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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011254 Serratia fonticola strain DSM 4576 chromosome, complete genome 7 crisprs csa3,RT,cas14j,cas3,DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f 0 26 5 0

Results visualization

1. NZ_CP011254
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011254_1 596241-596347 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011254_2 2028369-2028451 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011254_3 4410605-4413153 TypeI-F I-F
42 spacers
cas1,cas3f,cas8f,cas5f,cas7f,cas6f

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011254_4 4421653-4422341 TypeI-F I-F
11 spacers
cas6f,cas7f,cas5f,cas8f,cas3f,cas1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011254_5 4424531-4425327 TypeI-F I-F
13 spacers
cas6f,cas7f,cas5f,cas8f,cas3f,cas1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011254_6 4476842-4476932 TypeV NA
1 spacers
cas14j

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011254_7 5792016-5792130 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP011254_3 3.5|4410873|32|NZ_CP011254|CRISPRCasFinder,CRT 4410873-4410904 32 MT843275 Serratia phage vB_SspM_BZS1, complete genome 37741-37772 0 1.0
NZ_CP011254_3 3.16|4411533|32|NZ_CP011254|CRISPRCasFinder,CRT 4411533-4411564 32 MN855654 Myoviridae sp. isolate 499, complete genome 3154-3185 5 0.844
NZ_CP011254_2 2.1|2028397|27|NZ_CP011254|CRISPRCasFinder 2028397-2028423 27 NZ_CP030933 Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence 67997-68023 6 0.778
NZ_CP011254_3 3.8|4411053|32|NZ_CP011254|CRISPRCasFinder,CRT 4411053-4411084 32 NC_011802 Salmonella enterica bacteriophage SE1, complete genome 13405-13436 6 0.812
NZ_CP011254_3 3.8|4411053|32|NZ_CP011254|CRISPRCasFinder,CRT 4411053-4411084 32 CP051272 Salmonella phage SW-70, complete genome 37461-37492 6 0.812
NZ_CP011254_3 3.8|4411053|32|NZ_CP011254|CRISPRCasFinder,CRT 4411053-4411084 32 CP051278 Salmonella phage ST-87, complete genome 24214-24245 6 0.812
NZ_CP011254_3 3.8|4411053|32|NZ_CP011254|CRISPRCasFinder,CRT 4411053-4411084 32 CP051288 Salmonella phage ST-29, complete genome 37058-37089 6 0.812
NZ_CP011254_3 3.8|4411053|32|NZ_CP011254|CRISPRCasFinder,CRT 4411053-4411084 32 CP051285 Salmonella phage ST-32, complete genome 30150-30181 6 0.812
NZ_CP011254_3 3.8|4411053|32|NZ_CP011254|CRISPRCasFinder,CRT 4411053-4411084 32 NC_014900 Salmonella phage ST160, complete genome 13473-13504 6 0.812
NZ_CP011254_3 3.20|4411773|32|NZ_CP011254|CRISPRCasFinder,CRT 4411773-4411804 32 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 142521-142552 6 0.812
NZ_CP011254_3 3.36|4412734|32|NZ_CP011254|CRISPRCasFinder,CRT,PILER-CR 4412734-4412765 32 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 142521-142552 6 0.812
NZ_CP011254_3 3.4|4410813|32|NZ_CP011254|CRISPRCasFinder,CRT 4410813-4410844 32 MK448233 Klebsiella phage ST11-VIM1phi8.1, complete genome 37939-37970 7 0.781
NZ_CP011254_3 3.4|4410813|32|NZ_CP011254|CRISPRCasFinder,CRT 4410813-4410844 32 MK448235 Klebsiella phage ST512-KPC3phi13.1, complete genome 37939-37970 7 0.781
NZ_CP011254_3 3.5|4410873|32|NZ_CP011254|CRISPRCasFinder,CRT 4410873-4410904 32 CP003954 Rhodococcus opacus PD630 plasmid 5, complete sequence 23978-24009 7 0.781
NZ_CP011254_3 3.13|4411353|32|NZ_CP011254|CRISPRCasFinder,CRT 4411353-4411384 32 NC_008043 Ruegeria sp. TM1040 megaplasmid, complete sequence 398967-398998 7 0.781
NZ_CP011254_3 3.14|4411413|32|NZ_CP011254|CRISPRCasFinder,CRT 4411413-4411444 32 NZ_CP035002 Rhizobium acidisoli strain FH23 plasmid pRapFH23d, complete sequence 295533-295564 7 0.781
NZ_CP011254_3 3.16|4411533|32|NZ_CP011254|CRISPRCasFinder,CRT 4411533-4411564 32 NZ_CP013054 Sinorhizobium americanum CCGM7 plasmid C, complete sequence 313993-314024 7 0.781
NZ_CP011254_3 3.25|4412073|33|NZ_CP011254|CRISPRCasFinder,CRT,PILER-CR 4412073-4412105 33 NZ_CP025017 Rhizobium leguminosarum strain Norway plasmid pRLN5, complete sequence 109816-109848 7 0.788
NZ_CP011254_3 3.26|4412134|32|NZ_CP011254|CRISPRCasFinder,CRT,PILER-CR 4412134-4412165 32 NC_010580 Beijerinckia indica subsp. indica ATCC 9039 plasmid pBIND01, complete sequence 132050-132081 7 0.781
NZ_CP011254_3 3.33|4412554|32|NZ_CP011254|CRISPRCasFinder,CRT,PILER-CR 4412554-4412585 32 MN234234 Arthrobacter phage Lymara, complete genome 11616-11647 7 0.781
NZ_CP011254_5 5.13|4425278|32|NZ_CP011254|PILER-CR 4425278-4425309 32 MG592468 Vibrio phage 1.094.O._10N.286.55.E12, partial genome 42680-42711 7 0.781
NZ_CP011254_5 5.13|4425278|32|NZ_CP011254|PILER-CR 4425278-4425309 32 MG592451 Vibrio phage 1.075.O._10N.286.55.B10, partial genome 42775-42806 7 0.781
NZ_CP011254_5 5.13|4425278|32|NZ_CP011254|PILER-CR 4425278-4425309 32 MG592467 Vibrio phage 1.093.O._10N.286.55.E10, partial genome 42782-42813 7 0.781
NZ_CP011254_5 5.13|4425278|32|NZ_CP011254|PILER-CR 4425278-4425309 32 MG592401 Vibrio phage 1.017.O._10N.286.55.C11, partial genome 42717-42748 7 0.781
NZ_CP011254_5 5.17|4425268|32|NZ_CP011254|CRISPRCasFinder,CRT 4425268-4425299 32 MG592468 Vibrio phage 1.094.O._10N.286.55.E12, partial genome 42680-42711 7 0.781
NZ_CP011254_5 5.17|4425268|32|NZ_CP011254|CRISPRCasFinder,CRT 4425268-4425299 32 MG592451 Vibrio phage 1.075.O._10N.286.55.B10, partial genome 42775-42806 7 0.781
NZ_CP011254_5 5.17|4425268|32|NZ_CP011254|CRISPRCasFinder,CRT 4425268-4425299 32 MG592467 Vibrio phage 1.093.O._10N.286.55.E10, partial genome 42782-42813 7 0.781
NZ_CP011254_5 5.17|4425268|32|NZ_CP011254|CRISPRCasFinder,CRT 4425268-4425299 32 MG592401 Vibrio phage 1.017.O._10N.286.55.C11, partial genome 42717-42748 7 0.781
NZ_CP011254_3 3.5|4410873|32|NZ_CP011254|CRISPRCasFinder,CRT 4410873-4410904 32 MN602268 Bacteriophage DSS3_MAL1, complete genome 34532-34563 8 0.75
NZ_CP011254_3 3.14|4411413|32|NZ_CP011254|CRISPRCasFinder,CRT 4411413-4411444 32 NZ_CP015356 Bacillus thuringiensis strain MYBT18246 plasmid p101287, complete sequence 99815-99846 8 0.75
NZ_CP011254_3 3.19|4411713|32|NZ_CP011254|CRISPRCasFinder,CRT 4411713-4411744 32 NZ_CP025432 Paracoccus zhejiangensis strain J6 plasmid pPZ02, complete sequence 119243-119274 8 0.75
NZ_CP011254_3 3.20|4411773|32|NZ_CP011254|CRISPRCasFinder,CRT 4411773-4411804 32 MK972713 Salmonella phage SW5, complete genome 5172-5203 8 0.75
NZ_CP011254_3 3.20|4411773|32|NZ_CP011254|CRISPRCasFinder,CRT 4411773-4411804 32 MK972714 Salmonella phage SW3, complete genome 5394-5425 8 0.75
NZ_CP011254_3 3.20|4411773|32|NZ_CP011254|CRISPRCasFinder,CRT 4411773-4411804 32 NC_049460 Salmonella phage SI7, complete genome 25651-25682 8 0.75
NZ_CP011254_3 3.31|4412434|32|NZ_CP011254|CRISPRCasFinder,CRT,PILER-CR 4412434-4412465 32 MK552105 Escherichia phage Jahat_MG145, complete genome 29772-29803 8 0.75
NZ_CP011254_3 3.31|4412434|32|NZ_CP011254|CRISPRCasFinder,CRT,PILER-CR 4412434-4412465 32 NZ_CP025013 Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence 654503-654534 8 0.75
NZ_CP011254_3 3.36|4412734|32|NZ_CP011254|CRISPRCasFinder,CRT,PILER-CR 4412734-4412765 32 MK972713 Salmonella phage SW5, complete genome 5172-5203 8 0.75
NZ_CP011254_3 3.36|4412734|32|NZ_CP011254|CRISPRCasFinder,CRT,PILER-CR 4412734-4412765 32 MK972714 Salmonella phage SW3, complete genome 5394-5425 8 0.75
NZ_CP011254_3 3.36|4412734|32|NZ_CP011254|CRISPRCasFinder,CRT,PILER-CR 4412734-4412765 32 NC_049460 Salmonella phage SI7, complete genome 25651-25682 8 0.75
NZ_CP011254_4 4.5|4421922|32|NZ_CP011254|PILER-CR,CRISPRCasFinder,CRT 4421922-4421953 32 MN694404 Marine virus AFVG_250M623, complete genome 27732-27763 8 0.75
NZ_CP011254_4 4.5|4421922|32|NZ_CP011254|PILER-CR,CRISPRCasFinder,CRT 4421922-4421953 32 KY549659 Pectobacterium phage vB_PatP_CB4, complete genome 3598-3629 8 0.75
NZ_CP011254_4 4.5|4421922|32|NZ_CP011254|PILER-CR,CRISPRCasFinder,CRT 4421922-4421953 32 NC_048704 Pectobacterium phage Nepra, complete genome 70224-70255 8 0.75
NZ_CP011254_4 4.5|4421922|32|NZ_CP011254|PILER-CR,CRISPRCasFinder,CRT 4421922-4421953 32 KY514265 Pectobacterium phage vB_PatP_CB3, complete genome 3651-3682 8 0.75
NZ_CP011254_3 3.2|4410693|32|NZ_CP011254|CRISPRCasFinder,CRT 4410693-4410724 32 DQ500118 Rhizobium phage 16-3, complete genome 23135-23166 9 0.719
NZ_CP011254_3 3.5|4410873|32|NZ_CP011254|CRISPRCasFinder,CRT 4410873-4410904 32 NC_012853 Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132503, complete sequence 138528-138559 9 0.719
NZ_CP011254_3 3.14|4411413|32|NZ_CP011254|CRISPRCasFinder,CRT 4411413-4411444 32 NZ_CP012644 Rufibacter tibetensis strain 1351 plasmid 1, complete sequence 180814-180845 9 0.719
NZ_CP011254_3 3.22|4411893|32|NZ_CP011254|CRISPRCasFinder,CRT 4411893-4411924 32 MT647606 Pelagibacter phage Mosig EXVC030M, partial genome 29936-29967 9 0.719
NZ_CP011254_3 3.41|4413034|32|NZ_CP011254|CRISPRCasFinder,CRT,PILER-CR 4413034-4413065 32 MH590589 Streptomyces phage SparkleGoddess, complete genome 103431-103462 9 0.719
NZ_CP011254_4 4.4|4421862|32|NZ_CP011254|PILER-CR,CRISPRCasFinder,CRT 4421862-4421893 32 MK448826 Streptococcus phage Javan645, complete genome 8737-8768 9 0.719
NZ_CP011254_4 4.4|4421862|32|NZ_CP011254|PILER-CR,CRISPRCasFinder,CRT 4421862-4421893 32 MK449001 Streptococcus phage Javan640, complete genome 8737-8768 9 0.719
NZ_CP011254_5 5.5|4424799|32|NZ_CP011254|PILER-CR,CRISPRCasFinder,CRT 4424799-4424830 32 NC_049442 Arthrobacter phage KBurrousTX, complete genome 47709-47740 9 0.719
NZ_CP011254_5 5.10|4425099|31|NZ_CP011254|PILER-CR 4425099-4425129 31 MH598799 Pelagibacter phage HTVC025P, complete genome 22009-22039 9 0.71
NZ_CP011254_5 5.11|4425158|32|NZ_CP011254|PILER-CR 4425158-4425189 32 NZ_CP045074 Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence 205685-205716 9 0.719
NZ_CP011254_5 5.15|4425148|32|NZ_CP011254|CRISPRCasFinder,CRT 4425148-4425179 32 NZ_CP045074 Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence 205685-205716 9 0.719
NZ_CP011254_3 3.8|4411053|32|NZ_CP011254|CRISPRCasFinder,CRT 4411053-4411084 32 NZ_CP039495 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000669 plasmid pCFSAN000669_2, complete sequence 22442-22473 10 0.688
NZ_CP011254_3 3.8|4411053|32|NZ_CP011254|CRISPRCasFinder,CRT 4411053-4411084 32 MH370387 Salmonella phage S149, complete genome 13858-13889 10 0.688
NZ_CP011254_3 3.8|4411053|32|NZ_CP011254|CRISPRCasFinder,CRT 4411053-4411084 32 MG407615 Salmonella phage Bp96115, partial genome 3777-3808 10 0.688
NZ_CP011254_3 3.8|4411053|32|NZ_CP011254|CRISPRCasFinder,CRT 4411053-4411084 32 NC_042346 Salmonella virus BTP1 genome assembly, chromosome: BTP1 29495-29526 10 0.688
NZ_CP011254_3 3.8|4411053|32|NZ_CP011254|CRISPRCasFinder,CRT 4411053-4411084 32 NC_005841 Enterobacteria phage ST104 DNA, complete genome 13859-13890 10 0.688
NZ_CP011254_3 3.21|4411833|32|NZ_CP011254|CRISPRCasFinder,CRT 4411833-4411864 32 NZ_CP035511 Haematobacter massiliensis strain OT1 plasmid pOT1-1, complete sequence 9874-9905 10 0.688
NZ_CP011254_5 5.11|4425158|32|NZ_CP011254|PILER-CR 4425158-4425189 32 NC_028850 Yersinia phage vB_YenP_ISAO8, complete genome 13815-13846 10 0.688
NZ_CP011254_5 5.15|4425148|32|NZ_CP011254|CRISPRCasFinder,CRT 4425148-4425179 32 NC_028850 Yersinia phage vB_YenP_ISAO8, complete genome 13815-13846 10 0.688
NZ_CP011254_3 3.41|4413034|32|NZ_CP011254|CRISPRCasFinder,CRT,PILER-CR 4413034-4413065 32 NC_047960 Enterobacteria phage vB_EcoS_IME347, complete genome 44957-44988 11 0.656

1. spacer 3.5|4410873|32|NZ_CP011254|CRISPRCasFinder,CRT matches to MT843275 (Serratia phage vB_SspM_BZS1, complete genome) position: , mismatch: 0, identity: 1.0

ttgatgctcatagcctgcgccatcaggttcat	CRISPR spacer
ttgatgctcatagcctgcgccatcaggttcat	Protospacer
********************************

2. spacer 3.16|4411533|32|NZ_CP011254|CRISPRCasFinder,CRT matches to MN855654 (Myoviridae sp. isolate 499, complete genome) position: , mismatch: 5, identity: 0.844

tcttcctgcttgaaatttctgcgttttcgtgc	CRISPR spacer
tcgttttgattgatatttctgcgttttcgtgc	Protospacer
** *..** **** ******************

3. spacer 2.1|2028397|27|NZ_CP011254|CRISPRCasFinder matches to NZ_CP030933 (Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence) position: , mismatch: 6, identity: 0.778

ccccggtgttgcggtcgggtgctgtgg	CRISPR spacer
gatcgatgttgctgtcgggtgctgtga	Protospacer
  .**.****** *************.

4. spacer 3.8|4411053|32|NZ_CP011254|CRISPRCasFinder,CRT matches to NC_011802 (Salmonella enterica bacteriophage SE1, complete genome) position: , mismatch: 6, identity: 0.812

cttctcgtttgataacgccagcactcagcgcg-	CRISPR spacer
attctcgattgataacgccaggaccc-gcgctt	Protospacer
 ****** ************* **.* ****  

5. spacer 3.8|4411053|32|NZ_CP011254|CRISPRCasFinder,CRT matches to CP051272 (Salmonella phage SW-70, complete genome) position: , mismatch: 6, identity: 0.812

cttctcgtttgataacgccagcactcagcgcg-	CRISPR spacer
attctcgattgataacgccaggaccc-gcgctt	Protospacer
 ****** ************* **.* ****  

6. spacer 3.8|4411053|32|NZ_CP011254|CRISPRCasFinder,CRT matches to CP051278 (Salmonella phage ST-87, complete genome) position: , mismatch: 6, identity: 0.812

cttctcgtttgataacgccagcactcagcgcg-	CRISPR spacer
attctcgattgataacgccaggaccc-gcgctt	Protospacer
 ****** ************* **.* ****  

7. spacer 3.8|4411053|32|NZ_CP011254|CRISPRCasFinder,CRT matches to CP051288 (Salmonella phage ST-29, complete genome) position: , mismatch: 6, identity: 0.812

cttctcgtttgataacgccagcactcagcgcg-	CRISPR spacer
attctcgattgataacgccaggaccc-gcgctt	Protospacer
 ****** ************* **.* ****  

8. spacer 3.8|4411053|32|NZ_CP011254|CRISPRCasFinder,CRT matches to CP051285 (Salmonella phage ST-32, complete genome) position: , mismatch: 6, identity: 0.812

cttctcgtttgataacgccagcactcagcgcg-	CRISPR spacer
attctcgattgataacgccaggaccc-gcgctt	Protospacer
 ****** ************* **.* ****  

9. spacer 3.8|4411053|32|NZ_CP011254|CRISPRCasFinder,CRT matches to NC_014900 (Salmonella phage ST160, complete genome) position: , mismatch: 6, identity: 0.812

cttctcgtttgataacgccagcactcagcgcg-	CRISPR spacer
attctcgattgataacgccaggaccc-gcgctt	Protospacer
 ****** ************* **.* ****  

10. spacer 3.20|4411773|32|NZ_CP011254|CRISPRCasFinder,CRT matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 6, identity: 0.812

tcggcaaccctatcaaccagcaggacgcggcc	CRISPR spacer
ttgttaacgctatcaaccagcaggacgctacc	Protospacer
*.* .*** ******************* .**

11. spacer 3.36|4412734|32|NZ_CP011254|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 6, identity: 0.812

tcggcaaccctatcaaccagcaggacgcggcc	CRISPR spacer
ttgttaacgctatcaaccagcaggacgctacc	Protospacer
*.* .*** ******************* .**

12. spacer 3.4|4410813|32|NZ_CP011254|CRISPRCasFinder,CRT matches to MK448233 (Klebsiella phage ST11-VIM1phi8.1, complete genome) position: , mismatch: 7, identity: 0.781

agttcagcggctcgctaacctgcagcgtgatc---	CRISPR spacer
agttcagcggcttgctaac---cagcacgctcagg	Protospacer
************.******   ****..* **   

13. spacer 3.4|4410813|32|NZ_CP011254|CRISPRCasFinder,CRT matches to MK448235 (Klebsiella phage ST512-KPC3phi13.1, complete genome) position: , mismatch: 7, identity: 0.781

agttcagcggctcgctaacctgcagcgtgatc---	CRISPR spacer
agttcagcggcttgctaac---cagcacgctcagg	Protospacer
************.******   ****..* **   

14. spacer 3.5|4410873|32|NZ_CP011254|CRISPRCasFinder,CRT matches to CP003954 (Rhodococcus opacus PD630 plasmid 5, complete sequence) position: , mismatch: 7, identity: 0.781

ttgat--gctcatagcctgcgccatcaggttcat	CRISPR spacer
--gaccggttcatcgccttcgccatcaggttcgt	Protospacer
  **.  *.**** **** *************.*

15. spacer 3.13|4411353|32|NZ_CP011254|CRISPRCasFinder,CRT matches to NC_008043 (Ruegeria sp. TM1040 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.781

tggtggtgaataatggcaatgtgcgcactaac-	CRISPR spacer
cggtggtgaataaaggaaatgtgcg-attggct	Protospacer
.************ ** ******** *.*..* 

16. spacer 3.14|4411413|32|NZ_CP011254|CRISPRCasFinder,CRT matches to NZ_CP035002 (Rhizobium acidisoli strain FH23 plasmid pRapFH23d, complete sequence) position: , mismatch: 7, identity: 0.781

ttcactggcttgcctgaatgcctgagcgatct	CRISPR spacer
ccctccggctcgcctgaatgcgtgagcgatcg	Protospacer
..* *.****.********** ********* 

17. spacer 3.16|4411533|32|NZ_CP011254|CRISPRCasFinder,CRT matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 7, identity: 0.781

tcttcctgcttgaaatttctgc----gttttcgtgc	CRISPR spacer
tcttcctgcttgcaattcctgcgggtgttctc----	Protospacer
************ ****.****    ***.**    

18. spacer 3.25|4412073|33|NZ_CP011254|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025017 (Rhizobium leguminosarum strain Norway plasmid pRLN5, complete sequence) position: , mismatch: 7, identity: 0.788

caaagggcaagatcatccacggccgcgctcgct	CRISPR spacer
cacgagtcaagatcgtccacggccgcgcccggt	Protospacer
** ..* *******.*************.** *

19. spacer 3.26|4412134|32|NZ_CP011254|CRISPRCasFinder,CRT,PILER-CR matches to NC_010580 (Beijerinckia indica subsp. indica ATCC 9039 plasmid pBIND01, complete sequence) position: , mismatch: 7, identity: 0.781

acatt-cctttggccgctgaatgaacatcactc	CRISPR spacer
-cgttaccttttgccgctgcatgaacatccccg	Protospacer
 *.** ***** ******* ********* *. 

20. spacer 3.33|4412554|32|NZ_CP011254|CRISPRCasFinder,CRT,PILER-CR matches to MN234234 (Arthrobacter phage Lymara, complete genome) position: , mismatch: 7, identity: 0.781

agttggccacacagttttttggtggcagccgc--	CRISPR spacer
cttttgccacaccgttttttggtggt--ccgcta	Protospacer
  ** ******* ************.  ****  

21. spacer 5.13|4425278|32|NZ_CP011254|PILER-CR matches to MG592468 (Vibrio phage 1.094.O._10N.286.55.E12, partial genome) position: , mismatch: 7, identity: 0.781

tcgcgtaacgttctgttttcagcatcggcctt	CRISPR spacer
tcgcgtaacgttctattttcagcttccaaatc	Protospacer
**************.******** ** .  *.

22. spacer 5.13|4425278|32|NZ_CP011254|PILER-CR matches to MG592451 (Vibrio phage 1.075.O._10N.286.55.B10, partial genome) position: , mismatch: 7, identity: 0.781

tcgcgtaacgttctgttttcagcatcggcctt	CRISPR spacer
tcgcgtaacgttctattttcagcttccaaatc	Protospacer
**************.******** ** .  *.

23. spacer 5.13|4425278|32|NZ_CP011254|PILER-CR matches to MG592467 (Vibrio phage 1.093.O._10N.286.55.E10, partial genome) position: , mismatch: 7, identity: 0.781

tcgcgtaacgttctgttttcagcatcggcctt	CRISPR spacer
tcgcgtaacgttctattttcagcttccaaatc	Protospacer
**************.******** ** .  *.

24. spacer 5.13|4425278|32|NZ_CP011254|PILER-CR matches to MG592401 (Vibrio phage 1.017.O._10N.286.55.C11, partial genome) position: , mismatch: 7, identity: 0.781

tcgcgtaacgttctgttttcagcatcggcctt	CRISPR spacer
tcgcgtaacgttctattttcagcttccaaatc	Protospacer
**************.******** ** .  *.

25. spacer 5.17|4425268|32|NZ_CP011254|CRISPRCasFinder,CRT matches to MG592468 (Vibrio phage 1.094.O._10N.286.55.E12, partial genome) position: , mismatch: 7, identity: 0.781

tcgcgtaacgttctgttttcagcatcggcctt	CRISPR spacer
tcgcgtaacgttctattttcagcttccaaatc	Protospacer
**************.******** ** .  *.

26. spacer 5.17|4425268|32|NZ_CP011254|CRISPRCasFinder,CRT matches to MG592451 (Vibrio phage 1.075.O._10N.286.55.B10, partial genome) position: , mismatch: 7, identity: 0.781

tcgcgtaacgttctgttttcagcatcggcctt	CRISPR spacer
tcgcgtaacgttctattttcagcttccaaatc	Protospacer
**************.******** ** .  *.

27. spacer 5.17|4425268|32|NZ_CP011254|CRISPRCasFinder,CRT matches to MG592467 (Vibrio phage 1.093.O._10N.286.55.E10, partial genome) position: , mismatch: 7, identity: 0.781

tcgcgtaacgttctgttttcagcatcggcctt	CRISPR spacer
tcgcgtaacgttctattttcagcttccaaatc	Protospacer
**************.******** ** .  *.

28. spacer 5.17|4425268|32|NZ_CP011254|CRISPRCasFinder,CRT matches to MG592401 (Vibrio phage 1.017.O._10N.286.55.C11, partial genome) position: , mismatch: 7, identity: 0.781

tcgcgtaacgttctgttttcagcatcggcctt	CRISPR spacer
tcgcgtaacgttctattttcagcttccaaatc	Protospacer
**************.******** ** .  *.

29. spacer 3.5|4410873|32|NZ_CP011254|CRISPRCasFinder,CRT matches to MN602268 (Bacteriophage DSS3_MAL1, complete genome) position: , mismatch: 8, identity: 0.75

ttgatgctcatagcctgcgccatcaggttcat	CRISPR spacer
gagacgtccagagcctgcgccatcatgttcac	Protospacer
  **.*..** ************** *****.

30. spacer 3.14|4411413|32|NZ_CP011254|CRISPRCasFinder,CRT matches to NZ_CP015356 (Bacillus thuringiensis strain MYBT18246 plasmid p101287, complete sequence) position: , mismatch: 8, identity: 0.75

ttcactg-gcttgcctgaatgcctgagcgatct	CRISPR spacer
-ccatgacacttgcctgattgccagagcgatct	Protospacer
 .**. . .********* **** *********

31. spacer 3.19|4411713|32|NZ_CP011254|CRISPRCasFinder,CRT matches to NZ_CP025432 (Paracoccus zhejiangensis strain J6 plasmid pPZ02, complete sequence) position: , mismatch: 8, identity: 0.75

tgggagtggtggcagaagggccgggagagtct	CRISPR spacer
ccggagtggtggctgaagggccgggcttggcc	Protospacer
. *********** ***********   * *.

32. spacer 3.20|4411773|32|NZ_CP011254|CRISPRCasFinder,CRT matches to MK972713 (Salmonella phage SW5, complete genome) position: , mismatch: 8, identity: 0.75

tcggcaaccctatcaaccagcaggacgcggcc	CRISPR spacer
gaggcaaccccatcaaccagcgggacaagttc	Protospacer
  ********.**********.****. * .*

33. spacer 3.20|4411773|32|NZ_CP011254|CRISPRCasFinder,CRT matches to MK972714 (Salmonella phage SW3, complete genome) position: , mismatch: 8, identity: 0.75

tcggcaaccctatcaaccagcaggacgcggcc	CRISPR spacer
gaggcaaccccatcaaccagcgggacaagttc	Protospacer
  ********.**********.****. * .*

34. spacer 3.20|4411773|32|NZ_CP011254|CRISPRCasFinder,CRT matches to NC_049460 (Salmonella phage SI7, complete genome) position: , mismatch: 8, identity: 0.75

tcggcaaccctatcaaccagcaggacgcggcc	CRISPR spacer
gaggcaaccccatcaaccagcgggacaagttc	Protospacer
  ********.**********.****. * .*

35. spacer 3.31|4412434|32|NZ_CP011254|CRISPRCasFinder,CRT,PILER-CR matches to MK552105 (Escherichia phage Jahat_MG145, complete genome) position: , mismatch: 8, identity: 0.75

agaatactgcaggaaatcagcgacaagaccaa	CRISPR spacer
aagcagcagcaggaaatcatcgacaagagcaa	Protospacer
*..  .* *********** ******** ***

36. spacer 3.31|4412434|32|NZ_CP011254|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 8, identity: 0.75

agaatactgcaggaaatcagcgacaagaccaa	CRISPR spacer
atcatggtgcaggaaatgaacgacaagacccg	Protospacer
*  **. ********** *.********** .

37. spacer 3.36|4412734|32|NZ_CP011254|CRISPRCasFinder,CRT,PILER-CR matches to MK972713 (Salmonella phage SW5, complete genome) position: , mismatch: 8, identity: 0.75

tcggcaaccctatcaaccagcaggacgcggcc	CRISPR spacer
gaggcaaccccatcaaccagcgggacaagttc	Protospacer
  ********.**********.****. * .*

38. spacer 3.36|4412734|32|NZ_CP011254|CRISPRCasFinder,CRT,PILER-CR matches to MK972714 (Salmonella phage SW3, complete genome) position: , mismatch: 8, identity: 0.75

tcggcaaccctatcaaccagcaggacgcggcc	CRISPR spacer
gaggcaaccccatcaaccagcgggacaagttc	Protospacer
  ********.**********.****. * .*

39. spacer 3.36|4412734|32|NZ_CP011254|CRISPRCasFinder,CRT,PILER-CR matches to NC_049460 (Salmonella phage SI7, complete genome) position: , mismatch: 8, identity: 0.75

tcggcaaccctatcaaccagcaggacgcggcc	CRISPR spacer
gaggcaaccccatcaaccagcgggacaagttc	Protospacer
  ********.**********.****. * .*

40. spacer 4.5|4421922|32|NZ_CP011254|PILER-CR,CRISPRCasFinder,CRT matches to MN694404 (Marine virus AFVG_250M623, complete genome) position: , mismatch: 8, identity: 0.75

ttggtcatcatcacagtctttcccacgaccac	CRISPR spacer
ttggtcatcatcacaatctttccaccctttag	Protospacer
***************.*******  *  ..* 

41. spacer 4.5|4421922|32|NZ_CP011254|PILER-CR,CRISPRCasFinder,CRT matches to KY549659 (Pectobacterium phage vB_PatP_CB4, complete genome) position: , mismatch: 8, identity: 0.75

ttggtcatcatcacagtctttcccacgaccac-	CRISPR spacer
ctcgtcatcatcccagtctttaccac-atggca	Protospacer
.* ********* ******** **** *. .* 

42. spacer 4.5|4421922|32|NZ_CP011254|PILER-CR,CRISPRCasFinder,CRT matches to NC_048704 (Pectobacterium phage Nepra, complete genome) position: , mismatch: 8, identity: 0.75

ttggtcatcatcacagtctttcccacgaccac-	CRISPR spacer
ctcgtcatcatcccagtctttaccac-atggca	Protospacer
.* ********* ******** **** *. .* 

43. spacer 4.5|4421922|32|NZ_CP011254|PILER-CR,CRISPRCasFinder,CRT matches to KY514265 (Pectobacterium phage vB_PatP_CB3, complete genome) position: , mismatch: 8, identity: 0.75

ttggtcatcatcacagtctttcccacgaccac-	CRISPR spacer
ctcgtcatcatcccagtctttaccac-atggca	Protospacer
.* ********* ******** **** *. .* 

44. spacer 3.2|4410693|32|NZ_CP011254|CRISPRCasFinder,CRT matches to DQ500118 (Rhizobium phage 16-3, complete genome) position: , mismatch: 9, identity: 0.719

ttacgccattgcctaggtgatatgcgtaaact	CRISPR spacer
gtttgccatcgcctaggtgatatgggtcggcc	Protospacer
 * .*****.************** ** ..*.

45. spacer 3.5|4410873|32|NZ_CP011254|CRISPRCasFinder,CRT matches to NC_012853 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132503, complete sequence) position: , mismatch: 9, identity: 0.719

ttgatgctcatagcctgcgccatcaggttcat	CRISPR spacer
gcactgctcatagccttcgcgatcaggatgac	Protospacer
 .. ************ *** ****** * *.

46. spacer 3.14|4411413|32|NZ_CP011254|CRISPRCasFinder,CRT matches to NZ_CP012644 (Rufibacter tibetensis strain 1351 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.719

ttcactggcttgcctgaatgcctgagcgatct------	CRISPR spacer
ttcactggcttgcataaatgcct------cctactatt	Protospacer
************* *.*******      .**      

47. spacer 3.22|4411893|32|NZ_CP011254|CRISPRCasFinder,CRT matches to MT647606 (Pelagibacter phage Mosig EXVC030M, partial genome) position: , mismatch: 9, identity: 0.719

taccagaacctggtataccttccgtgcctatg	CRISPR spacer
caccagaacctggaatatcttccgtaggtgct	Protospacer
.************ ***.*******.  *.. 

48. spacer 3.41|4413034|32|NZ_CP011254|CRISPRCasFinder,CRT,PILER-CR matches to MH590589 (Streptomyces phage SparkleGoddess, complete genome) position: , mismatch: 9, identity: 0.719

atacggaagaatttgaacatgtcatgcagacg	CRISPR spacer
acgttgtggaatttgaacatggcaggcagaca	Protospacer
*... * .************* ** ******.

49. spacer 4.4|4421862|32|NZ_CP011254|PILER-CR,CRISPRCasFinder,CRT matches to MK448826 (Streptococcus phage Javan645, complete genome) position: , mismatch: 9, identity: 0.719

ataaagtgttgccgtagcatcaaggcttcccc	CRISPR spacer
ataaagtgttgcagtagcttcaacataatacc	Protospacer
************ ***** **** ..  . **

50. spacer 4.4|4421862|32|NZ_CP011254|PILER-CR,CRISPRCasFinder,CRT matches to MK449001 (Streptococcus phage Javan640, complete genome) position: , mismatch: 9, identity: 0.719

ataaagtgttgccgtagcatcaaggcttcccc	CRISPR spacer
ataaagtgttgcagtagcttcaacataatacc	Protospacer
************ ***** **** ..  . **

51. spacer 5.5|4424799|32|NZ_CP011254|PILER-CR,CRISPRCasFinder,CRT matches to NC_049442 (Arthrobacter phage KBurrousTX, complete genome) position: , mismatch: 9, identity: 0.719

aaagccagcggggcagcacacacagggggaga	CRISPR spacer
ccagccggcggggcagcccacacaggtgactt	Protospacer
  ****.********** ******** *.   

52. spacer 5.10|4425099|31|NZ_CP011254|PILER-CR matches to MH598799 (Pelagibacter phage HTVC025P, complete genome) position: , mismatch: 9, identity: 0.71

gaggcgtagagccagttgcatcaagaagaag	CRISPR spacer
acggtgtagaaccagttgcatcaagtacttc	Protospacer
. **.*****.************** *    

53. spacer 5.11|4425158|32|NZ_CP011254|PILER-CR matches to NZ_CP045074 (Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cttcccgatgccgtcacgcttgagcaacgtaa	CRISPR spacer
tttgccgatgccgtcacgcatgaggagtgctt	Protospacer
.** *************** **** *..*.  

54. spacer 5.15|4425148|32|NZ_CP011254|CRISPRCasFinder,CRT matches to NZ_CP045074 (Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cttcccgatgccgtcacgcttgagcaacgtaa	CRISPR spacer
tttgccgatgccgtcacgcatgaggagtgctt	Protospacer
.** *************** **** *..*.  

55. spacer 3.8|4411053|32|NZ_CP011254|CRISPRCasFinder,CRT matches to NZ_CP039495 (Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000669 plasmid pCFSAN000669_2, complete sequence) position: , mismatch: 10, identity: 0.688

cttctcgtttgataacgccagcactcagcgcg	CRISPR spacer
attctcgattgataacgccaggacccgcgcta	Protospacer
 ****** ************* **.*.   ..

56. spacer 3.8|4411053|32|NZ_CP011254|CRISPRCasFinder,CRT matches to MH370387 (Salmonella phage S149, complete genome) position: , mismatch: 10, identity: 0.688

cttctcgtttgataacgccagcactcagcgcg	CRISPR spacer
attctcgattgataacgccaggacccgcgcta	Protospacer
 ****** ************* **.*.   ..

57. spacer 3.8|4411053|32|NZ_CP011254|CRISPRCasFinder,CRT matches to MG407615 (Salmonella phage Bp96115, partial genome) position: , mismatch: 10, identity: 0.688

cttctcgtttgataacgccagcactcagcgcg	CRISPR spacer
attctcgattgataacgccaggacccgcgcta	Protospacer
 ****** ************* **.*.   ..

58. spacer 3.8|4411053|32|NZ_CP011254|CRISPRCasFinder,CRT matches to NC_042346 (Salmonella virus BTP1 genome assembly, chromosome: BTP1) position: , mismatch: 10, identity: 0.688

cttctcgtttgataacgccagcactcagcgcg	CRISPR spacer
attctcgattgataacgccaggacccgcgcta	Protospacer
 ****** ************* **.*.   ..

59. spacer 3.8|4411053|32|NZ_CP011254|CRISPRCasFinder,CRT matches to NC_005841 (Enterobacteria phage ST104 DNA, complete genome) position: , mismatch: 10, identity: 0.688

cttctcgtttgataacgccagcactcagcgcg	CRISPR spacer
attctcgattgataacgccaggacccgcgcta	Protospacer
 ****** ************* **.*.   ..

60. spacer 3.21|4411833|32|NZ_CP011254|CRISPRCasFinder,CRT matches to NZ_CP035511 (Haematobacter massiliensis strain OT1 plasmid pOT1-1, complete sequence) position: , mismatch: 10, identity: 0.688

actgaagttaacgctggaaagccgcaagacca	CRISPR spacer
gctgaagttcacgctggaaacccggctggtgc	Protospacer
.******** ********** ***   *..  

61. spacer 5.11|4425158|32|NZ_CP011254|PILER-CR matches to NC_028850 (Yersinia phage vB_YenP_ISAO8, complete genome) position: , mismatch: 10, identity: 0.688

cttcccgatgccgtcacgcttgagcaacgtaa	CRISPR spacer
ttcttcgatgtcgtcacgcttgaggaactcgg	Protospacer
.*...*****.************* *** ...

62. spacer 5.15|4425148|32|NZ_CP011254|CRISPRCasFinder,CRT matches to NC_028850 (Yersinia phage vB_YenP_ISAO8, complete genome) position: , mismatch: 10, identity: 0.688

cttcccgatgccgtcacgcttgagcaacgtaa	CRISPR spacer
ttcttcgatgtcgtcacgcttgaggaactcgg	Protospacer
.*...*****.************* *** ...

63. spacer 3.41|4413034|32|NZ_CP011254|CRISPRCasFinder,CRT,PILER-CR matches to NC_047960 (Enterobacteria phage vB_EcoS_IME347, complete genome) position: , mismatch: 11, identity: 0.656

atacggaagaatttgaacatgtcatgcagacg	CRISPR spacer
ccctcacagaatttgaacaggtcaagcagaat	Protospacer
 . . . ************ **** *****  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 271614 : 310443 39 Escherichia_phage(20.0%) tail,integrase attL 264233:264248|attR 290870:290885
DBSCAN-SWA_2 1357242 : 1367037 8 environmental_Halophage(16.67%) NA NA
DBSCAN-SWA_3 3867783 : 3878951 11 Enterobacteria_phage(60.0%) NA NA
DBSCAN-SWA_4 3978294 : 3987113 6 Escherichia_phage(83.33%) tRNA NA
DBSCAN-SWA_5 4449134 : 4485743 33 Moraxella_phage(16.67%) coat,transposase,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage