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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011371 [Polyangium] brachysporum strain DSM 7029 chromosome, complete genome 2 crisprs Cas9_archaeal,csa3,cas3,DinG,DEDDh,PD-DExK,WYL 0 1 3 0

Results visualization

1. NZ_CP011371
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011371_1 278587-278709 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011371_2 1776736-1776836 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP011371_2 2.1|1776774|25|NZ_CP011371|CRISPRCasFinder 1776774-1776798 25 NZ_LR594669 Variovorax sp. SRS16 plasmid 4 316371-316395 3 0.88
NZ_CP011371_2 2.1|1776774|25|NZ_CP011371|CRISPRCasFinder 1776774-1776798 25 NZ_CP029835 Azospirillum ramasamyi strain M2T2B2 plasmid unnamed5, complete sequence 205993-206017 3 0.88
NZ_CP011371_2 2.1|1776774|25|NZ_CP011371|CRISPRCasFinder 1776774-1776798 25 NC_016588 Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence 206976-207000 3 0.88
NZ_CP011371_2 2.1|1776774|25|NZ_CP011371|CRISPRCasFinder 1776774-1776798 25 NZ_CP029835 Azospirillum ramasamyi strain M2T2B2 plasmid unnamed5, complete sequence 56878-56902 4 0.84
NZ_CP011371_2 2.1|1776774|25|NZ_CP011371|CRISPRCasFinder 1776774-1776798 25 NZ_CP044989 Deinococcus sp. AJ005 plasmid p380k, complete sequence 338709-338733 5 0.8

1. spacer 2.1|1776774|25|NZ_CP011371|CRISPRCasFinder matches to NZ_LR594669 (Variovorax sp. SRS16 plasmid 4) position: , mismatch: 3, identity: 0.88

acggccgcccgaagccgctcgcacg	CRISPR spacer
ccggccgcccgaaggcgctcgcacc	Protospacer
 ************* ********* 

2. spacer 2.1|1776774|25|NZ_CP011371|CRISPRCasFinder matches to NZ_CP029835 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed5, complete sequence) position: , mismatch: 3, identity: 0.88

acggccgcccgaagccgctcgcacg	CRISPR spacer
ccggccgccagaagccgctcgcaca	Protospacer
 ******** **************.

3. spacer 2.1|1776774|25|NZ_CP011371|CRISPRCasFinder matches to NC_016588 (Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence) position: , mismatch: 3, identity: 0.88

acggccgcccgaagccgctcgcacg	CRISPR spacer
ccggccgccagaagccgctcgcaca	Protospacer
 ******** **************.

4. spacer 2.1|1776774|25|NZ_CP011371|CRISPRCasFinder matches to NZ_CP029835 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed5, complete sequence) position: , mismatch: 4, identity: 0.84

acggccgcccgaagccgctcgcacg	CRISPR spacer
ccggccgcccgcagccgcgcgcaca	Protospacer
 ********** ****** *****.

5. spacer 2.1|1776774|25|NZ_CP011371|CRISPRCasFinder matches to NZ_CP044989 (Deinococcus sp. AJ005 plasmid p380k, complete sequence) position: , mismatch: 5, identity: 0.8

acggccgcccgaagccgctcgcacg	CRISPR spacer
cgtcccgcccgaagccgctggcacg	Protospacer
    *************** *****

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 382800 : 433407 50 uncultured_virus(40.0%) transposase,protease NA
DBSCAN-SWA_2 2395989 : 2439220 50 Pseudomonas_phage(38.89%) terminase,tail,plate,coat NA
DBSCAN-SWA_3 4704796 : 4741930 45 Acidithiobacillus_phage(34.38%) terminase,head,portal,capsid NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage