CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011397	Listeria monocytogenes strain CFSAN007956 chromosome, complete genome	2 crisprs	DinG,cas3,WYL,casR,DEDDh,csa3	0	2	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011397_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011397_1

534271-534885

Orphan

I-A

Consensus_repeat	Method
GTTTTAGTTACTTATTGTGAAATGTAAAT	PILER-CR
GTTTTAGTTACTTATTGTGAAATGTAAAT	CRISPRCasFinder

9 spacers

The CRISPR arrays of NZ_CP011397_1

>merge|NZ_CP011397|1|534271-534885|PILER-CR,CRISPRCasFinder
GTTTTAGTTACTTATTGTGAAATGTAAATAGCGTTTTTCTTTTTCGCTTCATTTGATAAATCTTCCGTTTTAGTTACTTATTGTGAAATGTAAATAGTATTTACTTAGACAAACGCGCTCAAATTGAGCATGTTTTAGTTACTTATTTTGAAATGTAAATACAGTCAGTTTGTGCTCATTCACTTGAACTGCATCTTTGTTTTAGTTACTTATTTTGAAATGTAAATAGCGCAACAGGTGCCATATACAAACTGCCTTTTTTTCGTTTTAGTTACTTATTGTGAAATGTAAATGAACCAGTAAGCATCATATTTTTATGAATTGCTTTTAGTTTTAGTTACTTATTGTGAAATGTAAATGAATTATTAGAAAAAATGAAGCAACAAGGTATTGAAGTTTTAGTTACTTATTGTGAAATGTAAATTTTTACATGGGAGTCAAAAGAGCAACTTAATATACTGTTTTAGTTACTTATTTTGAAATGTAAATGTTGGTAGGTTTAACCAAAGATGATCACCATGTCGTTTTAGTTACTTATTGTGAAATGTAAATATGTCCCACTGCTCAATTTTTAACGGGACTCCAGGTTTTAGTTACTTATTATGAAATGTAAAT

>NZ_CP011397|1|1|534271-534885|PILER-CR
GTTTTAGTTACTTATTGTGAAATGTAAAT	AGCGTTTTTCTTTTTCGCTTCATTTGATAAATCTTCC
GTTTTAGTTACTTATTGTGAAATGTAAAT	AGTATTTACTTAGACAAACGCGCTCAAATTGAGCAT
GTTTTAGTTACTTATTTTGAAATGTAAAT	ACAGTCAGTTTGTGCTCATTCACTTGAACTGCATCTTT
GTTTTAGTTACTTATTTTGAAATGTAAAT	AGCGCAACAGGTGCCATATACAAACTGCCTTTTTTTC
GTTTTAGTTACTTATTGTGAAATGTAAAT	GAACCAGTAAGCATCATATTTTTATGAATTGCTTTTA
GTTTTAGTTACTTATTGTGAAATGTAAAT	GAATTATTAGAAAAAATGAAGCAACAAGGTATTGAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTTTACATGGGAGTCAAAAGAGCAACTTAATATACT
GTTTTAGTTACTTATTTTGAAATGTAAAT	GTTGGTAGGTTTAACCAAAGATGATCACCATGTC
GTTTTAGTTACTTATTGTGAAATGTAAAT	ATGTCCCACTGCTCAATTTTTAACGGGACTCCAG
GTTTTAGTTACTTATTATGAAATGTAAAT

>NZ_CP011397|1|1|534271-534885|CRISPRCasFinder
GTTTTAGTTACTTATTGTGAAATGTAAAT	AGCGTTTTTCTTTTTCGCTTCATTTGATAAATCTTCC
GTTTTAGTTACTTATTGTGAAATGTAAAT	AGTATTTACTTAGACAAACGCGCTCAAATTGAGCAT
GTTTTAGTTACTTATTTTGAAATGTAAAT	ACAGTCAGTTTGTGCTCATTCACTTGAACTGCATCTTT
GTTTTAGTTACTTATTTTGAAATGTAAAT	AGCGCAACAGGTGCCATATACAAACTGCCTTTTTTTC
GTTTTAGTTACTTATTGTGAAATGTAAAT	GAACCAGTAAGCATCATATTTTTATGAATTGCTTTTA
GTTTTAGTTACTTATTGTGAAATGTAAAT	GAATTATTAGAAAAAATGAAGCAACAAGGTATTGAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTTTACATGGGAGTCAAAAGAGCAACTTAATATACT
GTTTTAGTTACTTATTTTGAAATGTAAAT	GTTGGTAGGTTTAACCAAAGATGATCACCATGTC
GTTTTAGTTACTTATTGTGAAATGTAAAT	ATGTCCCACTGCTCAATTTTTAACGGGACTCCAG
GTTTTAGTTACTTATTATGAAATGTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011397.1\|WP_003721297.1\|535962_536643_+\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153212
NZ_CP011397.1\|WP_003721298.1\|536667_537027_-\|Lin0512-family-protein	unknown	unknown	gnl\|CDD\|131113
NZ_CP011397.1\|WP_031665228.1\|540287_541718_-\|CapA-family-protein	unknown	unknown	gnl\|CDD\|225399
NZ_CP011397.1\|WP_003733192.1\|528146_528749_+\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223865
NZ_CP011397.1\|WP_003727295.1\|543449_544865_+\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP011397.1\|WP_003721303.1\|541838_542654_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_CP011397.1\|WP_014601716.1\|529669_530320_+\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|223114
NZ_CP011397.1\|WP_003721294.1\|531686_532958_+\|PTS-galactitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226298
NZ_CP011397.1\|WP_009924745.1\|529260_529659_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011397.1\|WP_045599053.1\|526082_528143_+\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_CP011397.1\|WP_009930754.1\|535276_535855_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011397.1\|WP_039384030.1\|537873_539709_+\|lmo0514-family-class-1-internalin	unknown	unknown	gnl\|CDD\|380190
NZ_CP011397.1\|WP_003730559.1\|530316_531363_+\|galactitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|176198
NZ_CP011397.1\|WP_003733187.1\|537033_537492_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378956
NZ_CP011397.1\|WP_003721301.1\|539809_540241_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP011397.1\|WP_003721293.1\|531378_531672_+\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99908
NZ_CP011397.1\|WP_003727296.1\|542934_543303_-\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|226282
NZ_CP011397.1\|WP_003733191.1\|528776_529244_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129
NZ_CP011397.1\|WP_003733190.1\|533097_534033_+\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_CP011397.1\|WP_045599057.1\|525323_525974_+\|transaldolase	unknown	unknown	gnl\|CDD\|223254

Protein	Function_ID	Function_description	E-value
NZ_CP011397.1\|WP_003721297.1\|535962_536643_+\|type-1-glutamine-amidotransferase	gnl\|CDD\|153212	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.	7.71833e-60
NZ_CP011397.1\|WP_003721298.1\|536667_537027_-\|Lin0512-family-protein	gnl\|CDD\|131113	TIGR02058, lin0512_fam, conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus. [Hypothetical proteins, Conserved].	5.62162e-67
NZ_CP011397.1\|WP_031665228.1\|540287_541718_-\|CapA-family-protein	gnl\|CDD\|225399	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane].	6.70557e-100
NZ_CP011397.1\|WP_003733192.1\|528146_528749_+\|SIS-domain-containing-protein	gnl\|CDD\|223865	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane].	1.15952e-75
NZ_CP011397.1\|WP_003727295.1\|543449_544865_+\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	3.97112e-80
NZ_CP011397.1\|WP_003721303.1\|541838_542654_-\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	5.01016e-50
NZ_CP011397.1\|WP_014601716.1\|529669_530320_+\|ribulose-phosphate-3-epimerase	gnl\|CDD\|223114	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism].	5.38202e-108
NZ_CP011397.1\|WP_003721294.1\|531686_532958_+\|PTS-galactitol-transporter-subunit-IIC	gnl\|CDD\|226298	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism].	7.01085e-178
NZ_CP011397.1\|WP_045599053.1\|526082_528143_+\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	1.2248e-79
NZ_CP011397.1\|WP_039384030.1\|537873_539709_+\|lmo0514-family-class-1-internalin	gnl\|CDD\|380190	NF033186, internalin_K, class 1 internalin InlK. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. Members of this family are internalin K (InlK), a virulence factor. See articles PMID:17764999. for a general discussion of internalins, and PMID:21829365, PMID:22082958, and PMID:23958637 for more information about internalin K.	1.24301e-119
NZ_CP011397.1\|WP_003730559.1\|530316_531363_+\|galactitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|176198	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex.	0
NZ_CP011397.1\|WP_003733187.1\|537033_537492_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|378956	pfam12802, MarR_2, MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.	1.03599e-12
NZ_CP011397.1\|WP_003721301.1\|539809_540241_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	4.03126e-27
NZ_CP011397.1\|WP_003721293.1\|531378_531672_+\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99908	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	3.06007e-27
NZ_CP011397.1\|WP_003727296.1\|542934_543303_-\|DUF1304-domain-containing-protein	gnl\|CDD\|226282	COG3759, COG3759, Predicted membrane protein [Function unknown].	2.33548e-41
NZ_CP011397.1\|WP_003733191.1\|528776_529244_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	2.76446e-37
NZ_CP011397.1\|WP_003733190.1\|533097_534033_+\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	1.26262e-153
NZ_CP011397.1\|WP_045599057.1\|525323_525974_+\|transaldolase	gnl\|CDD\|223254	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism].	5.50994e-63

>NZ_CP011397.1|WP_003733190.1|533097_534033_+|ribose-phosphate-pyrophosphokinase
MAGKMKLFSVTSERPLATKIADYLDIPLCEVELQKFSDGEVKINIEESIRGTNAYVVQSMNSNVNERLMELLIMVDALKRASVHSINIIMPYYGYARQDRKARSREPITAKLMANLIQRAGANRLITVDLHAAQIQGFFNIPIDHLSAIPLIGDYLIENYGEKDVVVVAPDHSGVVRARRIADRLNAPIAILNRKPRPHEDEIMSVIGDVKGKVAIVVDDIIDTGVRATTSADILLEKGAVEVIACATHSVMAGNATERLQNSNIKEVITSDSIDLPEDKQFDKLTTISIGRILGRAIEGVQENRSLHPLF
>NZ_CP011397.1|WP_003721294.1|531686_532958_+|PTS-galactitol-transporter-subunit-IIC
MDIILDFFKYIIGLGVTVMMPIIITILGVIFRKKISVAFKAGLTVGVGFVGLGVITSLMLTTITPVTKALVENYNFKLTATDIGWGVGSSLAWGTEVVPFVFVAIIATNILMIAFKWTKTMDVDIWNYWQPLFIASALYLTTGSMIIAVLSSIINMAIIFKIADWTQKDVEDVLGLEGISLPQIQTTGWALVGYPMNWLLGKIPGVRKINWSTEKVQSRLGIFGEPMLMGLIIGGGLAAIAQMPLSQVLQTGVTIAASLVLIPRMVSLLMDGLTVISEAAHEFMEKRFPGRELFIGLDSAVGIGHPFVLSLGLLMIPITLILAFILPGNKVLPLADLTALPFYMIFAIVPSKGNLFRGIFTGIVIVIITLYLSGAAAPLMTELAGQIGYNIPKDAVEVTSLAVGTQWYTWIVYYGLHWFGGIL
>NZ_CP011397.1|WP_003721293.1|531378_531672_+|PTS-sugar-transporter-subunit-IIB
MKKKRIYVCCGTGIATSTVISKKVRAVLDEKRIPYEISQCTVQEVASKVSTSKPDIIVSSTTVTGDVGDVPVVIGRSFLTGLKKQETIDEILAILQD
>NZ_CP011397.1|WP_003730559.1|530316_531363_+|galactitol-1-phosphate-5-dehydrogenase
MKALKLYGKRDLRYEEADMPTIEQPDDVILKVKTVGICGSDISRYSKLGPYVPGMVWGHEFSGEVIEVGSEVTDIEIGDRAAGCPALYCGECEYCKKGEFARCRKLTVIGARHPGAYAEYIKLPAENVVKIPDELDYEAAALVEPSAVVVHGFYHTKLQAGDDVVVVGSGNIGLLAIQWAKVFGARRVIAIDVDDKKLALAKEVGADVVINSLKEDPLEVVAAHTDGLNADLVVEAAGSPITSAQVFAYAKKGGGVVFLGIPYADVTIERFYFEKIVRSELTVWGSWNAISAPFPGKEWQTTIHFLANKQINIEPMITHRLSLAEGPEVFERIYERNEFFGKVLFFPE
>NZ_CP011397.1|WP_014601716.1|529669_530320_+|ribulose-phosphate-3-epimerase
MAKIVPSVFGADIGRINEQLQVLEKNDIDLLHVDMMDGSFVPNIAFGPDQIKMMKKGTKLQFDVHMMVYEPDRYIPRLVEAGAHMITVHQEATTHLHRTIQLIKSYGVRAGVVLNPGTPPSTLEYVLDDIDCILLMTVNPGLGGQKFFQSSLEKIRKTKAYIGNRPIQIEVDGGVNAELAKECTLAGADLIVVGSYLFEGDIEANLEKLSKGVLTE
>NZ_CP011397.1|WP_009924745.1|529260_529659_+|hypothetical-protein
MGSFFASFVDWLIGSPGRFVVNLIEDNMLIFMFVVMIYATTILYAKWTLAYYLPKKMSQLAEMKTWELDELYAAWQTEKKALPWYILVPSRNEFWVKSARNAPESTKLLHFSQQKLKLSDKEKLQKIIEIQS
>NZ_CP011397.1|WP_003733191.1|528776_529244_+|PTS-sugar-transporter-subunit-IIA
MDVLEYFKEEMVRFSNEQNKEKLLAEMAEQLCEVGAVKPSYKDAVIKREKVFPTGLLTAHAGVAIPHTDSEHVIRPVVAVRILKKPVSFIEMASDNEAIDVRIVFMMALRSADEQLDMLQTLIQLIQDEEVMTTLLKAQETGDVLSAIEHFSKNN
>NZ_CP011397.1|WP_003733192.1|528146_528749_+|SIS-domain-containing-protein
MDKQAILNNIHQTWQEEANAISRLPEVTSEEALVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTMAVIASFDAVIVCLMTYMNYTKEQFSVIHPGGAVGNKLLNK
>NZ_CP011397.1|WP_045599053.1|526082_528143_+|BglG-family-transcription-antiterminator
MYLDNRSKTLFQEVIKNPNITNKQLEVKYKLSRYQISYSFQKVNEWLKWKNYPEVKRSKNGRFILEPELTALFSEKETRDPSVEYLPSENERANLILLMLLTSKEELSLAHFTTKIQVSKNTILRDLKVAQKLLPKETTVTYSRASGYQLAGSEWELRKVLTQVVSSVKEMFRGEHYFLSYSGIEKVQLMEIRRTLEEAEAMMQIKFTYEQIELLPYLLSVMFLRIRDRRLIDTAFHIDEKSLSDTREYHITDILLEKTGPVPEQERLFITLQLLTTNIFSGEILTEKLTEDLEKVVLTCLDLFEKKALVSLKNKHILIEKLLLHLKPAYYRIKYQMNLEDTLYEKFNQEFEALNFIVKEAFDPLAKFIGREIPAGEIFFISLFIGSDMIPQNDIYHKQKRAIVLCPSGVTFSKIMENILVKLFPEIHFYPTISVREYAFFKAEVDIVFSSIPLKNGENVFVVQPFMNDIEKTQLRQHVLQNLFGMGNQLTSIDKIMEVVERNADIKDPNAIRDGIIDILSANTATDENKRVKKVYLHDLITEDNIMICEDVKNYQEAIRLASQPLLLQQAITANYVKTMIDNHKFHDPYIIIGEDIAIPHAMPNAGVNRLAMSLLVVKNGVYFSETEQVHFVIVIAPVDKEQHIEALYQIVHLAENHQILDDLLENVTKEKIMQTINQLVIREDE
>NZ_CP011397.1|WP_045599057.1|525323_525974_+|transaldolase
MHLDSANLDDVKKIQASSIFKGITTNPTILVKEKCNRQTAINRILELTDKQVFVQTVGFSYEEILADARMLLAMFGKEKIAIKIPAHEAGINVIDTLKKEDKTIQILGTAIYSADQAITAALAGADFVAPYVNRMSAANIDPFKEITQMRHFFDKKALKTQIMAASFKHSGQVMQAYESGADTVTIPYEIYSQMTNKVLAVEAIRVFNEDAVLYEK
>NZ_CP011397.1|WP_009930754.1|535276_535855_+|hypothetical-protein
MKKILVPILLLATILASCSSPNEKITKDTKISKTITIRADYKVPKDIKELEDDSANIVKVKFLQNKTIGKDGSTISEIEILTSYKGNLEKGSKVDISEPWYLSDGKYVAVENYIALDKEQEYTIFLGEKDKDTYPLSSLGYGKFGGSLKEDQAVLADFNILGEVQKFDFISENTEEVKNYQLIKEQVAGKYK
>NZ_CP011397.1|WP_003721297.1|535962_536643_+|type-1-glutamine-amidotransferase
MIIDVLQHVPHEGPGLIANWARENQHQLKIHSLFEENAHVPNDSDFLIVLGGPMGINDTAEFPWLKDERKLIKRLSEQHKPVFGVCLGAQQIAATFGSEITVNKEKEVGWFPVKRTSDKLLFFPESLNVFHWHQDTFALPTGSTRLFASEGCLNQAFLYGENIIGLQFHFEMEKAGIETILRIDEAFITPGKYVQSVEVMREKDVPEDNKQMLEAILDYLINPKTI
>NZ_CP011397.1|WP_003721298.1|536667_537027_-|Lin0512-family-protein
MEQILFIQTGFGVDVHGQNITKAAERAVRNAIFTNSMPGIQGLLPDGDLQNMVVNIKLALPCDADQLDEDTIRAIIPYGTVTIEKMAGGMMTTSGIFLEDKEDKNDLMYIVNASVETGY
>NZ_CP011397.1|WP_003733187.1|537033_537492_-|MarR-family-transcriptional-regulator
MNNEQNMNQQIALFYFGYKAFTETADLIIAKHSLKRLHHRILFFTARMPGLTINELLTFLEISKQALHQPLAELKERELLTIEQGRRDKRQRCIFLTAAGKELENELGAAQRKQMSEIFTNSADTDGMHFTEVMEGYAKNRPGAAFIKDFKE
>NZ_CP011397.1|WP_039384030.1|537873_539709_+|lmo0514-family-class-1-internalin
MKKALKLFLATICMFIMIYPSTAAHAEETNIVNIPDANLKTYLNGLLKQASDAPITKTQMNTIQTVTLSGSTYTDLTGLEEAGNLVTLSINNTNIQTLEPIKNQTSLTYLTVGGDNVKDSLFVDLNGLVNLQSLSINGSEVTHNVFKTFNKLPKLTYLYAQNSMKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALAAFGQNTGRTNPRITLKSGKLDYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNTYLGFNDVALPSARLSITEDGITVSGVTKEEFDNLDEIEYNARYDFPTGSYPTPPSMTSYTISSGTYDQYFDISHTLDLTADESFDYNQYDATSEEQFLKDVHAETDDGTAVKSDFDQVVKLDVPGEYTVTLNAENAAGLKATPVTVKVTVHEKPVITSDSQISYKKETTKSVDEFLKEIHGSVTGNAVLTSDFDKVVDLNTPGEYTVTLNAINDRGQKADPVTVVVTVTTSDSGHVDPVPPTPEIKPTPQEETDQTIIPEPQSETTEDSVKEDQAKDGQAKSEEKADKTSLTTKENKVEKSEKTNQPKTKALPQTGDTNKTALPIAGVMLSLAALLIFRKSKS
>NZ_CP011397.1|WP_003721301.1|539809_540241_+|universal-stress-protein
MEKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLGIASIVDLRAFSPNVSYDGSLEEKAELELKTSVNEYAEKARTAGVKQVETFVAKGNPKILLSTDIPAEFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR
>NZ_CP011397.1|WP_031665228.1|540287_541718_-|CapA-family-protein
MKKLTYVIITGLVLVFIAGAFWITNSTNQSDQKATQTEPLKKTSPANVKTISSEAKKTLNSLASSGADKASISDLKQLIKELKSYPTEKNDSGVYLQNLTACLEAVKSYTTGKTDEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTVINAESAFTNATKAENKKWRIKSDPAHVAFLPASGVEAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNTDAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKEDTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIEGGVTEYTYFDPF
>NZ_CP011397.1|WP_003721303.1|541838_542654_-|histidine-phosphatase-family-protein
MKKNIFKLLMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTANLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGLSPKDFANSVAALDKTRVKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSHGLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK
>NZ_CP011397.1|WP_003727296.1|542934_543303_-|DUF1304-domain-containing-protein
MAILAFILTFIVMIEHIYIMILEMFFANTKLAAKTFGVEKELLANKKVQTLFANQGLYNGFLAAGLVWGLFFAGAGFAETVQIFFLSCVVVAALFGGATSSKGILVKQGLPAVLALVAVLLV
>NZ_CP011397.1|WP_003727295.1|543449_544865_+|multidrug-efflux-MFS-transporter
MQQEATGGQKIRPIPIIASFLMAGFIGLFSETALNMALSDLIQVFDISSATVQWLTTGYLLTLGILVPISGLLLQWFTTRGLFFTAVSFSIAGTLIAALSPTFAMLMIGRVVQAVGTALLLPLMFNTILLIFPEHKRGSAMGMIGLVIMFAPAVGPTISGLILENLTWNWIFWISLPFLIIALLFGMKFMQNVSVVTKPKIDILSIILSTLGFGGVVFAFSSAGESGWGSATVLVSIIVGGLALGLFVWRQLTMEKPLMDLKVFKYPMFTLGLILVFISFMMILSTMILLPLYLQNSLALAAFSAGLVLLPGGVLNGLMSPFTGRLFDAYGPRALVIPGFIVAVVALFFLTRIEVGTSALTIIVLHSVLMIGISMVMMPAQTNGLNQLPPKLYPDGTAIMNTLQQVSGAIGTAVAITIMSAGQKAYMETAQGVGPEQMVASLTAGIQNAFVFGLIMACIGLLCSLFIRKAK

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Crispr_ID: NZ_CP011397_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011397_2

2756574-2756684

Orphan

Consensus_repeat	Method
AGCGATGATTTAATCCTTCCCAGAACTTTCAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011397_2

>merge|NZ_CP011397|2|2756574-2756684|CRISPRCasFinder
AGCGATGATTTAATCCTTCCCAGAACTTTCAAAATGTACTTTATTTTGATTTAGTTCTTCAATATAAATCTGAGCAAAGCGATGATTTAATCCTTCCCAGAAGTTTCAAAA

>NZ_CP011397|2|2|2756574-2756684|CRISPRCasFinder
AGCGATGATTTAATCCTTCCCAGAACTTTCAAAA	TGTACTTTATTTTGATTTAGTTCTTCAATATAAATCTGAGCAA
AGCGATGATTTAATCCTTCCCAGAAGTTTCAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011397.1\|WP_045597919.1\|2752520_2753363_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|223729
NZ_CP011397.1\|WP_014602267.1\|2757809_2759174_-\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224372
NZ_CP011397.1\|WP_003722073.1\|2763312_2764251_-\|GW-domain-containing-glycosaminoglycan-binding-protein	unknown	unknown	gnl\|CDD\|226309
NZ_CP011397.1\|WP_045597920.1\|2757453_2757675_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011397.1\|WP_039384508.1\|2751560_2752400_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319818
NZ_CP011397.1\|WP_045597918.1\|2750590_2751442_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP011397.1\|WP_003722056.1\|2749510_2750107_+\|dihydroxyacetone-kinase-subunit-L	unknown	unknown	gnl\|CDD\|274099
NZ_CP011397.1\|WP_009913205.1\|2750110_2750485_+\|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit-DhaM	unknown	unknown	gnl\|CDD\|184702
NZ_CP011397.1\|WP_045599470.1\|2748499_2749489_+\|dihydroxyacetone-kinase-subunit-DhaK	unknown	unknown	gnl\|CDD\|237724
NZ_CP011397.1\|WP_003722065.1\|2756786_2757251_-\|DUF3284-domain-containing-protein	unknown	unknown	gnl\|CDD\|378692
NZ_CP011397.1\|WP_045597924.1\|2765382_2767122_-\|thiol-reductant-ABC-exporter-subunit-CydC	unknown	unknown	gnl\|CDD\|227320
NZ_CP011397.1\|WP_003722063.1\|2754373_2754691_-\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
NZ_CP011397.1\|WP_003722074.1\|2764293_2765241_-\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|273478
NZ_CP011397.1\|WP_003722061.1\|2753408_2753654_-\|YaaL-family-protein	unknown	unknown	gnl\|CDD\|378478
NZ_CP011397.1\|WP_031674848.1\|2754720_2756460_-\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|235505
NZ_CP011397.1\|WP_003727657.1\|2757268_2757451_-\|DUF3188-domain-containing-protein	unknown	unknown	gnl\|CDD\|371501
NZ_CP011397.1\|WP_009931588.1\|2759616_2759772_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011397.1\|WP_003722062.1\|2753668_2754265_-\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NZ_CP011397.1\|WP_009925039.1\|2760343_2760985_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011397.1\|WP_003732087.1\|2761682_2763197_-\|gluconokinase	unknown	unknown	gnl\|CDD\|212659

Protein	Function_ID	Function_description	E-value
NZ_CP011397.1\|WP_045597919.1\|2752520_2753363_+\|aldo/keto-reductase	gnl\|CDD\|223729	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only].	7.2257e-130
NZ_CP011397.1\|WP_014602267.1\|2757809_2759174_-\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|224372	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism].	4.45629e-162
NZ_CP011397.1\|WP_003722073.1\|2763312_2764251_-\|GW-domain-containing-glycosaminoglycan-binding-protein	gnl\|CDD\|226309	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown].	6.39605e-99
NZ_CP011397.1\|WP_039384508.1\|2751560_2752400_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	5.37738e-85
NZ_CP011397.1\|WP_045597918.1\|2750590_2751442_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	5.5246e-63
NZ_CP011397.1\|WP_003722056.1\|2749510_2750107_+\|dihydroxyacetone-kinase-subunit-L	gnl\|CDD\|274099	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the subunit homologous to the E. coli YcgS subunit.	3.29756e-82
NZ_CP011397.1\|WP_009913205.1\|2750110_2750485_+\|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit-DhaM	gnl\|CDD\|184702	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional.	2.28713e-49
NZ_CP011397.1\|WP_045599470.1\|2748499_2749489_+\|dihydroxyacetone-kinase-subunit-DhaK	gnl\|CDD\|237724	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional.	0
NZ_CP011397.1\|WP_003722065.1\|2756786_2757251_-\|DUF3284-domain-containing-protein	gnl\|CDD\|378692	pfam11687, DUF3284, Domain of unknown function (DUF3284). This family of proteins with unknown function appears to be restricted to Firmicutes.	5.35099e-31
NZ_CP011397.1\|WP_045597924.1\|2765382_2767122_-\|thiol-reductant-ABC-exporter-subunit-CydC	gnl\|CDD\|227320	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	0
NZ_CP011397.1\|WP_003722063.1\|2754373_2754691_-\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	3.53269e-41
NZ_CP011397.1\|WP_003722074.1\|2764293_2765241_-\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|273478	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain. This model describes the LPXTG motif-containing region found at the C-terminus of many surface proteins of Streptococcus and Streptomyces species. Cleavage between the Thr and Gly by sortase or a related enzyme leads to covalent anchoring at the new C-terminal Thr to the cell wall. Hits that do not lie at the C-terminus or are not found in Gram-positive bacteria are probably false-positive. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region. [Cell envelope, Other].	1.13667e-05
NZ_CP011397.1\|WP_003722061.1\|2753408_2753654_-\|YaaL-family-protein	gnl\|CDD\|378478	pfam10704, DUF2508, Protein of unknown function (DUF2508). This family is conserved in Firmicutes. Several members are annotated as being the protein YaaL. The function is not known.	2.68189e-15
NZ_CP011397.1\|WP_031674848.1\|2754720_2756460_-\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|235505	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated.	0
NZ_CP011397.1\|WP_003727657.1\|2757268_2757451_-\|DUF3188-domain-containing-protein	gnl\|CDD\|371501	pfam11384, DUF3188, Protein of unknown function (DUF3188). This bacterial family of proteins has no known function.	1.21027e-11
NZ_CP011397.1\|WP_003722062.1\|2753668_2754265_-\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	7.77001e-132
NZ_CP011397.1\|WP_003732087.1\|2761682_2763197_-\|gluconokinase	gnl\|CDD\|212659	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases. This subfamily is composed of a group of gluconate kinases (GntK, also known as gluconokinase; EC 2.7.1.12) encoded by the gntK gene, which catalyzes the ATP-dependent phosphorylation of D-gluconate and produce 6-phospho-D-gluconate and ADP. The presence of Mg2+ might be required for catalytic activity. The prototypical member of this subfamily is GntK from Lactobacillus acidophilus. Unlike Escherichia coli GntK, which belongs to the superfamily of P-loop containing nucleoside triphosphate hydrolases, members in this subfamily are homologous to glycerol kinase, xylulose kinase, and rhamnulokinase from Escherichia coli. They have been classified as members of the FGGY family of carbohydrate kinases, which contain two large domains separated by a deep cleft that forms the active site. This model spans both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Some uncharacterized homologous sequences are also included in this subfamily. The Lactobacillus gnt operon contains a single gntK gene. The gnt operons of some bacteria, such as Corynebacterium glutamicum, have two gntK genes. For example, the C. glutamicum gnt operon has both a gluconate kinase gntV gene (also known as gntK) and a second hypothetical gntK gene (also known as gntK2). Both gluconate kinases encoded by these genes belong to this family, however the protein encoded by C. glutamicum gntV is not included in this model as it is truncated in the C-terminal domain.	0

>NZ_CP011397.1|WP_031674848.1|2754720_2756460_-|DNA-polymerase-III-subunit-gamma/tau
MAYQALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDIIGRLKFILEEEKIPYEEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNLEETMERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQLTQAGQSVAGGGNVPADAASGSDVSDLKRQMEQMHQEIQTLKKQIASGAGAAPADKPTQNRGGSKKAINNGKQFKAPIGKINHVLGEAKKENLQLIRGCWGELLSMLMASQAALLNDAEPVAASQDTFVLKFKHEIHCQMAMDNPNFVETITSSIARLTQVNYTFIGIPEDQWADVRENFLHSHGSDADAEDGANPEAKKPAEDPFVAEAAKLVGEDLLEIKD
>NZ_CP011397.1|WP_003722063.1|2754373_2754691_-|YbaB/EbfC-family-nucleoid-associated-protein
MRGMGNMQGMMKQMQKMQKEMAKAQADLEAQEFTGTAGGGMVTVKATGKRVITDVVINEEVVDPEDIEMLQDLVLAATNDVLKQIEDTTSQTMGKFTQGLNIPGM
>NZ_CP011397.1|WP_003722062.1|2753668_2754265_-|recombination-protein-RecR
MHYPEPITKLIDSFMKLPGIGPKSAARLAFYVLDMKEDDVLDFAKALVDAKRNLSFCSVCGHITDKDPCYICADTSRDRSVICVVQESKDVIAMEKMRDFHGLYHVLHGTISPMDGIGPEDINIPDLLKRLQDDTIEEVILATNPNVEGEATAMYISRLLKPSGIKVTRIAHGLPVGGDLEYADEVTLSKAMEGRREV
>NZ_CP011397.1|WP_003722061.1|2753408_2753654_-|YaaL-family-protein
MESRSNKFGRKKNKKIGKLHKSYDAYLMELIEVTQENWHKQKVLMRKSFEYDPNLEYEEKKAEARYFYLFKEARTRQLKNK
>NZ_CP011397.1|WP_045597919.1|2752520_2753363_+|aldo/keto-reductase
MTLSFSDTYRLNNGIEMPRHGFGVYKLTDEARMRTALETAVDVGYRLFDTASFYHNEKELGDFFASSGLKRDEFFVTTKMWNTEQGYDETLRAFEKSQKKLQLDQIDLYLVHWPKQDTFFDTWRAVEKLYDEGLVRAIGVSNFEAHHLDRLRTSANVLPAVDQLETHPHFPNHLLHRYLEELHIVHQAWSPLGRGGVLQEQILIDLAEKHGKSPAQIVLRWHLQNNISIIPKSETPSRIRENAAIYDFELSEADMRQVERLNTGERVSHAPDVMYVRSEI
>NZ_CP011397.1|WP_039384508.1|2751560_2752400_+|Cof-type-HAD-IIB-family-hydrolase
MTTQAIILDIDGTLLNDDKKISPETKKALITAQQNGVKLILASGRPTTGMHVYAEQLEMEKHHGLLVSYNGAKVVDCATSEELFNQALTVEEGKAVLEHMKQFKVKVMIDKEDYMYTNDVYDCYVPYRGEEINIIQYESRGGNFKLCEKDDLAAFLDYRLSKILTAGDPAYMQKNYQAMMAPFKDTLNCVFTADFYFEFTAQGIDKAKALDTVLTPMGIHAENIIAFGDGHNDITMVEYAGTGIAMQNAVAELKAAASSVTLSNNEDGIAHVLNSLIPS
>NZ_CP011397.1|WP_045597918.1|2750590_2751442_+|MurR/RpiR-family-transcriptional-regulator
MNILIKIRELTNLTNSEKELANYILANPKKTLQFKPKELATAAFVSAATIYRLINKLGLNGIGELKIEIASSLRETSEEKDLNYDYPILESDTPYQIMTNLHQIYKGTIDETLNNADPEELVKIGEKLINAKTIDVYAASANLFFAQNFKFQMQEIGVLVNVPEEDYIQNLSAANSDENHIAIVVSYGGRSRTLQRVVKILSENNVDIILITSMQDNPLVEFATHKIYMASAENHYNKVSSFSTRQSLLSIFDTLYSIYFNQNYEKNIQYKTTNYQKMNTELE
>NZ_CP011397.1|WP_009913205.1|2750110_2750485_+|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit-DhaM
MTKPYGVVIISHSKDVAKGVHDIIKEIAPDVSITHAGGTEDGRIGTSFDAVNEAIESNEADKVYTFYDLGSAKMNIETVEEISEKEIILFNAPILEGAYATAAQVQMDEKPEVIAANLKTIEIK
>NZ_CP011397.1|WP_003722056.1|2749510_2750107_+|dihydroxyacetone-kinase-subunit-L
MTYDKDWALRWLNDFGERVQENKQLLSDLDQAIGDGDHGINMARGLGELKKAFTEKEPADLKDVFKTAGMTMVSKVGGASGPLYGTAFLNMSKAVDADTIDAVGLTKVIEAGLEGIEKRGKSHAGEKTMIDVWEPVVHALHQEDLTDDVVDAALQKTKDLKATKGRASYLGERSIGHLDPGAYSSALLFHAMLQTEVS
>NZ_CP011397.1|WP_045599470.1|2748499_2749489_+|dihydroxyacetone-kinase-subunit-DhaK
MKKILNGTNQVVEQMVEGLVKSHADVVHRVEGTRVIARNDKRPGKVGLVSGGGSGHEPAHAGYVGRGMLSAAVCGDVFTSPTPDQIYEGIKAADQGAGVLLIVKNYTGDVMNFEMAADLADADDIKVEQIVVDDDIAVEDSTFTTGRRGVAGTVLVHKIIGAAAEAGASLDELKALGEKVIASVKTLGVALSPCTVPEVGHPGFELGDDEIELGIGIHGEPGFTREKIMPSASLAKQLYERISNESKLLAGDKVVVLVNGMGATPLMEQYVFANDVHELLKNAGVQVEKTLVGDYMTSLEMAGLSLTILKLEDEKWVDMLKLPVDTIAW
>NZ_CP011397.1|WP_003722065.1|2756786_2757251_-|DUF3284-domain-containing-protein
MNVTQKLYISQKECFDTLVSSAIYDVKNATGKTLQVRKLEGYKYQRTMSNGALATTKIVKVQPNELYQFETSSRVNTHTTTYTIKSTSETTCEVTYNELIETEKALNKMNNIIVGFMFGFFRKKRVKNLLKSIELSVINESKQKQEKLAAKSEQ
>NZ_CP011397.1|WP_003727657.1|2757268_2757451_-|DUF3188-domain-containing-protein
MKIVNALFLISIGLIIIMFSPSYGKDGMASVPLLVTGLAVVLIGCVFIVLKIRKDKKEKN
>NZ_CP011397.1|WP_045597920.1|2757453_2757675_-|hypothetical-protein
MIILNCPMKRDYITELLETYDKDGVTFKKIDEKGMKLTFETNFEDEEKAAKIAKETIKATEIGSVLYFQVSVG
>NZ_CP011397.1|WP_014602267.1|2757809_2759174_-|PTS-sugar-transporter-subunit-IIC
MNGLTAFLEKYFVPVAAKIGSQKHLVALRDAFISTMPITMAGSIAVLLNAFFRDFPTDWGWTGFVEAMQPLIDINGYVYNGTLAIVSIIFAFSLGYNLSKAYEVDRLAGGLVSLAAFVMNLTVTVSLDAVKAAIAASNANFDIATLPKEFAGIYGFFSLSQVNGTGLFTAMIFGFISTIIYAKLMRRNIIIKMPDSVPPAVSKAFAAIIPALVALYVVGIIDWAFFKITNMDVITWISKTIQEPLLSLSQGYGAVLLVTFLVQLLWFFGIHGPNVLAPVLESLWGTAQLQNISAAQEGAKLPFEWVRGSFDAYVWMGGSGGTLVLIIALLMFSKRADARTVAKLSLAPGIFNINEPIMFGLPIVLNTIYLIPFLIAPMVMVTIAYFATTLGIVGPVKIAVVWVMPPLLNSFLATGGDWMAPVISLINMVVAFLIWVPFVITANRVGVPEEEMKA
>NZ_CP011397.1|WP_009931588.1|2759616_2759772_+|hypothetical-protein
MAVKRDMPEESKNSKVVKKEHFSIVFPDDIKEPATVEEKKKQDAEKKTDDN
>NZ_CP011397.1|WP_009925039.1|2760343_2760985_-|hypothetical-protein
MQQLKSKKKWLPALIVAVFVGIIVILAIMFGFFQRQEVFDKYEVAYEIDGKLYEVFPISATDIGVDKKSKDKNLYFRVNSYYNIDYLFRLAYKQYEINEPSTNKYYSGLIDYSVADNAYVTQKDVYITNNESYATYDFFDKNGKKIYTYNPEETSNDDYIVRIKPTILQGYEKSDIGSYDDYLNITALFKDKLGMDVNVRIDEDKEMVIFSIK
>NZ_CP011397.1|WP_003732087.1|2761682_2763197_-|gluconokinase
MTSKPYIMGVDIGTSSTKAVLFNQRGEVIFRQATHYELITDETGKAEESPTEIFDAVLTSIQAVMKNINTEELAGISFSSAMHSLIMVGSNGELLTECITWADGRSSETLEKVKRDNYLFQLYEATGTPIHPMSPFAKICWLKEEKPTLFKRTEKFVDIKSYILYRLFGVWVMDESLASGTGLYNIMEHDWEFEAMEIVKLTPDFLPKVVPETYQLAGVKKEYAELMGIPENLPFIIGGSDGALANIGIQATGQNDVTITVGTSGAVRKLTDQFQIDSRGRTFCYGAGDGYFIAGGAVNNGGKVVEWGLQQFGSEAEISRRDFASFIAKIEEVPPGAAGLLFQPYLLGERAPFWTNDIRGGFVGLTINHTKAHFIRAILEGVAFNLAEVYEAVSAPDDIIYVTGGISAHDAWCKLLADILNREIRVPHTIEGSSLGAAIIGMRSLGILKDLNLKHTLPIKAVYHPSENVLKYAELRLIFKQVTTQLMSSYSQLNSWQKKFDINS
>NZ_CP011397.1|WP_003722073.1|2763312_2764251_-|GW-domain-containing-glycosaminoglycan-binding-protein
MKKLLSGLIVVLMVSLLGHSFNAEAASYEKIIYDKAVNLKGVVNQSKRNDGINSKMYKTSSSVKYLGSAKKYDKKTLIITREGKTARAKWYYCKLGNTTIGWIDSRAFTNIGKPTIADTVPALWNSKKAIITTKPKSTTATTYFFQKNSAGNWYEVRHFTSHIGKWGFDPKFSEKSSGTPVGVYRTGIAFGQKGNPGTKLTFRAITNRSYWISNSNDKAYNTWQERNSSSSADEKMKIPQYKYGMEVKYNAKRVKGKGSAVFYHVDSPKYNYTLGCVAQSEANTKEVLKFADKNTLIVLGEESRIKTFYGIN
>NZ_CP011397.1|WP_003722074.1|2764293_2765241_-|LPXTG-cell-wall-anchor-domain-containing-protein
MKKFHGLILTALVTCLIIPFSLAASAETNENGNNSTPTEEKTTDTTENIITEEKTEPAEPTKDTTVTPPQKSKVQTTIDITDSQEVYSYEQNSKIDLKDFTATLTDYTDTKLTNYRLAANSKLSTAQTGIQEVTLLGDNEDGKTTAVKLNYLVKEKTAQLTITDMNFDLETKIFTGKTKPFASVYMSSPADENFGEGTTTADKDGYFYAEWATTPKQITAYAFDESGNYSEEVTYQVPAKKQNEAVVTAPDKVKKIETKNAVKSATTKPTDVTKVTKDDKTDLPSTGDKGTEWIFVVAGVIVILVAVLLLRKRKK
>NZ_CP011397.1|WP_045597924.1|2765382_2767122_-|thiol-reductant-ABC-exporter-subunit-CydC
MRKSSWIIPYIKENRGLFLLVIFLGTLTFASAGALMFTSGHLISKSSLMPESIMAVYISTVGVRAFGIMRSVSRYVERLSSHSLVLRILEKMRVRLYRLLEPQALLLKSRYKTGDILGLLAGDIEHLQNFYLTTMLPAIVSLVLYAGVVISLGAFSIPFAALFVLLIGLLVLVLPWVSLLYARGKNAYLKQGRNSLYQKFTDAVFGISDWKFSGREKTFISNYEKDEADMLRTENKQFHFVNWRDFFSQLVVGFMVIVMVYWSTAESRDGAFSGTMIAAFVLAIMALAEAFVPVSSAISDKSLYQDSLARLDKIEDPALPTFEEETKEIERINTENVVLKAENLTFAYDEKSPEILNGFDFTLQQGEKVAIIGRSGTGKSTFLKLVQGALLPTAGKVTMNDVEVEKLRPQIPELTSMLNQKAHLFSTTVLNNIRLGNQDASDEEVYEAAKKVQLHDFIMSMPDGYHTQMSEMGERFSGGERGRIALARILLQNTPIVILDEPTVGLDPITERDLLATIFETLADKSLIWVTHHLVGAEKMDRVLFLEEGKTLMEGPHAELMAEEPRYKRLYQLDRPIEL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP011397_1	1.4\|534498\|37\|NZ_CP011397\|PILER-CR,CRISPRCasFinder	534498-534534	37	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	218117-218153	1	0.973
NZ_CP011397_1	1.8\|534760\|34\|NZ_CP011397\|PILER-CR,CRISPRCasFinder	534760-534793	34	NZ_CP032628	Lactococcus sp. 1JSPR-7 plasmid unnamed1, complete sequence	36527-36560	11	0.676

1. spacer 1.4|534498|37|NZ_CP011397|PILER-CR,CRISPRCasFinder matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 1, identity: 0.973

agcgcaacaggtgccatatacaaactgcctttttttc	CRISPR spacer
agcgcaacaggggccatatacaaactgcctttttttc	Protospacer
*********** *************************

2. spacer 1.8|534760|34|NZ_CP011397|PILER-CR,CRISPRCasFinder matches to NZ_CP032628 (Lactococcus sp. 1JSPR-7 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.676

gttggtaggtttaaccaaagatgatcaccatgtc	CRISPR spacer
cttagtacgtttaaccaaagatgatgatggaaag	Protospacer
 **.*** ***************** *. . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

125905 : 132430

Listeria_phage(33.33%)

tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003721739.1\|125905_126358_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	4.0e-31	47.9
WP_003721740.1\|126363_126699_-	helix-turn-helix transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	4.0e-20	52.5
WP_003732219.1\|126915_127344_+	hypothetical protein	NA	NA	NA	NA
WP_003735200.1\|127355_127772_+	hypothetical protein	A8ASQ1	Listeria_phage	1.7e-20	38.6
WP_045598082.1\|128049_128439_+	DUF5072 family protein	NA	NA	NA	NA
WP_003721744.1\|128451_128964_+\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	62.7
WP_003721745.1\|129011_129314_+	hypothetical protein	NA	NA	NA	NA
WP_072217178.1\|129355_129760_+	phenylalanine racemase	NA	NA	NA	NA
WP_031665466.1\|129746_131615_+	membrane protein	A0A097PAU2	Streptococcus_pyogenes_phage	3.5e-20	45.8
WP_009911828.1\|131611_132430_+\|tail	phage tail family protein	A0A060AFE1	Staphylococcus_phage	7.2e-39	35.0

DBSCAN-SWA_2

1111101 : 1120059

Hokovirus(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003721506.1\|1111101_1111485_+	glycerol-3-phosphate cytidylyltransferase	A0A1V0SGE7	Hokovirus	1.4e-16	40.7
WP_003732709.1\|1111506_1112490_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	4.1e-12	34.6
WP_045599224.1\|1112504_1113518_+	glycosyltransferase	A0A1V0SAH6	Catovirus	2.3e-10	31.2
WP_003721509.1\|1113726_1115217_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	9.5e-114	49.7
WP_014601905.1\|1115228_1116053_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	1.3e-67	52.6
WP_003721511.1\|1116065_1116374_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_003721512.1\|1116433_1116838_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_014601906.1\|1116966_1118523_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	3.9e-17	28.1
WP_014601907.1\|1118655_1120059_+	SIR2 family protein	Q38324	Lactococcus_phage	1.2e-17	25.7

DBSCAN-SWA_3

1206735 : 1312478

119

Listeria_phage(70.59%)

tRNA,protease,integrase,tail,holin,capsid,terminase,portal

attL 1212123:1212140|attR 1276655:1276672

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003732769.1\|1206735_1209144_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_026749898.1\|1209304_1210006_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-33	35.8
WP_031644433.1\|1210019_1213430_+	FtsX-like permease family protein	NA	NA	NA	NA
1212123:1212140	attL	NA	NA	NA	NA
WP_003721623.1\|1213527_1213980_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_031644434.1\|1213995_1217196_+	MMPL family transporter	NA	NA	NA	NA
WP_003721625.1\|1217302_1217977_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	1.7e-49	47.7
WP_072215733.1\|1218013_1218940_-	ribonuclease HIII	NA	NA	NA	NA
WP_003740576.1\|1219093_1219357_+	cell division protein ZapA	NA	NA	NA	NA
WP_003723849.1\|1219356_1219899_+	CvpA family protein	NA	NA	NA	NA
WP_010989712.1\|1219991_1221704_+	DNA polymerase/3'-5' exonuclease PolX	A0A2H4UV14	Bodo_saltans_virus	5.1e-18	24.8
WP_010989713.1\|1221726_1224084_+	endonuclease MutS2	Q94M10	Lactobacillus_phage	1.0e-21	50.4
WP_003723853.1\|1224164_1224476_+	thioredoxin	A0A1X9I9P5	Staphylococcus_phage	5.4e-19	39.6
WP_003732777.1\|1224551_1226363_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_003732778.1\|1226551_1227766_+	aspartate kinase	NA	NA	NA	NA
WP_003733801.1\|1227821_1228316_-	YslB family protein	NA	NA	NA	NA
WP_003723856.1\|1228463_1229264_+	glutamate racemase	NA	NA	NA	NA
WP_003732780.1\|1229276_1230023_+	ribonuclease PH	NA	NA	NA	NA
WP_012581486.1\|1230026_1230638_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_012951515.1\|1230674_1231199_+	metallophosphoesterase	NA	NA	NA	NA
WP_026749902.1\|1231484_1232639_-\|integrase	site-specific integrase	A8ATC7	Listeria_phage	4.1e-213	97.1
WP_012951517.1\|1232782_1233439_-	DUF4352 domain-containing protein	NA	NA	NA	NA
WP_026749903.1\|1233490_1233943_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	8.5e-82	96.0
WP_026749904.1\|1233959_1234283_-	helix-turn-helix transcriptional regulator	A0A059T6G1	Listeria_phage	8.5e-36	71.0
WP_009929535.1\|1235087_1235411_+	hypothetical protein	NA	NA	NA	NA
WP_009929536.1\|1235425_1235629_+	helix-turn-helix transcriptional regulator	A0A059T5F8	Listeria_phage	3.1e-28	100.0
WP_015987310.1\|1235630_1235873_+	hypothetical protein	A8ATD2	Listeria_phage	1.4e-43	100.0
WP_009929539.1\|1235875_1236061_+	hypothetical protein	A0A059T7Z3	Listeria_phage	1.7e-28	96.7
WP_009931096.1\|1236295_1236448_+	hypothetical protein	A0A059T7S2	Listeria_phage	3.4e-19	98.0
WP_026749905.1\|1236584_1236839_+	hypothetical protein	A0A059T6G3	Listeria_phage	4.3e-35	91.5
WP_031664911.1\|1236856_1237834_+	DNA cytosine methyltransferase	H7BVD3	unidentified_phage	9.2e-49	37.5
WP_031664910.1\|1237830_1238424_+	DUF1642 domain-containing protein	A8ATD8	Listeria_phage	3.1e-60	61.7
WP_031664908.1\|1238426_1238870_+	hypothetical protein	NA	NA	NA	NA
WP_014929526.1\|1238866_1239013_+	hypothetical protein	A8ATZ0	Listeria_phage	1.7e-20	100.0
WP_031664906.1\|1239250_1239784_+	pentapeptide repeat-containing protein	A0A060AFJ6	Listeria_phage	2.2e-44	85.2
WP_031664904.1\|1239887_1240103_+	hypothetical protein	NA	NA	NA	NA
WP_003731703.1\|1240099_1240276_+	hypothetical protein	A0A076G7F4	Listeria_phage	1.9e-21	87.9
WP_014930899.1\|1240665_1240893_+	DUF3850 domain-containing protein	A0A059T7N3	Listeria_phage	4.6e-28	84.0
WP_031664899.1\|1241208_1241424_+	hypothetical protein	A0A059T7T1	Listeria_phage	2.8e-27	93.7
WP_031664897.1\|1241473_1242034_-	hypothetical protein	NA	NA	NA	NA
WP_009933642.1\|1242137_1242311_+	hypothetical protein	A0A059T5G3	Listeria_phage	5.2e-24	100.0
WP_014929534.1\|1242307_1242691_+	hypothetical protein	A0A059T6A2	Listeria_phage	5.5e-66	99.2
WP_033920325.1\|1242692_1243172_+	siphovirus Gp157 family protein	A0A059T803	Listeria_phage	1.2e-78	98.7
WP_003743935.1\|1243184_1243874_+	AAA family ATPase	A0A059T7T3	Listeria_phage	2.6e-130	100.0
WP_026749915.1\|1243937_1245194_+	DEAD/DEAH box helicase	Q8W5V9	Listeria_phage	5.4e-219	90.0
WP_026749916.1\|1245217_1245715_+	DUF669 domain-containing protein	A0A059T5G4	Listeria_phage	3.2e-50	57.3
WP_046810882.1\|1245734_1248008_+	DNA primase	R4IBW2	Listeria_phage	0.0e+00	74.3
WP_031664889.1\|1248148_1248469_+	VRR-NUC domain-containing protein	Q8W5V6	Listeria_phage	1.2e-53	97.2
WP_033920321.1\|1248465_1248735_+	hypothetical protein	W0GBM0	Listeria_phage	3.1e-15	72.2
WP_031664887.1\|1248845_1249376_+	DUF3310 domain-containing protein	A0A059T7T5	Listeria_phage	1.3e-73	77.3
WP_031664885.1\|1249376_1249802_+	DUF722 domain-containing protein	A0A059T6H4	Listeria_phage	1.8e-73	99.3
WP_031664882.1\|1250028_1250970_+	DUF4868 domain-containing protein	A0A1Q1PW39	Staphylococcus_phage	5.9e-45	33.0
WP_031664880.1\|1250995_1251607_+	hypothetical protein	A0A1Q1PW40	Staphylococcus_phage	6.0e-22	42.8
WP_031664879.1\|1251636_1251963_+	hypothetical protein	A0A059T5G5	Listeria_phage	9.5e-51	93.5
WP_031664877.1\|1251962_1252277_+	HNH endonuclease	A8ATF8	Listeria_phage	3.2e-56	97.1
WP_012951543.1\|1252325_1252682_+\|terminase	P27 family phage terminase small subunit	A0A059T7Y1	Listeria_phage	2.0e-46	98.0
WP_026749921.1\|1252678_1254322_+\|terminase	terminase large subunit	A0A059T7Q8	Listeria_phage	0.0e+00	99.6
WP_009917707.1\|1254331_1254721_-	DUF2513 domain-containing protein	A0A1Q1PVT8	Staphylococcus_phage	3.7e-17	39.8
WP_026749922.1\|1254771_1255902_+\|portal	phage portal protein	A0A059T6F0	Listeria_phage	6.1e-214	99.2
WP_026749923.1\|1255898_1256696_+\|protease	Clp protease ClpP	A0A059T5F2	Listeria_phage	6.2e-144	99.6
WP_014930913.1\|1256722_1257874_+\|capsid	phage major capsid protein	A0A059T678	Listeria_phage	6.3e-214	100.0
WP_167620291.1\|1257880_1258051_+	hypothetical protein	A0A059T7Y2	Listeria_phage	2.4e-21	98.2
WP_014930914.1\|1258060_1258360_+	hypothetical protein	A0A059T7R0	Listeria_phage	5.3e-48	100.0
WP_025370587.1\|1258343_1258709_+	hypothetical protein	A0A059T6F2	Listeria_phage	2.4e-63	99.2
WP_026747164.1\|1258705_1259107_+	hypothetical protein	A8ATA2	Listeria_phage	5.2e-67	97.0
WP_026749924.1\|1259103_1259487_+	hypothetical protein	A0A059T681	Listeria_phage	2.1e-65	96.9
WP_025370590.1\|1259507_1260095_+\|tail	phage tail protein	A0A059T7Y4	Listeria_phage	1.3e-106	99.0
WP_025370591.1\|1260165_1260498_+	hypothetical protein	A0A059T7R2	Listeria_phage	8.7e-52	97.3
WP_009931626.1\|1260548_1260710_+	hypothetical protein	A0A059T6F4	Listeria_phage	4.3e-20	98.0
WP_026749925.1\|1260713_1265624_+\|tail	phage tail tape measure protein	A0A059T5F4	Listeria_phage	0.0e+00	96.0
WP_026749926.1\|1265620_1267270_+\|tail	phage tail family protein	A0A059T682	Listeria_phage	0.0e+00	99.3
WP_026749927.1\|1267282_1269577_+\|tail	phage tail protein	A0A059T7Y6	Listeria_phage	0.0e+00	99.2
WP_026749928.1\|1269566_1270661_+	hypothetical protein	A0A059T7R4	Listeria_phage	1.9e-175	84.9
WP_003733957.1\|1270711_1271017_+	hypothetical protein	A0A059T5E6	Listeria_phage	1.8e-43	100.0
WP_014929558.1\|1271016_1271298_+\|holin	phage holin	A8ATW3	Listeria_phage	6.7e-45	98.9
WP_045599354.1\|1271297_1272149_+	N-acetylmuramoyl-L-alanine amidase	P89923	Bacillus_phage	8.0e-33	50.6
WP_026749929.1\|1272753_1273263_+	hypothetical protein	NA	NA	NA	NA
WP_026749930.1\|1273658_1273844_-	hypothetical protein	A0A059T7Z0	Listeria_phage	5.4e-19	89.7
WP_031664868.1\|1274284_1274518_+	hypothetical protein	A8ATC5	Listeria_phage	1.1e-32	89.6
WP_045599352.1\|1275166_1276525_+	DUF1254 domain-containing protein	NA	NA	NA	NA
WP_003729706.1\|1276566_1277160_-	YdeI/OmpD-associated family protein	NA	NA	NA	NA
1276655:1276672	attR	NA	NA	NA	NA
WP_012581425.1\|1277296_1277704_-	VOC family protein	NA	NA	NA	NA
WP_031664862.1\|1277868_1278468_+	histidine phosphatase family protein	A0A1X9IGJ2	Lactococcus_phage	3.8e-29	40.5
WP_003723543.1\|1278500_1278761_-	hypothetical protein	NA	NA	NA	NA
WP_012581424.1\|1278884_1280297_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.2e-51	32.1
WP_003730329.1\|1280321_1280585_+	DUF3116 family protein	NA	NA	NA	NA
WP_031664861.1\|1280750_1281227_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA
WP_003730327.1\|1281263_1281509_-	hypothetical protein	NA	NA	NA	NA
WP_012581422.1\|1281505_1282711_-	MFS transporter	NA	NA	NA	NA
WP_031664859.1\|1282915_1283575_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_003726053.1\|1283614_1283809_-	hypothetical protein	NA	NA	NA	NA
WP_003730323.1\|1283875_1284724_-	YitT family protein	NA	NA	NA	NA
WP_003723553.1\|1285054_1285192_-	hypothetical protein	NA	NA	NA	NA
WP_003732787.1\|1285342_1286056_+	trehalose operon repressor	NA	NA	NA	NA
WP_031664857.1\|1286086_1287733_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA
WP_023552381.1\|1287751_1289236_-	PTS system trehalose-specific EIIBC component	NA	NA	NA	NA
WP_014601949.1\|1289352_1289814_+	NUDIX hydrolase	NA	NA	NA	NA
WP_003726717.1\|1289852_1290317_-	hypothetical protein	NA	NA	NA	NA
WP_014601950.1\|1290505_1291420_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_014601951.1\|1291444_1292692_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	4.2e-107	52.0
WP_014601952.1\|1292675_1293506_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-45	42.0
WP_031664854.1\|1293653_1294793_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_003723563.1\|1294873_1295269_-	helix-turn-helix transcriptional regulator	A9D9J6	Lactobacillus_prophage	1.3e-14	57.4
WP_003727524.1\|1295419_1295635_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010989719.1\|1295753_1296287_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_003732795.1\|1296304_1296970_+	hypothetical protein	NA	NA	NA	NA
WP_003732796.1\|1297231_1298170_+	hypothetical protein	NA	NA	NA	NA
WP_003723884.1\|1298284_1299568_+	trigger factor	NA	NA	NA	NA
WP_003723886.1\|1299752_1301012_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.4e-145	63.2
WP_003723887.1\|1301130_1301697_+	type I signal peptidase SipX	NA	NA	NA	NA
WP_003723888.1\|1301731_1302301_+	type I signal peptidase SipY	NA	NA	NA	NA
WP_003723889.1\|1302402_1302945_+	type I signal peptidase SipZ	NA	NA	NA	NA
WP_003723890.1\|1302954_1303818_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_023548886.1\|1303814_1304600_+	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	3.0e-26	39.2
WP_003723892.1\|1304733_1305594_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_009924617.1\|1305864_1307943_+	type I DNA topoisomerase	A0A1V0SB35	Catovirus	1.4e-107	37.7
WP_031664850.1\|1308005_1309310_+\|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	NA	NA	NA	NA
WP_009911635.1\|1309592_1310495_+	tyrosine recombinase XerC	A0A097EYL9	Mycobacterium_phage	1.2e-13	28.6
WP_003724001.1\|1310515_1311055_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_010989722.1\|1311068_1312478_+\|protease	ATP-dependent protease ATPase subunit HslU	W6AS21	Erwinia_phage	4.9e-43	27.7

DBSCAN-SWA_4

1844778 : 1853064

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033921148.1\|1844778_1845345_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	7.0e-25	35.9
WP_031665593.1\|1845341_1846391_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	9.2e-63	44.4
WP_003722245.1\|1846409_1847837_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-53	34.6
WP_039384720.1\|1847821_1850041_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	6.5e-159	41.1
WP_003733240.1\|1850033_1850717_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_003722248.1\|1850720_1850966_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_014931516.1\|1850977_1851691_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	8.8e-41	37.8
WP_045598711.1\|1851771_1853064_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	2.5e-17	33.0

DBSCAN-SWA_5

2512368 : 2520212

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003722604.1\|2512368_2513340_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4
WP_003722605.1\|2513347_2514316_-	YvcK family protein	A1IMD5	Streptococcus_phage	6.7e-68	43.3
WP_003722606.1\|2514317_2515193_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.9e-08	29.7
WP_031645160.1\|2515300_2517031_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	3.3e-174	53.3
WP_003734087.1\|2517072_2518134_-	galactose mutarotase	NA	NA	NA	NA
WP_014601137.1\|2518150_2519134_-	UDP-glucose 4-epimerase GalE	A0A1V0SG19	Hokovirus	1.6e-48	37.2
WP_003722610.1\|2519252_2520212_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.0e-88	53.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011397

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection