3LQ86	Mannheimia_phage	1.2e-12	60.3
WP_001270289.1\|2093729_2094137_+	type II toxin-antitoxin system HicB family antitoxin	F1C593	Cronobacter_phage	1.4e-38	63.0
WP_001525456.1\|2094286_2094589_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_001525444.1\|2094566_2095106_+	lysozyme	K7PLY1	Enterobacteria_phage	1.3e-76	70.6
WP_046722451.1\|2095206_2095677_+\|lysis	lysis protein	Q56118	Enterobacteria_phage	2.9e-61	79.2
WP_046722450.1\|2095750_2095954_-	hypothetical protein	NA	NA	NA	NA
WP_046722449.1\|2096033_2096426_-	hypothetical protein	NA	NA	NA	NA
WP_133177249.1\|2096466_2096817_-	hypothetical protein	NA	NA	NA	NA
WP_046722447.1\|2097145_2097346_+	hypothetical protein	NA	NA	NA	NA
WP_046722446.1\|2097349_2097979_+	hypothetical protein	A0A0M3ULJ9	Salmonella_phage	1.5e-108	98.6
WP_046722445.1\|2097981_2099601_+	bacteriophage TerL protein	A0A0M5M1R6	Salmonella_phage	1.3e-260	81.0
WP_046722444.1\|2099600_2101121_+	DUF1073 domain-containing protein	A0A2R3UAL5	Myoviridae_environmental_samples	3.3e-106	44.9
WP_001525462.1\|2101161_2101851_+\|head	head morphogenesis protein	H9C0V1	Aeromonas_phage	4.5e-58	50.0
WP_023220053.1\|2101847_2103194_+	DUF2213 domain-containing protein	A0A219YCD3	Aeromonas_phage	4.2e-68	37.2
WP_046722443.1\|2103195_2103678_+	hypothetical protein	A0A1X9SFC3	Acinetobacter_phage	2.4e-26	48.8
WP_001031913.1\|2103677_2104706_+	hypothetical protein	A0A219YBB0	Aeromonas_phage	2.3e-82	48.7
WP_046722442.1\|2104709_2105057_+	hypothetical protein	A0A1X9SFA9	Acinetobacter_phage	9.6e-09	36.3
WP_000537613.1\|2105063_2105519_+	DUF4054 domain-containing protein	H9C0W0	Aeromonas_phage	9.6e-17	46.0
WP_001525439.1\|2105512_2106097_+	hypothetical protein	H9C0W2	Aeromonas_phage	7.2e-17	30.6
WP_001048640.1\|2106093_2106459_+	hypothetical protein	A0A077KAW7	Edwardsiella_phage	2.0e-20	40.5
WP_001525438.1\|2106443_2106989_+	hypothetical protein	NA	NA	NA	NA
WP_001525460.1\|2106969_2108454_+	DUF3383 domain-containing protein	A0A077KGV4	Edwardsiella_phage	4.7e-89	38.4
WP_000016414.1\|2108454_2108901_+	hypothetical protein	Q2NPD1	Xanthomonas_phage	4.8e-21	40.4
WP_000101348.1\|2108900_2109305_+	hypothetical protein	H9C0W7	Aeromonas_phage	1.8e-19	44.8
WP_000228830.1\|2109346_2109529_+	hypothetical protein	NA	NA	NA	NA
WP_046722441.1\|2109512_2111684_+	transglycosylase SLT domain-containing protein	A0A0M4REK7	Salmonella_phage	1.1e-49	67.1
WP_023219641.1\|2111680_2112391_+	hypothetical protein	A0A077KGW3	Edwardsiella_phage	6.5e-28	34.6
WP_001525448.1\|2112390_2112693_+	hypothetical protein	A0A077K9U4	Edwardsiella_phage	7.0e-24	49.5
WP_001525442.1\|2112689_2113559_+	hypothetical protein	A0A077KC17	Edwardsiella_phage	4.1e-32	33.1
WP_023219640.1\|2113539_2114217_+	hypothetical protein	A0A077KAY0	Edwardsiella_phage	4.1e-32	36.4
WP_001191865.1\|2114229_2114586_+	hypothetical protein	A0A077KCA1	Edwardsiella_phage	1.6e-19	49.1
WP_023219639.1\|2114582_2115824_+\|plate	baseplate J/gp47 family protein	A0A077KGW9	Edwardsiella_phage	9.1e-102	49.9
WP_022742713.1\|2115825_2116428_+	DUF2612 domain-containing protein	H9C0Y0	Aeromonas_phage	5.9e-30	43.2
WP_046722440.1\|2116417_2117878_+\|tail	tail fiber protein	A0A0M3ULH6	Salmonella_phage	2.1e-44	75.8
WP_046722439.1\|2117874_2118699_+	macro domain-containing protein	A0A0M4QWS3	Salmonella_phage	6.8e-146	91.2
WP_001525039.1\|2118688_2119258_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.1e-89	85.7
WP_046722438.1\|2119408_2120263_+	protein YibB	NA	NA	NA	NA
WP_046722437.1\|2120335_2121877_-	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_020438172.1\|2122648_2123728_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	6.3e-99	52.0
WP_023244250.1\|2123724_2124831_-	PD-(D/E)XK nuclease-like domain-containing protein	Q9QF34	Lambdoid_phage	1.4e-53	65.0
WP_001013467.1\|2124861_2125092_+	hypothetical protein	Q8HA86	Salmonella_phage	6.1e-28	93.7
WP_001050883.1\|2125145_2125679_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	5.4e-11	43.0
WP_000789530.1\|2125935_2126103_-	lytic enzyme	NA	NA	NA	NA
WP_001521334.1\|2126167_2126356_-	hypothetical protein	NA	NA	NA	NA
WP_000348541.1\|2126410_2126902_+	DUF1441 family protein	Q9EYD0	Enterobacteria_phage	7.1e-42	56.2
WP_023244117.1\|2127454_2128051_+	hypothetical protein	Q1MVL8	Enterobacteria_phage	7.8e-35	43.1
2134621:2134643	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2915508 : 3009644

102

Salmonella_phage(58.06%)

tRNA,protease,head,tail,holin,terminase,capsid,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000938188.1\|2915508_2916189_+\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	1.6e-84	72.4
WP_000374046.1\|2916863_2917523_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
WP_000904446.1\|2917609_2917939_+	sulfurtransferase TusE	NA	NA	NA	NA
WP_023243627.1\|2917935_2918217_-	acylphosphatase	NA	NA	NA	NA
WP_000548091.1\|2918265_2919045_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000859416.1\|2919070_2919619_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_000140480.1\|2919833_2921045_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000561983.1\|2921102_2921420_+	heat shock protein HspQ	NA	NA	NA	NA
WP_001537782.1\|2921464_2921878_-	CoA-binding protein	NA	NA	NA	NA
WP_000847732.1\|2922051_2922714_+	DUF2057 family protein	NA	NA	NA	NA
WP_000424187.1\|2922808_2923267_+	methylglyoxal synthase	NA	NA	NA	NA
WP_024155604.1\|2923302_2925357_-	DNA helicase IV	A7KV33	Bacillus_phage	6.5e-20	27.6
WP_023243628.1\|2925480_2925927_+	YccF domain-containing protein	NA	NA	NA	NA
WP_000950869.1\|2925945_2928099_+	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001202375.1\|2928085_2928691_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_000288732.1\|2928907_2929417_+	cell division inhibitor SulA	NA	NA	NA	NA
WP_001670727.1\|2929773_2930826_+	porin OmpA	NA	NA	NA	NA
WP_000877172.1\|2930897_2931350_-	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_023242978.1\|2931535_2933296_+\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000227928.1\|2933364_2933883_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_001537784.1\|2933982_2934150_-	ribosome modulation factor	NA	NA	NA	NA
WP_000759136.1\|2934405_2934969_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_000433416.1\|2934965_2936606_-	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_000333152.1\|2936610_2937864_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000053044.1\|2937878_2939786_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
WP_001086481.1\|2939798_2941907_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_000224073.1\|2942005_2943115_+	YcbX family protein	NA	NA	NA	NA
WP_001220671.1\|2943111_2943654_-	cell division protein ZapC	NA	NA	NA	NA
WP_000291723.1\|2943819_2944830_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_023242979.1\|2945037_2947650_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.6
WP_000497440.1\|2948076_2948283_+	DinI-like family protein	S4TNM0	Salmonella_phage	1.8e-31	100.0
WP_000776343.1\|2948975_2950178_+	multidrug effflux MFS transporter	S4TR35	Salmonella_phage	6.3e-209	100.0
WP_001805559.1\|2950392_2950551_+	DinI-like family protein	S4TND2	Salmonella_phage	5.8e-22	100.0
WP_023137449.1\|2950619_2951750_-\|tail	tail fiber domain-containing protein	S4TSP4	Salmonella_phage	4.4e-204	100.0
WP_001113925.1\|2951760_2952720_-	hypothetical protein	H6WRW5	Salmonella_phage	9.6e-184	100.0
WP_001110473.1\|2952728_2955449_-	DUF1983 domain-containing protein	S4TTF5	Salmonella_phage	0.0e+00	100.0
WP_000682267.1\|2955448_2955847_-	hypothetical protein	S4TR39	Salmonella_phage	8.8e-75	100.0
WP_000967282.1\|2955853_2956438_-	hypothetical protein	S4TND4	Salmonella_phage	1.5e-107	100.0
WP_010835817.1\|2956437_2957031_-	hypothetical protein	S4TSP7	Salmonella_phage	1.9e-110	99.5
WP_000064923.1\|2957196_2957409_+	hypothetical protein	NA	NA	NA	NA
WP_000171561.1\|2957447_2957759_-	hypothetical protein	S4TNM6	Salmonella_phage	1.7e-36	80.2
WP_023137450.1\|2957804_2961119_-\|tail	phage tail tape measure protein	S4TTF9	Salmonella_phage	0.0e+00	99.9
WP_000404385.1\|2961165_2961501_-	zinc ribbon domain-containing protein	S4TR42	Salmonella_phage	7.0e-57	100.0
WP_024134502.1\|2961557_2961836_-	DUF4035 domain-containing protein	S4TND7	Salmonella_phage	1.9e-44	100.0
WP_001129939.1\|2961859_2962231_-\|tail	phage tail protein	S4TSQ0	Salmonella_phage	3.0e-61	94.2
WP_046722419.1\|2962258_2962963_-	immunoglobulin domain-containing protein	K7PHL2	Enterobacterial_phage	2.2e-92	73.9
WP_001648721.1\|2963019_2963367_-	DUF3168 domain-containing protein	S4TTG3	Salmonella_phage	5.5e-57	96.5
WP_010835820.1\|2963363_2963813_-	HK97 gp10 family phage protein	S4TR46	Salmonella_phage	2.5e-73	96.6
WP_020898872.1\|2963809_2964148_-\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	6.6e-39	70.5
WP_001648719.1\|2964157_2964484_-\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	5.2e-49	85.2
WP_001648718.1\|2964483_2964681_-	hypothetical protein	K7PHI6	Enterobacteria_phage	4.9e-10	66.0
WP_001648716.1\|2964724_2965942_-\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	5.8e-202	89.6
WP_000039020.1\|2965951_2966800_-\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	1.7e-131	87.9
WP_000002707.1\|2966813_2968118_-\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	6.2e-218	85.9
WP_023194832.1\|2968117_2969860_-\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	9.7e-142	45.2
WP_000919036.1\|2969813_2970278_-\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	7.4e-49	62.7
WP_023137451.1\|2970410_2970755_-	HNH endonuclease	K7P7P6	Enterobacteria_phage	3.9e-47	73.9
WP_000495546.1\|2970822_2971200_-	hypothetical protein	Q6UAR9	Klebsiella_phage	1.2e-41	66.1
WP_001050802.1\|2971242_2971782_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	3.7e-07	46.6
WP_001075994.1\|2971778_2972393_-	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	2.2e-109	94.6
WP_000226307.1\|2972392_2972674_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.6e-36	80.6
WP_001294874.1\|2972660_2973050_-\|holin	phage holin family protein	K7PHB9	Enterobacterial_phage	1.8e-40	71.0
WP_000658039.1\|2973139_2973328_-	hypothetical protein	NA	NA	NA	NA
WP_001648707.1\|2973832_2974630_-	antitermination protein	H6WRZ1	Salmonella_phage	2.0e-150	99.6
WP_001648706.1\|2974619_2974766_-	YlcG family protein	H6WRZ0	Salmonella_phage	1.5e-19	100.0
WP_023136402.1\|2974762_2975404_-	recombination protein NinG	H6WRY9	Salmonella_phage	1.3e-115	99.5
WP_023136401.1\|2975406_2975613_-	hypothetical protein	H6WRY8	Salmonella_phage	7.8e-35	100.0
WP_023136400.1\|2975612_2976212_-	DUF1367 family protein	H6WRY7	Salmonella_phage	2.0e-107	97.5
WP_001217668.1\|2976617_2976851_-	DinI family protein	H6WRY5	Salmonella_phage	4.7e-36	98.7
WP_000062345.1\|2977180_2978326_-	ImmA/IrrE family metallo-endopeptidase	A0A0A7RTT7	Clostridium_phage	2.7e-44	32.7
WP_023137432.1\|2978322_2978937_-	hypothetical protein	NA	NA	NA	NA
WP_001648689.1\|2979416_2979701_-	hypothetical protein	Q1MVF7	Enterobacteria_phage	2.3e-16	46.5
WP_000208078.1\|2979697_2980123_-	HNH endonuclease	C6ZR29	Salmonella_phage	3.0e-65	84.6
WP_046722418.1\|2980133_2980889_-	hypothetical protein	H6WRY1	Salmonella_phage	1.3e-148	98.8
WP_023136498.1\|2981025_2981718_-	phage replication protein P	G8C7U6	Escherichia_phage	5.6e-77	58.9
WP_020843826.1\|2981714_2982620_-	replication protein	A0A0M5M7Y1	Salmonella_phage	4.5e-175	99.3
WP_001648682.1\|2982711_2983035_-	bacteriophage CII	H6WRX6	Salmonella_phage	7.2e-27	59.1
WP_001555460.1\|2983069_2983297_-	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	1.7e-14	45.9
WP_000981510.1\|2983402_2983837_+	helix-turn-helix domain-containing protein	H6WRX4	Salmonella_phage	2.5e-14	38.2
WP_000186242.1\|2984021_2984222_+	cell division protein FtsZ	G8C7T2	Escherichia_phage	2.4e-12	48.4
WP_000995352.1\|2984312_2984609_+	host-nuclease inhibitor protein Gam	A0A0M5M5Z9	Salmonella_phage	1.1e-48	100.0
WP_001648679.1\|2984614_2985400_+	phage recombination protein Bet	A0A0M4RD39	Salmonella_phage	1.4e-148	99.2
WP_001648676.1\|2985396_2986077_+	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	1.3e-129	97.3
WP_001648675.1\|2986073_2986943_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0M4R347	Salmonella_phage	1.3e-158	95.2
WP_023137216.1\|2986948_2987188_+	DUF4060 family protein	S4TR31	Salmonella_phage	2.8e-36	96.2
WP_000065276.1\|2987228_2987477_+	excisionase family protein	S4TND0	Salmonella_phage	4.7e-42	100.0
WP_001262307.1\|2987521_2988814_+	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	3.4e-253	100.0
WP_000191404.1\|2989008_2990211_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_023243872.1\|2990291_2991725_-	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_023243871.1\|2991970_2993185_-	diaminopropionate ammonia-lyase	NA	NA	NA	NA
WP_046722417.1\|2993502_2993964_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_023243869.1\|2994164_2995565_+\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	1.3e-80	35.6
WP_153274566.1\|2995729_2995888_-	hypothetical protein	NA	NA	NA	NA
WP_000977709.1\|2996171_2997263_+	porin OmpF	Q1MVN1	Enterobacteria_phage	1.7e-99	51.7
WP_000462653.1\|2997447_2998638_+	aspartate transaminase	NA	NA	NA	NA
WP_001109471.1\|2998699_2999347_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_000357052.1\|2999374_2999923_-	YcbK family protein	A0A0K1LKR7	Rhodobacter_phage	1.2e-05	33.7
WP_000925888.1\|3000182_3002030_-	L,D-transpeptidase	NA	NA	NA	NA
WP_000572733.1\|3002374_3006841_-	chromosome partition protein MukB	NA	NA	NA	NA
WP_000060025.1\|3006840_3007545_-	chromosome partition protein MukE	NA	NA	NA	NA
WP_001288828.1\|3007525_3008848_-	chromosome partition protein MukF	NA	NA	NA	NA
WP_001154028.1\|3008840_3009644_-\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA

DBSCAN-SWA_8

3081200 : 3090282

Ralstonia_phage(16.67%)

protease,integrase

attL 3079593:3079605|attR 3098778:3098790

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3079593:3079605	attL	NA	NA	NA	NA
WP_024155556.1\|3081200_3082442_-\|integrase	site-specific integrase	A0A077KET4	Ralstonia_phage	2.5e-75	40.7
WP_023243338.1\|3082969_3083347_+\|integrase	phage integrase	NA	NA	NA	NA
WP_001117984.1\|3083508_3083706_+	hypothetical protein	NA	NA	NA	NA
WP_000934064.1\|3083918_3086195_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_000520789.1\|3086225_3086546_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000447499.1\|3086869_3087091_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000125893.1\|3087220_3089167_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	9.1e-40	42.3
WP_023202044.1\|3089163_3090282_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9
3098778:3098790	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3444171 : 3488906

Salmonella_phage(61.54%)

coat,head,protease,holin,lysis,portal,integrase

attL 3446055:3446072|attR 3494308:3494325

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023243093.1\|3444171_3445497_-	pyridine nucleotide-disulfide oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	1.8e-103	46.5
WP_023243092.1\|3445712_3446567_+	AraC family transcriptional regulator	NA	NA	NA	NA
3446055:3446072	attL	NA	NA	NA	NA
WP_046722403.1\|3447291_3448344_+	acyltransferase	A9YX16	Burkholderia_phage	1.2e-25	28.8
WP_046722402.1\|3448353_3450183_-\|head	phage head-binding domain-containing protein	Q0H8C6	Salmonella_phage	1.5e-241	67.1
WP_046722401.1\|3450283_3451186_-	antirepressor	Q0H8C7	Salmonella_phage	8.2e-161	92.0
WP_001161120.1\|3451254_3451416_-	Arc family DNA-binding protein	B9UDL5	Salmonella_phage	3.8e-21	94.3
WP_099554642.1\|3451542_3451752_+	Arc family DNA-binding protein	I6R0M0	Salmonella_phage	1.2e-30	100.0
WP_000437781.1\|3451754_3451988_+	hypothetical protein	I6S5X8	Salmonella_phage	1.7e-38	100.0
WP_016049822.1\|3451984_3452194_+	hypothetical protein	I6R975	Salmonella_phage	3.5e-30	100.0
WP_000151196.1\|3452168_3452354_-	hypothetical protein	I6RSG3	Salmonella_phage	1.1e-08	100.0
WP_022630937.1\|3452379_3452679_+	hypothetical protein	NA	NA	NA	NA
WP_040079452.1\|3452724_3454893_-	hypothetical protein	A0A0A0P1R1	Enterobacteria_phage	8.6e-47	28.8
WP_046722400.1\|3454877_3456227_-	phage DNA ejection protein	A0A0M5M1J8	Salmonella_phage	2.3e-111	50.4
WP_046722399.1\|3456236_3456911_-	hypothetical protein	G5DA80	Enterobacteria_phage	5.5e-53	68.1
WP_000403515.1\|3456885_3457365_-	DUF2824 family protein	Q2A0B3	Sodalis_phage	8.4e-64	73.4
WP_046722398.1\|3457364_3458213_-	Packaged DNA stabilization protein gp26	Q716G6	Shigella_phage	1.1e-103	99.6
WP_046722397.1\|3458212_3459631_-	packaged DNA stabilization protein gp10	A0A075B8I2	Enterobacteria_phage	1.4e-276	99.4
WP_001166098.1\|3459590_3460091_-	packaged DNA stabilization gp4 family protein	I1TEJ0	Salmonella_phage	5.5e-90	99.4
WP_000684729.1\|3460074_3460284_-	hypothetical protein	A0A192Y697	Salmonella_phage	1.3e-32	100.0
WP_046722396.1\|3460322_3461615_-\|coat	coat protein	I1TEI8	Salmonella_phage	1.6e-242	99.5
WP_000433852.1\|3461614_3462526_-	scaffold protein	A0A192Y6T4	Salmonella_phage	4.9e-161	100.0
WP_046722395.1\|3462539_3464717_-\|portal	portal protein	Q5C835	Enterobacteria_phage	0.0e+00	99.2
WP_046722394.1\|3464716_3466165_-	DNA packaging protein	Q2A0C1	Sodalis_phage	2.7e-206	71.3
WP_045718261.1\|3466133_3466637_-	hypothetical protein	A0A2K8HN72	Pseudomonas_phage	7.3e-26	47.8
WP_046722393.1\|3466649_3467054_-	hypothetical protein	C6ZR73	Salmonella_phage	2.0e-66	98.5
WP_046722392.1\|3467053_3467443_-	hypothetical protein	Q76H27	Enterobacteria_phage	4.3e-74	98.4
WP_000808099.1\|3467446_3467689_-	DUF2560 family protein	Q76H60	Enterobacteria_phage	1.7e-33	100.0
WP_046722391.1\|3468039_3468528_-	GIY-YIG nuclease family protein	K7P7S3	Enterobacteria_phage	3.4e-84	96.9
WP_010835562.1\|3468736_3469204_-\|lysis	lysis protein	Q76H63	Enterobacteria_phage	1.4e-68	88.4
WP_024157166.1\|3469292_3469790_-	lysozyme	I6S1V9	Salmonella_phage	7.1e-90	98.2
WP_024157167.1\|3469767_3469971_-\|holin	phage holin family protein	O80287	Bacteriophage	1.2e-32	97.0
WP_024157168.1\|3470507_3471281_-	antitermination protein	Q76H66	Enterobacteria_phage	9.9e-131	98.4
WP_023994514.1\|3471277_3471457_-	hypothetical protein	A0A0M4QWY9	Salmonella_phage	1.3e-22	96.6
WP_071925160.1\|3471437_3471641_-	phage NinH family protein	Q5G8R8	Enterobacteria_phage	8.8e-31	94.0
WP_046722390.1\|3471637_3472246_-	recombination protein NinG	I6S604	Salmonella_phage	3.4e-94	96.0
WP_071925161.1\|3472220_3472400_-	NinF family protein	I6R994	Salmonella_phage	4.0e-27	94.9
WP_000113771.1\|3472396_3472579_-	NinE family protein	Q716C5	Shigella_phage	4.8e-28	98.3
WP_071925162.1\|3472545_3472719_-	protein ninD	C6ZR56	Salmonella_phage	7.5e-31	98.2
WP_046722389.1\|3472715_3473153_-	recombination protein NinB	C6ZR55	Salmonella_phage	3.8e-79	99.3
WP_001064628.1\|3473226_3473505_-	hypothetical protein	C6ZR54	Salmonella_phage	5.2e-50	100.0
WP_015995304.1\|3473505_3475386_-	toprim domain-containing protein	B9UDH8	Salmonella_phage	0.0e+00	100.0
WP_015995303.1\|3475496_3476345_-	replication protein	C6ZR51	Salmonella_phage	2.2e-155	100.0
WP_000166968.1\|3476331_3476493_-	hypothetical protein	I6R9C7	Salmonella_phage	1.0e-21	100.0
WP_000424138.1\|3476513_3476804_-	hypothetical protein	I6RSP4	Salmonella_phage	2.4e-45	100.0
WP_001059982.1\|3476937_3477147_-	helix-turn-helix transcriptional regulator	I6S1U2	Salmonella_phage	2.1e-35	100.0
WP_001104735.1\|3477256_3477910_+	LexA family transcriptional regulator	C6ZR47	Salmonella_phage	4.6e-129	100.0
WP_000968836.1\|3477909_3478380_+	hypothetical protein	B9UDH1	Salmonella_phage	3.6e-83	100.0
WP_000097748.1\|3478366_3478678_+	hypothetical protein	C6ZR45	Salmonella_phage	9.7e-45	100.0
WP_000834165.1\|3478814_3479018_-	hypothetical protein	A0A192Y6Q5	Salmonella_phage	9.1e-28	100.0
WP_046722388.1\|3479349_3479739_+	hypothetical protein	C6ZR44	Salmonella_phage	2.5e-37	85.6
WP_000213981.1\|3479817_3480012_+	Restriction inhibitor protein ral	E7C9Q6	Salmonella_phage	2.5e-30	100.0
WP_046722387.1\|3480095_3480809_+	hypothetical protein	Q5G8T6	Enterobacteria_phage	1.2e-77	78.4
WP_000776963.1\|3480960_3481275_+	Superinfection exclusion protein	Q76H37	Enterobacteria_phage	1.5e-56	100.0
WP_000141641.1\|3481359_3481518_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q76H38	Enterobacteria_phage	2.4e-23	100.0
WP_000156731.1\|3481498_3481687_+	DUF5444 family protein	I6S647	Salmonella_phage	3.7e-31	100.0
WP_046722386.1\|3481676_3481820_+	hypothetical protein	A0A1R3Y5R4	Salmonella_virus	2.1e-18	95.7
WP_046722385.1\|3481816_3482524_+	recombinase	I6R0N0	Salmonella_phage	1.3e-137	99.1
WP_046722384.1\|3482524_3483031_+	single-stranded DNA-binding protein	C6ZR36	Salmonella_phage	6.5e-91	98.8
WP_001016182.1\|3483039_3483588_+	3'-5' exoribonuclease	C6ZR35	Salmonella_phage	2.1e-106	100.0
WP_046722383.1\|3483603_3483897_+	DUF2856 family protein	A0A1R3Y5T7	Salmonella_virus	8.0e-49	96.9
WP_071925164.1\|3483907_3484078_+	DUF2737 family protein	I6S642	Salmonella_phage	7.9e-25	98.2
WP_046722382.1\|3484074_3484659_+	hypothetical protein	A5VWB1	Enterobacteria_phage	2.2e-53	63.9
WP_046722381.1\|3484655_3485300_+	hypothetical protein	Q1MVG0	Enterobacteria_phage	3.7e-131	98.6
WP_071925165.1\|3485296_3486202_+	ead/Ea22-like family protein	A0A1V0E5L5	Salmonella_phage	1.2e-135	86.3
WP_015995294.1\|3486203_3486422_+	DUF4014 family protein	B9UDM3	Salmonella_phage	4.9e-35	100.0
WP_015971081.1\|3487180_3487453_+	hypothetical protein	Q858C7	Salmonella_phage	2.4e-39	100.0
WP_046722380.1\|3487742_3488906_+\|integrase	site-specific integrase	B9UDL9	Salmonella_phage	3.9e-224	97.4
3494308:3494325	attR	NA	NA	NA	NA

DBSCAN-SWA_10

4476430 : 4521208

Burkholderia_phage(40.91%)

tRNA,holin,tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001182228.1\|4476430_4477429_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_023242904.1\|4477516_4478827_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_000416272.1\|4479073_4479589_+	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA
WP_001030592.1\|4479688_4479898_-	CsbD family protein	NA	NA	NA	NA
WP_010989093.1\|4479919_4480033_-	hypothetical protein	NA	NA	NA	NA
WP_001128113.1\|4480029_4481355_-	MATE family efflux transporter DinF	NA	NA	NA	NA
WP_000646079.1\|4481533_4482142_-	repressor LexA	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
WP_000002900.1\|4482250_4482619_-	diacylglycerol kinase	NA	NA	NA	NA
WP_000017360.1\|4482789_4485210_+	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
WP_000455249.1\|4485308_4486181_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_000019219.1\|4486194_4486692_-	chorismate lyase	NA	NA	NA	NA
WP_001749156.1\|4486872_4487790_-	maltose operon protein MalM	NA	NA	NA	NA
WP_046722532.1\|4487953_4489312_-	maltoporin	NA	NA	NA	NA
WP_000179176.1\|4489400_4490510_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
WP_000695415.1\|4490871_4492062_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
WP_023242906.1\|4492193_4493738_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
WP_020845801.1\|4493752_4494643_+	maltose ABC transporter permease MalG	NA	NA	NA	NA
WP_000982752.1\|4494808_4495219_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
WP_000750805.1\|4495361_4497458_-	YjbH domain-containing protein	NA	NA	NA	NA
WP_000977959.1\|4497457_4498195_-	capsule biosynthesis GfcC family protein	NA	NA	NA	NA
WP_122821798.1\|4498191_4498860_-	YjbF family lipoprotein	NA	NA	NA	NA
WP_001541297.1\|4498893_4499136_-	outer membrane protein	NA	NA	NA	NA
WP_000790028.1\|4499579_4501229_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_000136394.1\|4501573_4502923_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
WP_000615248.1\|4503053_4503401_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
WP_001226440.1\|4503976_4504264_+\|holin	putative holin	Q6QIC8	Burkholderia_phage	5.1e-16	48.1
WP_001270438.1\|4504266_4504872_+	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	6.5e-61	60.4
WP_000777266.1\|4504884_4505199_+	membrane protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
WP_000449433.1\|4505358_4505814_+	Gp37 family protein	NA	NA	NA	NA
WP_023242908.1\|4505810_4506008_+	hypothetical protein	Q6QIB1	Burkholderia_phage	6.6e-07	52.9
WP_023242909.1\|4505997_4507425_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	8.1e-195	71.2
WP_000907495.1\|4507424_4507949_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
WP_001003640.1\|4508000_4508318_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_001185654.1\|4508277_4508406_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_023242910.1\|4508502_4510857_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	3.1e-66	30.6
WP_023242911.1\|4510856_4511810_+\|tail	phage tail protein	A4JWL1	Burkholderia_virus	7.9e-37	51.5
WP_001269716.1\|4511809_4512019_+\|tail	tail protein X	A4JWL2	Burkholderia_virus	9.8e-17	60.3
WP_023244444.1\|4512006_4513050_+	phage late control D family protein	Q6QIA2	Burkholderia_phage	4.2e-76	45.1
WP_000679393.1\|4513059_4513782_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.9e-12	42.0
WP_000593182.1\|4514109_4514472_+	GtrA family protein	I1TED9	Salmonella_phage	1.2e-43	70.8
WP_000703633.1\|4514468_4515398_+	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	1.4e-150	84.1
WP_000632053.1\|4515397_4516945_+	hypothetical protein	B9UDL6	Salmonella_phage	3.8e-49	29.9
WP_001093501.1\|4517108_4517468_+	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
WP_001749150.1\|4517458_4518574_+\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	4.1e-101	52.0
WP_001749149.1\|4518566_4519199_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	1.9e-23	55.6
WP_000368203.1\|4519201_4520683_+\|tail	tail fiber protein	A0A0M3ULF6	Salmonella_phage	1.3e-51	51.7
WP_001177097.1\|4520692_4521208_+\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	3.4e-34	41.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP014707

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP007584

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection