CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011413	Sedimenticola thiotaurini strain SIP-G1 plasmid, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP011412	Sedimenticola thiotaurini strain SIP-G1 chromosome, complete genome	3 crisprs	csa3,DinG,cas3,DEDDh,WYL,cas2,cas1,cas9,cas6	0	23	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011412_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011412_1

515668-515745

Orphan

Consensus_repeat	Method
GCGGCATAAGCCCGTCCCTGGGCAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011412_1

>merge|NZ_CP011412|1|515668-515745|CRISPRCasFinder
GCGGCATAAGCCCGTCCCTGGGCAAAGTCGCTCCCGGCCATCCATGGCCTGCGCGGCATAAGCCCGTCCCTGGGCAAA

>NZ_CP011412|1|1|515668-515745|CRISPRCasFinder
GCGGCATAAGCCCGTCCCTGGGCAAA	GTCGCTCCCGGCCATCCATGGCCTGC
GCGGCATAAGCCCGTCCCTGGGCAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011412.1\|WP_046858300.1\|511278_512400_+\|methyltransferase	unknown	unknown	gnl\|CDD\|184963
NZ_CP011412.1\|WP_046858305.1\|521566_522163_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP011412.1\|WP_046858308.1\|523856_524201_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380351
NZ_CP011412.1\|WP_052761006.1\|517349_519290_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NZ_CP011412.1\|WP_046858304.1\|520280_521465_-\|aminopeptidase-P-family-protein	unknown	unknown	gnl\|CDD\|223085
NZ_CP011412.1\|WP_046858302.1\|515985_517014_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|172537
NZ_CP011412.1\|WP_046858295.1\|507859_508180_+\|quaternary-ammonium-compound-efflux-SMR-transporter-SugE	unknown	unknown	gnl\|CDD\|171110
NZ_CP011412.1\|WP_046858303.1\|519365_520268_-\|DUF2520-domain-containing-protein	unknown	unknown	gnl\|CDD\|378484
NZ_CP011412.1\|WP_046860945.1\|513940_515611_-\|acetolactate-synthase-2-catalytic-subunit	unknown	unknown	gnl\|CDD\|181601
NZ_CP011412.1\|WP_052761005.1\|509409_510438_+\|thioredoxin-fold-domain-containing-protein	unknown	unknown	gnl\|CDD\|239249
NZ_CP011412.1\|WP_046858310.1\|524544_527370_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_CP011412.1\|WP_046858301.1\|513647_513944_-\|acetolactate-synthase-2-small-subunit	unknown	unknown	gnl\|CDD\|236862
NZ_CP011412.1\|WP_046858297.1\|509079_509319_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011412.1\|WP_046860944.1\|512692_513535_-\|deoxyribonuclease-IV	unknown	unknown	gnl\|CDD\|179214
NZ_CP011412.1\|WP_046858296.1\|508287_509061_+\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_CP011412.1\|WP_046858306.1\|522327_523110_+\|tRNA-cyclic-N6-threonylcarbamoyladenosine(37)-synthase-TcdA	unknown	unknown	gnl\|CDD\|224100
NZ_CP011412.1\|WP_052761340.1\|523122_523425_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011412.1\|WP_046858299.1\|510500_511292_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|377360
NZ_CP011412.1\|WP_046858309.1\|524230_524443_-\|DUF465-domain-containing-protein	unknown	unknown	gnl\|CDD\|227768
NZ_CP011412.1\|WP_046858294.1\|507019_507688_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715

Protein	Function_ID	Function_description	E-value
NZ_CP011412.1\|WP_046858300.1\|511278_512400_+\|methyltransferase	gnl\|CDD\|184963	PRK15001, PRK15001, 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG.	3.07182e-110
NZ_CP011412.1\|WP_046858305.1\|521566_522163_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.60453e-12
NZ_CP011412.1\|WP_046858308.1\|523856_524201_-\|cupin-domain-containing-protein	gnl\|CDD\|380351	cd02222, cupin_TM1459-like, Thermotoga maritima TM1459 and related proteins, cupin domain. This family includes bacterial and archaeal proteins homologous to Thermotoga maritima TM1459, a manganese-containing cupin that has been shown to cleave C=C bonds in the presence of alkylperoxide as oxidant in vitro. Its biological function is still unknown. This family also includes Halorhodospira halophila Hhal_0468. Structures of these proteins show a cupin fold with a conserved "jelly roll-like" beta-barrel fold that form a homodimer.	4.81144e-46
NZ_CP011412.1\|WP_052761006.1\|517349_519290_+\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	1.08398e-109
NZ_CP011412.1\|WP_046858304.1\|520280_521465_-\|aminopeptidase-P-family-protein	gnl\|CDD\|223085	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism].	6.04676e-60
NZ_CP011412.1\|WP_046858302.1\|515985_517014_-\|hypothetical-protein	gnl\|CDD\|172537	PRK14045, PRK14045, 1-aminocyclopropane-1-carboxylate deaminase; Provisional.	9.52456e-17
NZ_CP011412.1\|WP_046858295.1\|507859_508180_+\|quaternary-ammonium-compound-efflux-SMR-transporter-SugE	gnl\|CDD\|171110	PRK11431, PRK11431, quaternary ammonium compound efflux SMR transporter SugE.	3.96125e-31
NZ_CP011412.1\|WP_046860945.1\|513940_515611_-\|acetolactate-synthase-2-catalytic-subunit	gnl\|CDD\|181601	PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit; Reviewed.	0
NZ_CP011412.1\|WP_052761005.1\|509409_510438_+\|thioredoxin-fold-domain-containing-protein	gnl\|CDD\|239249	cd02951, SoxW, SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.	7.49878e-29
NZ_CP011412.1\|WP_046858310.1\|524544_527370_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_CP011412.1\|WP_046858301.1\|513647_513944_-\|acetolactate-synthase-2-small-subunit	gnl\|CDD\|236862	PRK11152, ilvM, acetolactate synthase 2 small subunit.	4.91323e-15
NZ_CP011412.1\|WP_046858294.1\|507019_507688_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.48928e-23
NZ_CP011412.1\|WP_046860944.1\|512692_513535_-\|deoxyribonuclease-IV	gnl\|CDD\|179214	PRK01060, PRK01060, endonuclease IV; Provisional.	6.47996e-176
NZ_CP011412.1\|WP_046858296.1\|508287_509061_+\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	2.22787e-24
NZ_CP011412.1\|WP_046858306.1\|522327_523110_+\|tRNA-cyclic-N6-threonylcarbamoyladenosine(37)-synthase-TcdA	gnl\|CDD\|224100	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism].	4.51995e-116
NZ_CP011412.1\|WP_046858299.1\|510500_511292_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|377360	pfam04445, SAM_MT, Putative SAM-dependent methyltransferase. This is a family of putative SAM-dependent methyltransferases.	4.55856e-112
NZ_CP011412.1\|WP_046858309.1\|524230_524443_-\|DUF465-domain-containing-protein	gnl\|CDD\|227768	COG5481, COG5481, Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown].	5.63853e-10
NZ_CP011412.1\|WP_046858303.1\|519365_520268_-\|DUF2520-domain-containing-protein	gnl\|CDD\|378484	pfam10728, DUF2520, Domain of unknown function (DUF2520). This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases.	9.88606e-43

>NZ_CP011412.1|WP_046860945.1|513940_515611_-|acetolactate-synthase-2-catalytic-subunit
MNGAQYIVRKLMSEGVDTLFGYPGGCVMPIYDALLESPVRHILCRHEQGTAFAANGYARSSGRIGVCLATSGPGATNLMTGLADAYMDSVPMVAITGQVPTPLIGTDAFQEIDVLGMSLPITKQSFLVQSIQELPEILDQAFRIAREGRPGPVLVDLPKDVQLASLPGHTLPQPAAEPDQQPLPDEQLQGAIELLRSSRKPIIYGGGGILLGDAINLFRKFVETSGIPAVFSLKGLGALPGNHPLNLGMLGMHGSVAANQLVQEADLLVAVGVRFDDRVTGKLNRFAPNARVIHLDIDPAEIGKLRPASCALAGDIRQSLKAMTLQLNLEEWQTECRERRDRDGFSLPKPEGITGPHFMRQLSRMTRGHAIISCDVGQHQMWVAQHYAFNHPRQHLTSGGLGAMGFGLPAAIGAQLANPETPVINIAGDGSFQMNTQELATIGRYQLPIKIIILDNQALGMVRQQQAVCYQERYSEIDLSDNPDFCTLARAFNIAAHSISEPEDMAYAIGKLLDAPGPALLHVAIATEHNVWPMVKPGDANDQILTDHQTTTGAHP
>NZ_CP011412.1|WP_046858301.1|513647_513944_-|acetolactate-synthase-2-small-subunit
MIFSLHIKAQSTPAMLEKILQTTRVRGFAVRSMDVKNNDAERLLKVHLTVESDRPQERLVTQLNKLGGIRELSSLHAVADPAPQMGGDYGKVSLMYPL
>NZ_CP011412.1|WP_046860944.1|512692_513535_-|deoxyribonuclease-IV
MKRIGAHVSASGGVENAPLNAQAIGAKAFALFTKNQRQWKAKPLTDASISRFRENLEHAAIEPRFVLPHDSYLINLGHPEQEALQKSRDAFLDEMRRCEQLGLSLLNFHPGSHLKKISEEESLARVADSINWTLEQTSGVTAVIENTAGQGTNLGYRFEHLASIIDQVEDKSRVGVCLDTCHTFTAGYDLRSAEACDQTFAEFERIVGFSYLRGVHLNDSKPDLGSRVDRHESLGKGKLGWPVFEYIMNDPRFEEIPMVLETVDDTIWADEIRQLYAFQR
>NZ_CP011412.1|WP_046858300.1|511278_512400_+|methyltransferase
MQQLEVPTGRFILRRYPLRKRETLRAWDAADEYLLDHLGQEVNGRVLIVNDTFGALSVALSQWAPTHQSDSFLATWSARENLAANGYDPERIDFITALDKPQGLYDLVLVRVTKTQGLLEHELIQLRSHLAPDARLIGCGMARQIHTSTLQLFERIIGPTTTSLARKKARLIFASPEPTLEESDSPYPVRYLLEGSGFQLVNHANVFSRDKLDIGTRLLLEHIPADNGYRDIIDLGCGNGVVGLIAAQHNPAATIHFVDESAMAVASAQATYAGAGLPNPARFVQGDALSQFPPASADLILCNPPFHQGNVVGDEIAWRMFNQARRTLRKGGELRIIGNRHLNYHVKLKRLFGNVQQMAANRKFVVLKSFKNG
>NZ_CP011412.1|WP_046858299.1|510500_511292_+|class-I-SAM-dependent-methyltransferase
MSEQLSVVGVAAASAEQQPAAAQLAAALSLPCVRFDPDKSGLVLLQQVDRLELRQTGPGAPGPVWVDFVGGKAAHRRKFGGGRGQPLARAAGLKKGATPRILDMTAGLGRDGFVLATLGCEVVMMERSPVIHALLSDGLQRARQDSEVGAIAERIRLLCQDGRDYLVSAGEERPDVVYLDPMYPHRDKSARVKKEMRLLQLLLGEDRDSGELLASALGTALSRVVVKRPVKAPPLHGPAPSLSIGSPNTRYDIYLTGANHAAT
>NZ_CP011412.1|WP_052761005.1|509409_510438_+|thioredoxin-fold-domain-containing-protein
MLDSYLLRAWLVLLMLLVGATAAAESEGRFLGARETVYPDWFKNSFLDIREDVAEAQESGRRVMLFFHQDGCPYCNLLVERNLSQREIEQQVRRQLDVIGINMWGDRTVVDLNGQEQTEKSFSAALRVQFTPTLLFLDEAGQVILRLNGYIPPARFKLALDYVAGRLEQQMSYRDYLATHQAGTAEGPGLRVQPFFMAPPHDLSLVQEPLAVFFEQSDCPACNRLHDELLSDPEIRQLVGRTHAVQLDMWADTPIITPAGERTTARQWAQKLAINYAPSVVLFDPQSGEVIRSEAFFKRFHTASIFDYLLSGAYKTEPSFQRYLSARVEHIREQGRDVDIWQ
>NZ_CP011412.1|WP_046858297.1|509079_509319_-|hypothetical-protein
MKISIDITPEEMRTLMGWPDVQPLQEEMIDKIREQMDAGAEGYDPLSLMKPFLAQSSNSMESFQKLIAGVMSAYSKQGD
>NZ_CP011412.1|WP_046858296.1|508287_509061_+|sulfite-exporter-TauE/SafE-family-protein
MLFEVLFLFLAGFFGGVLNSIAGGGSFITFPALLFVGVPPISANATNTFSSCSGYISGAYAFRRELMAHRTELPRFVLVSLVGGVGGAWLLLQTPETLFQEAIPWLLLFATLLFILGGRINLVLRGLASMHRHASSVGQLLLLIFLLGVCVYGGFFNAGLGIITLSYLALAGYADINAMNGIKLLVSTVVSLIAIALFVFDGVIAWYEGTLVLLGTLTGGYVAAHAARRLPQTRVRQFVIVVSVAVTGYFFYHTYGM
>NZ_CP011412.1|WP_046858295.1|507859_508180_+|quaternary-ammonium-compound-efflux-SMR-transporter-SugE
MSWLILVIAGLFEVGWAVGLKYTDGFSRFWPSLWTLLSMIVSIWLLSVAMKVLPVGTAYPIWVGVGAIGTVVLGIVLMGEAVNALRLVSILLIIVGIVGLKISSVS
>NZ_CP011412.1|WP_046858294.1|507019_507688_+|HAMP-domain-containing-histidine-kinase
MRFYDVLASLIHDMKNSLSLVIHTLDGITLDTATDSTNQARITLLQNEAKRLNNNLIELLTLYNIENERISPSIEEVDVAGFIAEIMAENRSSVEANHIELTSDCDPELFGYFDENLIRNVLNNLVGNGIRYTHDQLLISAVEEAGYLVFRVEDNGPGYPEPMLSSQALKNEQSDLADGRTKLGLYFAAMIAEMHRNGEQQGFIRLENNHRLSGGCFSIWLP
>NZ_CP011412.1|WP_046858302.1|515985_517014_-|hypothetical-protein
MSLPDPLQHLIGDKLDREMNWKSRCHRLNGYLPATCSSPVFIKREDELNANAVGTKHRKYLSLLPTLEHNGNDRIILIGSAHSNNVMGLAQLLRSRGMDVSVLIKAPGNSRLMGNHLLLTMLLPPDRIEYISHREWPQVMEIADQRVAELNKRGVSATVIAEGGYNEAVLPGILTLAADLHRNIGELGIDFTDIWSDSGTGVSAIGLLLGMRLLGLSEPRVHITLIAGSPDEFQHRYQQFAQWLTKLMQQPLPPRCPEVRFMQPASAASYGSINKTILSESWAIARQTGLLMDPVYSVKHFYTVKCAMERQAPTGPQLILYNGGTLAMCGFQSALASQQPIV
>NZ_CP011412.1|WP_052761006.1|517349_519290_+|EAL-domain-containing-protein
MTDDSSVEPDLRHELETLDRRMAELDSLITRSVVGEPGAGTTVDPCPQDCQGLWPHSAESQADIQQLQETVSLLKATLNSTTDAILVLDNTMRVVIYNSRFVTLWNIPPTLDRKDKKGWLRAFTAPLMENRERFIQRIREQLSDTGAATRDILRFTDGRIFESFSHPQLIEGEIVGRVWSFRDVTKQHQAQELVEYQATYDPLTDLPNRRLLLDRLNQMLARCRRHARIGALLFLDLDNFKTINDTLGHPIGDALLQQVARRLTECSRREDTAARLGGDEFVLLLAEESTGLEDYTRHVETAAAKVLAALSEAYEVQGHRLYASTSIGVSLFPQNSESADDVLMQADTAMYRAKEAGRNTVRFFLPTMHKHSEDQLKMQNDLRQALDRDELKILWQPKHDFSGNTLGAEALLRWEHPGRGLIMPGEFISVAEEIGIITSLGNKVLEVTCNLLRKMADEYAEAGPIHLSVNISPQQFQQADFTSQVAHYLETSGANPTRLTLELTENMLVTNLEGVMAKMVELKRLGVRFSIDDFGTGYSSMAYLKRLPLDEIKIDRSFVNDIISDPETVSIVEAIITMASKLGLSVVAEGVEHSREFDFLRKRGCNCFQGYMLCHPLDETEFLEFIMDGNVSNVRKKGAQSVFEGF
>NZ_CP011412.1|WP_046858303.1|519365_520268_-|DUF2520-domain-containing-protein
MTKERIALVGAGAAGGALLLALHRAGYPIAGIASRTLASAQRCASLTGNPPASEDPAPAVVSADIIIVATPDGQIEPVCRSIADQGVIRPGQLFLHLSGARTADTLKPAAHKGAEVLALHPIQSLADPEKGAQLLLGSWFCLEGSAAAIGRGTALVEALQGQTLVVPADKKALYHAALCVASNYLITLESLAVTLLEQLGINRQDGLKALLPLIAGSVDNLAHSGLPDALTGPISRGDTTTIAAHIDALRQIPPDYQAIYRMLAKETVKLALEKGGLDQEEAEQIQLLLTPQPPDECLIS
>NZ_CP011412.1|WP_046858304.1|520280_521465_-|aminopeptidase-P-family-protein
MSEHLERIKDFQRELVNQGLGAALLFYSRDIFYYTGIAQPAYLAVFPDDYRLFVRSGYPYALQTAAIEPSHITEERRLDFIYQEYFSYLWNKRLGMELDLLPANSYLAYQKLFEDFELLDVSPLIMQQRAVKSTNEIGQIRRACRVVEAGQQAIIQGLRPGITELELSAMIENSHRLAGHEGGIFLRHPDLPLGMGPISSGPNLADFTGLVYSVSGVGLSPALPIGPSNRMISDGDPVVVDIPSMVNGYHADQSRTYVAGKATPRLKGLYADLLEIADFVIDSIKPGMGCDQVYDLAVGKAAELGVQEQFLKFTGDSHCRLIGHGVGIEVNEPPVLIANNRATIPDNCVLAIEMHMLDKHAGVVKIEDTVLISSTGNEILTKASRDLIECTTTG
>NZ_CP011412.1|WP_046858305.1|521566_522163_-|TetR/AcrR-family-transcriptional-regulator
METKGERTRQHIIDKSLQLFSVKGYYSTSINNILEATDLTKGGLYGHFGSKEAIWYAIYDEAVKLWRRVVFEGVSGIADPLQRIEQVIENDLMNYLGGHTFKGGCFFLNSLVELSGQSPEMSRKLLRGFIRFSKLLQRWLAEAESQGQIRPGLNHREIANFIFISLNGAAALYAATRDESVLVQTTSQLHQYVKQLKA
>NZ_CP011412.1|WP_046858306.1|522327_523110_+|tRNA-cyclic-N6-threonylcarbamoyladenosine(37)-synthase-TcdA
MDYTRRFGGIARLYGTAALDRFAAAHVCVVGIGGVGSWVVEALARSGVGALTLVDLDNVAESNVNRQIHALDGQFGRPKVDAMAERVRAINPSCRVITREEFVELDNLEQLVTPDYDCLVDCIDAFKVKAALIAHCRRNRIRLVTVGGAGGQTDPLKIRLTDLYKTQHDPLLAKTRKLLRKAYGFPKNPKRRFDVPCVYSDEQQVYPDGSGEVCQTKPAAGEADSSLNCGGFGSSMAVTATFAMVATAQVLKRLAIGRES
>NZ_CP011412.1|WP_052761340.1|523122_523425_-|hypothetical-protein
MSKTALAQENRQYRGTTAISEGCRESGFVPAFYDTLSDRSVISRYADGSQAPIHLLDGVPVEWVSEYDAEGHVSSLRPGVIAGFLRDGRFYTREEVAEAK
>NZ_CP011412.1|WP_046858308.1|523856_524201_-|cupin-domain-containing-protein
MKITRLNECEPTPVNMAGIKGVVKQVPIGKADGAPNFSIRVFTLEPGGHTPHHSHESEHLNYILEGSGVALEGDTEHAIRQGDYLLVKPHEVHQYRNTGDKPLVFMCMVPSAYE
>NZ_CP011412.1|WP_046858309.1|524230_524443_-|DUF465-domain-containing-protein
MISIDAQHEELRNRLFQVRQEHRDLDVAIAALTETAYRNELQLKRLKRRKLMLKDAITKLEDELIPDLDA
>NZ_CP011412.1|WP_046858310.1|524544_527370_-|valine--tRNA-ligase
MEKTYDPHNLEKRWYQTWEERGYFAPAADADSQNPYCIMIPPPNVTGSLHMGHAFQDTIMDALIRYHRMKGDKTLWQAGSDHAGIATQMVVERLINAEGKTRHDYGREKFLEKVWEWKAQSGGTITSQLRRMGASLDWEHERFTMDEGLSDAVKEVFVRLFEEGLIYRGKRLVNWDPKLHTAVSDLEVLSEEENGFLWHMRYPLTNGQGHLVVATTRPETMLGDCAVAVHPGDERYTHLLGEFVELPLTGRRIPIIADDYVDPEFGTGCVKITPAHDFNDYQVWLRHRDEKAIAEQPHGGLINVFTIDAAIRDHEADEKHIIPADFIGLDRFDARKKVVADLQSQDLLEKIDDHKLMVPRGDRSGSVIEPFLTDQWYVKVEPLAKPAIEAVESGKIRFVPDNWKNTYYEWMRNIEDWCISRQIWWGHRIPAWYDSDGNIYVGRSEAEVREKHQLAEDYPLRQDEDVLDTWFSSALWPFSTLGWPEQTERVKTFYPTSVLVTGFDIIFFWVARMIMMGLKFMDDVPFKEVYVHGLVRDSHGDKMSKSKGNVLDPIDLIDGIDLEALVSKRTSGMMQPQLAKKIEKATRKEFPDGIPSFGTDALRFTFASQATTGRDIKFDMGRIEGYRNFCNKLWNAARYVLMNTEQHDCGQSGGELELSMADRWILSRLQSTIATVTEATEGYRFDHAAKAIYEFTWNEYCDWYLELSKPVLTSDSASEAAKRGTRHTLVTVLETLLRLAHPIMPYITEEIWQRVAPLAGARGETIMTQPFPVRDDSLTDSAAVAEMEWVMQFILGIRKIKGEMNIAPSKPLPVLLQNADTEDQARLTRNRHYLDFLARLESASLLASDEEPPESAMALVGGMKLLIPMAGLIDKEAELARLEKELGKLKGNITRLEGKLNNPKFVDKAPEAVVQKERDKLASEIAALEKLEQQFKKIQAL

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Crispr_ID: NZ_CP011412_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011412_2

1427194-1427276

Orphan

Consensus_repeat	Method
TTAATCAATGAATCTGACCCTATTGATCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011412_2

>merge|NZ_CP011412|2|1427194-1427276|CRISPRCasFinder
TTAATCAATGAATCTGACCCTATTGATCCTTTGACTCTATTAATTCATTATTGATTAATCAATGACTCTGACCCTATTGATCC

>NZ_CP011412|2|2|1427194-1427276|CRISPRCasFinder
TTAATCAATGAATCTGACCCTATTGATCC	TTTGACTCTATTAATTCATTATTGA
TTAATCAATGACTCTGACCCTATTGATCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011412.1\|WP_046858986.1\|1429376_1431527_-\|NTPase	unknown	unknown	gnl\|CDD\|284995
NZ_CP011412.1\|WP_052761351.1\|1431657_1432554_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011412.1\|WP_046858993.1\|1441410_1442007_-\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NZ_CP011412.1\|WP_046858989.1\|1434419_1435127_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP011412.1\|WP_052761101.1\|1420141_1421608_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP011412.1\|WP_046858983.1\|1426436_1427147_-\|transposase	unknown	unknown	gnl\|CDD\|224854
NZ_CP011412.1\|WP_046858980.1\|1424024_1424915_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170
NZ_CP011412.1\|WP_082117057.1\|1423589_1423991_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379331
NZ_CP011412.1\|WP_046858977.1\|1419290_1420145_+\|PhnD/SsuA/transferrin-family-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270289
NZ_CP011412.1\|WP_046858985.1\|1428274_1428682_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011412.1\|WP_046858981.1\|1425081_1425747_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225775
NZ_CP011412.1\|WP_063370451.1\|1418216_1418960_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319873
NZ_CP011412.1\|WP_046858990.1\|1435302_1435557_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226193
NZ_CP011412.1\|WP_046858992.1\|1440972_1441284_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011412.1\|WP_052761102.1\|1422987_1423488_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011412.1\|WP_046858984.1\|1427329_1428097_+\|porin-family-protein	unknown	unknown	gnl\|CDD\|226163
NZ_CP011412.1\|WP_046858982.1\|1425915_1426404_-\|LEA-type-2-family-protein	unknown	unknown	gnl\|CDD\|377000
NZ_CP011412.1\|WP_046858978.1\|1421604_1422936_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP011412.1\|WP_046858991.1\|1435775_1440602_-\|NAD-glutamate-dehydrogenase	unknown	unknown	gnl\|CDD\|377452
NZ_CP011412.1\|WP_046858988.1\|1432953_1434426_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715

Protein	Function_ID	Function_description	E-value
NZ_CP011412.1\|WP_046858986.1\|1429376_1431527_-\|NTPase	gnl\|CDD\|284995	pfam07693, KAP_NTPase, KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.	6.03642e-52
NZ_CP011412.1\|WP_046858993.1\|1441410_1442007_-\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	3.70666e-118
NZ_CP011412.1\|WP_046858989.1\|1434419_1435127_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.51692e-90
NZ_CP011412.1\|WP_052761101.1\|1420141_1421608_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.04011e-32
NZ_CP011412.1\|WP_046858983.1\|1426436_1427147_-\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.9478e-21
NZ_CP011412.1\|WP_046858980.1\|1424024_1424915_-\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	7.0553e-09
NZ_CP011412.1\|WP_082117057.1\|1423589_1423991_-\|hypothetical-protein	gnl\|CDD\|379331	pfam13682, CZB, Chemoreceptor zinc-binding domain. The chemoreceptor zinc-binding domain (CZB) is found in bacterial signal transduction proteins - most frequently receptors involved in chemotaxis and motility, but also in c-di-GMP signalling and nitrate/nitrite-sensing. Originally discovered in the cytoplasmic chemoreceptor TlpD from Helicobacter pylori, it is often found C-terminal to the MCPsignal domain in cytoplasmic chemoreceptor proteins. The CZB domain contains a core sequence motif, Hxx[WFYL]x21-28Cx[LFMVI]Gx[WFLVI]x18-27HxxxH. The highly-conserved H-C-H-H residues of this motif are believed to coordinate zinc; mutating the latter two histidines of the motif to alanines abolishes Zn binding. This domain binds zinc with high affinity, with a Kd in the femtomolar range. This domain has been shown in E. coli to be a zinc sensor that regulates the catalytic activity of pfam00990.	7.99463e-07
NZ_CP011412.1\|WP_046858977.1\|1419290_1420145_+\|PhnD/SsuA/transferrin-family-substrate-binding-protein	gnl\|CDD\|270289	cd13571, PBP2_PnhD_1, Substrate binding domain of uncharacterized ABC-type phosphonate-like transporter; contains the type 2 periplasmic binding fold. This subfamily includes putative periplasmic binding components of an ABC transport system similar to alkylphosphonate binding domain PnhD. These domains are found in PnhD-like proteins that are predicted to function as initial receptors in hypophosphite, phosphonate, or phosphate ABC transport in archaea and eubacteria. They belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.59672e-90
NZ_CP011412.1\|WP_046858981.1\|1425081_1425747_-\|hypothetical-protein	gnl\|CDD\|225775	COG3235, COG3235, Predicted membrane protein [Function unknown].	1.49849e-32
NZ_CP011412.1\|WP_063370451.1\|1418216_1418960_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319873	cd10551, PsrB, polysulfide reductase beta (PsrB) subunit. This family includes the beta subunit of bacterial polysulfide reductase (PsrABC), an integral membrane-bound enzyme responsible for quinone-coupled reduction of polysulfides, a process important in extreme environments such as deep-sea vents and hot springs. Polysulfide reductase contains three subunits: a catalytic subunit PsrA, an electron transfer PsrB subunit and the hydrophobic transmembrane PsrC subunit. PsrB belongs to the DMSO reductase superfamily that contains [4Fe-4S] clusters which transfer the electrons from the A subunit to the hydrophobic integral membrane C subunit via the B subunit. In Shewanella oneidensis, which has highly diverse anaerobic respiratory pathways, PsrABC is responsible for H2S generation as well as its regulation via respiration of sulfur species. PsrB transfers electrons from PsrC (serving as quinol oxidase) to the catalytic subunit PsrA for reduction of corresponding electron acceptors. It has been shown that T. thermophilus polysulfide reductase could be a key energy-conserving enzyme of the respiratory chain, using polysulfide as the terminal electron acceptor and pumping protons across the membrane.	8.55234e-107
NZ_CP011412.1\|WP_046858990.1\|1435302_1435557_-\|hypothetical-protein	gnl\|CDD\|226193	COG3667, PcoB, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism].	0.00779083
NZ_CP011412.1\|WP_046858982.1\|1425915_1426404_-\|LEA-type-2-family-protein	gnl\|CDD\|377000	pfam03168, LEA_2, Late embryogenesis abundant protein. Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This family represents a group of LEA proteins that appear to be distinct from those in pfam02987. The family DUF1511, pfam07427, has now been merged into this family.	4.69524e-09
NZ_CP011412.1\|WP_046858984.1\|1427329_1428097_+\|porin-family-protein	gnl\|CDD\|226163	COG3637, COG3637, Opacity protein and related surface antigens [Cell envelope biogenesis, outer membrane].	1.30586e-07
NZ_CP011412.1\|WP_046858978.1\|1421604_1422936_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	4.2764e-166
NZ_CP011412.1\|WP_046858991.1\|1435775_1440602_-\|NAD-glutamate-dehydrogenase	gnl\|CDD\|377452	pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase. This family consists of several bacterial proteins which are closely related to NAD-glutamate dehydrogenase found in Streptomyces clavuligerus. Glutamate dehydrogenases (GDHs) are a broadly distributed group of enzymes that catalyze the reversible oxidative deamination of glutamate to ketoglutarate and ammonia.	0
NZ_CP011412.1\|WP_046858988.1\|1432953_1434426_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.24167e-58

>NZ_CP011412.1|WP_046858983.1|1426436_1427147_-|transposase
MARLPRLYMPGCAQHVIQRGNNREACFYNEADYKAYLAFLKDAATKYHVAIHAFVLMTNHVHLLVTPSDRQGISRMMQAQGRKYVQYINLTCGRTGTLWEGRYKSTLVDAENYLLTVYRYIELNPVRANMVQHPSEYPWSSYRSNALGKPIQLLTPHSMYRQLGKLDTERQRAYRALFRGKVPERDLKAIREATNKAWALGDDRFKARIEAQTGRRSVPLGRGGDRKSAAFRESQN
>NZ_CP011412.1|WP_046858982.1|1425915_1426404_-|LEA-type-2-family-protein
MRITLPLGLLLLVSLLLSGCAGMMSGYEKPQVNITSFALAPKAETGRAPRFNIGIQVINPNRETLALQGMSYSLEVEGNRVLSGATADLPEVPGYGMAEFVIEASPNLLGGIRLLSDLFTRQRDTLGFRFKARIDAGGILPYINLEESGSFSLSESGRSQGI
>NZ_CP011412.1|WP_046858981.1|1425081_1425747_-|hypothetical-protein
MLNNGLDSGWAWWLCLVLYSCGLLAALWTAPWRRLFSQRLLQHLFLGSTVALIGFWQMRAGLSPGLSIHILGATTMTLMFGWDLAVVAMSLALLGIILFGRQGWASLPVSGFLVVLIPVSVSYGQHLLIRKFLPKNFFIYLLGTAFLGSALSMAAMVLGTVLLYSLADVYPMEKLSYEYLVFLPLIMMSEAMFNGILMTGLMAHFPDLIRTFGSKHYIDGH
>NZ_CP011412.1|WP_046858980.1|1424024_1424915_-|DMT-family-transporter
MPATRTVVLILLTLLAFAGNSVLCRIAFKETSIDAASFTSIRLLSGALMLWLIARFWRRVNRGKGNWTSAVTLFVYAAAFSFAYISLTAATGALILFGAVQATMIGHGVLTGERLHKQQFIGLILALVGLVGLLLPGLSAPPLIGSVLMFISGVAWGIYSLRGKGTDDPIRITAGNFLRATMLAALLSLALISGSNLDIVGVWYAIASGALASGVGYALWYTVLPAMKATNAATVQLSVPLITALAGIIILGEPISIRFMLASLAILGGIALVMMHKEQSISIDTGGSVAVEEGQG
>NZ_CP011412.1|WP_082117057.1|1423589_1423991_-|hypothetical-protein
MKGFSPHYQEKKVDFKQEIDRHLGWIETVASLFGKEEVTQQARQELAQHDRCALGQWLHSEETARWKELPELEQLKRDHEAFHKIAGELLLVLEAGDETKAVALQQALIQKSQKVIGNLHLLEEKEQAAKEEK
>NZ_CP011412.1|WP_052761102.1|1422987_1423488_-|hypothetical-protein
MDLIGYVQDMYLLAAQGEKQGILFWVVVYTFIVSLYSLIFQVRTRYWPYTLGQLSRLAVDKFGGPENTAAGQNYMGRALYRYDVGGESYEGSRVSPWVIVASHNAKFLLEKQLSRVQQYPDGKVRVFYNPNKPQKSYLIVAGKAGIVFTVLLVVVPPLAYFFSYAG
>NZ_CP011412.1|WP_046858978.1|1421604_1422936_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MSHHICLIEDDEILGEALVERFEVEGYDCEWFKDGKSALNALKHKNFSTVISDINLPDFTGEQLYQQLLNDGRTLPPFLFVTGYGSVDQAVRLLKLGAEDYLTKPFEVADLLAKVKSLCERLIPATSDSFPLGVSPGMKAIEAALPRISASDSNVLVTGESGVGKEYVAKALHSASPSGKQTPFVAVNCGAIPESLIEAELFGYVKGAFTGAVSDKRGFFEQADGGTLFLDEIGDMPLQIQVKVLRAIQERQITRIGSEQVRQVNIRLVCATHRDLEAMVADGSFREDLFYRINVVNIQVPPLRDRPDDILWHAQLFLNGVAAKEERRPCTLHPRAEQALLAYPWPGNIRELRNCLERACIFNQSTLLQPEDLFGDTWQRVLASMGDQREESLSDYIQQCERDYISRVLTENGGKIANTANVLGISRKTLWDKMRKLGLKEPG
>NZ_CP011412.1|WP_052761101.1|1420141_1421608_+|HAMP-domain-containing-histidine-kinase
MTRWLFNLSIKHKIPLWGAVLIIVSTLSVCSVFLYRSYHNIESTLATSAGTLGSTLARTLIPTLLHDDVWRGFEIVKAPFTDAHSDNPFQPVVAMVVTKEQQIFVSSDPDNFPMLTELRDLGQGFPELIETITPLDIPPTTIITPDDSEFTFAAIPMIDSDTRLGTLVLLYSRSLLYYMFASSALHGVIIGLVVLAVLLPINWYWGQRMATPLVRLAHRMDEIQTHLPEQLQPELYNYADELGHLFKAYNRMVVALREKEQLERGILSAERLAAIGRLTAGIAHEINNPLAGMLTALDTLKQRDHLDERTLRTLGLVERGLLQVKDTVAALLVEARQQKRRLERQDLEDVYTLMQSTTAKRQVNLTFDIDLPASTAVPASPVRQVVINLLNNAIQAAGDGGWVKCAISSNQEQIRIEVINNGDPILPERLKNLFEPFVSYREGGHGLGLWVTYQLVQQMAGVIEVDSRDGTVSFVVTIPIDENEVEVA
>NZ_CP011412.1|WP_046858977.1|1419290_1420145_+|PhnD/SsuA/transferrin-family-substrate-binding-protein
MPLMLLAGGAGVSGFTRSAWAGKDLVRFGMTPAFLHDQYSLLEDWRVYMSKQLGKKTDFIQRDSYRETMDLLRLNQLDFAWVCDYPYLHLRHLLRLLAVPLYKQKPVYHSYLLVNAKDKQTKSLEDLQGKIFAYADPYSNTGYLVPRYQIHKMNQDPERYFKKSFFTWSHRKVVEAVASGLAQGGAVDSFVWDTLTMLEPALTSRTRVIWQSSGFGFPPMVANIYSVDENYFSQMQQMLLAMPENPEGRALLKRLNLDGFSVQSPTLYDNVAEMMQVFGEYNPT
>NZ_CP011412.1|WP_063370451.1|1418216_1418960_-|4Fe-4S-dicluster-domain-containing-protein
MSESKPQVSRRDFLKKMASGSAVAATATAAPGMAISAARPKRYAMVIDTRRCIGCQACSVACKTENDVPLGETRSWVEYIEKGEFPNVRRSFLPRLCNQCEKPQCVAVCPTGATYKRQEDGIVVVDSDVCIGCKYCIQACPYGMRYINPKTGTADKCDFCLHRVQNGIVPSCVNTCQGRARIFGDLNDPDSEVSKLIATNATTVLRPEMGTEPMVYYIDADHADQRDAAKQGIYIRIETNRRQKERV
>NZ_CP011412.1|WP_046858984.1|1427329_1428097_+|porin-family-protein
MVIEKRLVWTTVLGSLIAISSSAYAQETSEKWNGLYGGFAIGGFYGKASPDTTVSDGTYFNTQNISTLNSTFQEEISDKALSGSALLGYDVQNGNLVYGIEVDLTGMNYSEKHSRNVNYVLPAANSFSVSTELESNFALSIRPKIGYSFGDTMVHLAVGPTLSRFKYRFNFFDDAVPSAASFSDKKTELGYSANLGVNHQLGDGWLLRGDYVYTYYPDIVDGSNLLSRPAAETDVFSHDANFHSHNIRIGLFKRF
>NZ_CP011412.1|WP_046858985.1|1428274_1428682_-|hypothetical-protein
MEEAIVDLLDAFSHSPLVPLEGSYLHLPQPHNEALVERWISNHGVPTLKSKAQAFIDRYKGDFSGFAMLPLMPYPQSQLQSNELYMMWLLGLEKEYWPAILQLTSGAKLPNKARKQFRKAFVDMVYRSCQSIQEK
>NZ_CP011412.1|WP_046858986.1|1429376_1431527_-|NTPase
MDSEKYSSDSPVRTVSEDRFSRSTFSARVANVISERQEPSSITIGLYGPWGDGKTSVLNFIEESIKENGSAITVRFNPWLFGSVESLLLGFFDVLADALDAKLITQGEKFKDILKKTAPGIASVAGAKGLGEAVGAFLHGPDIIELRNRIEKELEDSQKRILVIIDDVDRLEKSEIQALFKLVKLVADFRFTAYILAFDKDIVASSLSENYSGANGKSGEQFLEKIIQVPLHLPAVPAKDLRQFCFQGVDEALSTSGVELSEQQVQEFVRHFTLAFDENLTTPRKAKLYGNILMFSLPILKGEVNPVDLMLLEGLRTFAPELYEIVRKNKDSFVGTFHDSYHHNAEPEKQRIKDLIDGVLTKTGKVTSGYIELLKNMFPKLQAVYGNMHYGSDWYQKWNDGQRICAEGYFDRYFTYAVPKGDFPDAAISLLINTIEGTGGEISAESNPLHDVLTSDNSRVLIRKLRNRANSLNALQSTYLSLAVCQLASEYPNPESMFGWDDPHTQAAMLVSDLVQKLEKKNRVDHVVRCIRQTTTSAFQLEIFKWLRKEEDDKPEKDAFSTEEVAEIGLELADCLDNHLKSVNDITSGEKRILPHTFYILNQYSKKESIIKHISSILEKDKSAIVRLLDAYTPTAWGMETGISHKSDFERDQYNSLIRIFDPGYILKSIESFLGNIPDDQENYPRDFERNDRSIVLHQFVWIHRRVLLEKDEQKA
>NZ_CP011412.1|WP_052761351.1|1431657_1432554_-|hypothetical-protein
MKNYDVQFELSYEGNDSDGHEIDMYDVSQALIGFQRSLAITTHLILNGKVIVQAPSLKGAKIYTFPSEEGSWKVKAGILVLGTAAYHVSTAPNNTPLGHLVYSAYDYVISQSLGFHVDYDKSLGQLYEEAEESKIELPKVRETQLDSVIEKCSTAITEIHRPIYKNKTAKTAKIYTNINNQDVPLNPTLSMDTFQYIIEEFTNDEVIEIRGFVSSYSSNTFKGRIYVPAQERSIPFVLAEPIRGESVIRDMVESLKANALRNYDEKPYEVFCKAQKITTKTGHLKSYKILAVSSVGFN
>NZ_CP011412.1|WP_046858988.1|1432953_1434426_-|HAMP-domain-containing-histidine-kinase
MLRTLYAKLAVGLVLLFVTIGLLYALISTTATKYYLQEVNQSFNKGLARNLVADRNLVEEGRLNQEALKETFRQYMVINPSIEIYLLDLEGKILSYSADPGKVKRNHVSLGPISAFLEGSEEYPLLGDDPRSHDGQKAFSVTPVPTSAHPEGYLYVVLRGEEFDSVDKMVRESYFLRLSGWAVVVSLGLGLLVGLIVLRLLTRRLHRLSSLMASFHQSNFNSHQPYLLEQKQPSDEVDRLGLTFDQMAEHIQQQLEQLKEQDSLRRKLVAQVSHDLRTPLASMLGYLESLELKGETMAKTERQEYTAIALRQARRLSRQVAELFELASLDARETQPHCEPFAAAELVQDVVQKYQLRAEQQQIQLTMNPPPALPFVYADIGLTERVLENLIENAFTHTGEGGRIELDLSVEQNGVAIAVKDTGCGISPEELPHIFDPFYQSAKKRVSGQHAGLGLAIAKRIVTLQQGEIRVDSTPDNGSIFRFILPLVQG
>NZ_CP011412.1|WP_046858989.1|1434419_1435127_-|response-regulator-transcription-factor
MTHQVLIVEDDPDIARLVQLHLNDIDCRADIIGDGNAAVTAFHKGHYDLVVLDLMLPGLDGLAVCREIRNAEGYVPILMLTAKSSELDRVVGLEMGADDYLTKPFSVLELLARIKALFRRTEALSAAKKQQPAQAIIDRGDIVIDVTRHQVRVRGEPVELTAREFDLLLHFASNPGSVYSRIQLLDSVWGYNHEGYEHTVNTHINRLRTKIEADPANPQYILTVWGVGYKFAETC
>NZ_CP011412.1|WP_046858990.1|1435302_1435557_-|hypothetical-protein
MLKTCSMALLLSATGAAVAGNMVTDSAGHPVMGVSQPMMADKMDQKPMMHDKMDKMDKMDKKPMMDHKMDSMDKKPMMDDKMKK
>NZ_CP011412.1|WP_046858991.1|1435775_1440602_-|NAD-glutamate-dehydrogenase
MTIHKGNTLLQQMLDNLASYSDARFNKQDRAQIEQLLGFYYRHIPVSDLESTPIADLVGAVIAHWQLLKERNRDGPTVRVYNPRFEQHGWQSPHTIIEIVTVDRVFLVDSLSMGLNRMGLTIHLTIHPLVRTVRDDAGELREIKPLSKEGGEVESLIHFQVDKQVAPEVLQAIEKMIRNVIRDVTYANADWLPMKERTETIREILDTATLPVDVTEQAELSAFLKWISDDHFTFLAYCEFDLQEVDGTATLRLDKASQLGLFRESCLNEQEAGKVIPVDGEAYMATQDFLVVTKSNIRSTVHRPAYMDFIGIKRHDREGRVNGLYCLLGLFTSVAYNSQPKDIPLLRQKTREVINRSGLSRYSHSGKALENILTTLPRDALFQTSVDDLEELAMGILGLQERQRTRLFVTRDLFRRFYSCLIYLPKERHSRELRLRIQKVLMTAMDGTEVEFSTLFTESTLARIHMIIHTSPSSEMECSLEELEAMVVNATTTWHDELRVALIEQYGEERGAKYNKRYANAFPSGFREDYYPRTAATDVARIEQARQSGHLDLSFYRPILESSKYVHCRLYSADNPVPLSNVIPILEHMGLTVFGERPYRVRHPSGPVWIHDFSMKYSSGQDEFSDEISQLFHEAFLKVWEGEVENDGFNQLVLGAGLNWKEVVLLRAYARYFKQIKFPFSRSYIIDSLTRNTEITRLLVELFTVKFNPRRKAKNRQLDAILQKIETLLESVASLDQDRILRSYVNIIQATLRTNFYQQDADGNSKSYISFKVDPRQVGGMPLPMPMFEIFVFSARMEGVHLRGGKVARGGLRWSDRMEDFRTEVLGLMKAQMVKNTVIVPVGSKGGFIVKRPLDGLAREAMMEEVVYCYRTLLQGMLDITDNLKDGAVVPPVDVVRYDEDDPYLVVAADKGTASFSDIANGVAASYGYWLGDAFASGGSVGYDHKKMGITARGAWESVKRNFRELGIDIQSTDFRVLGIGDMSGDVFGNGMLLSRHIKLVAAFNHLHIFLDPDPDPEVSFKERKRLFKLPRSNWTDYDKKLISKGGGVYSRSAKSITLTDEVKAMTGAKVDRMTPTELINLLLKSPVDLIWNGGIGTYIKSELESHEDVGDKANDGLRVNGNELRCKVVGEGGNLGVTQLGRIEFASKGGLIYTDAIDNSAGVDCSDHEVNIKILLGQIVANGDMTEKQRNKLLAEMTDEVARLVLMDNYAQTQSISMIVSNAADRLNEQARFIDYLETEGRLNRELEFLPSKKVIAERKAAKQGLTKPEVAVLLAYSKMTYFEALIHSDIPDDPFLETELMEYFPKVLGERFSKEMKAHQLKREIISTHLTNSIVEKIGPGFGYRMREEMGANIAGVTRAYLAASKIFSIDDLWRSIEALDNQVAASVQMEMMRMIAHLIEQSVVWILRARHDRVVVRDLVDYFQDGVQELIELMPKPLAAKDRLVLNRQIKYYLNAGVPREVAQQVSRIVMLSAAMDLVEVAKLRGQKIQTVGSVYYNLGSTLEFHWVREQISKLAEQTHWHSMAKTRLIDTLNKHQRDLTSQILVSVKKQKSARKMIEQWAEQYHFAYDRHLKTIADLKARTSVDFAMMSVVVAGVGGLLKSEV
>NZ_CP011412.1|WP_046858992.1|1440972_1441284_-|hypothetical-protein
MVNSIGSNFFDPGIARALAPAQPASAAEESLHRHDQPVTARAVVAVGEPRIGLENRAGLLYQHNLADDGINAKTRQALRAYRTLEDAEEREQVSRMLGVDEYA
>NZ_CP011412.1|WP_046858993.1|1441410_1442007_-|recombination-protein-RecR
MTNRPLLEELMEALRCLPGVGPKSAQRMAFYLLERDREGGRQLSRVLGESMERIGHCSRCRTLSETDICSLCSNPRRDDGQICVVETPSEVVAIEQATDYRGRYFVLGGHLSPLDGIGPREIGLDLFERRLAEGNIQELILATNPTVEGEATAHYIGEMARARGVRVTRIAHGVPLGGDLEYVDGGTLSHAFSGRREF

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Crispr_ID: NZ_CP011412_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011412_3

3352908-3354724

TypeII

Consensus_repeat	Method
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	CRISPRCasFinder
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	CRT
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	PILER-CR

27 spacers

cas2,cas1,cas9

The CRISPR arrays of NZ_CP011412_3

>merge|NZ_CP011412|3|3352908-3354724|CRISPRCasFinder,CRT,PILER-CR
GGTGGCGATCCCTCTCTCACCCCGGATGACTACAATAGCTGGGGCGAGATTCGCGTGCCTGCATTTGTTGTAGCTCCCTCTCTCACCCCGGATGACTACAATGGTGTCGAGGATCTGCGCATCCGTCCGAAGGTTGTAGTTCCCTCTCTCACCCCGGATGACTACAATTCGTGCTGATAGCTCGCCTGCCGCATTTCGGTTGTAGTTCCCTCTCTCACCCCGGATGACTACAATCATTGCTCTGGGCATGGATGTCGATGTCGAGTTGTAGTTCCCTCTCTCACCCCGGATGACTACAATCCAGTGCTACAGGCCAGCATGACGCTGACTGTTGTAGTTCCCTCTCTCACCCCGGATGACTACAATACCTCGTAGTGGATGGCTTCAACAATCATGGTTGTAGTTCCCTCTCTCACCCCGGATGACTACAATAGGAGCCAGAGGGCCGTGACAGACCAGCAGGTTGTAGTTCCCTCTCTCACCCCGGATGACTACAATTGCGGCCTCGTCAATCACGACGATGCCCTGGTTGTAGTTCCCTCTCTCACCCCGGATGACTACAATTTAAAATACCTAGCGAGTGAGTATAAGACAGTTGTAGTTCCCTCTCTCACCCCGGATGACTACAATTCGCCAACTGGCAGCGCCACCAGCGGATCAGTTGTAGTTCCCTCTCTCACCCCGGATGACTACAATTCAACGACCGCGACCCACAGAAAGAGATCCGTTGTAGTTCCCTCTCTCCCCCCGGATGACTACAATTAATATACGTCCGGTCGGTCGTTGGCACGAGTTGTAGTTCCCTCTCTCACCCCGGATGACTACAATGAAAGCTGGCCCGGATCCGGATGCCACCGAGTTGTAGTTCCCTCTCTCACCCCGGATGACTACAATGCACCGTTGGACGGCTACACCACGTTTGTGGTTGTAGTTCCCTCTCTCACCCCGGATGACTACAATATGACCGCCTCAAACGTATCGGTAATGGAAGTTGTAGTTCCCTCTCTCACCCCGGATGACTACAATGAGTGGGATGTGTTGGCGGCGCTGTACCGCGTTGTAGTTCCCTCTCTCACCCCGGATGACTACAATCGCCGACGGTCCGATTGCCGAGCTGAATTGTTGTAGTTCCCTCTCTCACCCCGGATGACTACAATACTGATGAAGAGGTGGTGATTGCCGGAGGAGTTGTAGTTCCCTCTCTCACCCCGGATGACTACAATAAGCTCTGTGACTACCTGATGCGCAATAAAGTTGTAGTTCCCTCTCTCACCCCGGATGACTACAATAGGTGTGCGCACTATGCCTGGATGGGCATGGTTGTAGTTCCCTCTCTCACCCCGGATGACTACAATGAACGGCGTGACGCCCTGGTGCAGCGGCTGGTTGTAGTTCCCTCTCTCACCCCGGATGACTACAATATGCGTTGGTGGCGTTCTCTCAGGCTAATCGTTGTAGTTCCCTCTCTCACCCCGGATGACTACAATTTGGTATAGATTACTTAATGCACCTGGACTGTTGTAGTTCCCTCTCTCACCCCGGATGACTACAATCGCTCAATCCACACAGGAGAACCCAATGGAGTTGTAGTTCCCTCTCTCACCCCGGATGACTACAATTGATCTAGGTTAAATACCCCAGGTCCCCAAGTTGTAGTTCCCTCTCTCACCCCGGATGACTACAATTGTTGTTCGTCTGCCCGGTGTCGAGATCGTGTTGTAGTTCCCTCTCTCACCCCGGATGACTACAATAAACAGCGCTTAACTGCTTCTCGCGATCCAGTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT

>NZ_CP011412|3|3|3352908-3354724|CRISPRCasFinder
GGTGGCGATCCCTCTCTCACCCCGGATGACTACAAT	AGCTGGGGCGAGATTCGCGTGCCTGCATTT
GTTGTAGCTCCCTCTCTCACCCCGGATGACTACAAT	GGTGTCGAGGATCTGCGCATCCGTCCGAAG
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	TCGTGCTGATAGCTCGCCTGCCGCATTTCG
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	CATTGCTCTGGGCATGGATGTCGATGTCGA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	CCAGTGCTACAGGCCAGCATGACGCTGACT
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	ACCTCGTAGTGGATGGCTTCAACAATCATG
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	AGGAGCCAGAGGGCCGTGACAGACCAGCAG
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	TGCGGCCTCGTCAATCACGACGATGCCCTG
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	TTAAAATACCTAGCGAGTGAGTATAAGACA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	TCGCCAACTGGCAGCGCCACCAGCGGATCA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	TCAACGACCGCGACCCACAGAAAGAGATCC
GTTGTAGTTCCCTCTCTCCCCCCGGATGACTACAAT	TAATATACGTCCGGTCGGTCGTTGGCACGA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	GAAAGCTGGCCCGGATCCGGATGCCACCGA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	GCACCGTTGGACGGCTACACCACGTTTGTG
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	ATGACCGCCTCAAACGTATCGGTAATGGAA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	GAGTGGGATGTGTTGGCGGCGCTGTACCGC
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	CGCCGACGGTCCGATTGCCGAGCTGAATT
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	ACTGATGAAGAGGTGGTGATTGCCGGAGGA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	AAGCTCTGTGACTACCTGATGCGCAATAAA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	AGGTGTGCGCACTATGCCTGGATGGGCATG
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	GAACGGCGTGACGCCCTGGTGCAGCGGCTG
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	ATGCGTTGGTGGCGTTCTCTCAGGCTAATC
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	TTGGTATAGATTACTTAATGCACCTGGACT
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	CGCTCAATCCACACAGGAGAACCCAATGGA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	TGATCTAGGTTAAATACCCCAGGTCCCCAA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	TGTTGTTCGTCTGCCCGGTGTCGAGATCGT
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	AAACAGCGCTTAACTGCTTCTCGCGATCCA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT

>NZ_CP011412|3|1|3352908-3354724|CRT
GGTGGCGATCCCTCTCTCACCCCGGATGACTACAAT	AGCTGGGGCGAGATTCGCGTGCCTGCATTT
GTTGTAGCTCCCTCTCTCACCCCGGATGACTACAAT	GGTGTCGAGGATCTGCGCATCCGTCCGAAG
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	TCGTGCTGATAGCTCGCCTGCCGCATTTCG
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	CATTGCTCTGGGCATGGATGTCGATGTCGA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	CCAGTGCTACAGGCCAGCATGACGCTGACT
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	ACCTCGTAGTGGATGGCTTCAACAATCATG
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	AGGAGCCAGAGGGCCGTGACAGACCAGCAG
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	TGCGGCCTCGTCAATCACGACGATGCCCTG
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	TTAAAATACCTAGCGAGTGAGTATAAGACA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	TCGCCAACTGGCAGCGCCACCAGCGGATCA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	TCAACGACCGCGACCCACAGAAAGAGATCC
GTTGTAGTTCCCTCTCTCCCCCCGGATGACTACAAT	TAATATACGTCCGGTCGGTCGTTGGCACGA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	GAAAGCTGGCCCGGATCCGGATGCCACCGA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	GCACCGTTGGACGGCTACACCACGTTTGTG
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	ATGACCGCCTCAAACGTATCGGTAATGGAA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	GAGTGGGATGTGTTGGCGGCGCTGTACCGC
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	CGCCGACGGTCCGATTGCCGAGCTGAATT
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	ACTGATGAAGAGGTGGTGATTGCCGGAGGA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	AAGCTCTGTGACTACCTGATGCGCAATAAA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	AGGTGTGCGCACTATGCCTGGATGGGCATG
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	GAACGGCGTGACGCCCTGGTGCAGCGGCTG
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	ATGCGTTGGTGGCGTTCTCTCAGGCTAATC
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	TTGGTATAGATTACTTAATGCACCTGGACT
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	CGCTCAATCCACACAGGAGAACCCAATGGA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	TGATCTAGGTTAAATACCCCAGGTCCCCAA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	TGTTGTTCGTCTGCCCGGTGTCGAGATCGT
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	AAACAGCGCTTAACTGCTTCTCGCGATCCA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT

>NZ_CP011412|3|1|3352974-3354724|PILER-CR
GTTGTAGCTCCCTCTCTCACCCCGGATGACTACAAT	GGTGTCGAGGATCTGCGCATCCGTCCGAAG
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	TCGTGCTGATAGCTCGCCTGCCGCATTTCG
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	CATTGCTCTGGGCATGGATGTCGATGTCGA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	CCAGTGCTACAGGCCAGCATGACGCTGACT
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	ACCTCGTAGTGGATGGCTTCAACAATCATG
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	AGGAGCCAGAGGGCCGTGACAGACCAGCAG
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	TGCGGCCTCGTCAATCACGACGATGCCCTG
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	TTAAAATACCTAGCGAGTGAGTATAAGACA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	TCGCCAACTGGCAGCGCCACCAGCGGATCA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	TCAACGACCGCGACCCACAGAAAGAGATCC
GTTGTAGTTCCCTCTCTCCCCCCGGATGACTACAAT	TAATATACGTCCGGTCGGTCGTTGGCACGA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	GAAAGCTGGCCCGGATCCGGATGCCACCGA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	GCACCGTTGGACGGCTACACCACGTTTGTG
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	ATGACCGCCTCAAACGTATCGGTAATGGAA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	GAGTGGGATGTGTTGGCGGCGCTGTACCGC
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	CGCCGACGGTCCGATTGCCGAGCTGAATT
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	ACTGATGAAGAGGTGGTGATTGCCGGAGGA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	AAGCTCTGTGACTACCTGATGCGCAATAAA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	AGGTGTGCGCACTATGCCTGGATGGGCATG
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	GAACGGCGTGACGCCCTGGTGCAGCGGCTG
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	ATGCGTTGGTGGCGTTCTCTCAGGCTAATC
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	TTGGTATAGATTACTTAATGCACCTGGACT
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	CGCTCAATCCACACAGGAGAACCCAATGGA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	TGATCTAGGTTAAATACCCCAGGTCCCCAA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	TGTTGTTCGTCTGCCCGGTGTCGAGATCGT
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT	AAACAGCGCTTAACTGCTTCTCGCGATCCA
GTTGTAGTTCCCTCTCTCACCCCGGATGACTACAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011412.1\|WP_046860453.1\|3366195_3367437_-\|multifunctional-CCA-addition/repair-protein	unknown	unknown	gnl\|CDD\|182810
NZ_CP011412.1\|WP_082117267.1\|3349117_3350278_+\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|224481
NZ_CP011412.1\|WP_046860439.1\|3345078_3345294_-\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
NZ_CP011412.1\|WP_046860444.1\|3350282_3350972_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011412.1\|WP_046861365.1\|3345546_3346581_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585
NZ_CP011412.1\|WP_046860441.1\|3347699_3348206_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|376515
NZ_CP011412.1\|WP_046860446.1\|3352133_3352826_+\|DUF2461-domain-containing-protein	unknown	unknown	gnl\|CDD\|274138
NZ_CP011412.1\|WP_046861366.1\|3347341_3347698_+\|dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|214902
NZ_CP011412.1\|WP_046860452.1\|3361580_3361808_-\|DUF3820-family-protein	unknown	unknown	gnl\|CDD\|378970
NZ_CP011412.1\|WP_046860451.1\|3361004_3361571_+\|plasmid-pRiA4b-ORF-3-family-protein	unknown	unknown	gnl\|CDD\|377943
NZ_CP011412.1\|WP_082117179.1\|3363349_3364534_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|367519
NZ_CP011412.1\|WP_046860447.1\|3354787_3355120_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP011412.1\|WP_046860450.1\|3359656_3360820_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011412.1\|WP_052761275.1\|3364548_3366078_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP011412.1\|WP_046860442.1\|3348213_3348957_-\|pteridine-reductase	unknown	unknown	gnl\|CDD\|181668
NZ_CP011412.1\|WP_082117178.1\|3361846_3363241_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|236877
NZ_CP011412.1\|WP_046860449.1\|3356042_3359249_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NZ_CP011412.1\|WP_046860440.1\|3346616_3347201_-\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	unknown	unknown	gnl\|CDD\|234691
NZ_CP011412.1\|WP_046860445.1\|3351118_3352042_+\|AEC-family-transporter	unknown	unknown	gnl\|CDD\|223751
NZ_CP011412.1\|WP_046860448.1\|3355126_3356038_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694

Protein	Function_ID	Function_description	E-value
NZ_CP011412.1\|WP_046860453.1\|3366195_3367437_-\|multifunctional-CCA-addition/repair-protein	gnl\|CDD\|182810	PRK10885, cca, multifunctional CCA addition/repair protein.	0
NZ_CP011412.1\|WP_082117267.1\|3349117_3350278_+\|SAM-dependent-methyltransferase	gnl\|CDD\|224481	COG1565, COG1565, Uncharacterized conserved protein [Function unknown].	3.53575e-111
NZ_CP011412.1\|WP_046860439.1\|3345078_3345294_-\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	5.9983e-17
NZ_CP011412.1\|WP_046860451.1\|3361004_3361571_+\|plasmid-pRiA4b-ORF-3-family-protein	gnl\|CDD\|377943	pfam07929, PRiA4_ORF3, Plasmid pRiA4b ORF-3-like protein. Members of this family are similar to the protein product of ORF-3 found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumorigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process. Other proteins found in this family are annotated as being putative TnpR resolvases, but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor and in fact carries a LexA DNA binding domain (pfam01726), but no references were found to expand on this.	7.04334e-74
NZ_CP011412.1\|WP_046861365.1\|3345546_3346581_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	0
NZ_CP011412.1\|WP_046860441.1\|3347699_3348206_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|376515	pfam01288, HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK).	4.30676e-39
NZ_CP011412.1\|WP_046860446.1\|3352133_3352826_+\|DUF2461-domain-containing-protein	gnl\|CDD\|274138	TIGR02453, conserved_hypothetical_protein, TIGR02453 family protein. Members of this family are widely (though sparsely) distributed bacterial proteins about 230 residues in length. All members have a motif RxxRDxRFxxx[DN]KxxY. The function of this protein family is unknown. In several fungi, this model identifies a conserved region of a longer protein. Therefore, it may be incorrect to speculate that all members share a common function.	3.06292e-88
NZ_CP011412.1\|WP_046861366.1\|3347341_3347698_+\|dihydroneopterin-aldolase	gnl\|CDD\|214902	smart00905, FolB, Dihydroneopterin aldolase. Dihydroneopterin aldolase catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. In the opportunistic pathogen Pneumocystis carinii, dihydroneopterin aldolase function is expressed as the N-terminal portion of the multifunctional folic acid synthesis protein (Fas). This region encompasses two domains, FasA and FasB, which are 27% amino acid identical. FasA and FasB also share significant amino acid sequence similarity with bacterial dihydroneopterin aldolases. This region consists of two tandem sequences each homologous to folB and which form tetramers.	3.33646e-40
NZ_CP011412.1\|WP_046860452.1\|3361580_3361808_-\|DUF3820-family-protein	gnl\|CDD\|378970	pfam12843, QSregVF_b, Putative quorum-sensing-regulated virulence factor. QSregVF_b is a family of short Pseudomonas proteins that are potential virulence factors. The structure of UniProtKB:Q9HY15 a secreted protein has been solved and deposited as Structure 3npd, from pfam13652. It is predicted that these two adjacent proteins form a single transcriptional unit based on the prediction that together they interact with their adjacent protein PotD, which is the putrescine-binding periplasmic protein in the polyamine uptake system comprising PotABCD. These two adjacent proteins are predicted to be quroum-sensing-regulated virulence factors.	4.40588e-36
NZ_CP011412.1\|WP_082117179.1\|3363349_3364534_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|367519	pfam03486, HI0933_like, HI0933-like protein.	0
NZ_CP011412.1\|WP_046860447.1\|3354787_3355120_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.46769e-40
NZ_CP011412.1\|WP_052761275.1\|3364548_3366078_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.50866e-102
NZ_CP011412.1\|WP_046860442.1\|3348213_3348957_-\|pteridine-reductase	gnl\|CDD\|181668	PRK09135, PRK09135, pteridine reductase; Provisional.	9.44187e-133
NZ_CP011412.1\|WP_082117178.1\|3361846_3363241_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|236877	PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.	3.68427e-150
NZ_CP011412.1\|WP_046860449.1\|3356042_3359249_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_CP011412.1\|WP_046860440.1\|3346616_3347201_-\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	gnl\|CDD\|234691	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY.	3.47625e-77
NZ_CP011412.1\|WP_046860445.1\|3351118_3352042_+\|AEC-family-transporter	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	5.6826e-43
NZ_CP011412.1\|WP_046860448.1\|3355126_3356038_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	1.2238e-98

>NZ_CP011412.1|WP_046860446.1|3352133_3352826_+|DUF2461-domain-containing-protein
MMAPFDGFPQDTLRFLSELKANNNKAWFHDNKARYEALVREPALAFIESLAPGLAEISPHFRAIPKKVGGSLMRVYRDTRFARDKTPYKTNIGIQFRHELGKDVHAPGFYLHIEPENCFVGAGIWRPDGKTLNQIRSFMDDNPAAWKKALQSPGFAGQFSLDGDTLKRPPRGYAADHPLIEDLKRKDFIAFKPIPAEAIHSADLCRSVLQDFRCADALMGYLCTAINVNY
>NZ_CP011412.1|WP_046860445.1|3351118_3352042_+|AEC-family-transporter
MIDVFNALLPVVAIILLGMLLRRTTLFNDESWLGMENLCYFVLFPALLVKTLASARIASGELLLFSSLALFSILAMSLLLLLFQPLMRRLLGIDGPAFTSLFQGATRWHGFIALSIVGLLYGDEGVAYMAIIMAVIIPPLNIINVLVLARYAEGSSGLADVTRKLLKNPFIIGSVIGATLNLTGIGLPAQLFSLLDILGGGALGLGLLTVGAGLHFGLVLDHRLVVGFGVAIRLLGMPLLMFLGAWMFGIDGVPRTVAVIAAAVPTGSSCYILARQMGGDAPLMANLITVQVVMAVVTLPVMIWLSV
>NZ_CP011412.1|WP_046860444.1|3350282_3350972_+|hypothetical-protein
MLLILSLLLSGCGSAPDRDSPIKTRQFQVDDIARSDVDMVAESQLRFTMEYLQELMEKLYRRNPREWRAGGAESLEQAVERVFGNGRTDQFPELQQKRGTDAVMLAFDEAYQGDRVLAFVEGLRGMILEAHNGKQSFYLTDELDPQKLYNAARNLEIAAWKLSHTRDSAGRLFLVSNQTEGPVINLSYERLFGKLIALQDGMARVIAQSTNRRIKTIIQSVASAVFMPI
>NZ_CP011412.1|WP_082117267.1|3349117_3350278_+|SAM-dependent-methyltransferase
MPEPDAEARAHSLQLVSLIRDEIVAAGGRIPFDRYMELALYAPGLGYYTAGSRKFGGAGDFVTAPEISPLFARCLARQCRQVLEDLGGGVILEVGAGSGVLAAELLLELERLNCLPERYLILDLSPDLRQRQRETLEQRAAHLVERVDWLTAFPDTCLSGVVIANELLDAMPVHRFRYADQVLQEQYVSWNGEQFQLVWDAPASADFARQLAAPLARLAGVDEFESEINLRAGPWLAALAGCLERGAALLIDYGHSGAEYYHPARNRGTLMCHYRHRAHSDPLVYPGLQDITAHVDFSAIAEAAVASGFNVVGYTTQAFFLMGSGLDELVAASDPNDVAAHLDLVQGVKQLTLPTEMGERFKVLGLTRGWDGPLNGFALRDMRDRL
>NZ_CP011412.1|WP_046860442.1|3348213_3348957_-|pteridine-reductase
MSQDHPPVALITGAAQRIGATIARHLHQRGLAIALHYHRSQAPAAALKEELEQARPDSVQLIQADLNESRQLARIIQQVEQWRGRLDLLVNNASSFYPTPLSQLTGEQWDDLMGTNLKAPFFLAIEAAPLLRASRGAIINLVDIHAERPLKNHPVYSMAKAGNAMMVKSLARELGPEIRVNGVAPGAILWPEQAMSDPVKQEILARTALERTGTPADIAGAVCFLALEAPYVTGQILAVDGGRTVQQ
>NZ_CP011412.1|WP_046860441.1|3347699_3348206_+|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MARVWISLGSNIDRERNIRAALRDLQAQFGHLLISRVYESEAVGFSGDAFYNLVVGADTELPVAELVQLFRTIESTHGRTREGGSFAPRTLDIDLLTYGDRIVDLDGMHLPRDEITRYAFVLLPLTELAGDSRHPELGQTYNEIWQGFDRDSQRLWPVPFDTGLTPDL
>NZ_CP011412.1|WP_046861366.1|3347341_3347698_+|dihydroneopterin-aldolase
MDIVFLRDLRIDTVIGIYDWEREIKQTVVLDIDMSTDVKRAAASEDIADAVDYKAVSKRLISFVQESRFQLVETLAERCAEIIRQEFDVRWVRLTVNKIGAVSAATDVGVIIERGERF
>NZ_CP011412.1|WP_046860440.1|3346616_3347201_-|glycerol-3-phosphate-1-O-acyltransferase-PlsY
MINALLIIAAYLLGSLSSAIIVCRLMGLPDPRTQGSNNPGATNVLRLGGKRAAAITLLGDSLKGFLPVLAAKLIGVPPLVLAAVAMAAFLGHLYPLFFRFQGGKGVATALGVQFGIHWQIGGLVALIWLLMAKGLNISSLAALVSMALAPLVVWLIWPVPALIGMQIVMSLILFWRHRSNIRNLLAGSEGKIKQ
>NZ_CP011412.1|WP_046861365.1|3345546_3346581_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MRVLGIETSCDETGLAIYDSEQGLLGHVLHSQIDLHAVYGGVVPELASRDHVRKTLPLLHNLLAQTGLAKSDIDGVAYTAGPGLVGALLVGTAIGRTLAWAWGVPAVGVHHMEGHLLAPMLEPERPEFPFVALLVSGGHTQLVEVKGIGQYRLLGESLDDAAGEAFDKTAKMMGLPYPGGPELAALALSGDPKRFRFPRPMTDRPGLDFSFSGLKTFALNTLQREITPQDSEATKQQTRADIARAFEEAVVDTLVIKCRRAVRDSGAATLVLAGGVSANRQLRERMQVAMGKEGARVFYPRTEFCTDNGAMIAYAGWQRLRQGAHEDLGFGVRARWPMDSLAGY
>NZ_CP011412.1|WP_046860439.1|3345078_3345294_-|30S-ribosomal-protein-S21
MPNVRVKENEPFEVAMRRFKRGCEKAGVLAEVRRREHYEKPTTERKRKAAAAVKRHLKKISRENRKWDRQY
>NZ_CP011412.1|WP_046860447.1|3354787_3355120_-|CRISPR-associated-endonuclease-Cas2
MSQETRRFMRLLVFFDLPTITREDKRAYTLFRRFLLKDGYDMIQWSVYGRVINGFDNMETHLKRLSANLPPEGSVRCLQVSEKQFVQMKLLVGEPKKQEKTVSSAQLVLL
>NZ_CP011412.1|WP_046860448.1|3355126_3356038_-|type-II-CRISPR-associated-endonuclease-Cas1
MAWRSVMISRPSYLKLRHGALKVVQDDGEVSIPLEDIAVLLIDCPQITLSAQLLSACAERQIAVITVGLNHHPNGVLIPYLPHSRALKAMKMQLAMSLPQRKQLWRSIVKQKIRNQALVLQHMGRTKEGSKLLALIKEVKSGDSGNAEAQASQLYFPALFGGGFTRKQIRFHNAALNYGYAIIRAALARNLVCYGFIAAFGLHHRNEQNSFNLADDLIEPFRPLLDAYLLKHFPHEEDDQLLPSHKSTLVNILNQDIPMIDVDGVMTRSTVLNATESMVVSLTQRLHDGGHKLHLPLFESTQM
>NZ_CP011412.1|WP_046860449.1|3356042_3359249_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MPKSAKPQQAYTLGLDIGIASVGAALLGQQHIIGLHVRTFDRAETAKEGEPLNKIRRDARLTRRRLQRRAHRLLRLRRLFKRHNLIPDTDTSTFISGQSPWELRAQGLDRQLTSAEWTTVLYHIVKHRGFHSNRKSEVKTDEKAGQMLSGVNQNQALLKQSGLRTMGELAARHEAFREAKRNKKGAYNHTFSRHDLEDELHLLFSRQRELGNPYATPELEDAVHTLLMQRRPALSGTNLLKMVGHCTLEPDEFRAPKASYTAERFIWLTKLNNLRVSGSGETRPLNESERQALLSKPFSQSKLTYKQVRKILELPDNIRFVGLHYHPAQDNGKSPENRVFFEAKAFHALRNVYKKAGLNLEWQRDSQNPEKLDNITYALTVFKEDKEAKQWLIEKGVEASVIEAVLNESFSEFVRLSIKALRKIIPHMEIGHRYDEAVKLAGYSHHSHLPQPSKTPYIPRFSKQSIANPVVSRALNQARKLVNAIVREYGPPDAVHIELARDLNKPFDERRKIEKDQEKYQKDKARDIETFQENFGFTPKGLQLTKWRLYREQSGKCAYSLKPLDINRLFEDGYVEIDHALPYSRSFNDGMNNKVLTLTTENRNKGNQTPYEYLDGASNSAQWRNFVAWVNSNKSYRASKQRNLLRKDFAAQAATEFRERHLTDTRYIAREFKRMVETHLKLNKPNQRCVVVSGQLTAYLRARWGLIKVRENGDLHHALDAAVVAACSHAMVKRLADYSRRGELQYARGHHFDPETGEIIDINALRKLDDHFPQPWTDFRRELLAWLSPDPAQQLKNLAYYTDERLKQVKPIRVSRAPTRRGLGAAHQETIRSAKYLGENRSTVKTPLEKLKLKDIPNIVGYEDPRNHQLIQAISQRLTEHGDDGKKAFKEPLYKPGNNKSTAPVVRSVKLFTVQKSGIPVRGGIANNGNMVRVDIFTKKERYFAVPVYVSDAARNELPNKAVARGKDGWIDIDDSFSFLFSLYPNDWVSVVVKPHEAPCEGYYAGLDISTGAIHIWAHDRNRSVGKNGLMRSIGIKTAHSVEKYHVDLLGNLYRVVHETRKPLRAGK
>NZ_CP011412.1|WP_046860450.1|3359656_3360820_+|hypothetical-protein
MQSGPREIETPFRPIPLEVPEGMKPNEFFNSTENLNDLVHNNGLLVNPENLLLYRKALGHSNEFDASIIYNTSNLILDPLGRPVRRTQVPDRVKHVWNRMNQVVIAYMLEQYPDPDEALILAGEASLDATWPLTSPGVPSIRMLHNHFIVFDKRQLRQAPMADPDNPNLTDGGQHSLFQAYMNDVYREFFSQLDLHILRPVTDGSCRLELTGYPQGLPSWEVQGGVEILKSIRFWREYDAILMGFIDFYRTFFTQVSTRNAPIPKDAYFPEQIENTLLYNNDFLRVAKKVRDQCVQDAKYANAIRWQPAFKQLLYRDDSGRLIVTISQNSIGNAITELLGVVVRRVPDAEAYEAKEPQLIERLLEVRRRLVEADLGEALSTPYWGAE
>NZ_CP011412.1|WP_046860451.1|3361004_3361571_+|plasmid-pRiA4b-ORF-3-family-protein
MDYLRKVYQLNISLLGVVPEVWRQVRVADSDTLASLHETLQVAMGWTNIHMHMFIKGQEKYGVPDDQFPDDTHNEQQVRLRQVLKKPGDSLLYIYDFGDAWEHRVVLEEVLPYDLSQRLPTCSGGARACPPEDVGGPPGYDEFLEAIVDRSHPEHDYMVRWIGGEFSPELFDINLTNQLLRENHLHIV
>NZ_CP011412.1|WP_046860452.1|3361580_3361808_-|DUF3820-family-protein
MFDKQQLVKLAKLKMPFGKYQGTALIDLPEAYLIWFANRGFPEGELGQLMALTLEIKINGLESLIEPLKRIPTVH
>NZ_CP011412.1|WP_082117178.1|3361846_3363241_-|DEAD/DEAH-box-helicase
MDYNSGQFCSLATKVIPLLSSFPLHPRLLQTLDDLGLNQATPIQQQAIPVALERQDLIASAETGSGKTFAFLLPTLHHLLNTSAPESGTRVLILVPTRELGHQILKQGQKLIKGTRLQIGLITGGESFKYQRALFRKNPEMIVATPGRLLEHLEQGTPDFRDLEVLILDEADRMLDMGFSEDVLNITSQCNPARQTLLFSATLSHRGLKAITDTLLRDPVSISLNTVRDRHQNITQQIIPSDDKLHKQRQLAWLLLHETFDKALVFTNTRLQADALGPELRKQGVRAGVLHGDMGQDERNQIMALLRQGTIKVLVATDVAARGLDIKGVDLVINFDMARSGKDYVHRIGRTGRAGQPGLAISLVSHQEWNLMSGIERYLKHEFERRLIKEIAGKYRGPKRLKTSGKAAGGKKKTATDKPAKSGARKPKQRLRDRKNIGKRRKPSSNPGDSSPREAGHKPLTRKK
>NZ_CP011412.1|WP_082117179.1|3363349_3364534_+|NAD(P)/FAD-dependent-oxidoreductase
MKQYDVTIIGAGAAGLMCAATAAQRGRDVLLLDNSRKVGKKILMSGGGRCNFTNLYVGPDNYVCHNPHFCKSALSRYTQWDFIALVERYGIAYHERDHGQLFCDDSSRQILNMLLAECNQAGVTLRAGCEVLSISYDEQYHLTTSEGEFCSPSLVVATGGLSIPTMGSSGFGYAIARQFGLNVLPQRAGLVPFTFSDRMKVLTERLAGISLPVSMSTADRSFTEQLLFTHRGLSGPVALQLSNYWQAGEPIRLDLLPDLTADHWLLELKKAHPRGLLKNLLAKRLAKKLVIEWIRLEWPEWEERPMAEIPDRVLGQIGEQLNGWKLKPAGTEGYRTAEVTLGGVDTDELSSKTMACRHQPGLFFIGEVVDVTGHLGGFNFQWAWSSGYTAGQFA
>NZ_CP011412.1|WP_052761275.1|3364548_3366078_-|serine/threonine-protein-kinase
MNHSLQIKVPGYRIERILGRGGMATVYLATQMSLGRPVALKVLHDPDTPQFFERFFNEGRYIARLNHSNLIAIFDIGQGDGFYYIAMEYLPGGDLKARIMQGLKPSQALKILSRLASCLAYVHGEGVIHRDIKPSNILFRNDGTPVLTDFGIAKLIQTDNDLTVTGTVMGSPHYLSPELAQGIRRVDGRSDLYSLGIILYEMLTGRKPYTADSFAATLMAHIQHPIPKLPEQFAELQPLLEKLLAKKPEDRFQNGVELLMNLQAVRSRLKAEKANSAEPAQPRTPSPQTTRRRRLNGLAYGGLAGLTLLAGLGLVLGQRTAETPAAPPETVLEVPATAMQPVAVVAPADIQAEPPDSGESPTESEEQAEQLSELATPVEPEPQPEPEPQPVDPEIKQLLEKAGQRLASDRLSYPEGNSARFYYNAVLKKDPDNAEARRGMVKIANRYADLAQANINRGRTLAARRQISQGLSVQPRHERLIRMLNQLNRPTPTRSIETIFDRLNPQNQR
>NZ_CP011412.1|WP_046860453.1|3366195_3367437_-|multifunctional-CCA-addition/repair-protein
MDDSNSFSSHTYLVGGAVRDQLLGLPISDRDWLVTGVTAEQLAARGFHQVGRDFPVFLHPRSKEEYALPRGDIHGKTEQEQVCDDLMQRDLTINAIARAPDGHYIDPLNGQQDLQARRLRHTPTFRQDPIRVLRLARLAARLHPLGFRVAQQTRQLVAQMIRQGELDQLVPERVWAEILRALQDRDPVVFFQTLHELGALRVILPELDRLFGVPQPERHHPEIDTGLHCLMVLRQACALSTEPETRLAALLHDLGKGTTRPAEWPSHHGHEQRGAKLVEQLCDRLRIPNRFRDLSRRVAEFHTHSHRAFDLKPSTLLRTLLKIDGLRRPEQLEQFLIACEADARGRKGFEQQPYPQADWFRAARNAAAAVDTGALAASATDPQVIPELIFQARSRAIGQARKEWQTQQEGVIK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP011412_2	2.1\|1427223\|25\|NZ_CP011412\|CRISPRCasFinder	1427223-1427247	25	MN657042	Psychrobacter sp. strain ANT_P18B plasmid pA18BP1, complete sequence	2281-2305	3	0.88
NZ_CP011412_2	2.1\|1427223\|25\|NZ_CP011412\|CRISPRCasFinder	1427223-1427247	25	NC_021497	Lactobacillus reuteri I5007 plasmid pLRI05, complete sequence	3543-3567	4	0.84
NZ_CP011412_1	1.1\|515694\|26\|NZ_CP011412\|CRISPRCasFinder	515694-515719	26	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1071637-1071662	5	0.808
NZ_CP011412_3	3.8\|3353406\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353406-3353435	30	MN582099	Inoviridae sp. ctBZ32, complete genome	1991-2020	5	0.833
NZ_CP011412_3	3.10\|3353538\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353538-3353567	30	NZ_CP017424	Arthrobacter sp. ZXY-2 plasmid pZXY23, complete sequence	57608-57637	5	0.833
NZ_CP011412_3	3.21\|3354263\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3354263-3354292	30	NZ_CP032348	Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence	294390-294419	5	0.833
NZ_CP011412_3	3.21\|3354263\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3354263-3354292	30	NZ_CP032324	Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence	229648-229677	5	0.833
NZ_CP011412_2	2.1\|1427223\|25\|NZ_CP011412\|CRISPRCasFinder	1427223-1427247	25	NZ_CP040855	Lactobacillus johnsonii strain G2A plasmid unnamed1	38395-38419	6	0.76
NZ_CP011412_3	3.8\|3353406\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353406-3353435	30	NC_017805	Deinococcus gobiensis I-0 plasmid P1, complete sequence	82940-82969	6	0.8
NZ_CP011412_3	3.8\|3353406\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353406-3353435	30	NC_048782	Rhodococcus phage Sleepyhead, complete genome	955-984	6	0.8
NZ_CP011412_3	3.10\|3353538\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353538-3353567	30	NZ_CP030864	Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence	1338-1367	6	0.8
NZ_CP011412_3	3.10\|3353538\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353538-3353567	30	NZ_CP030864	Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence	560324-560353	6	0.8
NZ_CP011412_3	3.16\|3353934\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353934-3353963	30	NZ_CP032230	Streptomyces seoulensis strain KCTC 9819 plasmid unnamed	69402-69431	6	0.8
NZ_CP011412_3	3.17\|3354000\|29\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3354000-3354028	29	NZ_CP024308	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3a, complete sequence	317216-317244	6	0.793
NZ_CP011412_3	3.1\|3352944\|30\|NZ_CP011412\|CRISPRCasFinder,CRT	3352944-3352973	30	EU744250	Mycobacterium virus Pukovnik, complete genome	51510-51539	7	0.767
NZ_CP011412_3	3.1\|3352944\|30\|NZ_CP011412\|CRISPRCasFinder,CRT	3352944-3352973	30	MN703408	Mycobacterium phage Phaded, complete genome	52200-52229	7	0.767
NZ_CP011412_3	3.1\|3352944\|30\|NZ_CP011412\|CRISPRCasFinder,CRT	3352944-3352973	30	NC_031279	Mycobacterium phage Bactobuster, complete genome	50641-50670	7	0.767
NZ_CP011412_3	3.2\|3353010\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353010-3353039	30	NZ_CP015041	Rhodovulum sp. P5 plasmid pRGUI02, complete sequence	26923-26952	7	0.767
NZ_CP011412_3	3.2\|3353010\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353010-3353039	30	NZ_KP289281	Pseudomonas sp. EGD-AKN5 plasmid unnamed, complete sequence	103363-103392	7	0.767
NZ_CP011412_3	3.2\|3353010\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353010-3353039	30	NZ_CP013525	Rhizobium phaseoli strain R744 plasmid pRphaR744c, complete sequence	397583-397612	7	0.767
NZ_CP011412_3	3.2\|3353010\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353010-3353039	30	NZ_CP013554	Rhizobium phaseoli strain N931 plasmid pRphaN931b, complete sequence	421253-421282	7	0.767
NZ_CP011412_3	3.2\|3353010\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353010-3353039	30	NZ_CP013560	Rhizobium phaseoli strain N841 plasmid pRphaN841c, complete sequence	397651-397680	7	0.767
NZ_CP011412_3	3.2\|3353010\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353010-3353039	30	NZ_CP013577	Rhizobium phaseoli strain N671 plasmid pRphaN671c, complete sequence	404386-404415	7	0.767
NZ_CP011412_3	3.2\|3353010\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353010-3353039	30	NZ_CP013549	Rhizobium phaseoli strain R611 plasmid pRetR611b, complete sequence	403226-403255	7	0.767
NZ_CP011412_3	3.2\|3353010\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353010-3353039	30	NZ_CP013529	Rhizobium phaseoli strain R723 plasmid pRphaR723b, complete sequence	417624-417653	7	0.767
NZ_CP011412_3	3.2\|3353010\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353010-3353039	30	NZ_CP013534	Rhizobium phaseoli strain R650 plasmid pRphaR650b, complete sequence	403226-403255	7	0.767
NZ_CP011412_3	3.2\|3353010\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353010-3353039	30	NZ_CP013545	Rhizobium phaseoli strain R620 plasmid pRphaR620c, complete sequence	403218-403247	7	0.767
NZ_CP011412_3	3.2\|3353010\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353010-3353039	30	NZ_CP013565	Rhizobium phaseoli strain N831 plasmid pRphaN831b, complete sequence	421253-421282	7	0.767
NZ_CP011412_3	3.2\|3353010\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353010-3353039	30	NC_004956	Pseudomonas sp. ADP atrazine catabolic plasmid pADP-1, complete sequence	103363-103392	7	0.767
NZ_CP011412_3	3.2\|3353010\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353010-3353039	30	NZ_CP013582	Rhizobium phaseoli strain N261 plasmid pRphaN261b, complete sequence	417624-417653	7	0.767
NZ_CP011412_3	3.2\|3353010\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353010-3353039	30	NZ_CP013571	Rhizobium phaseoli strain N771 plasmid pRphaN771c, complete sequence	404386-404415	7	0.767
NZ_CP011412_3	3.2\|3353010\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353010-3353039	30	NC_010998	Rhizobium etli CIAT 652 plasmid pA, complete sequence	403859-403888	7	0.767
NZ_CP011412_3	3.4\|3353142\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353142-3353171	30	NZ_CP039965	Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence	37948-37977	7	0.767
NZ_CP011412_3	3.5\|3353208\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353208-3353237	30	NC_018859	Escherichia phage ECBP2, complete genome	64816-64845	7	0.767
NZ_CP011412_3	3.8\|3353406\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353406-3353435	30	NC_008203	Mycobacterium phage Che12, complete genome	44098-44127	7	0.767
NZ_CP011412_3	3.8\|3353406\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353406-3353435	30	DQ398043	Mycobacterium virus Che12, complete genome	44098-44127	7	0.767
NZ_CP011412_3	3.11\|3353604\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353604-3353633	30	NZ_CP022191	Yangia pacifica strain YSBP01 plasmid unnamed1, complete sequence	49445-49474	7	0.767
NZ_CP011412_3	3.13\|3353736\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353736-3353765	30	NZ_CP012477	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence	542302-542331	7	0.767
NZ_CP011412_3	3.16\|3353934\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353934-3353963	30	NZ_CP025613	Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence	121138-121167	7	0.767
NZ_CP011412_3	3.17\|3354000\|29\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3354000-3354028	29	NZ_CP049360	Deinococcus wulumuqiensis R12 plasmid unnamed3, complete sequence	686-714	7	0.759
NZ_CP011412_3	3.17\|3354000\|29\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3354000-3354028	29	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	581393-581421	7	0.759
NZ_CP011412_3	3.17\|3354000\|29\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3354000-3354028	29	NZ_CP012478	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed1, complete sequence	122977-123005	7	0.759
NZ_CP011412_3	3.17\|3354000\|29\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3354000-3354028	29	NC_017771	Deinococcus gobiensis I-0 plasmid P3, complete sequence	120936-120964	7	0.759
NZ_CP011412_3	3.18\|3354065\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3354065-3354094	30	NZ_CP009292	Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence	364958-364987	7	0.767
NZ_CP011412_3	3.21\|3354263\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3354263-3354292	30	NZ_CP041045	Paracoccus sp. AK26 plasmid pAK1, complete sequence	374855-374884	7	0.767
NZ_CP011412_3	3.21\|3354263\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3354263-3354292	30	KF626665	Phage Sano, complete genome	22912-22941	7	0.767
NZ_CP011412_3	3.24\|3354461\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3354461-3354490	30	NZ_CP020740	[Pseudomonas] mesoacidophila strain ATCC 31433 plasmid pATCC31433, complete sequence	9570-9599	7	0.767
NZ_CP011412_3	3.24\|3354461\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3354461-3354490	30	MH077580	Mycobacterium phage Melissauren88, complete genome	42541-42570	7	0.767
NZ_CP011412_3	3.27\|3354659\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3354659-3354688	30	MN184886	Erwinia phage pEp_SNUABM_08, complete genome	6871-6900	7	0.767
NZ_CP011412_3	3.2\|3353010\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353010-3353039	30	NZ_CP014515	Frondihabitans sp. PAMC 28766 strain SR6 plasmid 2, complete sequence	19655-19684	8	0.733
NZ_CP011412_3	3.2\|3353010\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353010-3353039	30	NZ_CP014514	Frondihabitans sp. PAMC 28766 strain SR6 plasmid 1, complete sequence	32739-32768	8	0.733
NZ_CP011412_3	3.2\|3353010\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353010-3353039	30	NZ_CP009431	Sphingopyxis macrogoltabida strain 203 plasmid unnamed, complete sequence	88299-88328	8	0.733
NZ_CP011412_3	3.2\|3353010\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353010-3353039	30	NZ_CP013588	Rhizobium phaseoli strain N161 plasmid pRphaN161c, complete sequence	397066-397095	8	0.733
NZ_CP011412_3	3.2\|3353010\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353010-3353039	30	NZ_CP013503	Rhizobium esperanzae strain N561 plasmid pRspN561c, complete sequence	490854-490883	8	0.733
NZ_CP011412_3	3.2\|3353010\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353010-3353039	30	NZ_CP013509	Rhizobium sp. N1341 plasmid pRspN1341d, complete sequence	490854-490883	8	0.733
NZ_CP011412_3	3.2\|3353010\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353010-3353039	30	NZ_CP013520	Rhizobium sp. N113 plasmid pRspN113c, complete sequence	490854-490883	8	0.733
NZ_CP011412_3	3.2\|3353010\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353010-3353039	30	NZ_CP013493	Rhizobium sp. N6212 plasmid pRspN6212c, complete sequence	490854-490883	8	0.733
NZ_CP011412_3	3.2\|3353010\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353010-3353039	30	NZ_CP013516	Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence	496464-496493	8	0.733
NZ_CP011412_3	3.2\|3353010\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353010-3353039	30	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	255949-255978	8	0.733
NZ_CP011412_3	3.2\|3353010\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353010-3353039	30	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1824478-1824507	8	0.733
NZ_CP011412_3	3.3\|3353076\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353076-3353105	30	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	395450-395479	8	0.733
NZ_CP011412_3	3.3\|3353076\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353076-3353105	30	NZ_CP024310	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence	685050-685079	8	0.733
NZ_CP011412_3	3.3\|3353076\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353076-3353105	30	NZ_CP023064	Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence	505492-505521	8	0.733
NZ_CP011412_3	3.4\|3353142\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353142-3353171	30	NZ_CP046100	Rhodococcus sp. AQ5-07 plasmid unnamed1, complete sequence	17287-17316	8	0.733
NZ_CP011412_3	3.5\|3353208\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353208-3353237	30	NC_011370	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence	263323-263352	8	0.733
NZ_CP011412_3	3.5\|3353208\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353208-3353237	30	MT446414	UNVERIFIED: Escherichia virus TH43, complete genome	61483-61512	8	0.733
NZ_CP011412_3	3.5\|3353208\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353208-3353237	30	LC553734	Escherichia phage EK010 DNA, complete sequence	12677-12706	8	0.733
NZ_CP011412_3	3.5\|3353208\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353208-3353237	30	MT446413	UNVERIFIED: Escherichia virus TH42, complete genome	16647-16676	8	0.733
NZ_CP011412_3	3.5\|3353208\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353208-3353237	30	MK310183	UNVERIFIED: Phage NC-B, complete genome	63324-63353	8	0.733
NZ_CP011412_3	3.8\|3353406\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353406-3353435	30	NZ_CP016283	Cryobacterium arcticum strain PAMC 27867 plasmid pP27867_1, complete sequence	88529-88558	8	0.733
NZ_CP011412_3	3.8\|3353406\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353406-3353435	30	MN657146	Cryobacterium sp. strain ANT_H28B plasmid pA28BH2, complete sequence	35337-35366	8	0.733
NZ_CP011412_3	3.8\|3353406\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353406-3353435	30	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	1582430-1582459	8	0.733
NZ_CP011412_3	3.10\|3353538\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353538-3353567	30	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	553302-553331	8	0.733
NZ_CP011412_3	3.10\|3353538\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353538-3353567	30	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	1664126-1664155	8	0.733
NZ_CP011412_3	3.10\|3353538\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353538-3353567	30	NZ_CP006990	Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence	454650-454679	8	0.733
NZ_CP011412_3	3.10\|3353538\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353538-3353567	30	NZ_CP020911	Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence	608748-608777	8	0.733
NZ_CP011412_3	3.10\|3353538\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353538-3353567	30	NC_021911	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence	518134-518163	8	0.733
NZ_CP011412_3	3.11\|3353604\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353604-3353633	30	NZ_CP020331	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence	37823-37852	8	0.733
NZ_CP011412_3	3.13\|3353736\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353736-3353765	30	NZ_CP045548	Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence	279186-279215	8	0.733
NZ_CP011412_3	3.14\|3353802\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353802-3353831	30	KX834009	Mycobacterium phage Goldilocks, complete genome	51617-51646	8	0.733
NZ_CP011412_3	3.14\|3353802\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353802-3353831	30	MK359320	Mycobacterium phage Cookies, complete genome	51520-51549	8	0.733
NZ_CP011412_3	3.14\|3353802\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353802-3353831	30	MN586051	Mycobacterium phage Myrale, complete genome	52482-52511	8	0.733
NZ_CP011412_3	3.14\|3353802\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353802-3353831	30	MK016502	Mycobacterium phage Pat3, complete genome	50592-50621	8	0.733
NZ_CP011412_3	3.14\|3353802\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353802-3353831	30	JF937106	Mycobacterium phage SirDuracell, complete genome	50687-50716	8	0.733
NZ_CP011412_3	3.14\|3353802\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353802-3353831	30	MG757160	Mycobacterium phage Kimchi, complete genome	52125-52154	8	0.733
NZ_CP011412_3	3.14\|3353802\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353802-3353831	30	MG872837	Mycobacterium phage Gage, complete genome	52122-52151	8	0.733
NZ_CP011412_3	3.14\|3353802\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353802-3353831	30	JF937091	Mycobacterium phage Bask21, complete genome	51298-51327	8	0.733
NZ_CP011412_3	3.14\|3353802\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353802-3353831	30	JN006062	Mycobacterium phage Rakim, complete genome	51934-51963	8	0.733
NZ_CP011412_3	3.14\|3353802\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353802-3353831	30	MK801726	Mycobacterium phage ChotaBhai, complete genome	51663-51692	8	0.733
NZ_CP011412_3	3.14\|3353802\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353802-3353831	30	MH399774	Mycobacterium phage DoctorDiddles, complete genome	51707-51736	8	0.733
NZ_CP011412_3	3.14\|3353802\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353802-3353831	30	MN586044	Mycobacterium phage Rimmer, complete genome	52173-52202	8	0.733
NZ_CP011412_3	3.16\|3353934\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353934-3353963	30	CP040467	Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence	244860-244889	8	0.733
NZ_CP011412_3	3.17\|3354000\|29\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3354000-3354028	29	CP000621	Burkholderia vietnamiensis G4 plasmid pBVIE05, complete sequence	58807-58835	8	0.724
NZ_CP011412_3	3.18\|3354065\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3354065-3354094	30	NZ_CP019318	Tateyamaria omphalii strain DOK1-4 plasmid pDOK1-4-6, complete sequence	21514-21543	8	0.733
NZ_CP011412_3	3.19\|3354131\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3354131-3354160	30	NZ_CP054841	Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence	459857-459886	8	0.733
NZ_CP011412_3	3.21\|3354263\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3354263-3354292	30	NC_013190	Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph02, complete sequence	30553-30582	8	0.733
NZ_CP011412_3	3.21\|3354263\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3354263-3354292	30	NZ_CP049358	Deinococcus wulumuqiensis R12 plasmid unnamed1, complete sequence	122676-122705	8	0.733
NZ_CP011412_3	3.21\|3354263\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3354263-3354292	30	NZ_CP031159	Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdA, complete sequence	114747-114776	8	0.733
NZ_CP011412_3	3.21\|3354263\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3354263-3354292	30	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	488000-488029	8	0.733
NZ_CP011412_3	3.21\|3354263\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3354263-3354292	30	NZ_CP007797	Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence	381162-381191	8	0.733
NZ_CP011412_3	3.21\|3354263\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3354263-3354292	30	NZ_CP013419	Burkholderia sp. MSMB0266 plasmid pMSMB0266, complete sequence	111046-111075	8	0.733
NZ_CP011412_3	3.24\|3354461\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3354461-3354490	30	MH651169	Mycobacterium phage Burwell21, complete genome	45135-45164	8	0.733
NZ_CP011412_3	3.2\|3353010\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353010-3353039	30	CP047390	Agrobacterium sp. CGMCC 11546 plasmid pB	88343-88372	9	0.7
NZ_CP011412_3	3.2\|3353010\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353010-3353039	30	NZ_CP035508	Haematobacter massiliensis strain OT1 plasmid pOT1-8, complete sequence	65959-65988	9	0.7
NZ_CP011412_3	3.8\|3353406\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353406-3353435	30	NC_012987	Methylorubrum extorquens AM1 plasmid p1METDI, complete sequence	74192-74221	9	0.7
NZ_CP011412_3	3.10\|3353538\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353538-3353567	30	NZ_CP016905	Ralstonia solanacearum strain KACC 10709 plasmid unnamed1	2072907-2072936	9	0.7
NZ_CP011412_3	3.10\|3353538\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353538-3353567	30	NZ_CP022791	Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence	1001765-1001794	9	0.7
NZ_CP011412_3	3.12\|3353670\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353670-3353699	30	NZ_AP022334	Methylosinus sp. C49 isolate Methylosinus sp. C49 plasmid pMSC49b, complete sequence	172518-172547	9	0.7
NZ_CP011412_3	3.15\|3353868\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353868-3353897	30	NC_014132	Leuconostoc kimchii IMSNU 11154 plasmid LkipL4704, complete sequence	18256-18285	9	0.7
NZ_CP011412_3	3.15\|3353868\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353868-3353897	30	NZ_CP042395	Leuconostoc citreum strain CBA3623 plasmid unnamed2, complete sequence	8307-8336	9	0.7
NZ_CP011412_3	3.15\|3353868\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353868-3353897	30	NC_016828	Leuconostoc mesenteroides subsp. mesenteroides J18 plasmid pKLE04, complete sequence	6693-6722	9	0.7
NZ_CP011412_3	3.15\|3353868\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353868-3353897	30	NZ_CP016599	Leuconostoc lactis strain WiKim40 plasmid pWK40-1, complete sequence	6604-6633	9	0.7
NZ_CP011412_3	3.15\|3353868\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353868-3353897	30	NZ_CP014604	Leuconostoc mesenteroides subsp. mesenteroides strain DRC0211 plasmid pDSK4, complete sequence	13640-13669	9	0.7
NZ_CP011412_3	3.15\|3353868\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3353868-3353897	30	NZ_CP014604	Leuconostoc mesenteroides subsp. mesenteroides strain DRC0211 plasmid pDSK4, complete sequence	32933-32962	9	0.7
NZ_CP011412_3	3.18\|3354065\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3354065-3354094	30	NZ_LN907828	Erwinia gerundensis isolate E_g_EM595 plasmid pEM01, complete sequence	463199-463228	9	0.7
NZ_CP011412_3	3.19\|3354131\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3354131-3354160	30	NZ_LR134447	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 5, complete sequence	111357-111386	9	0.7
NZ_CP011412_3	3.21\|3354263\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3354263-3354292	30	NZ_CP015586	Roseomonas gilardii strain U14-5 plasmid 2, complete sequence	29040-29069	9	0.7
NZ_CP011412_3	3.22\|3354329\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3354329-3354358	30	NZ_CP014515	Frondihabitans sp. PAMC 28766 strain SR6 plasmid 2, complete sequence	59899-59928	9	0.7
NZ_CP011412_3	3.23\|3354395\|30\|NZ_CP011412\|CRISPRCasFinder,CRT,PILER-CR	3354395-3354424	30	NC_015513	Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY03, complete sequence	78179-78208	9	0.7

1. spacer 2.1|1427223|25|NZ_CP011412|CRISPRCasFinder matches to MN657042 (Psychrobacter sp. strain ANT_P18B plasmid pA18BP1, complete sequence) position: , mismatch: 3, identity: 0.88

tttgactctattaattcattattga	CRISPR spacer
cttgactcttttaattcattactga	Protospacer
.******** ***********.***

2. spacer 2.1|1427223|25|NZ_CP011412|CRISPRCasFinder matches to NC_021497 (Lactobacillus reuteri I5007 plasmid pLRI05, complete sequence) position: , mismatch: 4, identity: 0.84

tttgactctattaattcattattga	CRISPR spacer
gttgactctagtaattcactattgc	Protospacer
 ********* *******.*****

3. spacer 1.1|515694|26|NZ_CP011412|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

gtcgctcccggccatccatggcctgc	CRISPR spacer
cctgctcacggccatgcatggcctgc	Protospacer
 ..**** ******* **********

4. spacer 3.8|3353406|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to MN582099 (Inoviridae sp. ctBZ32, complete genome) position: , mismatch: 5, identity: 0.833

tgcggcctcgtcaatcacgacgatgccctg	CRISPR spacer
ctgggcctcgtcaatcacgacgatggcctt	Protospacer
.  ********************** ***

5. spacer 3.10|3353538|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017424 (Arthrobacter sp. ZXY-2 plasmid pZXY23, complete sequence) position: , mismatch: 5, identity: 0.833

tcgccaactggcagcgccaccagcg-gatca	CRISPR spacer
ccgccacctggcaacgccaccagcgccatc-	Protospacer
.***** ******.***********  ***

6. spacer 3.21|3354263|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 5, identity: 0.833

--gaacggcgtgacgccctggtgcagcggctg	CRISPR spacer
caggccggc--gacgccctggtccagcggctg	Protospacer
  *. ****  *********** *********

7. spacer 3.21|3354263|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032324 (Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence) position: , mismatch: 5, identity: 0.833

--gaacggcgtgacgccctggtgcagcggctg	CRISPR spacer
caggccggc--gacgccctggtccagcggctg	Protospacer
  *. ****  *********** *********

8. spacer 2.1|1427223|25|NZ_CP011412|CRISPRCasFinder matches to NZ_CP040855 (Lactobacillus johnsonii strain G2A plasmid unnamed1) position: , mismatch: 6, identity: 0.76

tttgactctattaattcattattga	CRISPR spacer
acatactctattaattcattattac	Protospacer
 .  *******************.

9. spacer 3.8|3353406|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NC_017805 (Deinococcus gobiensis I-0 plasmid P1, complete sequence) position: , mismatch: 6, identity: 0.8

tgcggcctcgtcaatcacgacgatgccctg	CRISPR spacer
cgactcctcgtccatcacgacgatgcgctg	Protospacer
.*   ******* ************* ***

10. spacer 3.8|3353406|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NC_048782 (Rhodococcus phage Sleepyhead, complete genome) position: , mismatch: 6, identity: 0.8

-tgcggcctcgtcaatcacgacgatgccctg	CRISPR spacer
ctgc-gcctcgtccatcacgacgatgtcgac	Protospacer
 *** ******** ************.*

11. spacer 3.10|3353538|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030864 (Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

tcgcc-aactggcagcgccaccagcggatca	CRISPR spacer
-cgctggactggcagcgccactaccggatcc	Protospacer
 ***. .**************.* ******

12. spacer 3.10|3353538|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030864 (Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

tcgcc-aactggcagcgccaccagcggatca	CRISPR spacer
-cgctggactggcagcgccactaccggatcc	Protospacer
 ***. .**************.* ******

13. spacer 3.16|3353934|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032230 (Streptomyces seoulensis strain KCTC 9819 plasmid unnamed) position: , mismatch: 6, identity: 0.8

gagtgggatgtgttggcggcgctgtaccgc-	CRISPR spacer
aagcgggctgtgttggcggcgctg-gccgtg	Protospacer
.**.*** **************** .***.

14. spacer 3.17|3354000|29|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024308 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3a, complete sequence) position: , mismatch: 6, identity: 0.793

cgccgacggtccgattgccgagctgaatt	CRISPR spacer
tgccgacggtacgattgccgcgcttgagt	Protospacer
.********* ********* *** .* *

15. spacer 3.1|3352944|30|NZ_CP011412|CRISPRCasFinder,CRT matches to EU744250 (Mycobacterium virus Pukovnik, complete genome) position: , mismatch: 7, identity: 0.767

agctggggcgagattcgcgtgcctgcattt	CRISPR spacer
aggacaggcgagatgcccgtgcctgcattg	Protospacer
**   .******** * ************

16. spacer 3.1|3352944|30|NZ_CP011412|CRISPRCasFinder,CRT matches to MN703408 (Mycobacterium phage Phaded, complete genome) position: , mismatch: 7, identity: 0.767

agctggggcgagattcgcgtgcctgcattt	CRISPR spacer
aggacaggcgagatgcccgtgcctgcattg	Protospacer
**   .******** * ************

17. spacer 3.1|3352944|30|NZ_CP011412|CRISPRCasFinder,CRT matches to NC_031279 (Mycobacterium phage Bactobuster, complete genome) position: , mismatch: 7, identity: 0.767

agctggggcgagattcgcgtgcctgcattt	CRISPR spacer
aggacaggcgagatgcccgtgcctgcattg	Protospacer
**   .******** * ************

18. spacer 3.2|3353010|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015041 (Rhodovulum sp. P5 plasmid pRGUI02, complete sequence) position: , mismatch: 7, identity: 0.767

ggtgtcgaggatctgcgcatccgtccgaag	CRISPR spacer
agccgcgaggatctccgcatccgtccggaa	Protospacer
.*.  ********* ************.*.

19. spacer 3.2|3353010|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KP289281 (Pseudomonas sp. EGD-AKN5 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

ggtgtcgaggatctgcgcatccgtccgaag	CRISPR spacer
catctcgatgatcttcgcatccgtccgcaa	Protospacer
 .* **** ***** ************ *.

20. spacer 3.2|3353010|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013525 (Rhizobium phaseoli strain R744 plasmid pRphaR744c, complete sequence) position: , mismatch: 7, identity: 0.767

ggtgtcgaggatctgcgcatccgtccgaag	CRISPR spacer
ggtgtcgacgatccgcgcatccgccgggca	Protospacer
******** ****.*********.* *. .

21. spacer 3.2|3353010|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013554 (Rhizobium phaseoli strain N931 plasmid pRphaN931b, complete sequence) position: , mismatch: 7, identity: 0.767

ggtgtcgaggatctgcgcatccgtccgaag	CRISPR spacer
ggtgtcgacgatccgcgcatccgccgggca	Protospacer
******** ****.*********.* *. .

22. spacer 3.2|3353010|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013560 (Rhizobium phaseoli strain N841 plasmid pRphaN841c, complete sequence) position: , mismatch: 7, identity: 0.767

ggtgtcgaggatctgcgcatccgtccgaag	CRISPR spacer
ggtgtcgacgatccgcgcatccgccgggca	Protospacer
******** ****.*********.* *. .

23. spacer 3.2|3353010|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013577 (Rhizobium phaseoli strain N671 plasmid pRphaN671c, complete sequence) position: , mismatch: 7, identity: 0.767

ggtgtcgaggatctgcgcatccgtccgaag	CRISPR spacer
ggtgtcgacgatccgcgcatccgccgggca	Protospacer
******** ****.*********.* *. .

24. spacer 3.2|3353010|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013549 (Rhizobium phaseoli strain R611 plasmid pRetR611b, complete sequence) position: , mismatch: 7, identity: 0.767

ggtgtcgaggatctgcgcatccgtccgaag	CRISPR spacer
ggtgtcgacgatccgcgcatccgccgggca	Protospacer
******** ****.*********.* *. .

25. spacer 3.2|3353010|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013529 (Rhizobium phaseoli strain R723 plasmid pRphaR723b, complete sequence) position: , mismatch: 7, identity: 0.767

ggtgtcgaggatctgcgcatccgtccgaag	CRISPR spacer
ggtgtcgacgatccgcgcatccgccgggca	Protospacer
******** ****.*********.* *. .

26. spacer 3.2|3353010|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013534 (Rhizobium phaseoli strain R650 plasmid pRphaR650b, complete sequence) position: , mismatch: 7, identity: 0.767

ggtgtcgaggatctgcgcatccgtccgaag	CRISPR spacer
ggtgtcgacgatccgcgcatccgccgggca	Protospacer
******** ****.*********.* *. .

27. spacer 3.2|3353010|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013545 (Rhizobium phaseoli strain R620 plasmid pRphaR620c, complete sequence) position: , mismatch: 7, identity: 0.767

ggtgtcgaggatctgcgcatccgtccgaag	CRISPR spacer
ggtgtcgacgatccgcgcatccgccgggca	Protospacer
******** ****.*********.* *. .

28. spacer 3.2|3353010|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013565 (Rhizobium phaseoli strain N831 plasmid pRphaN831b, complete sequence) position: , mismatch: 7, identity: 0.767

ggtgtcgaggatctgcgcatccgtccgaag	CRISPR spacer
ggtgtcgacgatccgcgcatccgccgggca	Protospacer
******** ****.*********.* *. .

29. spacer 3.2|3353010|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NC_004956 (Pseudomonas sp. ADP atrazine catabolic plasmid pADP-1, complete sequence) position: , mismatch: 7, identity: 0.767

ggtgtcgaggatctgcgcatccgtccgaag	CRISPR spacer
catctcgatgatcttcgcatccgtccgcaa	Protospacer
 .* **** ***** ************ *.

30. spacer 3.2|3353010|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013582 (Rhizobium phaseoli strain N261 plasmid pRphaN261b, complete sequence) position: , mismatch: 7, identity: 0.767

ggtgtcgaggatctgcgcatccgtccgaag	CRISPR spacer
ggtgtcgacgatccgcgcatccgccgggca	Protospacer
******** ****.*********.* *. .

31. spacer 3.2|3353010|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013571 (Rhizobium phaseoli strain N771 plasmid pRphaN771c, complete sequence) position: , mismatch: 7, identity: 0.767

ggtgtcgaggatctgcgcatccgtccgaag	CRISPR spacer
ggtgtcgacgatccgcgcatccgccgggca	Protospacer
******** ****.*********.* *. .

32. spacer 3.2|3353010|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NC_010998 (Rhizobium etli CIAT 652 plasmid pA, complete sequence) position: , mismatch: 7, identity: 0.767

ggtgtcgaggatctgcgcatccgtccgaag	CRISPR spacer
ggtgtcgacgatccgcgcatccgccgggca	Protospacer
******** ****.*********.* *. .

33. spacer 3.4|3353142|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039965 (Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

cattgctctgggcatggatgtcgatgtcga	CRISPR spacer
ggatgctttgggcattgatgtcgatggtga	Protospacer
 . ****.******* ********** .**

34. spacer 3.5|3353208|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NC_018859 (Escherichia phage ECBP2, complete genome) position: , mismatch: 7, identity: 0.767

ccagtgctacaggccagcatgacgctgact	CRISPR spacer
ccagtgctacaggccatcatcacgtactcc	Protospacer
**************** *** ***.   *.

35. spacer 3.8|3353406|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NC_008203 (Mycobacterium phage Che12, complete genome) position: , mismatch: 7, identity: 0.767

tgcggcctcgtcaatcacgacgatgccctg	CRISPR spacer
aacggcttcgtcaatcacgtcgatgacttc	Protospacer
 .****.************ ***** *.*

36. spacer 3.8|3353406|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to DQ398043 (Mycobacterium virus Che12, complete genome) position: , mismatch: 7, identity: 0.767

tgcggcctcgtcaatcacgacgatgccctg	CRISPR spacer
aacggcttcgtcaatcacgtcgatgacttc	Protospacer
 .****.************ ***** *.*

37. spacer 3.11|3353604|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022191 (Yangia pacifica strain YSBP01 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

tcaacgaccgcgacccacagaaagagatcc	CRISPR spacer
gccacgaccgcgacgcacagaaggagacaa	Protospacer
 * *********** *******.****.

38. spacer 3.13|3353736|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

gaaagctggcccggatccggatgccaccga-----	CRISPR spacer
ggaagctggcccggatccgggtg-----gacatct	Protospacer
*.******************.**     **

39. spacer 3.16|3353934|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025613 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

gagtgggatgtgttggcggcgctgtaccgc	CRISPR spacer
cagtgggatgtgaaggcggcgctgcgccat	Protospacer
 ***********  **********..**..

40. spacer 3.17|3354000|29|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049360 (Deinococcus wulumuqiensis R12 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.759

cgccgacggtccgattgccgagctgaatt	CRISPR spacer
ggccgacgcgccgattgccgagctgcgcc	Protospacer
 *******  *************** ...

41. spacer 3.17|3354000|29|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 7, identity: 0.759

cgccgacggtccgattgccgagctgaatt	CRISPR spacer
cgccgacggtccgatggccgaggccatgc	Protospacer
*************** ****** . *  .

42. spacer 3.17|3354000|29|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012478 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

cgccgacggtccgattgccgagctgaatt	CRISPR spacer
cgccgacggtccgagcgccgagcgaggct	Protospacer
************** .******* ....*

43. spacer 3.17|3354000|29|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NC_017771 (Deinococcus gobiensis I-0 plasmid P3, complete sequence) position: , mismatch: 7, identity: 0.759

cgccgacggtccgattgccgagctgaatt	CRISPR spacer
ctccgagggtacgattgccgagctgccgg	Protospacer
* **** *** **************

44. spacer 3.18|3354065|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009292 (Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence) position: , mismatch: 7, identity: 0.767

actgatgaa--gaggtggtgattgccggagga	CRISPR spacer
--ggacgggtcgaggtggcgattgccggagga	Protospacer
   **.*..  *******.*************

45. spacer 3.21|3354263|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041045 (Paracoccus sp. AK26 plasmid pAK1, complete sequence) position: , mismatch: 7, identity: 0.767

gaacggcgt----gacgccctggtgcagcggctg	CRISPR spacer
----agcatctacgacgccctggtgccgcggctg	Protospacer
    .**.*    ************* *******

46. spacer 3.21|3354263|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to KF626665 (Phage Sano, complete genome) position: , mismatch: 7, identity: 0.767

gaacggcgtgacgccctggtgcagcggctg	CRISPR spacer
cgacggcgtgacgccctggaacagcatcgg	Protospacer
 .***************** .****. * *

47. spacer 3.24|3354461|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020740 ([Pseudomonas] mesoacidophila strain ATCC 31433 plasmid pATCC31433, complete sequence) position: , mismatch: 7, identity: 0.767

cgctcaatccacacaggagaacccaatgga	CRISPR spacer
ttcaaaatccatacaggagaaaccaatggc	Protospacer
. *  ******.********* *******

48. spacer 3.24|3354461|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to MH077580 (Mycobacterium phage Melissauren88, complete genome) position: , mismatch: 7, identity: 0.767

cgctcaatccacacaggagaacccaatgga	CRISPR spacer
accacaacccacacaggagaaccgaatgag	Protospacer
  * ***.*************** ****..

49. spacer 3.27|3354659|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to MN184886 (Erwinia phage pEp_SNUABM_08, complete genome) position: , mismatch: 7, identity: 0.767

aaacagcgcttaactgcttctcgcgatcca	CRISPR spacer
aaacggcgcttaaccgcttctcgcacaaga	Protospacer
****.*********.*********.    *

50. spacer 3.2|3353010|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014515 (Frondihabitans sp. PAMC 28766 strain SR6 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.733

ggtgtcgaggatctgcgcatccgtccgaag	CRISPR spacer
ggtgtcgaggacctgcgcatcggtgatggt	Protospacer
***********.********* **   ..

51. spacer 3.2|3353010|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014514 (Frondihabitans sp. PAMC 28766 strain SR6 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.733

ggtgtcgaggatctgcgcatccgtccgaag	CRISPR spacer
ggtgtcgaggacctgcgcatcggtgatggt	Protospacer
***********.********* **   ..

52. spacer 3.2|3353010|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009431 (Sphingopyxis macrogoltabida strain 203 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ggtgtcgaggatctgcgcatccgtccgaag	CRISPR spacer
gccgtcgaggaactgcgcatccgtcatcca	Protospacer
* .******** *************    .

53. spacer 3.2|3353010|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013588 (Rhizobium phaseoli strain N161 plasmid pRphaN161c, complete sequence) position: , mismatch: 8, identity: 0.733

ggtgtcgaggatctgcgcatccgtccgaag	CRISPR spacer
ggtgtcgacgatccgcgcatccgccgagca	Protospacer
******** ****.*********.* .. .

54. spacer 3.2|3353010|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013503 (Rhizobium esperanzae strain N561 plasmid pRspN561c, complete sequence) position: , mismatch: 8, identity: 0.733

ggtgtcgaggatctgcgcatccgtccgaag	CRISPR spacer
ggtgtcgacgatccgcgcatccgccgagca	Protospacer
******** ****.*********.* .. .

55. spacer 3.2|3353010|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013509 (Rhizobium sp. N1341 plasmid pRspN1341d, complete sequence) position: , mismatch: 8, identity: 0.733

ggtgtcgaggatctgcgcatccgtccgaag	CRISPR spacer
ggtgtcgacgatccgcgcatccgccgagca	Protospacer
******** ****.*********.* .. .

56. spacer 3.2|3353010|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013520 (Rhizobium sp. N113 plasmid pRspN113c, complete sequence) position: , mismatch: 8, identity: 0.733

ggtgtcgaggatctgcgcatccgtccgaag	CRISPR spacer
ggtgtcgacgatccgcgcatccgccgagca	Protospacer
******** ****.*********.* .. .

57. spacer 3.2|3353010|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013493 (Rhizobium sp. N6212 plasmid pRspN6212c, complete sequence) position: , mismatch: 8, identity: 0.733

ggtgtcgaggatctgcgcatccgtccgaag	CRISPR spacer
ggtgtcgacgatccgcgcatccgccgagca	Protospacer
******** ****.*********.* .. .

58. spacer 3.2|3353010|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013516 (Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence) position: , mismatch: 8, identity: 0.733

ggtgtcgaggatctgcgcatccgtccgaag	CRISPR spacer
ggtgtcgacgatccgcgcatccgccgagca	Protospacer
******** ****.*********.* .. .

59. spacer 3.2|3353010|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 8, identity: 0.733

ggtgtcgaggatctgcgcatccgtccgaag	CRISPR spacer
catgtcgaggatctgcgcctgcgtcgtcac	Protospacer
 .**************** * ****   *

60. spacer 3.2|3353010|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

ggtgtcgaggatctgcgcatccgtccgaag	CRISPR spacer
ggtgtcgaagatctgcgcatcgcgcgagaa	Protospacer
********.************   * ..*.

61. spacer 3.3|3353076|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 8, identity: 0.733

tcgtgctgatagctcgcctgccgcatttcg	CRISPR spacer
atctgctgaaagctcgcctgcagcatgcgg	Protospacer
 . ****** *********** **** . *

62. spacer 3.3|3353076|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 8, identity: 0.733

tcgtgctgatagctcgcctgccgcatttcg	CRISPR spacer
gcctgctgatagctcgcctccagcatgcgc	Protospacer
 * **************** * **** .

63. spacer 3.3|3353076|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023064 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence) position: , mismatch: 8, identity: 0.733

tcgtgctgatagctcgcctgccgcatttcg	CRISPR spacer
gcctgctgatagctcgcctccagcatgcgc	Protospacer
 * **************** * **** .

64. spacer 3.4|3353142|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046100 (Rhodococcus sp. AQ5-07 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

cattgctctgggcatggatgtcgatgtcga	CRISPR spacer
gagggctctgggcatggctgtcgatggacg	Protospacer
 *  ************* ********   .

65. spacer 3.5|3353208|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NC_011370 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence) position: , mismatch: 8, identity: 0.733

ccagtgctacaggccagcatgacgctgact	CRISPR spacer
atagtcctaccggccagcatgacgctcgag	Protospacer
 .*** **** *************** .

66. spacer 3.5|3353208|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to MT446414 (UNVERIFIED: Escherichia virus TH43, complete genome) position: , mismatch: 8, identity: 0.733

ccagtgctacaggccagcatgacgctgact	CRISPR spacer
ccagtgctacaggccatcatcacatactcc	Protospacer
**************** *** **..   *.

67. spacer 3.5|3353208|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to LC553734 (Escherichia phage EK010 DNA, complete sequence) position: , mismatch: 8, identity: 0.733

ccagtgctacaggccagcatgacgctgact	CRISPR spacer
ccagtgctacaggccatcatcacatactcc	Protospacer
**************** *** **..   *.

68. spacer 3.5|3353208|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to MT446413 (UNVERIFIED: Escherichia virus TH42, complete genome) position: , mismatch: 8, identity: 0.733

ccagtgctacaggccagcatgacgctgact	CRISPR spacer
ccagtgctacaggccatcatcacatactcc	Protospacer
**************** *** **..   *.

69. spacer 3.5|3353208|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to MK310183 (UNVERIFIED: Phage NC-B, complete genome) position: , mismatch: 8, identity: 0.733

ccagtgctacaggccagcatgacgctgact	CRISPR spacer
ccagtgctacaggccatcatcacatactcc	Protospacer
**************** *** **..   *.

70. spacer 3.8|3353406|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016283 (Cryobacterium arcticum strain PAMC 27867 plasmid pP27867_1, complete sequence) position: , mismatch: 8, identity: 0.733

tgcggcctcgtcaatcacgacgatgccctg	CRISPR spacer
gccggcctcgtcgaccacgacgatgtcgcc	Protospacer
  **********.*.**********.* .

71. spacer 3.8|3353406|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to MN657146 (Cryobacterium sp. strain ANT_H28B plasmid pA28BH2, complete sequence) position: , mismatch: 8, identity: 0.733

tgcggcctcgtcaatcacgacgatgccctg	CRISPR spacer
gccggcctcgtcgaccacgacgatgtcgcc	Protospacer
  **********.*.**********.* .

72. spacer 3.8|3353406|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 8, identity: 0.733

tgcggcctcgtcaatcacgacgatgccctg	CRISPR spacer
acccgcctcgtcaatcgcgacgatggctcc	Protospacer
  * ************.******** *..

73. spacer 3.10|3353538|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 8, identity: 0.733

tcgccaactggcagcgccaccagcggatca	CRISPR spacer
cgatggactggctgcgccacgagcggatca	Protospacer
. .. .****** ******* *********

74. spacer 3.10|3353538|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 8, identity: 0.733

tcgccaactggcagcgccaccagcggatca	CRISPR spacer
cgatggactggctgcgccacgagcggatca	Protospacer
. .. .****** ******* *********

75. spacer 3.10|3353538|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006990 (Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence) position: , mismatch: 8, identity: 0.733

tcgccaactggcagcgccaccagcggatca	CRISPR spacer
tcgctaactggcagcaccaccagtactacc	Protospacer
****.**********.*******..   *

76. spacer 3.10|3353538|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020911 (Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence) position: , mismatch: 8, identity: 0.733

tcgccaactggcagcgccaccagcggatca	CRISPR spacer
tcgctaactggcagcaccaccagtactacc	Protospacer
****.**********.*******..   *

77. spacer 3.10|3353538|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NC_021911 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence) position: , mismatch: 8, identity: 0.733

tcgccaactggcagcgccaccagcggatca	CRISPR spacer
tcgctaactggcagcaccaccagtactacc	Protospacer
****.**********.*******..   *

78. spacer 3.11|3353604|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 8, identity: 0.733

tcaacgaccgcgacccacagaaagagatcc	CRISPR spacer
tcaacgacctcgacccacagacgcgcttct	Protospacer
********* *********** . .  **.

79. spacer 3.13|3353736|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045548 (Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

gaaagctggcccggatccggatgccaccga	CRISPR spacer
tcaagctggccgggatgcggatgcccgctc	Protospacer
  ********* **** ********  *

80. spacer 3.14|3353802|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to KX834009 (Mycobacterium phage Goldilocks, complete genome) position: , mismatch: 8, identity: 0.733

gcaccgttggacggctacaccacgtttgtg	CRISPR spacer
ggcaagttcgacggctactccacgtttgcc	Protospacer
*    *** ********* *********.

81. spacer 3.14|3353802|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to MK359320 (Mycobacterium phage Cookies, complete genome) position: , mismatch: 8, identity: 0.733

gcaccgttggacggctacaccacgtttgtg	CRISPR spacer
ggcaagtttgacggctactccacgtttgcc	Protospacer
*    *** ********* *********.

82. spacer 3.14|3353802|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to MN586051 (Mycobacterium phage Myrale, complete genome) position: , mismatch: 8, identity: 0.733

gcaccgttggacggctacaccacgtttgtg	CRISPR spacer
ggcaagttcgacggctactccacgtttgcc	Protospacer
*    *** ********* *********.

83. spacer 3.14|3353802|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to MK016502 (Mycobacterium phage Pat3, complete genome) position: , mismatch: 8, identity: 0.733

gcaccgttggacggctacaccacgtttgtg	CRISPR spacer
ggcaagttcgacggctactccacgtttgcc	Protospacer
*    *** ********* *********.

84. spacer 3.14|3353802|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to JF937106 (Mycobacterium phage SirDuracell, complete genome) position: , mismatch: 8, identity: 0.733

gcaccgttggacggctacaccacgtttgtg	CRISPR spacer
ggcaagttcgacggctactccacgtttgcc	Protospacer
*    *** ********* *********.

85. spacer 3.14|3353802|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to MG757160 (Mycobacterium phage Kimchi, complete genome) position: , mismatch: 8, identity: 0.733

gcaccgttggacggctacaccacgtttgtg	CRISPR spacer
ggcaagttcgacggctactccacgtttgcc	Protospacer
*    *** ********* *********.

86. spacer 3.14|3353802|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to MG872837 (Mycobacterium phage Gage, complete genome) position: , mismatch: 8, identity: 0.733

gcaccgttggacggctacaccacgtttgtg	CRISPR spacer
ggcaagttcgacggctactccacgtttgcc	Protospacer
*    *** ********* *********.

87. spacer 3.14|3353802|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to JF937091 (Mycobacterium phage Bask21, complete genome) position: , mismatch: 8, identity: 0.733

gcaccgttggacggctacaccacgtttgtg	CRISPR spacer
ggcaagttcgacggctactccacgtttgcc	Protospacer
*    *** ********* *********.

88. spacer 3.14|3353802|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to JN006062 (Mycobacterium phage Rakim, complete genome) position: , mismatch: 8, identity: 0.733

gcaccgttggacggctacaccacgtttgtg	CRISPR spacer
ggcaagttcgacggctactccacgtttgcc	Protospacer
*    *** ********* *********.

89. spacer 3.14|3353802|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to MK801726 (Mycobacterium phage ChotaBhai, complete genome) position: , mismatch: 8, identity: 0.733

gcaccgttggacggctacaccacgtttgtg	CRISPR spacer
ggcaagttcgacggctactccacgtttgcc	Protospacer
*    *** ********* *********.

90. spacer 3.14|3353802|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to MH399774 (Mycobacterium phage DoctorDiddles, complete genome) position: , mismatch: 8, identity: 0.733

gcaccgttggacggctacaccacgtttgtg	CRISPR spacer
ggcaagttcgacggctactccacgtttgcc	Protospacer
*    *** ********* *********.

91. spacer 3.14|3353802|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to MN586044 (Mycobacterium phage Rimmer, complete genome) position: , mismatch: 8, identity: 0.733

gcaccgttggacggctacaccacgtttgtg	CRISPR spacer
ggcaagttcgacggctactccacgtttgcc	Protospacer
*    *** ********* *********.

92. spacer 3.16|3353934|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to CP040467 (Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

gagtgggatgtgttggcggcgctgtaccgc	CRISPR spacer
tcgagggccgtgttggcggcgctgtacgcg	Protospacer
  * *** .******************

93. spacer 3.17|3354000|29|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to CP000621 (Burkholderia vietnamiensis G4 plasmid pBVIE05, complete sequence) position: , mismatch: 8, identity: 0.724

cgccgacggtccgattgccgagctgaatt	CRISPR spacer
agccgacggtctgattgccgcgctcgtag	Protospacer
 **********.******** *** .

94. spacer 3.18|3354065|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019318 (Tateyamaria omphalii strain DOK1-4 plasmid pDOK1-4-6, complete sequence) position: , mismatch: 8, identity: 0.733

actgatgaagaggtggtgattgccggagga	CRISPR spacer
gctgcggaagaggtggtgattgccgccttg	Protospacer
.***  *******************    .

95. spacer 3.19|3354131|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

aagctctgtgactacctgatgcgcaataaa	CRISPR spacer
gcgatcagtgtctacctgatgcgcaatgcg	Protospacer
. * ** *** ****************. .

96. spacer 3.21|3354263|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NC_013190 (Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph02, complete sequence) position: , mismatch: 8, identity: 0.733

gaacggcgtgacgccctggtgcagcggctg	CRISPR spacer
gcctggcgtgacgacctggtgcagcgcgcc	Protospacer
*  .********* ************  .

97. spacer 3.21|3354263|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049358 (Deinococcus wulumuqiensis R12 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

gaacggcgtgacgccctggtgcagcggctg	CRISPR spacer
cgcgaacgtgacgcgctggtgcggcggctg	Protospacer
 .  ..******** *******.*******

98. spacer 3.21|3354263|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031159 (Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdA, complete sequence) position: , mismatch: 8, identity: 0.733

gaacggcgtgacgccctggtgcagcggctg	CRISPR spacer
cgcgaacgtgacgcgctggtgcggcggctg	Protospacer
 .  ..******** *******.*******

99. spacer 3.21|3354263|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 8, identity: 0.733

gaacggcgtgacgccctggtgcagcggctg	CRISPR spacer
agccggcgtcacgccctggtgctgcgtcaa	Protospacer
.. ****** ************ *** * .

100. spacer 3.21|3354263|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007797 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence) position: , mismatch: 8, identity: 0.733

gaacggcgtgacgccctggtgcagcggctg	CRISPR spacer
caggctggcgacgccctggtccagcggctg	Protospacer
 *.    *.*********** *********

101. spacer 3.21|3354263|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013419 (Burkholderia sp. MSMB0266 plasmid pMSMB0266, complete sequence) position: , mismatch: 8, identity: 0.733

gaacggcgtgacgccctggtgcagcggctg	CRISPR spacer
aagggagcagacgccctggtggagcggctg	Protospacer
.*. *.   ************ ********

102. spacer 3.24|3354461|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to MH651169 (Mycobacterium phage Burwell21, complete genome) position: , mismatch: 8, identity: 0.733

cgctcaatccacacaggagaacccaatgga	CRISPR spacer
acctcaacccacacaggagaaccgatgagc	Protospacer
  *****.*************** *  .*

103. spacer 3.2|3353010|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to CP047390 (Agrobacterium sp. CGMCC 11546 plasmid pB) position: , mismatch: 9, identity: 0.7

ggtgtcgaggatctgcgcatccgtccgaag	CRISPR spacer
cggttcgaggctctgcgcatccgtcttgcc	Protospacer
 *  ****** **************. .

104. spacer 3.2|3353010|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035508 (Haematobacter massiliensis strain OT1 plasmid pOT1-8, complete sequence) position: , mismatch: 9, identity: 0.7

ggtgtcgaggatctgcgcatccgtccgaag	CRISPR spacer
cgcatcgaggatctgcgcctccgtcatcgc	Protospacer
 *..************** ******   .

105. spacer 3.8|3353406|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NC_012987 (Methylorubrum extorquens AM1 plasmid p1METDI, complete sequence) position: , mismatch: 9, identity: 0.7

tgcggcctcgtcaatcacgacgatgccctg	CRISPR spacer
cccggcctcgtcgatcacgacgagttcgac	Protospacer
. **********.**********  .*

106. spacer 3.10|3353538|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016905 (Ralstonia solanacearum strain KACC 10709 plasmid unnamed1) position: , mismatch: 9, identity: 0.7

tcgccaactggcagcgccaccagcggatca	CRISPR spacer
gattcaactggcggcgccaccggcggagac	Protospacer
   .********.********.*****

107. spacer 3.10|3353538|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022791 (Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

tcgccaactggcagcgccaccagcggatca	CRISPR spacer
gattcaactggcggcgccaccggcggagac	Protospacer
   .********.********.*****

108. spacer 3.12|3353670|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022334 (Methylosinus sp. C49 isolate Methylosinus sp. C49 plasmid pMSC49b, complete sequence) position: , mismatch: 9, identity: 0.7

taatatacgtccggtcggtcgttggcacga	CRISPR spacer
cagccaggttccggtcgatcgttggcacga	Protospacer
.*..  .  ********.************

109. spacer 3.15|3353868|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NC_014132 (Leuconostoc kimchii IMSNU 11154 plasmid LkipL4704, complete sequence) position: , mismatch: 9, identity: 0.7

atgaccgcctcaaacgtatcggtaatggaa	CRISPR spacer
taaaaaaactcaaacgtatcggttatggat	Protospacer
  .*  . *************** *****

110. spacer 3.15|3353868|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042395 (Leuconostoc citreum strain CBA3623 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.7

atgaccgcctcaaacgtatcggtaatggaa	CRISPR spacer
taaaaaaactcaaacgtatcggttatggat	Protospacer
  .*  . *************** *****

111. spacer 3.15|3353868|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NC_016828 (Leuconostoc mesenteroides subsp. mesenteroides J18 plasmid pKLE04, complete sequence) position: , mismatch: 9, identity: 0.7

atgaccgcctcaaacgtatcggtaatggaa	CRISPR spacer
taaaaaaactcaaacgtatcggttatggat	Protospacer
  .*  . *************** *****

112. spacer 3.15|3353868|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016599 (Leuconostoc lactis strain WiKim40 plasmid pWK40-1, complete sequence) position: , mismatch: 9, identity: 0.7

atgaccgcctcaaacgtatcggtaatggaa	CRISPR spacer
taaaaaaactcaaacgtatcggttatggat	Protospacer
  .*  . *************** *****

113. spacer 3.15|3353868|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014604 (Leuconostoc mesenteroides subsp. mesenteroides strain DRC0211 plasmid pDSK4, complete sequence) position: , mismatch: 9, identity: 0.7

atgaccgcctcaaacgtatcggtaatggaa	CRISPR spacer
taaaaaaactcaaacgtatcggttatggat	Protospacer
  .*  . *************** *****

114. spacer 3.15|3353868|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014604 (Leuconostoc mesenteroides subsp. mesenteroides strain DRC0211 plasmid pDSK4, complete sequence) position: , mismatch: 9, identity: 0.7

atgaccgcctcaaacgtatcggtaatggaa	CRISPR spacer
taaaaaaactcaaacgtatcggttatggat	Protospacer
  .*  . *************** *****

115. spacer 3.18|3354065|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LN907828 (Erwinia gerundensis isolate E_g_EM595 plasmid pEM01, complete sequence) position: , mismatch: 9, identity: 0.7

actgatgaagaggtggtgattgccggagga	CRISPR spacer
tctgatgatgacgtggtgattgccatttct	Protospacer
 ******* ** ************.

116. spacer 3.19|3354131|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134447 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 5, complete sequence) position: , mismatch: 9, identity: 0.7

aagctctgtgactacctgatgcgcaataaa	CRISPR spacer
cagctgtgtgactacctgaggcgcccactg	Protospacer
 **** ************* ****     .

117. spacer 3.21|3354263|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015586 (Roseomonas gilardii strain U14-5 plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.7

gaacggcgtgacgccctggtgcagcggctg	CRISPR spacer
ccacggcgtgaagccctcgtgcagcccgaa	Protospacer
  ********* ***** *******    .

118. spacer 3.22|3354329|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014515 (Frondihabitans sp. PAMC 28766 strain SR6 plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.7

atgcgttggtggcgttctctcaggctaatc	CRISPR spacer
cggcgttggtggcgttctgccaggcggcga	Protospacer
  **************** .***** .

119. spacer 3.23|3354395|30|NZ_CP011412|CRISPRCasFinder,CRT,PILER-CR matches to NC_015513 (Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY03, complete sequence) position: , mismatch: 9, identity: 0.7

ttggtatagattacttaatgcacctggact	CRISPR spacer
aaagtatagattacttaatgctcatgtcac	Protospacer
  .****************** * **   .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1120120 : 1128166

uncultured_Mediterranean_phage(50.0%)

protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046858748.1\|1120120_1122379_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	7.5e-171	43.4
WP_046858749.1\|1122474_1122795_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.2e-12	39.4
WP_046858750.1\|1123156_1123369_+	cold shock domain-containing protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	6.9e-18	60.6
WP_046858751.1\|1123575_1124832_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.8e-17	81.5
WP_046858752.1\|1124923_1125589_-	endonuclease III domain-containing protein	NA	NA	NA	NA
WP_046861025.1\|1125585_1126431_-	pseudouridine synthase	NA	NA	NA	NA
WP_046861026.1\|1126420_1127227_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	8.4e-24	36.0
WP_046858753.1\|1127326_1128166_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	3.7e-14	27.6

DBSCAN-SWA_2

2514338 : 2527244

Shigella_phage(33.33%)

integrase,transposase

attL 2516875:2516890|attR 2528271:2528286

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_082117253.1\|2514338_2514503_-\|transposase	transposase	NA	NA	NA	NA
WP_046859807.1\|2514557_2514893_-	hypothetical protein	NA	NA	NA	NA
WP_046861252.1\|2515462_2516092_-	hypothetical protein	NA	NA	NA	NA
WP_046859808.1\|2516197_2516629_-	hypothetical protein	NA	NA	NA	NA
WP_046861253.1\|2516714_2517296_-	hypothetical protein	NA	NA	NA	NA
2516875:2516890	attL	NA	NA	NA	NA
WP_046859809.1\|2517408_2517801_-	DUF3792 family protein	NA	NA	NA	NA
WP_046859810.1\|2517898_2518117_-	hypothetical protein	NA	NA	NA	NA
WP_046859811.1\|2518255_2519068_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.9e-45	39.5
WP_046859812.1\|2519106_2519478_-\|transposase	transposase	NA	NA	NA	NA
WP_046859813.1\|2520421_2520808_-	hypothetical protein	NA	NA	NA	NA
WP_082117254.1\|2520906_2521221_-	hypothetical protein	NA	NA	NA	NA
WP_046859815.1\|2521322_2522096_-	hypothetical protein	NA	NA	NA	NA
WP_046861254.1\|2523595_2524771_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_046859816.1\|2524773_2525631_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	1.8e-40	36.2
WP_082117126.1\|2525852_2527244_+\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	1.7e-56	40.8
2528271:2528286	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011412

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection