CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011398	Listeria monocytogenes strain CFSAN008100 chromosome, complete genome	2 crisprs	DinG,cas3,WYL,casR,RT,DEDDh,csa3	0	0	7	0
NZ_CP011399	Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence	0 crisprs	csa3,cas5	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011398_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011398_1

511673-512257

Orphan

Consensus_repeat	Method
GATGTAAGTAATTTTGATACNAGTTCAGTAACTNATATG	CRT

7 spacers

The CRISPR arrays of NZ_CP011398_1

>merge|NZ_CP011398|1|511673-512257|CRT
GATTTGAGTGGTCTTGATACTAGTGCGGTAACTACTATGTGGGATATGTTTAACAGCTGTAGGGCACTTGAGGAACTGGATGTAAGTAATTTTGATACGAGTTCAGTAACTAATATGTCTTACATGTTTTATGATAATAGAAACCTTGAGGTGCTGGATGTAAGCAACCTTGATACCGGTTCAGTAACTAATATGTATGCCATGTTTGAAGATTGTACTAGTCTTGAAGAGCTGGATGTAAGTAATTTTGATACGAGTTCAGTAACTGATATGTATAGAGTGTTTAATGGCTGTGAAAAACTGAAGAAACTAGATGTAAGTAATTTCGATACCAGTTCCGCTACTGCAATGGTTCAAATGTTTAGAAATTGTAGCGCCCTTGAGAAGTTGGATGTAAGTAATTTTAATACGAGCTTAGTAACTGATATGCGTGCCATGTTTGCTGGTTGTACTAGTCTTGAAGCGTTAGATGTAAGTAATTTTGATACGAGTTCAGTAACTAATATGGCTGCCATGTTTTCTGATAATGAAAAACTGGAGAAGCTTGATTTAAGTACCTTTGATACCAGTTCAGTGACTAACATG

>NZ_CP011398|1|1|511673-512257|CRT
GATTTGAGTGGTCTTGATACTAGTGCGGTAACTACTATG	TGGGATATGTTTAACAGCTGTAGGGCACTTGAGGAACTG
GATGTAAGTAATTTTGATACGAGTTCAGTAACTAATATG	TCTTACATGTTTTATGATAATAGAAACCTTGAGGTGCTG
GATGTAAGCAACCTTGATACCGGTTCAGTAACTAATATG	TATGCCATGTTTGAAGATTGTACTAGTCTTGAAGAGCTG
GATGTAAGTAATTTTGATACGAGTTCAGTAACTGATATG	TATAGAGTGTTTAATGGCTGTGAAAAACTGAAGAAACTA
GATGTAAGTAATTTCGATACCAGTTCCGCTACTGCAATG	GTTCAAATGTTTAGAAATTGTAGCGCCCTTGAGAAGTTG
GATGTAAGTAATTTTAATACGAGCTTAGTAACTGATATG	CGTGCCATGTTTGCTGGTTGTACTAGTCTTGAAGCGTTA
GATGTAAGTAATTTTGATACGAGTTCAGTAACTAATATG	GCTGCCATGTTTTCTGATAATGAAAAACTGGAGAAGCTT
GATTTAAGTACCTTTGATACCAGTTCAGTGACTAACATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011398.2\|WP_046811179.1\|508876_510880_+\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NZ_CP011398.2\|WP_003725189.1\|502513_503797_+\|cytosine-permease	unknown	unknown	gnl\|CDD\|271377
NZ_CP011398.2\|WP_003725208.1\|520330_521434_+\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	unknown	unknown	gnl\|CDD\|237717
NZ_CP011398.2\|WP_023550585.1\|515043_515517_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011398.2\|WP_003725209.1\|521523_522003_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226231
NZ_CP011398.2\|WP_009929138.1\|498527_499676_-\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NZ_CP011398.2\|WP_003740428.1\|500783_502379_+\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225306
NZ_CP011398.2\|WP_003733207.1\|517809_518370_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379534
NZ_CP011398.2\|WP_003728093.1\|503797_504898_+\|DUF917-domain-containing-protein	unknown	unknown	gnl\|CDD\|226065
NZ_CP011398.2\|WP_003728986.1\|518479_520180_+\|oleate-hydratase	unknown	unknown	gnl\|CDD\|227060
NZ_CP011398.2\|WP_023550583.1\|515536_516022_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011398.2\|WP_003725775.1\|516430_516697_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011398.2\|WP_046811180.1\|513220_514978_+\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NZ_CP011398.2\|WP_003728092.1\|504890_506441_+\|hydantoinase/oxoprolinase-family-protein	unknown	unknown	gnl\|CDD\|223223
NZ_CP011398.2\|WP_003721242.1\|499680_500628_-\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP011398.2\|WP_003734632.1\|495499_496255_-\|DUF4866-family-protein	unknown	unknown	gnl\|CDD\|379782
NZ_CP011398.2\|WP_023550311.1\|507074_508613_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|368260
NZ_CP011398.2\|WP_003725186.1\|496371_498531_-\|transglutaminase	unknown	unknown	gnl\|CDD\|376628
NZ_CP011398.2\|WP_003721271.1\|522160_522526_+\|heme-oxygenase-IsdG	unknown	unknown	gnl\|CDD\|183970
NZ_CP011398.2\|WP_009930283.1\|516049_516355_+\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|273478

Protein	Function_ID	Function_description	E-value
NZ_CP011398.2\|WP_046811179.1\|508876_510880_+\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	1.33017e-30
NZ_CP011398.2\|WP_003725189.1\|502513_503797_+\|cytosine-permease	gnl\|CDD\|271377	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain. This NCS1 subfamily includes Escherichia coli CodB (cytosine permease), and the Saccharomyces cerevisiae transporters: Fcy21p (Purine-cytosine permease), and vitamin B6 transporter Tpn1. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	2.40318e-96
NZ_CP011398.2\|WP_003725208.1\|520330_521434_+\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	gnl\|CDD\|237717	PRK14455, PRK14455, ribosomal RNA large subunit methyltransferase N; Provisional.	0
NZ_CP011398.2\|WP_003725209.1\|521523_522003_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|226231	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown].	1.03205e-42
NZ_CP011398.2\|WP_009929138.1\|498527_499676_-\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	1.37557e-52
NZ_CP011398.2\|WP_003740428.1\|500783_502379_+\|PucR-family-transcriptional-regulator	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	2.42853e-59
NZ_CP011398.2\|WP_003733207.1\|517809_518370_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|379534	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region. This domain is a tetracycline repressor, domain 2, or C-terminus.	2.23521e-25
NZ_CP011398.2\|WP_003728093.1\|503797_504898_+\|DUF917-domain-containing-protein	gnl\|CDD\|226065	COG3535, COG3535, Uncharacterized conserved protein [Function unknown].	0
NZ_CP011398.2\|WP_003728986.1\|518479_520180_+\|oleate-hydratase	gnl\|CDD\|227060	COG4716, COG4716, Myosin-crossreactive antigen [Function unknown].	0
NZ_CP011398.2\|WP_009930283.1\|516049_516355_+\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|273478	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain. This model describes the LPXTG motif-containing region found at the C-terminus of many surface proteins of Streptococcus and Streptomyces species. Cleavage between the Thr and Gly by sortase or a related enzyme leads to covalent anchoring at the new C-terminal Thr to the cell wall. Hits that do not lie at the C-terminus or are not found in Gram-positive bacteria are probably false-positive. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region. [Cell envelope, Other].	1.67487e-05
NZ_CP011398.2\|WP_046811180.1\|513220_514978_+\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	5.56848e-29
NZ_CP011398.2\|WP_003728092.1\|504890_506441_+\|hydantoinase/oxoprolinase-family-protein	gnl\|CDD\|223223	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	1.15698e-106
NZ_CP011398.2\|WP_003721242.1\|499680_500628_-\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	7.47241e-102
NZ_CP011398.2\|WP_003734632.1\|495499_496255_-\|DUF4866-family-protein	gnl\|CDD\|379782	pfam16160, DUF4866, Domain of unknown function (DUF4866). This family consists of uncharacterized proteins around 250 residues in length and is mainly found in various human gut Firmicute species and abundant in human gut metagenomic datasets. The function of this family is unknown.	2.71521e-121
NZ_CP011398.2\|WP_023550311.1\|507074_508613_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|368260	pfam05043, Mga, Mga helix-turn-helix domain. M regulator protein trans-acting positive regulator (Mga) is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions. This domain is found in the centre of the Mga proteins. This family also contains a number of bacterial RofA transcriptional regulators that seem to be largely restricted to streptococci. These proteins have been shown to regulate the expression of important bacterial adhesins. This is presumably a DNA-binding domain.	1.01429e-19
NZ_CP011398.2\|WP_003725186.1\|496371_498531_-\|transglutaminase	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	4.40206e-28
NZ_CP011398.2\|WP_003721271.1\|522160_522526_+\|heme-oxygenase-IsdG	gnl\|CDD\|183970	PRK13316, PRK13316, heme oxygenase IsdG.	3.55164e-70

>NZ_CP011398.2|WP_046811179.1|508876_510880_+|BspA-family-leucine-rich-repeat-surface-protein
MKKFSMRVVLIISVLFIALGNANVSIAQERDTTNKLPEVEIGSLDTSDVIAEEVAQDKPAEVENLEEIPTTDDLMQNPNVLEKSVADSDDSDLTVVSSGAYWTLYYNSANGEYSLRMFGNVPSSKPSAWNSYLNSIKHIEIEEATLTGSFASYFRDTGFPVLESVRIEQCNLSGVTSFARAFEGDSESESPLEKVIIRDNYYQETPSLTNISRMFTLCRKLSELDVSGLNTSSVTKMDTIFSNANSLKELDVSHFDTSSVTDMSSMFAACNSLEELDVSNFDTSSVTNMKYMLSGLHLKKLDVSNFDTSSVNNMLHMFYVCNNLEELDLSNFDTSSVTNMFAMFAYCTSLKEIDVSNFDTSSVTTMSAMFFECSSLEALDLSNFDTSSVTTMASMFENSTALKSLYLDNFTDAASMTDMFKGTTSLTYLFVSHNLSTFNRLENTSWYDEKNWVQFSNLSQLQTYHRKQSEPTGYRKGAFLSLTMDAMGGEFEDAEEQKVQNKVSGEYWEEIVPVKEDYYFDGWYLDQNFTNKFDFSLPAAVSTTIYAKWVENYTVIIPASISLNEATELKVEGINRGSKALSVGLNRLATSVSESNELTLANTADTTVQCSAPLSWDGSENNPEKAILTLAPGSEITEGDAVMAIEAPENIQAGKYTGNLVFSINYE
>NZ_CP011398.2|WP_023550311.1|507074_508613_+|helix-turn-helix-domain-containing-protein
MREYLDSKSQKKVALLEKIFYAENHTSTQEELLNDLNITYPTLISTIKTINFDIERFGYKAFSIVHSAPNLSYTLKISDNCSIQLIINAYIRESPKFQILETLLLASFPNLQALAKKVHVSYSGIKKEIKELNEELRERNLSISTGNQVEITGDEFSLRIFYAFLFLVAYSGDRWPFSFVQYDEITDILESCPKEIYRANSIDKAMMIHYYVAMHLLRDRMNCQIDTTRQFKVALYKACTEESKKSESAFIKKVAKQLPNRNYKEMTYTTQIILSTIVAFGSYSSIEKMPSFFYMDEQLEEMGFMKLVDFASEQVNDNLSIPFSEKEMELLRYSFASINYRYFLLDNLINKFNNIVPGYTNLDRNIRKIHKVNHLEPLISQLVNLKEMDPLKPFEERLASDYLIILDKRIDFSIHTLPIKVTILSTISNETAVFDFMRYFSSYYNLEIINQVDPVVDLYISDFSVSPEVLTSLRINQPIIYVNTRWLESDYVKINDNLAKIARKKFIANKKN
>NZ_CP011398.2|WP_003728092.1|504890_506441_+|hydantoinase/oxoprolinase-family-protein
MYKIGIDVGGTNTDAVILDENQQLIHSVKMPTSEDIETGITESLHRVLSETGIDRSKVTHAMLGTTQCTNAIVERKKLAKVGVLRLGYPATASVLPYTAWPEDMVGFLSGKYKLTGGGYEYDGQVLSEINEAEIRETLASWKGEVESVAVVGVFSSLKNDQELAVQKIIEEELGADIPVSISSSVGSVGLIERENATILNAALFKVIAATSDGFEKALEQEGIAHAEIYLCQNDGTLMSLNYARQFPILTIACGPTNSIRGASYLAGLKDAMVLDVGGTTSDIGVLTDGFPRESSLAVDVGGVRTNFRMPDIISIGLGGGSIVREKDGDITIGPDSVGYRISEEALVFGGKTMTTTDIAVRLGRAEIGNPELVAHIPTDFAEKAYKKIAEMTEDAIDKMKTSSGSVSLVLVGGGSVIIPDEISGVAQIFRDKNGPVANAIGASISQISGQYEQIYIYSQIEREEALQDAEQKAREQATLAGAVTDSIEVVEVEEIPLAYHPGNATRLRVKVVGNLV
>NZ_CP011398.2|WP_003728093.1|503797_504898_+|DUF917-domain-containing-protein
MRYLDEQAIENIAIGAAFLGTGGGGDPYIGKMMALTAIKKHGPIKLLSPEEIADDDYFIPAAMMGAPSVLIEKFPKGDEFVRVFEKLGRYVGKEVKGTFPMEAGGVNSMIPIVVAAQLGLPMVDCDGMGRAFPELQMVTFHLDGISATPMAITDEKGNIGIMETIDNKWTERLARVTTVEMGASSLVSLYPCNGAQIKQSSIKNIVTLSEEIGKVIRETSMDEAEKLQKLLDVTHGYHLFEGKITDVVRETRAGFNFGRVKIDGLNKDTGSEVIVHFQNENLVAEKNGEPIAITPDLICMVDLETLMPVTTEALKYGKRVRVMALPADDAWRTDKGIETVGPRYFGYDVDFEPLEELVKKEERRHV
>NZ_CP011398.2|WP_003725189.1|502513_503797_+|cytosine-permease
MTEKKSVEQTQSWQSLAFVWTGAMICVPSLLVGGTLISGMPLWEAILIALLGYGVIVLFMIYQGMQSSDLGIPAVSVASQVFGEQGSKKIISILLAIACLGWFGIQANVCGAAFSQFLGIYGINLPVPVSSLIWGVIMLLSAIYGIRILSILNYIAVPVLLFVCIYGLVVSLNDGGLAIVENYKPAGSMSFMTGLAITIGSFALGAVIAGDYSQYTKSRKDVVKAAIVGILPSGVLMITVGAVLALTAGTADISVVFTNLGLPVLGIIGLILAAWTTNAVNAFSGGIAIINVFNISEKYHKVAVAVAGGLGTILAVIGILNHFVPIMSVLSAMVPPVAGVMIASYWIVQKGDKSKWAPVPGVNWLGVSSWLVGAVIAGIPVILTFFPELPQLPNQPLIGIILSLAVYLIGAKVLSGKTNNVENLEGK
>NZ_CP011398.2|WP_003740428.1|500783_502379_+|PucR-family-transcriptional-regulator
MSVKLADLMKLPSLKEAKVVSGKSGLSKLVSSISVLEYTEVALLEDDLFDNDEFYGSEIVVSAFVNIRDDVEAQCRTIERLHKVGEVALILYYVGIFVPKMDQKLIDFANELDFTIIVMPENEMSLRYSEVIYEVVEAIVKQEMTDTNFVTESLEQISSVRPPQRNIDTTLKILSDRTHTSLVLTDNSFQVINSITWPRTRHWDFERIIEASKQIGEHELVQLTLDERDFYTARKPIFQDGMQAMHLFMMKEKGVLTADVVMQITEVVQVFMNLWGRNYVEISTAELMKAILNDESVKMRRLGKILNVDVSSIKWMWLVKTEEIRDNEQVLAELKSFVASHFQVSLIDLFEDNIVVLLDNSVAQRDRTHTANEFAMMMKEHGIDLKITVCQGMEQTSDVQSAYSLVNEYKNAANAIYANKSIYSLQEIDFAAKCVEIVDRGELAIAEQMRPLKPLEDNDELIETLSVFLLEGESNYNQAAELLFLHKNTIKYRIQRINELLQYPATKIPESYNLYLAVAIRRILGGNNNNK
>NZ_CP011398.2|WP_003721242.1|499680_500628_-|MoxR-family-ATPase
MSIEPSIKIEEIINEVEKVIVGKRHVVKLSLTALLAGGHVLLEDVPGVGKTMMVRTLSKTIGVSFKRIQFTPDLLPADVTGVSIFNPETRDFEFRPGPVMGNIVLADEINRTAPRTQAALLEGMAENSVTVDGITRKLANPFFVMATQNPIEYEGTYALPEAQLDRFLLKINIGYPTVEEEMQLLTLKQYQDPLDQTQQVVTLSELLDLKNKAKQVFIDDVLKNYIIRLVDATRKHPSVALGISPRGSLAFMQAAQAFALIEGRDYVIPDDIQYLAPYIFTHRLILKSEAYYNEETAESIIASILKNTSVPVEKR
>NZ_CP011398.2|WP_009929138.1|498527_499676_-|DUF58-domain-containing-protein
MLKKRLLLAFRWIIMLIIYAGLWTYTLFQGDTASWFLTYFFSFILLLLFLSSIYPLKAWKVNRRFVKNTYHDGDLIDMQVSFTRKSRYPVGYLLFQQKIPASFGNVSARQQVVYPLFKKHFTVTLAGFVGVRGIHSFPPVDVETSDAFGLLERSRQLSSEKSLTIYPTYFPDVLEKISEASPENERNAAYWTLKKNSNLHSLREFSSGDRISLIDWKSSAKSDQLMTREFENSATSRLSVIFYGASHPNFELSLRAAYSFIRKISEDNGEIRVTLLGDQTSKFAPAKGTSRLQDISTAFAEIAPVDSLTLQESLDSNLHSGEKILLFTPCIDTMLMQKVTRLTDNKQLQIITFQSEHSKAMDAPAIFLEPASLLSRWEREAK
>NZ_CP011398.2|WP_003725186.1|496371_498531_-|transglutaminase
MKRYLTLVMLFILSVLLISEWIYPFAELTELSTANWIILFITLSLGSFFLRLKYYWTIPLHIVMIIFVSGIYYAKGGILAGNWFVSFFQITFNGFRDMVQFRSSDISMDFILIVFLIALWLLSYITTYSILRKQRVMSVLVLTVAYLAVINTFTDYNSNWAIVRTVLEGFLLLHLALASRIAAPNRISADSLKRNGLFYHIFVILLLAVFVFSSLMLPKKAPIFPDPVPTIKNALGINTTRTVGYSEDDTTLGGALKKDNATVFTARAEKGHYWRVESKTVYTGTGWANANSADVISFSSGDNFPIQLTEQTTGATNTAEISFASSNDYMPYPYGTQTVNGAVDSFSANLTIERVGPVDTIKNYTVQLKTPVYNIEKMQNADFSTLSNAFVSQYTQTPKDLPDRVTKLANKVTKDADSIYDKTKAIERYLSASGTFTYSTEDAKETPRGADYVDQFLFETQIGYCDNFSTSMVVMLRSLGIPARWAKGYTPGEGEKKENDAKTTYTITNNNAHSWPEVFFPGTGWVPFEPTATFSNPENFQEPTTETANKPETPNDSTSTPETPNTADKTPEQDNGSSSTGETPKKEEPKTETAASNFEIPSWVWWIPAGLVVTLLALAIIFRRRIRRYLLLRSLRNSPEFGKTYHRLMKLLASYGYVRESSETLRHFSTRVDAELTTTEFSRLTKMYEAQIYSNNLTEKVITAEETQLVQQVIARLTK
>NZ_CP011398.2|WP_003734632.1|495499_496255_-|DUF4866-family-protein
MTTIFPKEQNVAPLFEQILANPTACRRFKDVFLDNLESYQETRGFEKDDTLFAKIILSAYRQSDVSALLLGVCGRTLFELLRQAFLIPKKLTVDNPFFLTDKEGNFIAKKDDISNREQEKFQEIYQSDLHHSETTIFLVDDDDIIHSYEPDFSISTKRINKKRGILVLYSLPDTLKLGMTESEVYAFIWKTFLHIQEIIPSSRIFYGQETSENADELGVFLPIHHFEKKMLQNIEQVNELVDALREQMVNK
>NZ_CP011398.2|WP_046811180.1|513220_514978_+|BspA-family-leucine-rich-repeat-surface-protein
MKKFSMRVVLIISVLFIALGSANVSTAQERDTTNKLPEVELGSLDTSNIIAEEVAQEKPAEVEQLEEIPTTDELMQNPDVLEQPVADSDDTDLTVVSSGDFWTIYRNTVNNEYSLCMFGNVPSSRPTAWNTYLNRIKHIEIEEATLTGSFASYFSGDYFTVLESVKIEQCNLSGVTSFEKAFYNSGIEKVIIRDNDYPTAPSLLTTQYMFQLCRKLSELDLSGLDTSAITNIYGMFQFCSGLEELDLSHFDTSSVTNMYSMFSGCGSLEILDVSNWDTSSVTNMNRMFQNCTSLEELDLSTFDTSSMTDMGMMFNGCTALKSLYLDNFTDAAIMTDMFTGTTSLTYLFVSHNLSTFNNLENTSWYDEKNWVQFSNLSQLQTYHRNQSEPTGYRKGAFLSLTMDAMGGEFEDAEEQKVQNKISGEYWEEVIPVKEGHYFDGWYLDQNFTNKFDFSLPAAVSTTIYAKWVENYTVVIPASISLNEATELKVEGINRGSKTLSVGLNYGETTISGNNKLTLSNTADATVQCLVPLSWDGSENNPENAILTLAPGSEITEGDAVMEIKSPENIQAGKYTGNVVFSIKYE
>NZ_CP011398.2|WP_023550585.1|515043_515517_+|hypothetical-protein
MKKKRVVIISLLLLLVSVIGISSYFLFKDKINLLDVDPSAVEWNGKKQKDTSGEENTIAIPGFEKVTLYANETTQAVNFHNPEINDCYFKISLIHPDGSVLWISDLIEPGKGMYSIELEKPLAVGEYENAVLKYECFSLNDQSPLNGSEINLKLVVV
>NZ_CP011398.2|WP_023550583.1|515536_516022_+|hypothetical-protein
MNKLVLSTLSVAAMGMVIFSGGTAYAADKEGNTVVEYSVEGDYTLVVPEKVNLSNDNATEMSVKTINRNLEPGKEVEVTLSSGLSADGEIELQRVGATSDVITSSFKSNNSVVPMANPIIGSFSGYAMEETEVSKIQIGNPQGDKKAGAYQTTLTFTAAFK
>NZ_CP011398.2|WP_009930283.1|516049_516355_+|LPXTG-cell-wall-anchor-domain-containing-protein
MKRKLVLAMVLISFCGMFLLSPERVQASQTVVEVFISEDDLDVSEENIQEIPKKELAASSDKDNKQHTLPKAGDTVTNYTLLGLVLILIWLIMQRKRKKKE
>NZ_CP011398.2|WP_003725775.1|516430_516697_+|hypothetical-protein
MARIEYEEKIQKSLLVLYFRGSTIQSICREYGIPRYEFHKWMKLHDADKLETKEVKTFLQIRELKQQKNKLEEEILFLNEAINLLESP
>NZ_CP011398.2|WP_003733207.1|517809_518370_+|TetR-family-transcriptional-regulator
MAESLITKKAIAGGLMELCQHKRFEKISIADITNICGLNRQTFYYHFTDKYDLLTWTYENDFFHCLADGITLGNWDKHVLKMLESIKENADFYKNTVSADASILSFCFSKLTNSLFMDLFEKIDTNGAVNEADRVFYAEFFSYGCSGVLIKWITRGFKEAPETIANQLFRLAKDTEFLANSMYREN
>NZ_CP011398.2|WP_003728986.1|518479_520180_+|oleate-hydratase
MKNKKRTLVALTGAAIGTGIAAKKISEQKAAEKERAVDEAIKARYYGDKQVYFVGGGIASLAGAVYLIRDANFDGKNIHIIEGMHILGGSNDGAGSVEHGFVCRGGRMLNEETYENFWDLFSSIPSLDMPNFSVTEEILNFDHLHPTHAQARLVDKDRNILDAHSMGFNNNDRMLMTKLLATPEEKLDNLTIRDWFDEHFFETNFWYMWQTTFAFQKWSSLFEFRRYMNRMMLEFSRIDTLEGVTRTPLNQYESLILPLKTFLDKHHVDFTINQTVEDIDFKDAPGITATALHLSDGSTIELGPDDDVIMTNACMTDSATLGDMNTPAPKPEEKPISGELWYKVAQKKPNLGNPEPFFGHEEETNWQSFTVTCHGDKLLKRIERFTGNIPGSGALMTFKDSNWLMSTVVAAQPHFKAQDANTTIFWGYGLYPDRVGDFVKKPMKECTGEEILYELMCHLNWQDDFEEIKADIINVIPCYMPYIDAQFEPRAMSDRPAVVPEGSTNFAMISQFVEIPKDMVFTEEYSVRAARIAVYTLLDIDKKICPVTPHNRDPKVLAKATQTMFR
>NZ_CP011398.2|WP_003725208.1|520330_521434_+|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN
MEKSSIYGLTWTKLTEWLEAHGQKKFRATQVWDWLYRKRVKTFEEMSNVPKETIELLTANFVMNTLEEQVVQESTDGTTKYLFKLSDGNLIETVMMKQEYGLSVCVTTQVGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYLDGRNLEERVSHVVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNRRITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDIDAACGQLRSKQIKRVGVRERMKQKQAAAEE
>NZ_CP011398.2|WP_003725209.1|521523_522003_+|AraC-family-transcriptional-regulator
MEVEIVERNAFTAVGKKRTFSVENDAQKEKISQFWQEANTNGDAERINELAEFATIDGILGVCKMNGDKMDYYIAIESELTPPADMEKLIIPASKWAIFKSVGPLPSAIQKVWEYIYGEWFQTSNYAHGNAPELEVYTEGDTTAADYYSEVWIPVVEKE
>NZ_CP011398.2|WP_003721271.1|522160_522526_+|heme-oxygenase-IsdG
MIIVTNTIKVEKGAAEHVIRQFTGANGDGHPTKDIAEVEGFLGFELWHSKPEDKDYEEVVVTSKWESEEAQRNWVKSDSFKKAHGRTKDTREQREDRKGIVGNAIARFEVVHVQNPVIVEK

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Crispr_ID: NZ_CP011398_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011398_2

513893-514150

Orphan

Consensus_repeat	Method
GATACCAGTTCCGTTACTAATATG	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP011398_2

>merge|NZ_CP011398|2|513893-514150|CRISPRCasFinder
GATACGAGTGCTATAACTAATATATATGGCATGTTTCAATTTTGCTCTGGTCTTGAAGAGTTAGATTTAAGTCATTTTGATACCAGTTCCGTTACTAATATGTATTCCATGTTTTCGGGTTGTGGATCACTGGAGATTTTGGATGTAAGCAATTGGGATACGAGTTCCGTTACTAATATGAATAGAATGTTTCAAAATTGTACTAGTCTTGAAGAGCTAGATTTAAGTACCTTTGATACCAGTTCAATGACTGACATG

>NZ_CP011398|2|1|513893-514150|CRISPRCasFinder
GATACGAGTGCTATAACTAATATA	TATGGCATGTTTCAATTTTGCTCTGGTCTTGAAGAGTTAGATTTAAGTCATTTT
GATACCAGTTCCGTTACTAATATG	TATTCCATGTTTTCGGGTTGTGGATCACTGGAGATTTTGGATGTAAGCAATTGG
GATACGAGTTCCGTTACTAATATG	AATAGAATGTTTCAAAATTGTACTAGTCTTGAAGAGCTAGATTTAAGTACCTTT
GATACCAGTTCAATGACTGACATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011398.2\|WP_046811179.1\|508876_510880_+\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NZ_CP011398.2\|WP_003725189.1\|502513_503797_+\|cytosine-permease	unknown	unknown	gnl\|CDD\|271377
NZ_CP011398.2\|WP_003725208.1\|520330_521434_+\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	unknown	unknown	gnl\|CDD\|237717
NZ_CP011398.2\|WP_003725209.1\|521523_522003_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226231
NZ_CP011398.2\|WP_009929138.1\|498527_499676_-\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NZ_CP011398.2\|WP_023550585.1\|515043_515517_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011398.2\|WP_003733207.1\|517809_518370_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379534
NZ_CP011398.2\|WP_003728093.1\|503797_504898_+\|DUF917-domain-containing-protein	unknown	unknown	gnl\|CDD\|226065
NZ_CP011398.2\|WP_003728986.1\|518479_520180_+\|oleate-hydratase	unknown	unknown	gnl\|CDD\|227060
NZ_CP011398.2\|WP_023550583.1\|515536_516022_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011398.2\|WP_003731249.1\|522799_524563_+\|RNA-directed-DNA-polymerase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|238824
NZ_CP011398.2\|WP_003725775.1\|516430_516697_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011398.2\|WP_003740428.1\|500783_502379_+\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225306
NZ_CP011398.2\|WP_003728092.1\|504890_506441_+\|hydantoinase/oxoprolinase-family-protein	unknown	unknown	gnl\|CDD\|223223
NZ_CP011398.2\|WP_003721242.1\|499680_500628_-\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP011398.2\|WP_023550311.1\|507074_508613_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|368260
NZ_CP011398.2\|WP_003725186.1\|496371_498531_-\|transglutaminase	unknown	unknown	gnl\|CDD\|376628
NZ_CP011398.2\|WP_003721271.1\|522160_522526_+\|heme-oxygenase-IsdG	unknown	unknown	gnl\|CDD\|183970
NZ_CP011398.2\|WP_009930283.1\|516049_516355_+\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|273478
NZ_CP011398.2\|WP_026747115.1\|511015_513085_+\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794

Protein	Function_ID	Function_description	E-value
NZ_CP011398.2\|WP_046811179.1\|508876_510880_+\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	1.33017e-30
NZ_CP011398.2\|WP_003725189.1\|502513_503797_+\|cytosine-permease	gnl\|CDD\|271377	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain. This NCS1 subfamily includes Escherichia coli CodB (cytosine permease), and the Saccharomyces cerevisiae transporters: Fcy21p (Purine-cytosine permease), and vitamin B6 transporter Tpn1. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	2.40318e-96
NZ_CP011398.2\|WP_003725208.1\|520330_521434_+\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	gnl\|CDD\|237717	PRK14455, PRK14455, ribosomal RNA large subunit methyltransferase N; Provisional.	0
NZ_CP011398.2\|WP_003725209.1\|521523_522003_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|226231	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown].	1.03205e-42
NZ_CP011398.2\|WP_009929138.1\|498527_499676_-\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	1.37557e-52
NZ_CP011398.2\|WP_003740428.1\|500783_502379_+\|PucR-family-transcriptional-regulator	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	2.42853e-59
NZ_CP011398.2\|WP_003733207.1\|517809_518370_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|379534	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region. This domain is a tetracycline repressor, domain 2, or C-terminus.	2.23521e-25
NZ_CP011398.2\|WP_003728093.1\|503797_504898_+\|DUF917-domain-containing-protein	gnl\|CDD\|226065	COG3535, COG3535, Uncharacterized conserved protein [Function unknown].	0
NZ_CP011398.2\|WP_003728986.1\|518479_520180_+\|oleate-hydratase	gnl\|CDD\|227060	COG4716, COG4716, Myosin-crossreactive antigen [Function unknown].	0
NZ_CP011398.2\|WP_009930283.1\|516049_516355_+\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|273478	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain. This model describes the LPXTG motif-containing region found at the C-terminus of many surface proteins of Streptococcus and Streptomyces species. Cleavage between the Thr and Gly by sortase or a related enzyme leads to covalent anchoring at the new C-terminal Thr to the cell wall. Hits that do not lie at the C-terminus or are not found in Gram-positive bacteria are probably false-positive. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region. [Cell envelope, Other].	1.67487e-05
NZ_CP011398.2\|WP_003731249.1\|522799_524563_+\|RNA-directed-DNA-polymerase	gnl\|CDD\|238824	cd01646, RT_Bac_retron_I, RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.	1.43128e-28
NZ_CP011398.2\|WP_023550311.1\|507074_508613_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|368260	pfam05043, Mga, Mga helix-turn-helix domain. M regulator protein trans-acting positive regulator (Mga) is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions. This domain is found in the centre of the Mga proteins. This family also contains a number of bacterial RofA transcriptional regulators that seem to be largely restricted to streptococci. These proteins have been shown to regulate the expression of important bacterial adhesins. This is presumably a DNA-binding domain.	1.01429e-19
NZ_CP011398.2\|WP_003728092.1\|504890_506441_+\|hydantoinase/oxoprolinase-family-protein	gnl\|CDD\|223223	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	1.15698e-106
NZ_CP011398.2\|WP_003721242.1\|499680_500628_-\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	7.47241e-102
NZ_CP011398.2\|WP_003725186.1\|496371_498531_-\|transglutaminase	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	4.40206e-28
NZ_CP011398.2\|WP_003721271.1\|522160_522526_+\|heme-oxygenase-IsdG	gnl\|CDD\|183970	PRK13316, PRK13316, heme oxygenase IsdG.	3.55164e-70
NZ_CP011398.2\|WP_026747115.1\|511015_513085_+\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	8.72154e-31

>NZ_CP011398.2|WP_026747115.1|511015_513085_+|BspA-family-leucine-rich-repeat-surface-protein
MKKLSIRVILIVTIIFIACGSANVSIAQERDIINKLPEVELGSLYTSNLITEEVAQDKPAEVENLEQAPTTDDLVQNPDVLEQPIADSDDSDLTVVNSGDFWTIYRNTVNGEYSLHMFGNVPSSKPTAWNSYLNRIKHIEIEEATLTGNFSSYFRNNVFTVLESVRIERSNLSRVTSFALAFYGSGIEKVIIRDNNYPTAPSLLTTEGMFKNCSNLMEVDLSGLDTSAVTTMWDMFNSCRALEELDVSNFDTSSVTNMSYMFYDNRNLEVLDVSNLDTGSVTNMYAMFEDCTSLEELDVSNFDTSSVTDMYRVFNGCEKLKKLDVSNFDTSSATAMVQMFRNCSALEKLDVSNFNTSLVTDMRAMFAGCTSLEALDVSNFDTSSVTNMAAMFSDNEKLEKLDLSTFDTSSVTNMGTMFKNCTALKSLFLDNFTHAASSTDMFTGTTSLSYLFVSHNVSNFNGLENTNWYDEKNWVQFSNLSQLQTYHRKQSEPTGYRKGEFLSLTMDAMGGQFEDAEEQKVQSKISGEYWEEVIPVKEGHYFDGWYLDQNFTNKFDFSLPATVSATLYAKWVENYTVVIPASISLNEATELKVEGINRGSKTLSVGLNYEETTISESNKLTLSNTADTTVQCLAPLSWDGSETNPKNAILTLAPGSEITEGDAVMEIESPENIQAGTYTGNLVFSINYE
>NZ_CP011398.2|WP_046811179.1|508876_510880_+|BspA-family-leucine-rich-repeat-surface-protein
MKKFSMRVVLIISVLFIALGNANVSIAQERDTTNKLPEVEIGSLDTSDVIAEEVAQDKPAEVENLEEIPTTDDLMQNPNVLEKSVADSDDSDLTVVSSGAYWTLYYNSANGEYSLRMFGNVPSSKPSAWNSYLNSIKHIEIEEATLTGSFASYFRDTGFPVLESVRIEQCNLSGVTSFARAFEGDSESESPLEKVIIRDNYYQETPSLTNISRMFTLCRKLSELDVSGLNTSSVTKMDTIFSNANSLKELDVSHFDTSSVTDMSSMFAACNSLEELDVSNFDTSSVTNMKYMLSGLHLKKLDVSNFDTSSVNNMLHMFYVCNNLEELDLSNFDTSSVTNMFAMFAYCTSLKEIDVSNFDTSSVTTMSAMFFECSSLEALDLSNFDTSSVTTMASMFENSTALKSLYLDNFTDAASMTDMFKGTTSLTYLFVSHNLSTFNRLENTSWYDEKNWVQFSNLSQLQTYHRKQSEPTGYRKGAFLSLTMDAMGGEFEDAEEQKVQNKVSGEYWEEIVPVKEDYYFDGWYLDQNFTNKFDFSLPAAVSTTIYAKWVENYTVIIPASISLNEATELKVEGINRGSKALSVGLNRLATSVSESNELTLANTADTTVQCSAPLSWDGSENNPEKAILTLAPGSEITEGDAVMAIEAPENIQAGKYTGNLVFSINYE
>NZ_CP011398.2|WP_023550311.1|507074_508613_+|helix-turn-helix-domain-containing-protein
MREYLDSKSQKKVALLEKIFYAENHTSTQEELLNDLNITYPTLISTIKTINFDIERFGYKAFSIVHSAPNLSYTLKISDNCSIQLIINAYIRESPKFQILETLLLASFPNLQALAKKVHVSYSGIKKEIKELNEELRERNLSISTGNQVEITGDEFSLRIFYAFLFLVAYSGDRWPFSFVQYDEITDILESCPKEIYRANSIDKAMMIHYYVAMHLLRDRMNCQIDTTRQFKVALYKACTEESKKSESAFIKKVAKQLPNRNYKEMTYTTQIILSTIVAFGSYSSIEKMPSFFYMDEQLEEMGFMKLVDFASEQVNDNLSIPFSEKEMELLRYSFASINYRYFLLDNLINKFNNIVPGYTNLDRNIRKIHKVNHLEPLISQLVNLKEMDPLKPFEERLASDYLIILDKRIDFSIHTLPIKVTILSTISNETAVFDFMRYFSSYYNLEIINQVDPVVDLYISDFSVSPEVLTSLRINQPIIYVNTRWLESDYVKINDNLAKIARKKFIANKKN
>NZ_CP011398.2|WP_003728092.1|504890_506441_+|hydantoinase/oxoprolinase-family-protein
MYKIGIDVGGTNTDAVILDENQQLIHSVKMPTSEDIETGITESLHRVLSETGIDRSKVTHAMLGTTQCTNAIVERKKLAKVGVLRLGYPATASVLPYTAWPEDMVGFLSGKYKLTGGGYEYDGQVLSEINEAEIRETLASWKGEVESVAVVGVFSSLKNDQELAVQKIIEEELGADIPVSISSSVGSVGLIERENATILNAALFKVIAATSDGFEKALEQEGIAHAEIYLCQNDGTLMSLNYARQFPILTIACGPTNSIRGASYLAGLKDAMVLDVGGTTSDIGVLTDGFPRESSLAVDVGGVRTNFRMPDIISIGLGGGSIVREKDGDITIGPDSVGYRISEEALVFGGKTMTTTDIAVRLGRAEIGNPELVAHIPTDFAEKAYKKIAEMTEDAIDKMKTSSGSVSLVLVGGGSVIIPDEISGVAQIFRDKNGPVANAIGASISQISGQYEQIYIYSQIEREEALQDAEQKAREQATLAGAVTDSIEVVEVEEIPLAYHPGNATRLRVKVVGNLV
>NZ_CP011398.2|WP_003728093.1|503797_504898_+|DUF917-domain-containing-protein
MRYLDEQAIENIAIGAAFLGTGGGGDPYIGKMMALTAIKKHGPIKLLSPEEIADDDYFIPAAMMGAPSVLIEKFPKGDEFVRVFEKLGRYVGKEVKGTFPMEAGGVNSMIPIVVAAQLGLPMVDCDGMGRAFPELQMVTFHLDGISATPMAITDEKGNIGIMETIDNKWTERLARVTTVEMGASSLVSLYPCNGAQIKQSSIKNIVTLSEEIGKVIRETSMDEAEKLQKLLDVTHGYHLFEGKITDVVRETRAGFNFGRVKIDGLNKDTGSEVIVHFQNENLVAEKNGEPIAITPDLICMVDLETLMPVTTEALKYGKRVRVMALPADDAWRTDKGIETVGPRYFGYDVDFEPLEELVKKEERRHV
>NZ_CP011398.2|WP_003725189.1|502513_503797_+|cytosine-permease
MTEKKSVEQTQSWQSLAFVWTGAMICVPSLLVGGTLISGMPLWEAILIALLGYGVIVLFMIYQGMQSSDLGIPAVSVASQVFGEQGSKKIISILLAIACLGWFGIQANVCGAAFSQFLGIYGINLPVPVSSLIWGVIMLLSAIYGIRILSILNYIAVPVLLFVCIYGLVVSLNDGGLAIVENYKPAGSMSFMTGLAITIGSFALGAVIAGDYSQYTKSRKDVVKAAIVGILPSGVLMITVGAVLALTAGTADISVVFTNLGLPVLGIIGLILAAWTTNAVNAFSGGIAIINVFNISEKYHKVAVAVAGGLGTILAVIGILNHFVPIMSVLSAMVPPVAGVMIASYWIVQKGDKSKWAPVPGVNWLGVSSWLVGAVIAGIPVILTFFPELPQLPNQPLIGIILSLAVYLIGAKVLSGKTNNVENLEGK
>NZ_CP011398.2|WP_003740428.1|500783_502379_+|PucR-family-transcriptional-regulator
MSVKLADLMKLPSLKEAKVVSGKSGLSKLVSSISVLEYTEVALLEDDLFDNDEFYGSEIVVSAFVNIRDDVEAQCRTIERLHKVGEVALILYYVGIFVPKMDQKLIDFANELDFTIIVMPENEMSLRYSEVIYEVVEAIVKQEMTDTNFVTESLEQISSVRPPQRNIDTTLKILSDRTHTSLVLTDNSFQVINSITWPRTRHWDFERIIEASKQIGEHELVQLTLDERDFYTARKPIFQDGMQAMHLFMMKEKGVLTADVVMQITEVVQVFMNLWGRNYVEISTAELMKAILNDESVKMRRLGKILNVDVSSIKWMWLVKTEEIRDNEQVLAELKSFVASHFQVSLIDLFEDNIVVLLDNSVAQRDRTHTANEFAMMMKEHGIDLKITVCQGMEQTSDVQSAYSLVNEYKNAANAIYANKSIYSLQEIDFAAKCVEIVDRGELAIAEQMRPLKPLEDNDELIETLSVFLLEGESNYNQAAELLFLHKNTIKYRIQRINELLQYPATKIPESYNLYLAVAIRRILGGNNNNK
>NZ_CP011398.2|WP_003721242.1|499680_500628_-|MoxR-family-ATPase
MSIEPSIKIEEIINEVEKVIVGKRHVVKLSLTALLAGGHVLLEDVPGVGKTMMVRTLSKTIGVSFKRIQFTPDLLPADVTGVSIFNPETRDFEFRPGPVMGNIVLADEINRTAPRTQAALLEGMAENSVTVDGITRKLANPFFVMATQNPIEYEGTYALPEAQLDRFLLKINIGYPTVEEEMQLLTLKQYQDPLDQTQQVVTLSELLDLKNKAKQVFIDDVLKNYIIRLVDATRKHPSVALGISPRGSLAFMQAAQAFALIEGRDYVIPDDIQYLAPYIFTHRLILKSEAYYNEETAESIIASILKNTSVPVEKR
>NZ_CP011398.2|WP_009929138.1|498527_499676_-|DUF58-domain-containing-protein
MLKKRLLLAFRWIIMLIIYAGLWTYTLFQGDTASWFLTYFFSFILLLLFLSSIYPLKAWKVNRRFVKNTYHDGDLIDMQVSFTRKSRYPVGYLLFQQKIPASFGNVSARQQVVYPLFKKHFTVTLAGFVGVRGIHSFPPVDVETSDAFGLLERSRQLSSEKSLTIYPTYFPDVLEKISEASPENERNAAYWTLKKNSNLHSLREFSSGDRISLIDWKSSAKSDQLMTREFENSATSRLSVIFYGASHPNFELSLRAAYSFIRKISEDNGEIRVTLLGDQTSKFAPAKGTSRLQDISTAFAEIAPVDSLTLQESLDSNLHSGEKILLFTPCIDTMLMQKVTRLTDNKQLQIITFQSEHSKAMDAPAIFLEPASLLSRWEREAK
>NZ_CP011398.2|WP_003725186.1|496371_498531_-|transglutaminase
MKRYLTLVMLFILSVLLISEWIYPFAELTELSTANWIILFITLSLGSFFLRLKYYWTIPLHIVMIIFVSGIYYAKGGILAGNWFVSFFQITFNGFRDMVQFRSSDISMDFILIVFLIALWLLSYITTYSILRKQRVMSVLVLTVAYLAVINTFTDYNSNWAIVRTVLEGFLLLHLALASRIAAPNRISADSLKRNGLFYHIFVILLLAVFVFSSLMLPKKAPIFPDPVPTIKNALGINTTRTVGYSEDDTTLGGALKKDNATVFTARAEKGHYWRVESKTVYTGTGWANANSADVISFSSGDNFPIQLTEQTTGATNTAEISFASSNDYMPYPYGTQTVNGAVDSFSANLTIERVGPVDTIKNYTVQLKTPVYNIEKMQNADFSTLSNAFVSQYTQTPKDLPDRVTKLANKVTKDADSIYDKTKAIERYLSASGTFTYSTEDAKETPRGADYVDQFLFETQIGYCDNFSTSMVVMLRSLGIPARWAKGYTPGEGEKKENDAKTTYTITNNNAHSWPEVFFPGTGWVPFEPTATFSNPENFQEPTTETANKPETPNDSTSTPETPNTADKTPEQDNGSSSTGETPKKEEPKTETAASNFEIPSWVWWIPAGLVVTLLALAIIFRRRIRRYLLLRSLRNSPEFGKTYHRLMKLLASYGYVRESSETLRHFSTRVDAELTTTEFSRLTKMYEAQIYSNNLTEKVITAEETQLVQQVIARLTK
>NZ_CP011398.2|WP_023550585.1|515043_515517_+|hypothetical-protein
MKKKRVVIISLLLLLVSVIGISSYFLFKDKINLLDVDPSAVEWNGKKQKDTSGEENTIAIPGFEKVTLYANETTQAVNFHNPEINDCYFKISLIHPDGSVLWISDLIEPGKGMYSIELEKPLAVGEYENAVLKYECFSLNDQSPLNGSEINLKLVVV
>NZ_CP011398.2|WP_023550583.1|515536_516022_+|hypothetical-protein
MNKLVLSTLSVAAMGMVIFSGGTAYAADKEGNTVVEYSVEGDYTLVVPEKVNLSNDNATEMSVKTINRNLEPGKEVEVTLSSGLSADGEIELQRVGATSDVITSSFKSNNSVVPMANPIIGSFSGYAMEETEVSKIQIGNPQGDKKAGAYQTTLTFTAAFK
>NZ_CP011398.2|WP_009930283.1|516049_516355_+|LPXTG-cell-wall-anchor-domain-containing-protein
MKRKLVLAMVLISFCGMFLLSPERVQASQTVVEVFISEDDLDVSEENIQEIPKKELAASSDKDNKQHTLPKAGDTVTNYTLLGLVLILIWLIMQRKRKKKE
>NZ_CP011398.2|WP_003725775.1|516430_516697_+|hypothetical-protein
MARIEYEEKIQKSLLVLYFRGSTIQSICREYGIPRYEFHKWMKLHDADKLETKEVKTFLQIRELKQQKNKLEEEILFLNEAINLLESP
>NZ_CP011398.2|WP_003733207.1|517809_518370_+|TetR-family-transcriptional-regulator
MAESLITKKAIAGGLMELCQHKRFEKISIADITNICGLNRQTFYYHFTDKYDLLTWTYENDFFHCLADGITLGNWDKHVLKMLESIKENADFYKNTVSADASILSFCFSKLTNSLFMDLFEKIDTNGAVNEADRVFYAEFFSYGCSGVLIKWITRGFKEAPETIANQLFRLAKDTEFLANSMYREN
>NZ_CP011398.2|WP_003728986.1|518479_520180_+|oleate-hydratase
MKNKKRTLVALTGAAIGTGIAAKKISEQKAAEKERAVDEAIKARYYGDKQVYFVGGGIASLAGAVYLIRDANFDGKNIHIIEGMHILGGSNDGAGSVEHGFVCRGGRMLNEETYENFWDLFSSIPSLDMPNFSVTEEILNFDHLHPTHAQARLVDKDRNILDAHSMGFNNNDRMLMTKLLATPEEKLDNLTIRDWFDEHFFETNFWYMWQTTFAFQKWSSLFEFRRYMNRMMLEFSRIDTLEGVTRTPLNQYESLILPLKTFLDKHHVDFTINQTVEDIDFKDAPGITATALHLSDGSTIELGPDDDVIMTNACMTDSATLGDMNTPAPKPEEKPISGELWYKVAQKKPNLGNPEPFFGHEEETNWQSFTVTCHGDKLLKRIERFTGNIPGSGALMTFKDSNWLMSTVVAAQPHFKAQDANTTIFWGYGLYPDRVGDFVKKPMKECTGEEILYELMCHLNWQDDFEEIKADIINVIPCYMPYIDAQFEPRAMSDRPAVVPEGSTNFAMISQFVEIPKDMVFTEEYSVRAARIAVYTLLDIDKKICPVTPHNRDPKVLAKATQTMFR
>NZ_CP011398.2|WP_003725208.1|520330_521434_+|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN
MEKSSIYGLTWTKLTEWLEAHGQKKFRATQVWDWLYRKRVKTFEEMSNVPKETIELLTANFVMNTLEEQVVQESTDGTTKYLFKLSDGNLIETVMMKQEYGLSVCVTTQVGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYLDGRNLEERVSHVVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNRRITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDIDAACGQLRSKQIKRVGVRERMKQKQAAAEE
>NZ_CP011398.2|WP_003725209.1|521523_522003_+|AraC-family-transcriptional-regulator
MEVEIVERNAFTAVGKKRTFSVENDAQKEKISQFWQEANTNGDAERINELAEFATIDGILGVCKMNGDKMDYYIAIESELTPPADMEKLIIPASKWAIFKSVGPLPSAIQKVWEYIYGEWFQTSNYAHGNAPELEVYTEGDTTAADYYSEVWIPVVEKE
>NZ_CP011398.2|WP_003721271.1|522160_522526_+|heme-oxygenase-IsdG
MIIVTNTIKVEKGAAEHVIRQFTGANGDGHPTKDIAEVEGFLGFELWHSKPEDKDYEEVVVTSKWESEEAQRNWVKSDSFKKAHGRTKDTREQREDRKGIVGNAIARFEVVHVQNPVIVEK
>NZ_CP011398.2|WP_003731249.1|522799_524563_+|RNA-directed-DNA-polymerase
MRKKVDVLSMDNEKAREFFMKPSSYFSQNLPKYFNLGYLLESAESKLGKKQLKKEMYFENKVYSNFPNVNFLIQTNKTISTYRPITLLHPYIYVDYVNFLTEIKIWEELKERFQNLQEEVKEKIICSSLPFDIETSKEDDSKKEMALNFWKSIEQETIKYSLGYNYLLKLDISNFYGSIYTHTLCWAFHGENYSKEAKNSKNLQNLTGDKCDRKFQWMNYGETVGIPQGNVISDLMSELLLAYIDSELVKKIDDEIDYKIIRYRDDYRIFTKRLEDSTLVKRELVVLLQRFKLNLGESKTSQTTDIISGSLKEDKMYWIEHDPVTKLTSDKFYRSPKILMKKSLEEHKNKKYKTRVFNEFFKKHFHNRTYQATLQKHLLIIKVFSDLYPNSGQLIAALHEFEGRLLDLNYKDFRNIGTEVEVLIAILVDIIKKNPKITEIGVKLLSTLLKKINFEEFEMKYLESNNSNEVQSDFEVKLAYINSVNHKLSNSNYNDYLEIWMQRLVVKNLKESTTLSDLYIEQSKNELVKFCNSIIRGKEMIQIFNEDWLKDEHKIELSKFINLNEIDKLTDIISDDEIYLAEYNQMT

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

125863 : 132390

Listeria_phage(33.33%)

tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003728215.1\|125863_126316_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	4.0e-31	47.9
WP_003721740.1\|126321_126657_-	helix-turn-helix transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	4.0e-20	52.5
WP_009927883.1\|126873_127302_+	hypothetical protein	NA	NA	NA	NA
WP_003731177.1\|127313_127730_+	hypothetical protein	A8ASQ1	Listeria_phage	6.5e-20	37.9
WP_003728212.1\|128009_128399_+	DUF5072 domain-containing protein	NA	NA	NA	NA
WP_003721744.1\|128411_128924_+\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	62.7
WP_003721745.1\|128971_129274_+	hypothetical protein	NA	NA	NA	NA
WP_003740367.1\|129315_129720_+	hypothetical protein	NA	NA	NA	NA
WP_046811173.1\|129706_131575_+	membrane protein	A0A097PAU2	Streptococcus_pyogenes_phage	4.5e-20	45.8
WP_003734720.1\|131571_132390_+\|tail	phage tail family protein	A0A060AFE1	Staphylococcus_phage	7.2e-39	35.0

DBSCAN-SWA_2

1128647 : 1136070

Hokovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003730941.1\|1128647_1129031_+	glycerol-3-phosphate cytidylyltransferase	A0A1V0SGE7	Hokovirus	1.4e-16	40.7
WP_003727002.1\|1129052_1130036_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	2.0e-11	33.8
WP_026747136.1\|1130050_1131064_+	glycosyltransferase	A0A1V0SAH6	Catovirus	1.8e-10	31.2
WP_003721509.1\|1131272_1132763_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	9.5e-114	49.7
WP_023550416.1\|1132774_1133599_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	1.3e-67	52.2
WP_009929872.1\|1133611_1133920_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_009929871.1\|1133980_1134385_+	PTS lactose transporter subunit IIBC	NA	NA	NA	NA
WP_023550418.1\|1134513_1136070_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	6.0e-18	29.2

DBSCAN-SWA_3

1231891 : 1297979

Listeria_phage(82.98%)

integrase,terminase,capsid,holin,protease,tRNA,tail,portal

attL 1257640:1257663|attR 1299793:1299816

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003721619.1\|1231891_1232944_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	1.3e-29	34.9
WP_009927922.1\|1232943_1235352_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_003721621.1\|1235512_1236214_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.0e-33	35.8
WP_023550449.1\|1236227_1239638_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_003724750.1\|1239735_1240188_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003724751.1\|1240203_1243404_+	MMPL family transporter	NA	NA	NA	NA
WP_003724752.1\|1243507_1244182_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	3.4e-50	47.7
WP_012681263.1\|1244219_1245146_-	ribonuclease HIII	NA	NA	NA	NA
WP_003740576.1\|1245299_1245563_+	cell division protein ZapA	NA	NA	NA	NA
WP_003726937.1\|1245562_1246105_+	CvpA family protein	NA	NA	NA	NA
WP_003726936.1\|1246196_1247909_+	DNA polymerase/3'-5' exonuclease PolX	A0A2H4UV14	Bodo_saltans_virus	1.9e-17	24.5
WP_003734676.1\|1247931_1250289_+	endonuclease MutS2	Q94M10	Lactobacillus_phage	1.0e-21	50.4
WP_003723853.1\|1250369_1250681_+	thioredoxin	A0A1X9I9P5	Staphylococcus_phage	5.4e-19	39.6
WP_003726544.1\|1250756_1252568_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_003726934.1\|1252748_1253963_+	aspartate kinase	NA	NA	NA	NA
WP_074046878.1\|1254018_1254513_-	YslB family protein	NA	NA	NA	NA
WP_003723856.1\|1254660_1255461_+	glutamate racemase	NA	NA	NA	NA
WP_003730987.1\|1255473_1256220_+	ribonuclease PH	NA	NA	NA	NA
WP_009928777.1\|1256222_1256834_+	XTP/dITP diphosphatase	Q66YC8	Euphorbia_ringspot_virus	8.7e-05	28.0
WP_003726034.1\|1256870_1257395_+	metallophosphoesterase	NA	NA	NA	NA
1257640:1257663	attL	NA	NA	NA	NA
WP_046811186.1\|1257680_1258835_-\|integrase	site-specific integrase	A0A059T688	Listeria_phage	2.8e-214	97.7
WP_012951517.1\|1258980_1259637_-	DUF4352 domain-containing protein	NA	NA	NA	NA
WP_025370563.1\|1259688_1260141_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	1.7e-82	96.7
WP_046811187.1\|1260157_1260481_-	helix-turn-helix transcriptional regulator	Q8W5Y0	Listeria_phage	1.2e-37	72.0
WP_159420750.1\|1260762_1260918_+	hypothetical protein	NA	NA	NA	NA
WP_025370565.1\|1260941_1261259_-	hypothetical protein	NA	NA	NA	NA
WP_009929536.1\|1261324_1261528_+	helix-turn-helix transcriptional regulator	A0A059T5F8	Listeria_phage	3.1e-28	100.0
WP_015987310.1\|1261529_1261772_+	hypothetical protein	A8ATD2	Listeria_phage	1.4e-43	100.0
WP_023548967.1\|1261774_1261960_+	hypothetical protein	A0A059T7Z3	Listeria_phage	4.4e-29	98.4
WP_046811188.1\|1262483_1263242_+	SAM-dependent DNA methyltransferase	A8ATD5	Listeria_phage	3.3e-131	98.3
WP_046811189.1\|1263412_1264126_+	pentapeptide repeat-containing protein	A8ATE4	Listeria_phage	1.9e-35	89.0
WP_012951530.1\|1264678_1265158_+	hypothetical protein	NA	NA	NA	NA
WP_012951531.1\|1265158_1265788_+	hypothetical protein	A0A191KBJ8	Streptococcus_virus	1.1e-66	58.4
WP_003731672.1\|1265806_1266040_+	hypothetical protein	NA	NA	NA	NA
WP_003731671.1\|1266036_1266267_+	hypothetical protein	NA	NA	NA	NA
WP_003731670.1\|1266256_1266523_+	hypothetical protein	NA	NA	NA	NA
WP_012951535.1\|1267026_1267410_+	hypothetical protein	A8ATE8	Listeria_phage	5.3e-61	92.9
WP_003731665.1\|1267411_1267891_+	siphovirus Gp157 family protein	R4IBM0	Listeria_phage	7.6e-57	76.7
WP_023553843.1\|1267910_1268600_+	AAA family ATPase	R4IDY8	Listeria_phage	4.8e-129	98.3
WP_109217206.1\|1268663_1269920_+	DEAD/DEAH box helicase	R4IBK4	Listeria_phage	9.5e-224	97.0
WP_015987323.1\|1269942_1270425_+	DUF669 domain-containing protein	A8ATF2	Listeria_phage	4.9e-88	100.0
WP_046811191.1\|1270447_1272721_+	DNA primase	A8ATF3	Listeria_phage	0.0e+00	94.7
WP_046811192.1\|1273013_1273334_+	VRR-NUC domain-containing protein	W0G8N0	Listeria_phage	5.8e-53	95.3
WP_039389924.1\|1273330_1273600_+	hypothetical protein	W0GBM0	Listeria_phage	5.3e-15	73.6
WP_046811274.1\|1273710_1274244_+	DUF3310 domain-containing protein	A0A059T7T5	Listeria_phage	1.1e-80	82.5
WP_003731657.1\|1274240_1274510_+	hypothetical protein	NA	NA	NA	NA
WP_003731655.1\|1274754_1274982_+	hypothetical protein	NA	NA	NA	NA
WP_009917712.1\|1274994_1275420_+	DUF722 domain-containing protein	A0A059T6H4	Listeria_phage	8.0e-74	100.0
WP_009917711.1\|1275517_1276261_+	DUF559 domain-containing protein	NA	NA	NA	NA
WP_009928009.1\|1276621_1276936_+	HNH endonuclease	A8ATF8	Listeria_phage	3.8e-57	99.0
WP_014929542.1\|1276984_1277341_+	hypothetical protein	A0A059T7Y1	Listeria_phage	4.5e-46	97.0
WP_109217207.1\|1277337_1278981_+\|terminase	terminase large subunit	A0A059T7Q8	Listeria_phage	0.0e+00	98.2
WP_023548926.1\|1278992_1280123_+\|portal	phage portal protein	A8AT96	Listeria_phage	1.7e-203	93.1
WP_046811193.1\|1280119_1280917_+\|protease	Clp protease ClpP	A0A059T5F2	Listeria_phage	1.1e-143	99.6
WP_014930913.1\|1280943_1282095_+\|capsid	phage major capsid protein	A0A059T678	Listeria_phage	6.3e-214	100.0
WP_014930914.1\|1282281_1282581_+	hypothetical protein	A0A059T7R0	Listeria_phage	5.3e-48	100.0
WP_014929549.1\|1282564_1282930_+	hypothetical protein	A0A059T6F2	Listeria_phage	2.9e-64	100.0
WP_012951550.1\|1282926_1283328_+	hypothetical protein	A0A059T5F3	Listeria_phage	2.1e-68	100.0
WP_046811194.1\|1283324_1283708_+	hypothetical protein	A0A059T681	Listeria_phage	1.1e-66	98.4
WP_014929552.1\|1283728_1284316_+\|tail	phage tail protein	A0A059T7Y4	Listeria_phage	2.9e-106	98.5
WP_046811195.1\|1284386_1284719_+	hypothetical protein	A0A059T7R2	Listeria_phage	1.5e-51	96.4
WP_109217208.1\|1284934_1289851_+\|tail	phage tail tape measure protein	A0A059T5F4	Listeria_phage	0.0e+00	96.9
WP_026749927.1\|1291510_1293805_+	hypothetical protein	A0A059T7Y6	Listeria_phage	0.0e+00	99.2
WP_046811196.1\|1293794_1294886_+	hypothetical protein	A0A059T7R4	Listeria_phage	1.7e-189	91.8
WP_003733957.1\|1294936_1295242_+	hypothetical protein	A0A059T5E6	Listeria_phage	1.8e-43	100.0
WP_003723294.1\|1295241_1295523_+\|holin	phage holin	A8ATW3	Listeria_phage	3.0e-45	100.0
WP_025370596.1\|1295522_1296230_+	M15 family metallopeptidase	A8ATW4	Listeria_phage	1.0e-129	97.9
WP_025370597.1\|1296377_1297079_+	DUF3800 domain-containing protein	R4IBV1	Listeria_phage	6.4e-129	97.8
WP_014930932.1\|1297557_1297791_+	hypothetical protein	A8ATX0	Listeria_phage	2.3e-35	94.8
WP_031672409.1\|1297787_1297979_+	hypothetical protein	A8ATC6	Listeria_phage	1.7e-28	98.4
1299793:1299816	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1320816 : 1378401

Listeria_phage(90.41%)

plate,terminase,protease,head,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023550483.1\|1320816_1322064_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	7.2e-107	51.8
WP_003726720.1\|1322047_1322878_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	3.6e-46	42.4
WP_003734523.1\|1323024_1324164_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_003723563.1\|1324243_1324639_-	helix-turn-helix transcriptional regulator	A9D9J6	Lactobacillus_prophage	1.3e-14	57.4
WP_046811198.1\|1324955_1326371_-	recombinase family protein	A0A1L2JY12	Aeribacillus_phage	3.0e-117	47.1
WP_046811199.1\|1326460_1326853_-	hypothetical protein	A8ATJ7	Listeria_phage	2.6e-55	94.6
WP_046811200.1\|1326899_1327319_-	ImmA/IrrE family metallo-endopeptidase	A8ATJ8	Listeria_phage	3.4e-77	98.6
WP_046811201.1\|1327335_1327764_-	helix-turn-helix transcriptional regulator	A8ATJ9	Listeria_phage	2.0e-72	99.3
WP_046811202.1\|1327922_1328108_+	helix-turn-helix transcriptional regulator	A8ATK0	Listeria_phage	5.8e-29	100.0
WP_046811203.1\|1328184_1328709_+	hypothetical protein	A8ATK1	Listeria_phage	6.6e-86	90.8
WP_046811204.1\|1329187_1329472_+	hypothetical protein	A8ATK4	Listeria_phage	9.2e-26	54.2
WP_046811205.1\|1329649_1329877_+	hypothetical protein	A8ATK5	Listeria_phage	5.2e-32	98.7
WP_046811206.1\|1329894_1330236_+	hypothetical protein	A8ATK6	Listeria_phage	6.7e-23	51.3
WP_046811207.1\|1330222_1332166_+	AAA family ATPase	A8ATK7	Listeria_phage	0.0e+00	98.3
WP_046811208.1\|1332169_1332901_+	phage recombination protein Bet	A8ATK8	Listeria_phage	6.0e-77	61.4
WP_046811209.1\|1332900_1333596_+	MBL fold metallo-hydrolase	A8ATK9	Listeria_phage	4.3e-125	97.4
WP_003731482.1\|1333607_1334525_+	DUF4373 domain-containing protein	A8ATL0	Listeria_phage	2.2e-169	100.0
WP_031648583.1\|1334448_1335264_+	ATP-binding protein	A8ATL1	Listeria_phage	4.1e-143	99.3
WP_041918379.1\|1335260_1335461_+	hypothetical protein	A8ATL2	Listeria_phage	4.0e-28	89.4
WP_046811277.1\|1335447_1335669_+	hypothetical protein	A8ATL3	Listeria_phage	1.2e-28	85.3
WP_046811210.1\|1335625_1335865_+	hypothetical protein	A8ATL4	Listeria_phage	3.6e-31	98.6
WP_046811211.1\|1335845_1336283_+	RusA family crossover junction endodeoxyribonuclease	A8ATL5	Listeria_phage	8.5e-71	91.0
WP_046811212.1\|1336302_1336923_+	hypothetical protein	A8ATL6	Listeria_phage	6.1e-107	98.1
WP_046811213.1\|1336963_1337344_+	hypothetical protein	A8ATL7	Listeria_phage	1.6e-65	95.2
WP_046811214.1\|1337496_1337919_+	hypothetical protein	A8ATL9	Listeria_phage	6.1e-50	88.6
WP_046811215.1\|1337915_1339277_+	hypothetical protein	A8ATM0	Listeria_phage	2.4e-249	94.7
WP_046811216.1\|1339293_1339671_+	hypothetical protein	NA	NA	NA	NA
WP_046811217.1\|1339667_1339922_+	hypothetical protein	A0A059T6G3	Listeria_phage	7.4e-27	74.4
WP_003731496.1\|1340062_1340446_+	preprotein translocase subunit YajC	A8ATZ3	Listeria_phage	2.4e-53	88.2
WP_003731497.1\|1340464_1340653_+	hypothetical protein	NA	NA	NA	NA
WP_046811218.1\|1340652_1340985_+	hypothetical protein	A8ATZ5	Listeria_phage	4.5e-08	93.1
WP_046811219.1\|1340981_1341182_+	hypothetical protein	NA	NA	NA	NA
WP_046811220.1\|1341174_1341429_+	DUF3850 domain-containing protein	A8ATM7	Listeria_phage	5.9e-32	82.5
WP_046811221.1\|1341440_1342001_+	phage protein	A8ATM8	Listeria_phage	4.5e-101	95.7
WP_003731502.1\|1342081_1342504_+	hypothetical protein	A8ATM9	Listeria_phage	6.3e-71	100.0
WP_046811222.1\|1342516_1343284_+	Rha family transcriptional regulator	A8ATN0	Listeria_phage	9.8e-139	98.4
WP_046811224.1\|1343597_1344074_+	hypothetical protein	A0A1P8BMT7	Lactococcus_phage	5.5e-07	30.2
WP_046811225.1\|1344146_1345484_+	ParB N-terminal domain-containing protein	A8ATN5	Listeria_phage	7.2e-246	94.8
WP_003731507.1\|1345531_1345729_+	hypothetical protein	A8ATN6	Listeria_phage	5.2e-28	100.0
WP_003731508.1\|1345858_1346089_+	hypothetical protein	A8ATN7	Listeria_phage	3.7e-33	98.7
WP_003731509.1\|1346126_1346414_+	hypothetical protein	A0A0S2MYE7	Enterococcus_phage	9.9e-20	55.4
WP_046811226.1\|1346455_1347340_+	hypothetical protein	A8ATF9	Listeria_phage	2.2e-126	92.9
WP_046811227.1\|1347317_1348778_+\|terminase	phage terminase large subunit	A8ATG0	Listeria_phage	1.0e-277	95.1
WP_046811228.1\|1348791_1350177_+	DUF1073 domain-containing protein	A8ATG1	Listeria_phage	9.7e-262	98.0
WP_046811229.1\|1350169_1351579_+\|head	phage head morphogenesis protein	A8ATG2	Listeria_phage	5.6e-265	98.9
WP_039378288.1\|1351794_1352904_+	DUF2213 domain-containing protein	A8ATG4	Listeria_phage	9.4e-175	99.5
WP_046811230.1\|1352903_1353353_+	hypothetical protein	A8ATG5	Listeria_phage	1.0e-74	98.0
WP_046811231.1\|1353373_1354279_+	DUF2184 domain-containing protein	A8ATG6	Listeria_phage	9.7e-162	97.0
WP_039378284.1\|1354301_1354688_+	hypothetical protein	A8ATG7	Listeria_phage	2.1e-65	98.4
WP_031648610.1\|1354699_1355035_+	DUF4054 domain-containing protein	A8ATG8	Listeria_phage	3.6e-53	99.1
WP_031648611.1\|1355034_1355634_+	hypothetical protein	A8ATG9	Listeria_phage	3.7e-109	98.5
WP_046811232.1\|1355633_1356008_+	hypothetical protein	A8ATH0	Listeria_phage	8.0e-62	95.2
WP_031648613.1\|1355997_1356480_+	hypothetical protein	A8ATH1	Listeria_phage	1.1e-82	96.9
WP_046811233.1\|1356484_1357480_+	DUF3383 family protein	A8ATH2	Listeria_phage	3.5e-181	99.4
WP_049961613.1\|1357496_1357895_+	hypothetical protein	A8ATH3	Listeria_phage	4.0e-67	99.2
WP_049961612.1\|1357947_1358304_+	hypothetical protein	A8ATH4	Listeria_phage	2.3e-58	97.5
WP_046811234.1\|1358480_1363511_+	peptidoglycan DD-metalloendopeptidase family protein	A8ATH6	Listeria_phage	0.0e+00	74.6
WP_046811235.1\|1363516_1364065_+	LysM peptidoglycan-binding domain-containing protein	A8ATH7	Listeria_phage	7.1e-83	84.5
WP_003731529.1\|1364064_1364436_+	hypothetical protein	A8ATH8	Listeria_phage	5.4e-50	77.0
WP_046811279.1\|1364441_1365248_+	hypothetical protein	A8ATH9	Listeria_phage	6.1e-131	86.9
WP_046811236.1\|1365248_1365587_+	hypothetical protein	A8ATI0	Listeria_phage	9.2e-49	86.6
WP_003731532.1\|1365583_1365946_+	DUF2634 domain-containing protein	A8ATI1	Listeria_phage	2.0e-41	70.0
WP_046811237.1\|1365938_1367090_+\|plate	baseplate J/gp47 family protein	A8ATI2	Listeria_phage	2.4e-165	77.0
WP_003731534.1\|1367079_1367721_+	hypothetical protein	A8ATI3	Listeria_phage	4.5e-113	99.1
WP_003731535.1\|1367742_1368471_+	hypothetical protein	A8ATI4	Listeria_phage	2.7e-130	93.4
WP_003731536.1\|1368476_1368818_+	hypothetical protein	A8ATI5	Listeria_phage	1.5e-43	93.5
WP_003731537.1\|1369003_1369450_+	hypothetical protein	A8ATI7	Listeria_phage	9.3e-73	97.3
WP_003731538.1\|1369425_1369872_+	hypothetical protein	A8ATI8	Listeria_phage	1.7e-63	95.9
WP_031648623.1\|1369891_1370107_+	LysM peptidoglycan-binding domain-containing protein	A8ATI9	Listeria_phage	1.8e-26	93.0
WP_031648624.1\|1370117_1370372_+\|holin	phage holin	A8ATJ0	Listeria_phage	9.4e-38	95.2
WP_003731541.1\|1370374_1371208_+	N-acetylmuramoyl-L-alanine amidase	A0A1S7FZ94	Listeria_phage	2.5e-47	43.8
WP_046811238.1\|1371269_1371491_-	helix-turn-helix transcriptional regulator	A8ATJ2	Listeria_phage	9.3e-34	97.3
WP_023559354.1\|1371518_1371722_-	hypothetical protein	A8ATJ3	Listeria_phage	2.6e-30	95.5
WP_003731544.1\|1371735_1372101_-	hypothetical protein	A8ATJ4	Listeria_phage	6.4e-56	94.2
WP_052750971.1\|1372410_1372644_+	hypothetical protein	A8ATC5	Listeria_phage	1.1e-32	87.0
WP_052750972.1\|1372640_1372862_+	hypothetical protein	A8ATX1	Listeria_phage	1.4e-21	89.7
WP_003727523.1\|1373144_1373678_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_003731300.1\|1373693_1374359_+	hypothetical protein	NA	NA	NA	NA
WP_003727521.1\|1374620_1375559_+	hypothetical protein	NA	NA	NA	NA
WP_003723884.1\|1375673_1376957_+	trigger factor	NA	NA	NA	NA
WP_003723886.1\|1377141_1378401_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.4e-145	63.2

DBSCAN-SWA_5

1918975 : 1927261

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003726209.1\|1918975_1919542_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	8.3e-26	36.4
WP_003726210.1\|1919538_1920588_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.2e-63	44.4
WP_003722245.1\|1920606_1922034_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-53	34.6
WP_031644866.1\|1922018_1924238_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.7e-159	41.0
WP_003726212.1\|1924230_1924914_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_003722248.1\|1924917_1925163_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_003726214.1\|1925174_1925888_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	2.0e-40	38.3
WP_003729814.1\|1925968_1927261_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	2.5e-17	33.0

DBSCAN-SWA_6

2454169 : 2496845

Listeria_phage(95.08%)

integrase,terminase,holin,plate,tail,portal

attL 2451270:2451285|attR 2488954:2488969

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2451270:2451285	attL	NA	NA	NA	NA
WP_003725136.1\|2454169_2454403_-	hypothetical protein	A8ATC5	Listeria_phage	1.2e-34	92.2
WP_023548524.1\|2454800_2454968_-	hypothetical protein	NA	NA	NA	NA
WP_031644606.1\|2455232_2456084_-	peptidase M15	A0A059T7Y8	Listeria_phage	1.4e-138	93.3
WP_003722522.1\|2456083_2456365_-\|holin	holin	A8ASL4	Listeria_phage	3.4e-41	94.6
WP_003722523.1\|2456377_2456743_-	hypothetical protein	Q9T1A0	Listeria_phage	7.4e-12	100.0
WP_003722524.1\|2456770_2456929_-	hypothetical protein	Q9T1A1	Listeria_phage	6.0e-19	100.0
WP_003727798.1\|2456933_2457251_-	hypothetical protein	Q9T1A2	Listeria_phage	1.3e-49	92.4
WP_046811259.1\|2457262_2458336_-\|plate	phage baseplate upper protein	Q9T1A3	Listeria_phage	9.1e-191	95.8
WP_046811260.1\|2458335_2459364_-	hypothetical protein	Q9T1A4	Listeria_phage	3.3e-190	98.5
WP_046811261.1\|2459364_2460390_-	phage minor structural protein	Q9T1A5	Listeria_phage	1.5e-182	88.6
WP_031645707.1\|2460398_2461217_-\|tail	phage tail family protein	Q9T1A6	Listeria_phage	3.8e-149	93.4
WP_046811262.1\|2461218_2466582_-	tape measure protein	Q9T1A7	Listeria_phage	0.0e+00	97.3
WP_003735024.1\|2466592_2467192_-	hypothetical protein	A0A0B5CTW0	Listeria_phage	1.9e-76	72.0
WP_003769943.1\|2467197_2467620_-\|tail	phage tail assembly chaperone	Q9T1A9	Listeria_phage	5.9e-69	97.9
WP_045552940.1\|2467672_2468005_-	Ig-like virion protein	Q9T1B0	Listeria_phage	1.5e-30	70.9
WP_012582409.1\|2467934_2468372_-	hypothetical protein	A0A0B5CYN3	Listeria_phage	4.2e-78	98.6
WP_031645710.1\|2468374_2468782_-	hypothetical protein	A0A0B5CU21	Listeria_phage	1.5e-66	98.5
WP_031645711.1\|2468781_2469120_-	hypothetical protein	A0A059T7W4	Listeria_phage	7.0e-57	97.3
WP_031645712.1\|2469119_2469482_-	hypothetical protein	A0A0B5D151	Listeria_phage	1.8e-58	91.7
WP_010989952.1\|2469481_2469877_-	hypothetical protein	A0A059T5E3	Listeria_phage	4.8e-65	97.7
WP_046811263.1\|2469895_2470897_-	hypothetical protein	A0A059T6D4	Listeria_phage	8.2e-186	99.4
WP_014601084.1\|2470896_2471487_-	scaffold protein	Q9T1B8	Listeria_phage	7.7e-75	91.5
WP_039393322.1\|2471565_2472705_-	hypothetical protein	A0A0B5D147	Listeria_phage	4.9e-203	96.8
WP_014601086.1\|2472710_2474201_-\|portal	phage portal protein	Q9T1C0	Listeria_phage	3.3e-284	99.6
WP_010990214.1\|2474213_2475545_-\|terminase	PBSX family phage terminase large subunit	A8ASJ2	Listeria_phage	1.1e-259	98.6
WP_010990213.1\|2475513_2476056_-\|terminase	terminase small subunit	A8ASJ1	Listeria_phage	5.4e-91	98.9
WP_010990212.1\|2476113_2476377_-	hypothetical protein	A0A0S2MYE7	Enterococcus_phage	1.7e-34	78.2
WP_009911405.1\|2476403_2476703_-	phage protein	A0A2H4JBC0	uncultured_Caudovirales_phage	3.8e-14	40.7
WP_003735131.1\|2477097_2477532_-	hypothetical protein	A8ASQ1	Listeria_phage	4.3e-75	99.3
WP_031644575.1\|2477550_2477715_-	hypothetical protein	A8ASQ0	Listeria_phage	7.4e-20	94.4
WP_031644573.1\|2477843_2478248_-	endodeoxyribonuclease	A8AU00	Listeria_phage	2.7e-71	98.5
WP_003759675.1\|2478213_2478354_-	BH0509 family protein	A8ATZ9	Listeria_phage	4.7e-15	87.0
WP_039382681.1\|2478350_2478656_-	hypothetical protein	A8ATZ8	Listeria_phage	1.9e-37	83.2
WP_046811264.1\|2478687_2479167_-	single-stranded DNA-binding protein	A0A059T5E0	Listeria_phage	5.4e-79	94.4
WP_020830693.1\|2479166_2479445_-	hypothetical protein	NA	NA	NA	NA
WP_020830692.1\|2479441_2479843_-	hypothetical protein	A0A059T6C9	Listeria_phage	1.9e-53	76.7
WP_046811265.1\|2479839_2480040_-	hypothetical protein	NA	NA	NA	NA
WP_046811266.1\|2480243_2480924_-	pentapeptide repeat-containing protein	A0A060AFJ6	Listeria_phage	1.2e-34	94.7
WP_046811267.1\|2481094_2481616_-	hypothetical protein	A0A059T7V5	Listeria_phage	2.4e-32	47.8
WP_031670092.1\|2481612_2482161_-	DUF1642 domain-containing protein	A0A059T7S4	Listeria_phage	3.7e-71	75.3
WP_023548471.1\|2482157_2482838_-	hypothetical protein	A8ATD7	Listeria_phage	3.3e-122	97.8
WP_031644274.1\|2482850_2483795_-\|integrase	site-specific integrase	A8ATD6	Listeria_phage	4.5e-178	98.4
WP_031690742.1\|2483805_2484519_-	SAM-dependent DNA methyltransferase	A8ATD5	Listeria_phage	7.7e-130	97.9
WP_031644200.1\|2484515_2485448_-	DnaD domain-containing protein	A8ATY7	Listeria_phage	2.6e-149	89.3
WP_031644198.1\|2485467_2486283_-	recombinase RecT	Q9T172	Listeria_phage	1.7e-144	94.8
WP_031644196.1\|2486285_2487245_-	hypothetical protein	Q9T173	Listeria_phage	8.7e-153	83.1
WP_031644195.1\|2487476_2487665_-	hypothetical protein	A8ATY3	Listeria_phage	1.3e-28	98.4
WP_031644193.1\|2487772_2487988_-	hypothetical protein	Q9T176	Listeria_phage	1.8e-26	87.3
WP_031644191.1\|2487980_2488517_-	hypothetical protein	Q9T177	Listeria_phage	7.2e-80	88.1
WP_046811268.1\|2488638_2489418_-	antirepressor	A0A059T6E7	Listeria_phage	3.8e-138	96.1
2488954:2488969	attR	NA	NA	NA	NA
WP_025370647.1\|2489481_2489724_+	hypothetical protein	A0A059T7Q3	Listeria_phage	1.5e-37	98.8
WP_003769995.1\|2489909_2490191_-	hypothetical protein	Q9T180	Listeria_phage	1.4e-39	96.8
WP_003733634.1\|2490187_2490424_-	hypothetical protein	A0A059T5E9	Listeria_phage	3.3e-37	100.0
WP_003769996.1\|2490463_2490748_-	hypothetical protein	A0A0B5D168	Listeria_phage	1.6e-46	98.9
WP_003735007.1\|2490759_2490954_-	hypothetical protein	A0A059T6E5	Listeria_phage	1.3e-26	100.0
WP_003727743.1\|2491177_2491444_-	hypothetical protein	A0A059T7Q1	Listeria_phage	2.5e-41	100.0
WP_003731220.1\|2491447_2491699_-	helix-turn-helix transcriptional regulator	A8ATX6	Listeria_phage	7.6e-40	100.0
WP_009911345.1\|2491847_2492156_+	helix-turn-helix transcriptional regulator	A8ATX5	Listeria_phage	7.8e-47	98.0
WP_009911346.1\|2492186_2492678_+	bacteriophage gp35-type protein	A8ATX4	Listeria_phage	1.1e-90	98.8
WP_025370648.1\|2492700_2492919_+	zinc-ribbon domain-containing protein	A0A059T6E3	Listeria_phage	1.3e-32	97.2
WP_003770013.1\|2492934_2493657_+	hypothetical protein	A0A059T7P9	Listeria_phage	7.4e-88	84.6
WP_003770015.1\|2493678_2494554_+	hypothetical protein	A0A0B5D0D1	Listeria_phage	2.2e-150	94.5
WP_009911646.1\|2494617_2495976_+	recombinase family protein	Q8LTD8	Listeria_phage	2.0e-251	97.1
WP_031644186.1\|2495966_2496443_+	competence protein ComK	NA	NA	NA	NA
WP_003739618.1\|2496497_2496845_-	helix-turn-helix transcriptional regulator	A0A0A7RTK4	Clostridium_phage	9.9e-06	40.7

DBSCAN-SWA_7

2641167 : 2649009

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003725407.1\|2641167_2642139_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4
WP_003731212.1\|2642146_2643115_-	YvcK family protein	A1IMD5	Streptococcus_phage	1.8e-68	43.6
WP_003722606.1\|2643116_2643992_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.9e-08	29.7
WP_003725409.1\|2644099_2645830_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	9.5e-174	53.1
WP_009918600.1\|2645871_2646933_-	galactose mutarotase	NA	NA	NA	NA
WP_009918601.1\|2646949_2647933_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	3.1e-52	38.7
WP_003722610.1\|2648049_2649009_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.0e-88	53.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP011399

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

104 : 49051

Listeria_phage(27.59%)

holin,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061449523.1\|104_989_+	hypothetical protein	A0A059T7Y6	Listeria_phage	3.7e-174	99.0
WP_046811196.1\|978_2070_+	hypothetical protein	A0A059T7R4	Listeria_phage	1.7e-189	91.8
WP_003733957.1\|2120_2426_+	hypothetical protein	A0A059T5E6	Listeria_phage	1.8e-43	100.0
WP_003723294.1\|2425_2707_+\|holin	phage holin	A8ATW3	Listeria_phage	3.0e-45	100.0
WP_025370596.1\|2706_3414_+	M15 family metallopeptidase	A8ATW4	Listeria_phage	1.0e-129	97.9
WP_025370597.1\|3561_4263_+	DUF3800 domain-containing protein	R4IBV1	Listeria_phage	6.4e-129	97.8
WP_014930932.1\|4741_4975_+	hypothetical protein	A8ATX0	Listeria_phage	2.3e-35	94.8
WP_031672409.1\|4971_5163_+	hypothetical protein	A8ATC6	Listeria_phage	1.7e-28	98.4
WP_003728469.1\|7253_10169_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.9e-174	36.7
WP_003728468.1\|10172_10727_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	7.0e-38	53.4
WP_003728467.1\|11006_11366_+	Cd(II)-sensing metalloregulatory transcriptional repressor CadC	E4ZFI8	Streptococcus_phage	3.1e-26	50.0
WP_003728466.1\|11365_13501_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.6e-247	64.5
WP_003728465.1\|13693_14035_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_003728464.1\|14028_14271_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_003728463.1\|14331_14583_-	hypothetical protein	NA	NA	NA	NA
WP_003728462.1\|14713_15040_+	hypothetical protein	A0A2K9V3N4	Faecalibacterium_phage	3.2e-06	40.8
WP_003731676.1\|15039_15702_+	DUF2786 domain-containing protein	NA	NA	NA	NA
WP_003728521.1\|15714_16098_+	DUF3850 domain-containing protein	C9E2N9	Enterococcus_phage	2.2e-14	53.4
WP_003728520.1\|16256_16745_+	hypothetical protein	NA	NA	NA	NA
WP_003728519.1\|16866_17115_+	hypothetical protein	NA	NA	NA	NA
WP_003728518.1\|17115_17541_+	hypothetical protein	NA	NA	NA	NA
WP_003728517.1\|17544_18267_+	CRISPR-associated protein Cas5	NA	NA	NA	NA
WP_003731678.1\|18282_18999_+	AP2 domain-containing protein	O03945	Lactobacillus_phage	3.8e-20	31.0
WP_003728514.1\|19972_20227_-\|transposase	transposase	Q6J1X3	Lactobacillus_phage	1.6e-13	46.4
WP_003728513.1\|20750_22517_+	hypothetical protein	NA	NA	NA	NA
WP_003728512.1\|22528_23269_+	hypothetical protein	NA	NA	NA	NA
WP_003728511.1\|23556_24165_+	recombinase family protein	A0A1W5LU24	Ralstonia_phage	1.0e-21	42.9
WP_003728510.1\|24154_24382_+	hypothetical protein	NA	NA	NA	NA
WP_003731679.1\|24501_24780_-	hypothetical protein	NA	NA	NA	NA
WP_003728509.1\|24742_24979_+	helix-turn-helix transcriptional regulator	A0A097PBE6	Streptococcus_pyogenes_phage	6.7e-14	53.4
WP_003728507.1\|25406_27521_+\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	3.4e-117	39.1
WP_013315188.1\|27796_29137_+\|transposase	IS3 family transposase	A0A0C5AC89	Paenibacillus_phage	1.1e-31	38.6
WP_003728505.1\|29311_30046_+	AAA family ATPase	NA	NA	NA	NA
WP_003728504.1\|30250_30595_+	hypothetical protein	NA	NA	NA	NA
WP_003728503.1\|30582_31863_+	Y-family DNA polymerase	O64031	Bacillus_phage	5.2e-92	44.9
WP_003728502.1\|31913_32210_-	hypothetical protein	NA	NA	NA	NA
WP_003728501.1\|32187_33162_-	AAA family ATPase	F0PIG8	Enterococcus_phage	2.4e-33	35.0
WP_003728500.1\|33901_35536_+	plasmid replication protein	NA	NA	NA	NA
WP_003728499.1\|35810_36566_+	hypothetical protein	NA	NA	NA	NA
WP_023553716.1\|36599_37187_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.5e-33	41.7
WP_003755398.1\|37278_38076_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	3.3e-81	63.2
WP_003728496.1\|38044_39271_-\|transposase	IS21 family transposase	A0A059NT83	Lactococcus_phage	4.7e-135	60.6
WP_013315183.1\|39482_39599_+	hypothetical protein	NA	NA	NA	NA
WP_003728495.1\|39614_39851_+	hypothetical protein	NA	NA	NA	NA
WP_003731844.1\|39813_40203_+	hypothetical protein	NA	NA	NA	NA
WP_003728493.1\|40205_41123_+	hypothetical protein	NA	NA	NA	NA
WP_003728492.1\|41520_41760_+	hypothetical protein	NA	NA	NA	NA
WP_003728491.1\|41771_42212_+	hypothetical protein	NA	NA	NA	NA
WP_003728490.1\|42204_43545_+	hypothetical protein	NA	NA	NA	NA
WP_003728489.1\|43555_43927_+	hypothetical protein	NA	NA	NA	NA
WP_012952172.1\|43946_44711_+	Fic family protein	A0A0G3Y4Q5	Ostreid_herpesvirus	2.6e-06	29.4
WP_003728487.1\|44824_45355_+	hypothetical protein	NA	NA	NA	NA
WP_003728486.1\|45391_45727_-	helix-turn-helix transcriptional regulator	A0A139ZPK3	Marinitoga_camini_virus	2.8e-05	35.0
WP_011011011.1\|45900_46299_+	hypothetical protein	NA	NA	NA	NA
WP_012952173.1\|47011_47356_+	TnpV protein	NA	NA	NA	NA
WP_072235488.1\|47397_47805_+	hypothetical protein	H2DE57	Erwinia_phage	1.4e-11	46.0
WP_002389568.1\|48370_49051_-\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	2.6e-119	90.7

DBSCAN-SWA_2

56233 : 65698

Listeria_phage(100.0%)

integrase

attL 60041:60054|attR 65555:65568

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046811282.1\|56233_57388_-\|integrase	site-specific integrase	A0A059T688	Listeria_phage	4.4e-207	94.3
WP_046811283.1\|57519_58092_-	hypothetical protein	NA	NA	NA	NA
WP_052750973.1\|58143_58596_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	2.3e-71	84.0
WP_003730992.1\|58612_58936_-	helix-turn-helix transcriptional regulator	A0A059T6G1	Listeria_phage	7.2e-35	71.0
WP_159420750.1\|59216_59372_+	hypothetical protein	NA	NA	NA	NA
WP_025370565.1\|59395_59713_-	hypothetical protein	NA	NA	NA	NA
WP_009929536.1\|59778_59982_+	helix-turn-helix transcriptional regulator	A0A059T5F8	Listeria_phage	3.1e-28	100.0
WP_015987310.1\|59983_60226_+	hypothetical protein	A8ATD2	Listeria_phage	1.4e-43	100.0
60041:60054	attL	NA	NA	NA	NA
WP_023548967.1\|60228_60414_+	hypothetical protein	A0A059T7Z3	Listeria_phage	4.4e-29	98.4
WP_023548965.1\|60937_61651_+	SAM-dependent DNA methyltransferase	A8ATD5	Listeria_phage	5.4e-131	98.3
WP_023548963.1\|61661_62606_+\|integrase	site-specific integrase	A8ATD6	Listeria_phage	2.7e-178	99.0
WP_009928035.1\|62618_63299_+	hypothetical protein	A8ATD7	Listeria_phage	1.1e-120	96.5
WP_023548961.1\|63295_63871_+	DUF1642 domain-containing protein	Q8W5X2	Listeria_phage	1.0e-31	42.9
WP_023548959.1\|63863_64052_+	hypothetical protein	NA	NA	NA	NA
WP_031643753.1\|64213_64420_+	hypothetical protein	NA	NA	NA	NA
WP_046811284.1\|64406_64811_+	hypothetical protein	R4ICD6	Listeria_phage	1.2e-42	66.4
WP_046811189.1\|64984_65698_+	pentapeptide repeat-containing protein	A8ATE4	Listeria_phage	1.9e-35	89.0
65555:65568	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011398

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP011399

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection