CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011452	Altererythrobacter atlanticus strain 26DY36 chromosome, complete genome	0 crisprs	DinG,csa3,DEDDh	0	0	3	0
NZ_CP011453	Altererythrobacter atlanticus strain 26DY36 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

400089 : 410398

uncultured_Mediterranean_phage(42.86%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046902488.1\|400089_402327_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	2.0e-160	42.4
WP_046902489.1\|402447_402696_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_046902490.1\|402699_403605_+	polyprenyl synthetase family protein	A0A0C5BCP6	African_swine_fever_virus	1.2e-07	27.1
WP_046902491.1\|403601_404111_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	1.5e-34	48.7
WP_046902492.1\|404187_404877_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	3.2e-32	52.1
WP_046904715.1\|404958_405990_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_046902493.1\|405993_406389_-	cupin domain-containing protein	Q2I8C5	Bacillus_phage	1.0e-22	46.5
WP_046902494.1\|406523_407471_+	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	9.9e-16	27.1
WP_046902495.1\|407467_408229_+	ABC transporter permease	NA	NA	NA	NA
WP_046902496.1\|408248_409211_+	DUF481 domain-containing protein	NA	NA	NA	NA
WP_046902497.1\|409273_410398_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.1e-103	52.5

DBSCAN-SWA_2

2535960 : 2545313

Caulobacter_phage(33.33%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_053833563.1\|2535960_2537799_-	hypothetical protein	K4JVV3	Caulobacter_phage	1.2e-25	38.5
WP_156320199.1\|2537804_2538203_-	C40 family peptidase	NA	NA	NA	NA
WP_046904023.1\|2538214_2539036_-	DUF2163 domain-containing protein	A0A0B5A5B8	Paracoccus_phage	5.9e-33	31.4
WP_046904024.1\|2539032_2541357_-	DUF2460 domain-containing protein	A0MZE6	Enterobacteria_phage	2.9e-40	33.0
WP_046904025.1\|2541371_2541935_-	hypothetical protein	D6PEW0	uncultured_phage	2.2e-10	40.8
WP_046904026.1\|2541927_2542125_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_053833564.1\|2542222_2542708_-	DNA-packaging protein	A0A0K1LMR9	Caulobacter_phage	5.1e-24	41.6
WP_046904027.1\|2542700_2543201_-	hypothetical protein	NA	NA	NA	NA
WP_046904028.1\|2543410_2544049_+	DedA family protein	NA	NA	NA	NA
WP_046904029.1\|2544062_2545313_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	V5LQ39	Emiliania_huxleyi_virus	2.3e-36	29.2

DBSCAN-SWA_3

3077133 : 3143860

Ralstonia_phage(20.0%)

integrase,protease

attL 3132478:3132494|attR 3151279:3151295

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_179945454.1\|3077133_3077667_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_046905227.1\|3077751_3079053_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A2H5BJT2	Erwinia_phage	6.1e-32	27.1
WP_046904404.1\|3079162_3079429_+	hypothetical protein	NA	NA	NA	NA
WP_046904405.1\|3079445_3079637_+	DUF1737 domain-containing protein	NA	NA	NA	NA
WP_053833611.1\|3079644_3080184_-	cytochrome c	NA	NA	NA	NA
WP_046905228.1\|3080282_3081776_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	2.3e-152	60.0
WP_046904407.1\|3081959_3082484_-	hypothetical protein	NA	NA	NA	NA
WP_046904408.1\|3082603_3083191_-	cytochrome c	NA	NA	NA	NA
WP_046904409.1\|3083289_3085116_-	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	1.5e-44	28.0
WP_046904410.1\|3085164_3086121_-\|protease	aspartyl protease family protein	NA	NA	NA	NA
WP_046904411.1\|3086209_3087676_-	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_053833612.1\|3087672_3088707_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_046904414.1\|3101675_3101936_-	hypothetical protein	NA	NA	NA	NA
WP_082348021.1\|3102002_3102209_-	hypothetical protein	NA	NA	NA	NA
WP_046905231.1\|3102483_3103875_+	class II fumarate hydratase	NA	NA	NA	NA
WP_046904415.1\|3104020_3106858_+	TonB-dependent receptor	NA	NA	NA	NA
WP_046904416.1\|3106857_3107871_+	phytase	NA	NA	NA	NA
WP_046904417.1\|3107867_3111467_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA
WP_046904418.1\|3111592_3112051_+	MgtC/SapB family protein	NA	NA	NA	NA
WP_046905232.1\|3112134_3113445_+	DUF839 domain-containing protein	NA	NA	NA	NA
WP_046904419.1\|3113493_3114141_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_046904420.1\|3114137_3114602_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA
WP_046904421.1\|3114598_3115402_+	fructosamine kinase family protein	NA	NA	NA	NA
WP_046904422.1\|3115442_3116225_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_046904423.1\|3116226_3116973_-	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_156320211.1\|3116998_3118903_-	sulfate adenylyltransferase subunit CysN	A0A1V0SGC3	Hokovirus	3.8e-30	28.7
WP_046904425.1\|3118929_3119832_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA
WP_046904426.1\|3119910_3120963_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_046904427.1\|3121034_3122180_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_053833613.1\|3122216_3122747_-	DUF308 domain-containing protein	NA	NA	NA	NA
WP_046904428.1\|3122795_3123230_-	hypothetical protein	NA	NA	NA	NA
WP_053833614.1\|3123192_3123483_-	hypothetical protein	NA	NA	NA	NA
WP_046904429.1\|3123506_3124004_-	hypothetical protein	NA	NA	NA	NA
WP_046904430.1\|3124103_3124556_+	MaoC family dehydratase	NA	NA	NA	NA
WP_046904431.1\|3124631_3125582_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA
WP_156320157.1\|3125705_3125930_-	hypothetical protein	NA	NA	NA	NA
WP_046904432.1\|3126039_3127035_-	dihydroxyacetone kinase subunit DhaK	NA	NA	NA	NA
WP_156320158.1\|3127063_3127735_-	dihydroxyacetone kinase subunit L	NA	NA	NA	NA
WP_046904433.1\|3127746_3128472_-	HAD-IA family hydrolase	M1H491	Acanthocystis_turfacea_Chlorella_virus	4.2e-14	32.0
WP_046904434.1\|3128488_3129376_-	class II fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_046904435.1\|3130146_3131691_+	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	1.7e-20	27.9
WP_046904436.1\|3132116_3133346_+\|integrase	site-specific integrase	B7SYF8	Stenotrophomonas_phage	1.0e-97	47.4
3132478:3132494	attL	NA	NA	NA	NA
WP_046904437.1\|3134011_3135418_+	3' terminal RNA ribose 2'-O-methyltransferase Hen1	NA	NA	NA	NA
WP_046904438.1\|3135414_3137958_+	polynucleotide kinase-phosphatase	A0A220BYT7	Staphylococcus_phage	1.8e-11	25.3
WP_169780821.1\|3137954_3139667_-	S8 family serine peptidase	NA	NA	NA	NA
WP_046904440.1\|3140301_3141288_-	ATP-binding protein	NA	NA	NA	NA
WP_046904441.1\|3141473_3142691_-\|integrase	site-specific integrase	A0A221SAN4	Ralstonia_phage	4.5e-29	28.8
WP_046905236.1\|3142687_3143860_-\|integrase	tyrosine-type recombinase/integrase	A0A221SAN4	Ralstonia_phage	5.1e-38	29.9
3151279:3151295	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage