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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011451 Nitrosomonas communis strain Nm2 chromosome, complete genome 6 crisprs RT,cas3,cas2,DEDDh,csa3,cas1,DinG,cas4,cas7,cas8c,cas5,WYL 0 4 15 0

Results visualization

1. NZ_CP011451
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011451_1 563525-563658 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011451_2 975878-976211 Unclear I-E,II-B
5 spacers
cas2

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011451_3 2172595-2172705 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011451_4 2454602-2454688 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011451_5 2970101-2970182 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011451_6 3445792-3446622 TypeI I-C
11 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP011451_2 2.2|975968|32|NZ_CP011451|CRISPRCasFinder,CRT,PILER-CR 975968-975999 32 NC_011667 Thauera sp. MZ1T plasmid pTha01, complete sequence 76214-76245 10 0.688
NZ_CP011451_6 6.1|3445829|35|NZ_CP011451|PILER-CR,CRISPRCasFinder,CRT 3445829-3445863 35 NZ_CP018385 Burkholderia pseudomallei strain 2008724860 plasmid p1, complete sequence 96835-96869 10 0.714
NZ_CP011451_6 6.7|3446262|35|NZ_CP011451|PILER-CR,CRISPRCasFinder,CRT 3446262-3446296 35 NZ_CP040452 Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence 598752-598786 10 0.714
NZ_CP011451_6 6.2|3445901|34|NZ_CP011451|PILER-CR,CRISPRCasFinder,CRT 3445901-3445934 34 NZ_CP007510 Pseudomonas stutzeri strain 19SMN4 plasmid pLIB119, complete plasmid 58212-58245 11 0.676

1. spacer 2.2|975968|32|NZ_CP011451|CRISPRCasFinder,CRT,PILER-CR matches to NC_011667 (Thauera sp. MZ1T plasmid pTha01, complete sequence) position: , mismatch: 10, identity: 0.688

tgcattcattgccgggtgatagcttttggttc	CRISPR spacer
tcatttcattgcaaggtgatagctttttcgca	Protospacer
*   ******** .*************   . 

2. spacer 6.1|3445829|35|NZ_CP011451|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018385 (Burkholderia pseudomallei strain 2008724860 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.714

caattctgaatccagccaaagtcaccggcataaaa	CRISPR spacer
cctccatcgttccagccatagtcaccggcaaaaaa	Protospacer
*  .. * . ******** *********** ****

3. spacer 6.7|3446262|35|NZ_CP011451|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 10, identity: 0.714

ctcctgat-----tcttcgtcaaacatctcaccattgtct	CRISPR spacer
-----ggtggatatcttcgtcaaagatctcaacattgtgc	Protospacer
     *.*     *********** ****** ****** .

4. spacer 6.2|3445901|34|NZ_CP011451|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007510 (Pseudomonas stutzeri strain 19SMN4 plasmid pLIB119, complete plasmid) position: , mismatch: 11, identity: 0.676

cttaacctcgatagttgaggtgctgattgcggct	CRISPR spacer
gactgctcgcatagttgaagagctgattgcggct	Protospacer
  . .*..  ********.* *************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 400413 : 510487 94 Pseudomonas_phage(12.9%) tRNA,transposase,integrase,terminase attL 481785:481800|attR 494909:494924
DBSCAN-SWA_2 513882 : 531098 21 Pseudomonas_phage(53.85%) tail NA
DBSCAN-SWA_3 962795 : 1016707 44 Synechococcus_phage(33.33%) protease,transposase NA
DBSCAN-SWA_4 1022726 : 1113110 83 Pseudomonas_phage(27.27%) transposase,integrase,terminase attL 1011219:1011234|attR 1085638:1085653
DBSCAN-SWA_5 1140538 : 1260002 112 Pseudomonas_phage(14.29%) tRNA,protease,transposase,integrase attL 1140472:1140531|attR 1188472:1189736
DBSCAN-SWA_6 1446724 : 1554556 99 Acidithiobacillus_phage(28.57%) transposase NA
DBSCAN-SWA_7 1651173 : 1714420 46 Planktothrix_phage(16.67%) tRNA,transposase,integrase attL 1693031:1693048|attR 1715700:1715717
DBSCAN-SWA_8 1802863 : 1854198 50 Staphylococcus_phage(20.0%) tRNA,protease,transposase NA
DBSCAN-SWA_9 2237917 : 2286491 49 Enterobacteria_phage(28.57%) transposase NA
DBSCAN-SWA_10 2296775 : 2343953 39 Paenibacillus_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_11 2539455 : 2614143 78 Erysipelothrix_phage(11.76%) tRNA,transposase NA
DBSCAN-SWA_12 2768968 : 2868751 58 Tupanvirus(28.57%) transposase NA
DBSCAN-SWA_13 3552304 : 3603119 50 Catovirus(13.33%) tRNA,protease,transposase NA
DBSCAN-SWA_14 3611480 : 3675352 51 Paenibacillus_phage(18.18%) tRNA,transposase NA
DBSCAN-SWA_15 3791196 : 3846424 67 Wolbachia_phage(17.39%) transposase,portal,integrase attL 3800312:3800328|attR 3844993:3845009
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage