CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011478	Spongiibacter sp. IMCC21906 plasmid, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP011477	Spongiibacter sp. IMCC21906, complete genome	2 crisprs	cas3,csa3,DinG,DEDDh,RT,PD-DExK	1	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011477_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011477_1

200219-200347

Orphan

Consensus_repeat	Method
GCGGTGGCTTTCTGGATACCGGCTCGGAGGCCGGTATGACGAAGCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011477_1

>merge|NZ_CP011477|1|200219-200347|CRISPRCasFinder
GCGGTGGCTTTCTGGATACCGGCTCGGAGGCCGGTATGACGAAGCTCAAGGGAACGTTTTACCCCCGACGGGAGCCCAAAGTGCGGTGGCTTTCTGGATACCAGCTCGGAGGCCGGTATGACGAAGCTC

>NZ_CP011477|1|1|200219-200347|CRISPRCasFinder
GCGGTGGCTTTCTGGATACCGGCTCGGAGGCCGGTATGACGAAGCTC	AAGGGAACGTTTTACCCCCGACGGGAGCCCAAAGT
GCGGTGGCTTTCTGGATACCAGCTCGGAGGCCGGTATGACGAAGCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011477.1\|WP_047010583.1\|202110_202941_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NZ_CP011477.1\|WP_047010570.1\|181074_183324_+\|polysaccharide-biosynthesis-tyrosine-autokinase	unknown	unknown	gnl\|CDD\|183173
NZ_CP011477.1\|WP_047010575.1\|191403_191856_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|198395
NZ_CP011477.1\|WP_047010584.1\|202949_203651_+\|DUF484-family-protein	unknown	unknown	gnl\|CDD\|282228
NZ_CP011477.1\|WP_047010585.1\|205675_206887_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|224423
NZ_CP011477.1\|WP_047010587.1\|207834_208032_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011477.1\|WP_047010574.1\|188364_190080_+\|gamma-glutamyltransferase	unknown	unknown	gnl\|CDD\|223482
NZ_CP011477.1\|WP_082117294.1\|183936_184188_+\|YfhL-family-4Fe-4S-dicluster-ferredoxin	unknown	unknown	gnl\|CDD\|273902
NZ_CP011477.1\|WP_047010576.1\|191852_192671_-\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	unknown	unknown	gnl\|CDD\|234899
NZ_CP011477.1\|WP_047010582.1\|200746_201994_+\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|273415
NZ_CP011477.1\|WP_047010588.1\|208451_208790_-\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|223424
NZ_CP011477.1\|WP_047010589.1\|209017_210262_-\|ammonium-transporter	unknown	unknown	gnl\|CDD\|274697
NZ_CP011477.1\|WP_047010573.1\|186838_187126_+\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|198395
NZ_CP011477.1\|WP_047010586.1\|207129_207855_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223943
NZ_CP011477.1\|WP_047010569.1\|179827_180961_+\|polysaccharide-export-protein-Wza	unknown	unknown	gnl\|CDD\|237903
NZ_CP011477.1\|WP_047010577.1\|192794_194822_+\|hydantoinase/oxoprolinase-family-protein	unknown	unknown	gnl\|CDD\|223223
NZ_CP011477.1\|WP_156165951.1\|200519_200738_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|338858
NZ_CP011477.1\|WP_047010590.1\|210331_210670_-\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|223424
NZ_CP011477.1\|WP_052763289.1\|195216_198012_+\|class-I-adenylate-cyclase	unknown	unknown	gnl\|CDD\|236522
NZ_CP011477.1\|WP_047010571.1\|183439_183925_+\|pantetheine-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234674

Protein	Function_ID	Function_description	E-value
NZ_CP011477.1\|WP_047010583.1\|202110_202941_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	7.73777e-158
NZ_CP011477.1\|WP_047010570.1\|181074_183324_+\|polysaccharide-biosynthesis-tyrosine-autokinase	gnl\|CDD\|183173	PRK11519, PRK11519, tyrosine-protein kinase Wzc.	0
NZ_CP011477.1\|WP_047010575.1\|191403_191856_+\|hypothetical-protein	gnl\|CDD\|198395	cd10448, GIY-YIG_unchar_3, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria. The family includes a group of uncharacterized bacterial proteins with a GIY-YIG domain that shows statistically significant similarity to the N-terminal catalytic domains of GIY-YIG family of intron-encoded homing endonuclease I-TevI and catalytic GIY-YIG domain of nucleotide excision repair endonuclease UvrC.	8.66282e-15
NZ_CP011477.1\|WP_047010584.1\|202949_203651_+\|DUF484-family-protein	gnl\|CDD\|282228	pfam04340, DUF484, Protein of unknown function, DUF484. This family consists of several proteins of uncharacterized function.	8.90925e-51
NZ_CP011477.1\|WP_047010585.1\|205675_206887_-\|alpha/beta-hydrolase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	0.000655102
NZ_CP011477.1\|WP_047010588.1\|208451_208790_-\|P-II-family-nitrogen-regulator	gnl\|CDD\|223424	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism].	5.54833e-56
NZ_CP011477.1\|WP_047010574.1\|188364_190080_+\|gamma-glutamyltransferase	gnl\|CDD\|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	0
NZ_CP011477.1\|WP_082117294.1\|183936_184188_+\|YfhL-family-4Fe-4S-dicluster-ferredoxin	gnl\|CDD\|273902	TIGR01971, NADH-quinone_oxidoreductase_subunit_9, NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A->N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes. [Energy metabolism, Electron transport].	6.04426e-07
NZ_CP011477.1\|WP_047010576.1\|191852_192671_-\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	gnl\|CDD\|234899	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase.	1.7141e-167
NZ_CP011477.1\|WP_047010582.1\|200746_201994_+\|diaminopimelate-decarboxylase	gnl\|CDD\|273415	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis. [Amino acid biosynthesis, Aspartate family].	0
NZ_CP011477.1\|WP_047010589.1\|209017_210262_-\|ammonium-transporter	gnl\|CDD\|274697	TIGR03644, marine_trans_1, probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.	0
NZ_CP011477.1\|WP_047010573.1\|186838_187126_+\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|198395	cd10448, GIY-YIG_unchar_3, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria. The family includes a group of uncharacterized bacterial proteins with a GIY-YIG domain that shows statistically significant similarity to the N-terminal catalytic domains of GIY-YIG family of intron-encoded homing endonuclease I-TevI and catalytic GIY-YIG domain of nucleotide excision repair endonuclease UvrC.	7.50238e-53
NZ_CP011477.1\|WP_047010586.1\|207129_207855_+\|HAD-family-hydrolase	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	2.03695e-28
NZ_CP011477.1\|WP_047010569.1\|179827_180961_+\|polysaccharide-export-protein-Wza	gnl\|CDD\|237903	PRK15078, PRK15078, polysaccharide export protein Wza; Provisional.	1.43011e-134
NZ_CP011477.1\|WP_047010577.1\|192794_194822_+\|hydantoinase/oxoprolinase-family-protein	gnl\|CDD\|223223	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	8.32028e-174
NZ_CP011477.1\|WP_156165951.1\|200519_200738_+\|hypothetical-protein	gnl\|CDD\|338858	pfam13627, LPAM_2, Prokaryotic lipoprotein-attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.	0.00142209
NZ_CP011477.1\|WP_047010590.1\|210331_210670_-\|P-II-family-nitrogen-regulator	gnl\|CDD\|223424	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism].	1.87574e-58
NZ_CP011477.1\|WP_052763289.1\|195216_198012_+\|class-I-adenylate-cyclase	gnl\|CDD\|236522	PRK09450, cyaA, class I adenylate cyclase.	0
NZ_CP011477.1\|WP_047010571.1\|183439_183925_+\|pantetheine-phosphate-adenylyltransferase	gnl\|CDD\|234674	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional.	7.5426e-91

>NZ_CP011477.1|WP_052763289.1|195216_198012_+|class-I-adenylate-cyclase
MPSDPSIPTLFERGINKDRLAQVRERFFALNRERLLRTRTVLKSRQQLVLDLLPLLFHVNHPVLPGYVGAETPCGLNNYQPSSDTLARVKTHLSASFDYRRNKQPQAIHSIFLMGSCGTVAQSPSSDLDVWLCHQARLSELARELLQKKATAISRWAESLGLEIHIFLMESEQFRRGQRSQLSGEAAGTSQHYLLLDEFYRSAILLAGRYPVWWLVPPEEEINYPEYTAILRSQGFVSPEESIDFGGVADIPAGEFIGAGVWQLYKAISAPYKAILKLLLTEAYAREFPHVTTISMQLKSYLYRVDNITDSLGTNTLDADRLDPYAMVYRKLERYLSERNETARLELIRRAFYFKTAQHLSNPAANRPEWQRKLLENLVTSWQWPSERIMNLDTQYRWKLRRVREEHKLLVTELTESYRFLQDFAQQVQSPALINSQEMNLLGRKLYAAFERKRFKVEWLSPGITLSLAEEQLFFRASGYGEKRQWLVSNHAIDGQGQDDVLNSSDHLCALLCWCHCNGLIGSQTRLRLGGNPGGMNERQLLLLSQDLKHHLPAKAAAGDPLQHNAFKEPKKPHTLLAYANLGHDALSSLGGSGSPNADNAFPVTYLEMVVINSWGEVSSLAFSGPEALINGLKTYQQLILANGKNGKLWHYFRCFNDSQGKLYSNIKQLAETIAPLIKNREPAIRFVLKLSNGYYTLYRQDDELHALHAPDYPSLIQSLGRRQSQYSPIILEQHCLPDSALKTVLAHTQPDACQVFLIKDGTGVEVFISDEKASLTQFSYPHITVSELTPALALFLTRIKIEQGAEHQISVFLLHRELLQWRAENISTQGEITLPFIIDATAAPHQSGRSVFDITCNGELFRFAEYGPKQLKAVAEALLKQAHPDQVLTAPRVWLRTLSLGEQQLQSSVYLRYKRHLEELLQAVIAEPSQ
>NZ_CP011477.1|WP_047010577.1|192794_194822_+|hydantoinase/oxoprolinase-family-protein
MKNATSNTFLGVDTGGTFTDFVTVNEDGLRSYKCPSTPDHPEQAILSGIAALGLNDHVTDGSLVVVHGSTVATNAALEGKGVKTAFITNRGFADMLSIGRQTRAELYNLRPEYTPPPVPAELCLETGGRLDAQGNMIEPLTEADLAALQNQIAKLQPEAVAINLLFSFLDASAEHAIAAAMPASVFVSRSSAILPEYKEYERGMATWLNAWLGPKVADYLTALQRALAGTPLSVMQSSGGTLDAENAAQRAVNLLLSGPAGGLAAARQLGIDLNRPKLMTFDMGGTSSDVALIDGDIKLTSEGKIGPYPVAVPMVDMHTIGAGGGSIAFIDDGGLLRVGPESAGASPGPACYNKGGLCATVTDANMVLGRIPADAKLGGDMPLKLDLAQRAVANLAQQLSLGIEATAQGIIDIANEHMVRALRVISVQRGHDPADFSLSCFGGAGGLHVCALAEALGSREIIIPNNAGVFSALGMLQAPRERQLSKTLNQSLKQDKNLAQTLGAELSKLADTGREQLLKEGAIANTLHTSASVDLCYQGQSYTLNLPWDQNIAALQKAFHRAHQDRYGHELALPVQLINLRQAVRAPSALASIPQHKYLTAGEASDTLTVAFLNQAVPRYQRTQLAIGQRIAGPALICEEVATSWLAPNWIATVVDNGHLLLHPTTTDKATVDSH
>NZ_CP011477.1|WP_047010576.1|191852_192671_-|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase
MPELPEVETVCRGVSPHLLGRAIRAVTVRNASLRWPVPDDLGDVLIGQQVLSVQRRAKYLLLEFASGWLIIHLGMSGRLYLVEADAAVAKHDHIDWLLDSGRVLRYTDPRRFGAVLWMPGTEYSQHVLLSHLGPEPLSEDFTPEYLQTKAKGRKQPIKSFLMDGKIVVGVGNIYANEALFMAGIHPNRSAGSVSRARLLLLVQAIKQVLANAIIQGGTTLKDFVGGDGKPGYFKQELQVYGRGGQGCPACGAVLKEVRLAQRTTVYCGRCQR
>NZ_CP011477.1|WP_047010575.1|191403_191856_+|hypothetical-protein
MNLQNDKARFLTYWLFFPYALAIQLISATLIFTFFATPWIGIMKIAAIYILYDPSAGGRLYLDATADLQKRLWAHKHAPPNHAIRSLPEHTLVYYEILENMHQALMRKREIKQSGSHTNIRMIKQSNPEWRDLSAEIAKQAGAVHPNPLT
>NZ_CP011477.1|WP_047010574.1|188364_190080_+|gamma-glutamyltransferase
MRLFLFFTILLISFAARASDPLIVPEAASGLTENKSASYKTAIAVTANPYASEAAKAILAQGGSAVDAAITAQLVLGLVEPQSSGIGGGAFMLHWDAQTQQLSSWNGRETAPIAVEESHFLNQHGKPMGFFDAVIGGHAVGVPGVIAMLDAAHKEYGKLPWARLFQPAIDLAQTGFTLSPRLHTLLSKMPKVAVNPEISQYFFNNGHAKPVGTLLKNPAYAESLALIAQEGASAFYRGALAKKIVAAVQSDPNRSGKLQLTDLADYHAQRNEAVCTSFMAYQVCGVPPPSSGGTTVLAILGILQSLDIADKPSATPHAFIEASRLAFADRNHYVGDPDFVPVPTLGMVDHRYLKQRAALIGTKAHQGSFLPGKPPGAQPRQTTPSPELPSTSHFSIVDTQGNVVSMTTSIETAFGSRIMVGGFLLNNQLTDFSFSPINDEGEKVANRIQAGKRPRSSMSPTIVFKDGQPVLAIGSPGGARIIDYVALSLYRILAQGDSLSNAISEGHIVAMGEQVELERGRFTPGSVTSLQQLGHRVKESDQTSGIHAVRITKDGLEGVADPRREGTIAGF
>NZ_CP011477.1|WP_047010573.1|186838_187126_+|GIY-YIG-nuclease-family-protein
MHQPAVYILANRRNGTLYTGVSADLPGRIWQHKQHLVEGFSKRYQTHLLVYFECHSSMYEAIAREKQLKRWRRQWKLELIETMNPNWQDLYDTLF
>NZ_CP011477.1|WP_082117294.1|183936_184188_+|YfhL-family-4Fe-4S-dicluster-ferredoxin
MALMITDECINCDVCEPECPNEAIYQGLDIYEIDPSRCTECVGHFDEPQCQQVCPVDCIPLNPEHIETEDQLLEKYETLIAVG
>NZ_CP011477.1|WP_047010571.1|183439_183925_+|pantetheine-phosphate-adenylyltransferase
MKRIVYPGTFDPITRGHIDLVERASRLFDTVVLAVAHSEKKKPMFDLAERMQLCAEALSHLNNIEVCSFTGLTVELAKAQNCGIILRGVRTVADYEYELQLANMNRALDPSIETVFLTPGESLSYVSSSLLREIAGMGGDVSRFVPDNVMRALNSRFAKRT
>NZ_CP011477.1|WP_047010570.1|181074_183324_+|polysaccharide-biosynthesis-tyrosine-autokinase
MTSQSSAPTSGTRHQQQDDEIDLLALFGTLWDHKFFIAAITAVFMVLGVAYALLAAPVYRSNAIIQVEEQKPSLPGMDDVTEMFGGESAAVTEIELIKSRAVIGTAVNKLNLDIITQPHYFPVFGAAVSRRFNGLNGEIASPLFGLNSYAWGGEKISVSQFDVPTRLFSEEHTLIAGDKGNFSLYSPDDELILEGQIGQLAQSSGYALYVATLQANPGTRFELIRKRRLSAIIDFQAAVGASERGKDSGIIALSLENTDPEEASNILNVITEAYVRQNVERQSAEAAKSLEFLRDQLPGIKKELEQAESQLNEYQVKVGSVNISAEAEVLLEQVVEIESAIAELQLQKAELDRKYTSDHPAYQAWREQMAEQKSRKAELSTRIKDLPETQQELIGLKRDLEVGTEIYTQMLNNIQELDIVRAGTVGNVRIVDDAAVNIEEPVKPKKALIAVIATLLGGFLGVALVLVRAALNRGIENPEDIEALGLPVYASIPLSDEQRKLDRVDDKGKRLRKAKHLHPNALLAQRNPTDITIESLRSLRTSLHFAMMEAPNNIMMISGPSPNVGKSFVSGNLAAVVAQAGQKVLLIDLDLRKGYMHKMFDTSPENGASDVLSKRISLAEAIKSTKVGELSFLPRGTIPPNPSELLMSQGLSDLLNEVKDQYDLIIVDTPPVMAVTDAAIVGRHCGVTMLVTRFAMNPVKELEVTKQRFEQNGITVKGVVLNAVERRASAYGYGYGYGYYHYEYKSDKT
>NZ_CP011477.1|WP_047010569.1|179827_180961_+|polysaccharide-export-protein-Wza
MKVSTFLAGALILTTAGCTVVPGSDMGRINSVWFDDTPEDYKPASTNIDYIPINATVLSHLKSQPDYIPQRNAALEQAIDNYNYRIGPGDVLTIIVWEHPELTIPAGSFRTAAEGGNEVKADGTIFYPYAGTMAVAGKTTAEVQHLLRDKLKEVIKKPQVDVRLADFRSQRVYVSGAVQQPGVVPVTAVPLTLLDAIEQQGGLAANASWQNIQFTRNGETRTISLQKLYEKGSWSENLLLQNGDLIHVPRNDADKIFVLGEVNIPQGMLMSRNGTTLAEALATARGINENRADGRGIYVLRNAGVSTDEDGLPVYNATVYHLNANSAVGFMLADSFPLQARDVVYVAPAPITKWNRFLSQLLPTILATDSIGDVENN
>NZ_CP011477.1|WP_156165951.1|200519_200738_+|hypothetical-protein
MPGLLTHWRPAVAAIRLLICAVLLLQACGQTGPLIYPADKKAETNKNSAPNASEPNSQERDDSSAVMPSSSQ
>NZ_CP011477.1|WP_047010582.1|200746_201994_+|diaminopimelate-decarboxylase
MNPFNYQNGELYAEAVPLSTIAQHYGSPCYVYSRQYFEQRYLEYAEALKGQDSLVCYAVKANSNIAVLNVLARLGAGFDLVSVGELERVLAAGGSADKIVFSGVGKTADEMRRALDVGIYCFNVESEAELERLNTVAAEMGKQAPVSIRVNPDVDAKTHPYISTGLKDNKFGIDFELAPAVYQRAAALPNIALKGVDCHIGSQLTETKPFLDAMERVLVLIDQLAEQGIILEHLDLGGGLGVCYRDEVPPSTADYIAQVRQQLGDRKLKLMFEPGRSIAANAGVLLTKVEYLKLNEHKNFAVIDAAMNDMLRPALYSAWMNLQPVQQRSTAEPRHYDVVGPVCETGDFLAKDRELSIEAGDLLALGSSGAYGFTMSSNYNSRGRVAEVMVDGDQHYLIRERETVADLMRGETLLP
>NZ_CP011477.1|WP_047010583.1|202110_202941_+|diaminopimelate-epimerase
MLLRFTKMHGLGNDFVVIDLITQRFKIKPHHIRKIADRHFGIGCDQVLLVEIPTQPDVDFQYRIYNAEGSEVEQCGNGARCFARFVRDKRLTGKKSIKVETLAGILELEVTDNRQVRVDMGQPILDPMRIPFQAEEEQASYSLTVHDQQWQVGAVSMGNPHVVLPVDDVDNAPVETLGPSIESHSRFPQRVNVGFAQIVNRQTLRLRVFERGVGETLACGTGACAAVVSGIVQGQLDSKVNVSLPGGELSIEWQGLGQPVIMTGPATTVFEGQIQL
>NZ_CP011477.1|WP_047010584.1|202949_203651_+|DUF484-family-protein
MDSSQKKTELPSEEEVTRYLRNHPGFFLANEDLLVDLKLSHKTGKAVSLLERQVALLRERNMDMRNRLSKLLDNAQRNEQLFEQSKALILSLLEAKRADELSNTLCRHLVSDFEPVDYASLILFADPNKLGGSQLRVENPEQAREHIGGLLGSHKAVCGVLRPQELGFLFGKHADHIGSAAIMPIKPGNIDGVIAIASKDPEHFKSSMGTLFLDYIVEVVNRSLPKLMRSPFG
>NZ_CP011477.1|WP_047010585.1|205675_206887_-|alpha/beta-hydrolase
MRESALHLVTESPPWWRTLPEDFYCQSDGTELDSEYPVKVYGSAAIDRVLRSGLGAMVTAAMLPKLLKGAMGSKERHWLDFYTEMAEARDINQVFQPPADVYVEECKPSFFTRIPKDIPAVELCFDSPFTPLNPDITASYLSHKNNRRARALHWRHPEGPRPTMIFVHGVVESWYSVNSVFFSLKSFYDQGYDVVMFTLPFHGKRADSYRLFNGFGVFSGGFSQINEAVLHAVSDLRVLFNYLVERGTPSVGITGLSLGGYISALMAVVEHRLAFCIPNSPLVAPVDTMRGWQPTGHLLDLISQHSGITPLDLRQGMAIHSPLTYQPKLDPEKVMIIGGAGDRFTPPRFVRLMHSHWPESHLHWFPGNHMMHWGQGEYLKLMLRFMDSHCQGMLSDNEQQLYY
>NZ_CP011477.1|WP_047010586.1|207129_207855_+|HAD-family-hydrolase
MNDVKLICFDLDDTLWPVSTTIKQAEAVFFEHLQKLAPKLTAQYSQDAIRAHRLDYLKHYPELRHNISAWRRESLTALLKSSGHGLHSESIAEEVFIHFLEARQLVTPFDHCETTLEALSKNYQLIGLTNGNADLARIAVGQHFTAYFRAEEFGASKPEPALFKKALEVANCSPHQAVHIGDHIEDDIGGAKALGFYTLQARLTAKAPLPSDEADGHFDDWRQLPELIKGLGKPALKNILI
>NZ_CP011477.1|WP_047010587.1|207834_208032_-|hypothetical-protein
MESRINTYQNKKQLNRGAANVLTSHDRMRDQLAKDVEDFLAQGGEIQHLESYMHSALSDSDQDIF
>NZ_CP011477.1|WP_047010588.1|208451_208790_-|P-II-family-nitrogen-regulator
MKLVSAVIKPFKLDDVRAALSEIGVQGVTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKLEIAVADSLLDKVIDTVTKAASTGKIGDGKIFVTELEQVIRIRTGETGEDAI
>NZ_CP011477.1|WP_047010589.1|209017_210262_-|ammonium-transporter
MEDIIQVKYALDTFYFLVCGAFVMWMAAGFAMLESGLVRAKNTTEILTKNVALFAIACTMYLLMGYTIMYGGSAGGFLPDGWFGNSIADASVEEVLASNGDIYYSGSSDFFFQVVFVATAMSIVSGAVAERMKLWTFLAFAVVMTGVIYPLQGMWKWGGGFLDAAGFSDFAGSGVVHLCGASAALAGVLLLGARKGKYGAAGQVNAIPGANLPLATLGTFILWMGWFGFNGGSELMISNIDEANATSQVFVNTNAAASGGLIAALIVARILFGKADLTMALNGALAGLVAITAEPLTPGPIEATLIGAVGGVLVVFAILTLDKLKIDDPVGAISVHGVVGIWGLMAVPLTNSDTAFGSQIYGTVIIFAWAFGASLVVWAILKAVMGLRVTEEEEYEGVDISECGMEAYPEFTNK
>NZ_CP011477.1|WP_047010590.1|210331_210670_-|P-II-family-nitrogen-regulator
MKLITAVIKPFKLDDVREALSDIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKIEVAVADGSVDSTIEAISKSANTGKIGDGKIFVAPLEQVVRIRTGETGEDAI

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Crispr_ID: NZ_CP011477_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011477_2

215517-215841

Orphan

Consensus_repeat	Method
TCACCCCGCCCTGTAGGAGCGGGCGCCGACCGCGACAGAA	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP011477_2

>merge|NZ_CP011477|2|215517-215841|PILER-CR
TCACCCCGCCCTGTAGGAGCGGGCGCCGACCGCGACAGAAGCGACTTCAACCCCTGCCAACCCCTTCGGCCTCGGCGCGGCCTCCTACAAGCCCATCACTCCGCCCTGTAGGAGCGGGCGCCGACCGCGACAGAATCGACCTCAATCCGTGCAAACCTCTTTCGGCCTCAGCGCGGCCTCCTACAAACCCATTACCCCACCTGTAGGAGCGGGCGCCGACCGCGACAGAATTTACCTCAAGCCCTGCCAACCCCTTCGGCCTCGGCGCGGCCTCCTACAAACCCATCACCCCGCCTTGTAGGAGCGGGCGCCGACCGCGACAGAA

>NZ_CP011477|2|1|215517-215841|PILER-CR
TCACCCCGCCCTGTAGGAGCGGGCGCCGACCGCGACAGAA	GCGACTTCAACCCCTGCCAACCCCTTCGGCCTCGGCGCGGCCTCCTACAAGCCCA
TCACTCCGCCCTGTAGGAGCGGGCGCCGACCGCGACAGAA	TCGACCTCAATCCGTGCAAACCTCTTTCGGCCTCAGCGCGGCCTCCTACAAACCCATTACCCCA
CCTGTAGGAGCGGGCGCCGACCGCGACAGAATTTACCTCA	AGCCCTGCCAACCCCTTCGGCCTCGGCGCGGCCTCCTACAAACCCATCACCCCGC
CTTGTAGGAGCGGGCGCCGACCGCGACAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011477.1\|WP_047010591.1\|210761_211415_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|286740
NZ_CP011477.1\|WP_047010599.1\|218369_218672_-\|urease-subunit-gamma	unknown	unknown	gnl\|CDD\|183913
NZ_CP011477.1\|WP_047010602.1\|222280_222733_+\|transposase	unknown	unknown	gnl\|CDD\|224854
NZ_CP011477.1\|WP_047010604.1\|225187_226084_-\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379142
NZ_CP011477.1\|WP_047010587.1\|207834_208032_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011477.1\|WP_047010597.1\|216324_218028_-\|urease-subunit-alpha	unknown	unknown	gnl\|CDD\|237305
NZ_CP011477.1\|WP_047010598.1\|218024_218354_-\|urease-subunit-beta	unknown	unknown	gnl\|CDD\|237303
NZ_CP011477.1\|WP_052763290.1\|219206_220103_-\|urease-accessory-protein	unknown	unknown	gnl\|CDD\|223899
NZ_CP011477.1\|WP_047010589.1\|209017_210262_-\|ammonium-transporter	unknown	unknown	gnl\|CDD\|274697
NZ_CP011477.1\|WP_047010590.1\|210331_210670_-\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|223424
NZ_CP011477.1\|WP_047010594.1\|213589_214207_-\|urease-accessory-protein-UreG	unknown	unknown	gnl\|CDD\|349776
NZ_CP011477.1\|WP_047010601.1\|220621_222112_+\|YifB-family-Mg-chelatase-like-AAA-ATPase	unknown	unknown	gnl\|CDD\|223679
NZ_CP011477.1\|WP_047010595.1\|214231_214903_-\|urease-accessory-protein-UreF	unknown	unknown	gnl\|CDD\|223900
NZ_CP011477.1\|WP_047010596.1\|214895_215396_-\|urease-accessory-protein-UreE	unknown	unknown	gnl\|CDD\|237322
NZ_CP011477.1\|WP_047010600.1\|220297_220567_+\|accessory-factor-UbiK-family-protein	unknown	unknown	gnl\|CDD\|377337
NZ_CP011477.1\|WP_047010588.1\|208451_208790_-\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|223424
NZ_CP011477.1\|WP_047013019.1\|226212_226605_-\|cytochrome-c5-family-protein	unknown	unknown	gnl\|CDD\|225784
NZ_CP011477.1\|WP_047010603.1\|223148_225158_+\|DNA-helicase-Rep	unknown	unknown	gnl\|CDD\|130146
NZ_CP011477.1\|WP_156165952.1\|211934_212831_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223003
NZ_CP011477.1\|WP_047010593.1\|212957_213566_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225911

Protein	Function_ID	Function_description	E-value
NZ_CP011477.1\|WP_047010591.1\|210761_211415_-\|hypothetical-protein	gnl\|CDD\|286740	pfam09694, Gcw_chp, Bacterial protein of unknown function (Gcw_chp). This entry represents a conserved hypothetical protein about 240 residues in length found so far in Proteobacteria including Shewanella oneidensis and Ralstonia solanacearum, usually as part of a paralogous family. The function is unknown.	2.00026e-14
NZ_CP011477.1\|WP_047010599.1\|218369_218672_-\|urease-subunit-gamma	gnl\|CDD\|183913	PRK13241, ureA, urease subunit gamma; Provisional.	1.45497e-68
NZ_CP011477.1\|WP_047010604.1\|225187_226084_-\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	2.51478e-05
NZ_CP011477.1\|WP_047010588.1\|208451_208790_-\|P-II-family-nitrogen-regulator	gnl\|CDD\|223424	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism].	5.54833e-56
NZ_CP011477.1\|WP_047010597.1\|216324_218028_-\|urease-subunit-alpha	gnl\|CDD\|237305	PRK13207, ureC, urease subunit alpha; Reviewed.	0
NZ_CP011477.1\|WP_047010598.1\|218024_218354_-\|urease-subunit-beta	gnl\|CDD\|237303	PRK13203, ureB, urease subunit beta; Reviewed.	2.67207e-70
NZ_CP011477.1\|WP_052763290.1\|219206_220103_-\|urease-accessory-protein	gnl\|CDD\|223899	COG0829, UreH, Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones].	3.06165e-64
NZ_CP011477.1\|WP_047010589.1\|209017_210262_-\|ammonium-transporter	gnl\|CDD\|274697	TIGR03644, marine_trans_1, probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.	0
NZ_CP011477.1\|WP_047010590.1\|210331_210670_-\|P-II-family-nitrogen-regulator	gnl\|CDD\|223424	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism].	1.87574e-58
NZ_CP011477.1\|WP_047010594.1\|213589_214207_-\|urease-accessory-protein-UreG	gnl\|CDD\|349776	cd05540, UreG, urease accessory protein UreG. UreG is one of the four accessory proteins of urease. Urease is an enzyme which catalyzes the decomposition of urea to form ammonia and carbon dioxide. Bacterial urease is a trimer of three subunits which are encoded by genes ureA, ureB, and ureC. Up to four accessory proteins (ureD, ureE, ureF, and ureG) are required for urease catalytical function. UreG may play an important role in nickel incorporation of the urease metallocenter. UreG is a member of the Fer4_NifH superfamily which contains an ATP-binding domain. Proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.	6.72273e-126
NZ_CP011477.1\|WP_047010601.1\|220621_222112_+\|YifB-family-Mg-chelatase-like-AAA-ATPase	gnl\|CDD\|223679	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP011477.1\|WP_047010595.1\|214231_214903_-\|urease-accessory-protein-UreF	gnl\|CDD\|223900	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones].	5.37511e-56
NZ_CP011477.1\|WP_047010596.1\|214895_215396_-\|urease-accessory-protein-UreE	gnl\|CDD\|237322	PRK13261, ureE, urease accessory protein UreE; Provisional.	4.37665e-47
NZ_CP011477.1\|WP_047010600.1\|220297_220567_+\|accessory-factor-UbiK-family-protein	gnl\|CDD\|377337	pfam04380, BMFP, Membrane fusogenic activity. BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.	4.00248e-16
NZ_CP011477.1\|WP_047010602.1\|222280_222733_+\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.62158e-10
NZ_CP011477.1\|WP_047013019.1\|226212_226605_-\|cytochrome-c5-family-protein	gnl\|CDD\|225784	COG3245, CycB, Cytochrome c5 [Energy production and conversion].	6.092e-31
NZ_CP011477.1\|WP_047010603.1\|223148_225158_+\|DNA-helicase-Rep	gnl\|CDD\|130146	TIGR01074, ATP-dependent_DNA_helicase_Rep, ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP011477.1\|WP_156165952.1\|211934_212831_-\|hypothetical-protein	gnl\|CDD\|223003	PHA03169, PHA03169, hypothetical protein; Provisional.	0.00314266
NZ_CP011477.1\|WP_047010593.1\|212957_213566_-\|hypothetical-protein	gnl\|CDD\|225911	COG3376, HoxN, High-affinity nickel permease [Inorganic ion transport and metabolism].	5.51941e-05

>NZ_CP011477.1|WP_047010596.1|214895_215396_-|urease-accessory-protein-UreE
MLECFEHHRGAETQLELQLVLCYQERQRSRFRAKTLCGKDVGWFVERGEVLAQGDVLVASTGEKIAILAADETVSEVKSADALLLARAAYHLGNRHVPLQIMAGELRYQHDHVLDDMLKGLGLQVVVTEKPFHPENGAYHSHDGGAEHRHSHGHDSHDHHHGHAHG
>NZ_CP011477.1|WP_047010595.1|214231_214903_-|urease-accessory-protein-UreF
MASAPLLHLLHLVSPALPVGAYAYSQGLEFAVEQHWVSSLAEAEDWIGSVLSHSVGGLDLPVLQRLYRAFSNGDLAQAEYWNDYLQASRESHELLLEDRQMGEALQRLLLSLNLDIAARWPEASTPSFATAFAMAACYWQLTEADAMQGFAWSWLENQVAAAIKLVPLGQTDGQRLLLRLMPLLEQTVINAKQREDDELGVGLPRLAVASAQHETQYSRLFRS
>NZ_CP011477.1|WP_047010594.1|213589_214207_-|urease-accessory-protein-UreG
MKKPALRLGIGGPVGSGKTALVKALCARLKNRFNIAVITNDIYTREDAEFLLRHEVLEQDRILGVETGGCPHTAIREDASMNLSAVAELNKRFPDLELILIESGGDNLAATFSPELSDLTLYVIDVSAGDKIPRKGGPGITRSDLLIINKTDLAPLVGASLDVMDKDATRMRGSKPFVFTNLKDESGLDEVVTFVIEQGMLTSAA
>NZ_CP011477.1|WP_047010593.1|212957_213566_-|hypothetical-protein
MDIGFLPSMLAMGFAAGVLHAFDADHLAAVSGLSGSDGKRSVRFALHWGLGHGVAVIIIAAAVIVFGAAIPERFSAFAESAVAWMLILIGVHTFYHLWQQHKGNTVHDGKRSNAMLVGLVHGSAGSAPLLALIPAANFSSPAWGMLHILLFNFGLLLAMLGVGATLRRGLLIAANRDGRLQISLQGSLASFAVGFGVFLLLG
>NZ_CP011477.1|WP_156165952.1|211934_212831_-|hypothetical-protein
MRSFAVMMLGLLPAMTLAAELKIGPGQSYLVEKDNSQLVLDYLEIGDAAHIRFAEGIAAWRVQAKTAVIGDNVVIDGRGSVGESGISGVSANNCKNQLNGQGGAHGAPGTDGVSMRLQLGIESLGSLNILADGGNGGNGGSGGNGADNNDDCAGERGGDGGDGGDGGVGGSGGEITILYRVLGSDLEPIDVSQRVKVSAEPGKGGAGGRGGSSGEGGGGHYITKKTLAGNRQWVSGGEAGLSGSVGLSGEPGSSGAVMIDSLMMQSPAASQSSAKENRSLLQRLEALERRVKVLENAK
>NZ_CP011477.1|WP_047010591.1|210761_211415_-|hypothetical-protein
MKNVKNLLAASVAAASMTLVAAPASAVDVSASASVASLYLWRGFDLSDGSPAVSGDITISEAGFYAGVWGSSGDDTNGQEVDYYAGFATEAGPVSIDLSVWNYVYPGSSAGFVDNGDTYGDLSEVILGLGVGPVSLTIYDNIAGAQGYNYYTLGYDVGSFSFLLGGTENNNEDANYAHFDVSYAYNDNLAFTFSQMMDEDNDDDLKFVVSYSLPISM
>NZ_CP011477.1|WP_047010590.1|210331_210670_-|P-II-family-nitrogen-regulator
MKLITAVIKPFKLDDVREALSDIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKIEVAVADGSVDSTIEAISKSANTGKIGDGKIFVAPLEQVVRIRTGETGEDAI
>NZ_CP011477.1|WP_047010589.1|209017_210262_-|ammonium-transporter
MEDIIQVKYALDTFYFLVCGAFVMWMAAGFAMLESGLVRAKNTTEILTKNVALFAIACTMYLLMGYTIMYGGSAGGFLPDGWFGNSIADASVEEVLASNGDIYYSGSSDFFFQVVFVATAMSIVSGAVAERMKLWTFLAFAVVMTGVIYPLQGMWKWGGGFLDAAGFSDFAGSGVVHLCGASAALAGVLLLGARKGKYGAAGQVNAIPGANLPLATLGTFILWMGWFGFNGGSELMISNIDEANATSQVFVNTNAAASGGLIAALIVARILFGKADLTMALNGALAGLVAITAEPLTPGPIEATLIGAVGGVLVVFAILTLDKLKIDDPVGAISVHGVVGIWGLMAVPLTNSDTAFGSQIYGTVIIFAWAFGASLVVWAILKAVMGLRVTEEEEYEGVDISECGMEAYPEFTNK
>NZ_CP011477.1|WP_047010588.1|208451_208790_-|P-II-family-nitrogen-regulator
MKLVSAVIKPFKLDDVRAALSEIGVQGVTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKLEIAVADSLLDKVIDTVTKAASTGKIGDGKIFVTELEQVIRIRTGETGEDAI
>NZ_CP011477.1|WP_047010587.1|207834_208032_-|hypothetical-protein
MESRINTYQNKKQLNRGAANVLTSHDRMRDQLAKDVEDFLAQGGEIQHLESYMHSALSDSDQDIF
>NZ_CP011477.1|WP_047010597.1|216324_218028_-|urease-subunit-alpha
MSKIDRRAYADMYGPTVGDRVRLGDTALWIEVEKDFTTYGEEVKFGGGKVIRDGMGQGQLGSAHTPDTVITNALILDHWGVVKADVAIKAGRITAIGKAGNPDIQPDVTIIIGPGTEVIAGEGQILTAGAIDAHIHFICPQQIEEALMSGVTTMIGGGTGPATGTNATTCTPGPWHIGKMLQAAESFPMNLGFLGKGNASLPESLEEQVKAGVMGLKLHEDWGTTPASIDCCLSVAEKYDVQVAIHTDTLNESGFVEDTLAAFKGRTIHTYHTEGAGGGHAPDIIKACGSANVLPSSTNPTRPYTINTVDEHLDMLMVCHHLDPNIPEDVAFADSRIRKETIAAEDILHDLGAFSMISSDSQAMGRVGEVVCRTWQTAHKMKVQRGPLPEDSAYSDNFRARRYIAKYTINPAITQGLAHEVGSIEVGKLADLVLWKPMFFGIKPSMIIKGGMIAAAPMGDPNASIPTPQPVHYRPMFGAFGKACTATSVSFVSQAALASNLAETLGLQRPLVAVKNCRNITKADMVLNDYQPVMEVDTNTYEVKADGVVLTCEPATELPLAQRYCLF
>NZ_CP011477.1|WP_047010598.1|218024_218354_-|urease-subunit-beta
MIPGEVDVAKGEIELNVGRQTLIVEVTNSGDRPIQVGSHYHFYETNLALQFDREAAKGFRLNIAAGTAVRFEPGQSREVELVALSGERRIYGFRGDVMGPLDGQAGGKS
>NZ_CP011477.1|WP_047010599.1|218369_218672_-|urease-subunit-gamma
MELSPRDKDKLLIFTAALLAERRKAKGLKLNYPEAIALITAEVMEGAREGKSVAQMMSAGKQVLGREDVMDGVAEMIHEVQVEATFPDGTKLVTVHNPIV
>NZ_CP011477.1|WP_052763290.1|219206_220103_-|urease-accessory-protein
MNIPYAVVADVAGQQSDKIARSWSAAIELELLKGPGRTDIRHVLHKGPLRIQRPFYPEGECCHVYLLHPPGGMVPGDELQVAIDLGTGAEALLTTPSAGKAYKSDKQKTAQLQGITAHISSDACLEWLPQETIIFDGAEAELRNDFHLSGNAKLLAWDIVVLGRRASGESFDAGRCLQRFTILRDGRPLLNERTLWEGGSDMLRANWGMANRWVSGSLFATLEADRATLDVLREGLAAQPYFDKCQAEWGLSQRRDVFMARYLGNSPEHCRKGFEYLWGQLRPLLNGREACRPRIWNT
>NZ_CP011477.1|WP_047010600.1|220297_220567_+|accessory-factor-UbiK-family-protein
MSKPDFFSQLAEQANRIIKDGPDIQQDIEEKIKVLLQSRLRKMDIVSRDEFDAQLAVLNRTRAKLEAMEVQLAELSRQLEALENNKSAD
>NZ_CP011477.1|WP_047010601.1|220621_222112_+|YifB-family-Mg-chelatase-like-AAA-ATPase
MPLATVFSRAKLGVKAPLVTVEVHLSSGLPAFHIVGLPEATVRESRDRVRSALINSRFDFPVSRITVNLAPADLPKEGGRFDLPIAIGILLASAQIPVKAVDGYEFIGELGLSGELRAVDAALPAAVQTHHVNKVLILPASNAGLAAIVDSQHLREAQSLLDVVAHLQGQSSLPFGSDAPPGTGTTKTIDYPDLSDVLGQQTAKRALEIAAAGGHSLLLSGPPGTGKTLLANRLAGILPPLNEQEERDIAIVQSIAGKPLNLHRPFRAPHHTASAVALVGGGSQPRPGEISLAHGGILFLDELPEYPRKVLEVLREPLESGEVMISRAAQQLTFPARFQLVAAMNPCPCGYDGDPTQDCRCTPDQIQRYRQKISGPLLDRIDLRITVPRLPPGVLQSLSAGESSAMVRERVCAARALQLIRSGDCNANLSATEVRQHCVLGQQCKELMVKAEQRLGLSARAHHRIIKIARTIADLASEPKITLPHLQEAIAYRGDF
>NZ_CP011477.1|WP_047010602.1|222280_222733_+|transposase
MTYQAHSKNLRQGRRSFPGQIYLITTCTEHRRHYFSNLWVGRCVVNALRDAQYASTLAFVVMPDHLHWLMALEDKSNLSQTVQFVKTHAARQCNRLIGRTGKLWQSGFHDHALRRDEDIQACARYIIANPLRAGLVKEIGHYPLWDAVYF
>NZ_CP011477.1|WP_047010603.1|223148_225158_+|DNA-helicase-Rep
MSKLNDRQREAVHYIDGPLLVLAGAGSGKTSVITRKMAYLIEKCGIPARHIAAVTFTNKAAREMKERVSQLVKGQAAKGLTVSTFHNLGMNILRKEYRALNYKSGFSIFDSQDAQALIRDLLMQEHGGETDKAELIQSRISNWKNDFILPEHAIQLAESPADMLCAQAYARYQNALKAYNALDFDDLIMLPAQLFDDRPDILDKWQQKIRYMLVDEYQDTNTSQYRLIKQLVGNRQGLTVVGDDDQSIYAWRGAKPENLSLLGKDYPHLKVVMLEQNYRSTARILKAANVVIANNPHELNKALWSELGYGDPIRIIKCRNEDAECERVVTEILSHKIASQQGRFGNYAVLYRGNHQSRLLELKLQAHQIPYKLSGGTSFFGRNEIKDIMAYLRLIINQSDDNAFLRIINVPRRKIGTSTLESLGRYATEREISLYSACEEFGLAQQLPEAALKRLQEFTQWLDKLRRRCYEDDAITAIRQLCNDINYLDWLIQNSSSVAVAERRMANVTTLIDSLEKNLKNDEENAGFENAISRLVLRDLLERQEDEQESPDQVQLMTLHAAKGLEFPYVFMIGMEEGLLPHQNSIDDGMVEEERRLCYVGITRAQKVLTLSYCAKRKSFGQFTSCEPSRFLDELPKDDVEWEGRGDNNPAVNQKKADQTLASLKSMFD
>NZ_CP011477.1|WP_047010604.1|225187_226084_-|trypsin-like-peptidase-domain-containing-protein
MVIKDLAVFGLAACVVSLMACGGDSSSGGVSSANDGGESSSRFEFSEPNNNQIRPGVLVQASGSQCTSNFLFALNDETVYLGVAAHCFSLDTNAGIDPCETANLAIGFDQVIVENASQPAELAYSSWSAMQQAGEQPGSNTCQFNDFALVKLHPDDIANIHPAVFSVGGPISLFSGVASVGDPVLIYGRSSATLDADPLVVRQGEIVDVLGNGWSYDLLLDGLVAPGDSGGPVLTGDGRALAVINTFGLVFGTDNLLSPPVRGGAVNLDMALQYAKDNGFIQPGVSLLTWADFTRPLL
>NZ_CP011477.1|WP_047013019.1|226212_226605_-|cytochrome-c5-family-protein
MLCVAVSAWALSDSQRDEVTSRIQPAGKVCLQGDSSCGAATASAGGGEKSGKEVYEGSCQGCHAVGAGNAPKFGDAAAWSDRIAQGKDTLYTHAIEGLNNVGMMPAKGLCMSCSDDEIKAAVDYMVENSQ

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP011477_2	2.3\|215756\|55\|NZ_CP011477\|PILER-CR	215756-215810	55	NZ_CP011477.1	216125-216179	0	1.0

1. spacer 2.3|215756|55|NZ_CP011477|PILER-CR matches to position: 216125-216179, mismatch: 0, identity: 1.0

tttacctcaagccctgccaaccccttcggcctcggcgcggcctcctacaaaccca	CRISPR spacer
tttacctcaagccctgccaaccccttcggcctcggcgcggcctcctacaaaccca	Protospacer
*******************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1787158 : 1797970

Hokovirus(16.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052763443.1\|1787158_1789411_+	response regulator	A0A1V0SGX0	Hokovirus	2.8e-40	32.9
WP_156166016.1\|1789436_1790015_-	hypothetical protein	NA	NA	NA	NA
WP_047011760.1\|1790084_1791872_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.5e-36	34.0
WP_047011761.1\|1791975_1793889_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.2e-73	38.4
WP_047011762.1\|1793970_1794423_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	4.7e-24	45.5
WP_047011763.1\|1794444_1794660_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_047013264.1\|1794878_1795919_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	6.9e-111	60.8
WP_047011764.1\|1795936_1796311_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_156166017.1\|1796303_1796813_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_047013265.1\|1796866_1797970_-	hypothetical protein	A0A0F6YPT7	Sinorhizobium_phage	7.7e-52	53.6

DBSCAN-SWA_2

2018551 : 2028850

uncultured_Mediterranean_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047011937.1\|2018551_2019658_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	A0A0K0KVL7	Prochlorococcus_phage	4.7e-33	29.1
WP_052763469.1\|2019807_2020332_+\|tRNA	tRNA adenosine(34) deaminase TadA	S4VYZ2	Pandoravirus	2.3e-06	35.8
WP_082117429.1\|2020358_2021855_-	membrane-bound lytic murein transglycosylase MltF	G0YQ82	Erwinia_phage	1.0e-06	33.1
WP_047011938.1\|2021951_2025899_+	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	2.7e-115	57.0
WP_047011939.1\|2026041_2027913_+	protein translocase subunit SecD	A0A1B1IVP7	uncultured_Mediterranean_phage	2.2e-06	23.9
WP_047011940.1\|2027926_2028850_+	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	6.9e-46	39.9

DBSCAN-SWA_3

2141890 : 2172239

uncultured_Mediterranean_phage(20.0%)

tail,tRNA,integrase,protease

attL 2157530:2157544|attR 2178838:2178852

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_156166026.1\|2141890_2143024_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_047012024.1\|2143064_2143502_-	NUDIX hydrolase	NA	NA	NA	NA
WP_082117437.1\|2143596_2144244_-	pseudouridine synthase	NA	NA	NA	NA
WP_047012025.1\|2144394_2145651_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	4.4e-19	85.2
WP_052763628.1\|2145722_2145938_-	cold-shock protein	Q9AZD3	Lactococcus_phage	6.7e-13	55.4
WP_082117545.1\|2146157_2146484_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	3.5e-13	45.2
WP_047012027.1\|2146516_2148784_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.3e-162	42.2
WP_022957154.1\|2148885_2149104_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_047012028.1\|2149256_2149961_-	arginyltransferase	NA	NA	NA	NA
WP_047012029.1\|2149957_2150689_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_047012030.1\|2150706_2151657_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.2e-64	44.7
WP_156166087.1\|2151947_2154224_+	cell division protein FtsK	A0A218M9A2	Mycobacterium_phage	9.2e-84	48.6
WP_052763480.1\|2154229_2154835_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_047012032.1\|2154834_2156136_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	4.6e-80	38.8
WP_052763481.1\|2156178_2156553_+	fluoride efflux transporter CrcB	NA	NA	NA	NA
WP_047012033.1\|2156580_2157882_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.1e-92	43.5
2157530:2157544	attL	NA	NA	NA	NA
WP_047012034.1\|2157884_2159288_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_047012035.1\|2159325_2160678_+	glutathione-disulfide reductase	NA	NA	NA	NA
WP_047012036.1\|2160770_2162909_-\|tail,protease	tail-specific protease	A0A0R6PIZ1	Moraxella_phage	4.0e-89	34.4
WP_052763482.1\|2163088_2163460_+	DUF4440 domain-containing protein	NA	NA	NA	NA
WP_047012037.1\|2163590_2164826_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_156166088.1\|2166377_2167712_+	reverse transcriptase	NA	NA	NA	NA
WP_047012039.1\|2167704_2169777_+	RNA-directed DNA polymerase	A0A0H4TEY7	Erysipelothrix_phage	8.0e-26	24.2
WP_082117438.1\|2170105_2170777_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_047012041.1\|2170997_2172239_+\|integrase	site-specific integrase	NA	NA	NA	NA
2178838:2178852	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011477

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection