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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_LN849008 Bordetella pertussis strain D420 chromosome 1 4 crisprs DEDDh,cas3,csa3,DinG 0 0 27 0

Results visualization

1. NZ_LN849008
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LN849008_1 585476-585560 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LN849008_2 958884-958993 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LN849008_3 3241440-3241556 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LN849008_4 3956204-3956297 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 254958 : 308390 45 Planktothrix_phage(40.0%) transposase NA
DBSCAN-SWA_2 332787 : 392284 52 Natrialba_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_3 402921 : 455909 51 Planktothrix_phage(20.0%) transposase,tRNA NA
DBSCAN-SWA_4 499778 : 560289 51 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) protease,transposase,tRNA NA
DBSCAN-SWA_5 568221 : 621809 47 Bacillus_phage(25.0%) protease,transposase,tRNA NA
DBSCAN-SWA_6 890194 : 949494 48 Acinetobacter_phage(27.27%) transposase,tRNA NA
DBSCAN-SWA_7 955649 : 1009390 48 Salmonella_phage(33.33%) transposase NA
DBSCAN-SWA_8 1058328 : 1098278 28 Pseudomonas_phage(33.33%) protease,transposase,integrase,tRNA attL 1055576:1055594|attR 1075464:1075482
DBSCAN-SWA_9 1108205 : 1155823 46 Bovine_alphaherpesvirus(10.0%) protease,transposase,holin,tRNA NA
DBSCAN-SWA_10 1331682 : 1435124 93 Bacillus_virus(27.27%) transposase,tRNA NA
DBSCAN-SWA_11 1465510 : 1536481 52 uncultured_Mediterranean_phage(25.0%) protease,transposase NA
DBSCAN-SWA_12 1577552 : 1659687 60 Bacillus_virus(25.0%) transposase,tRNA NA
DBSCAN-SWA_13 1663798 : 1704467 42 Salmonella_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_14 1784144 : 1836297 45 Salmonella_phage(25.0%) transposase,tRNA NA
DBSCAN-SWA_15 1880222 : 1948309 59 Streptococcus_virus(11.11%) transposase,tRNA NA
DBSCAN-SWA_16 1984258 : 2039849 47 Brazilian_cedratvirus(25.0%) transposase NA
DBSCAN-SWA_17 2273656 : 2343308 55 Staphylococcus_phage(16.67%) transposase,tRNA NA
DBSCAN-SWA_18 2354804 : 2403161 45 Erysipelothrix_phage(16.67%) transposase NA
DBSCAN-SWA_19 2414365 : 2482741 59 Klosneuvirus(22.22%) protease,transposase,tRNA NA
DBSCAN-SWA_20 2536074 : 2593353 49 Klosneuvirus(15.38%) transposase,tRNA NA
DBSCAN-SWA_21 2839934 : 2898178 53 Planktothrix_phage(28.57%) transposase,tRNA NA
DBSCAN-SWA_22 2940458 : 3006958 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_23 3190410 : 3342057 117 uncultured_Mediterranean_phage(15.79%) transposase,holin,tRNA NA
DBSCAN-SWA_24 3363008 : 3435496 58 Bacillus_virus(16.67%) transposase NA
DBSCAN-SWA_25 3449003 : 3502521 44 Bacillus_phage(33.33%) transposase,holin NA
DBSCAN-SWA_26 3566979 : 3640141 57 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_27 3651428 : 3751540 106 uncultured_Caudovirales_phage(14.29%) transposase,tail,protease,terminase,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage