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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP026079 Staphylococcus aureus strain FDAARGOS_9 chromosome, complete genome 13 crisprs cas3,WYL,RT,csa3,DEDDh,DinG 15 2 6 1

Results visualization

1. NZ_CP026079
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026079_1 49673-50003 Unclear NA
5 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026079_2 55328-55406 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026079_3 445090-445192 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026079_4 684893-684977 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026079_5 1119336-1119469 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026079_6 1197157-1197235 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026079_7 1361712-1361792 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026079_8 1469685-1469770 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026079_9 1482010-1482091 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026079_10 1617874-1617963 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026079_11 1633485-1633637 Orphan NA
2 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026079_12 2069551-2069635 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026079_13 2814158-2814239 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP026079_1 1.1|49711|20|NZ_CP026079|CRT 49711-49730 20 NZ_CP026079.1 97284-97303 0 1.0
NZ_CP026079_1 1.1|49711|20|NZ_CP026079|CRT 49711-49730 20 NZ_CP026079.1 221806-221825 0 1.0
NZ_CP026079_1 1.1|49711|20|NZ_CP026079|CRT 49711-49730 20 NZ_CP026079.1 561733-561752 0 1.0
NZ_CP026079_1 1.1|49711|20|NZ_CP026079|CRT 49711-49730 20 NZ_CP026079.1 684978-684997 0 1.0
NZ_CP026079_1 1.1|49711|20|NZ_CP026079|CRT 49711-49730 20 NZ_CP026079.1 1736102-1736121 0 1.0
NZ_CP026079_1 1.1|49711|20|NZ_CP026079|CRT 49711-49730 20 NZ_CP026079.1 1884112-1884131 0 1.0
NZ_CP026079_1 1.1|49711|20|NZ_CP026079|CRT 49711-49730 20 NZ_CP026079.1 2055013-2055032 0 1.0
NZ_CP026079_1 1.1|49711|20|NZ_CP026079|CRT 49711-49730 20 NZ_CP026079.1 2069531-2069550 0 1.0
NZ_CP026079_1 1.1|49711|20|NZ_CP026079|CRT 49711-49730 20 NZ_CP026079.1 2339479-2339498 0 1.0
NZ_CP026079_1 1.1|49711|20|NZ_CP026079|CRT 49711-49730 20 NZ_CP026079.1 2551110-2551129 0 1.0
NZ_CP026079_1 1.1|49711|20|NZ_CP026079|CRT 49711-49730 20 NZ_CP026079.1 2648150-2648169 0 1.0
NZ_CP026079_1 1.1|49711|20|NZ_CP026079|CRT 49711-49730 20 NZ_CP026079.1 2814138-2814157 0 1.0
NZ_CP026079_1 1.2|49769|21|NZ_CP026079|CRT 49769-49789 21 NZ_CP026079.1 49652-49672 0 1.0
NZ_CP026079_1 1.3|49828|21|NZ_CP026079|CRT 49828-49848 21 NZ_CP026079.1 49652-49672 0 1.0
NZ_CP026079_2 2.1|55352|31|NZ_CP026079|CRISPRCasFinder 55352-55382 31 NZ_CP026079.1 561750-561780 0 1.0
NZ_CP026079_4 4.1|684919|33|NZ_CP026079|CRISPRCasFinder 684919-684951 33 NZ_CP026079.1 2339362-2339394 0 1.0
NZ_CP026079_11 11.2|1633596|23|NZ_CP026079|PILER-CR 1633596-1633618 23 NZ_CP026079.1 55387-55409 0 1.0
NZ_CP026079_11 11.2|1633596|23|NZ_CP026079|PILER-CR 1633596-1633618 23 NZ_CP026079.1 914095-914117 0 1.0
NZ_CP026079_11 11.2|1633596|23|NZ_CP026079|PILER-CR 1633596-1633618 23 NZ_CP026079.1 1942865-1942887 0 1.0
NZ_CP026079_11 11.2|1633596|23|NZ_CP026079|PILER-CR 1633596-1633618 23 NZ_CP026079.1 2551100-2551122 0 1.0
NZ_CP026079_11 11.3|1633550|34|NZ_CP026079|CRISPRCasFinder 1633550-1633583 34 NZ_CP026079.1 55374-55407 0 1.0
NZ_CP026079_11 11.3|1633550|34|NZ_CP026079|CRISPRCasFinder 1633550-1633583 34 NZ_CP026079.1 2551102-2551135 0 1.0
NZ_CP026079_1 1.1|49711|20|NZ_CP026079|CRT 49711-49730 20 NZ_CP026079.1 561788-561807 1 0.95
NZ_CP026079_1 1.1|49711|20|NZ_CP026079|CRT 49711-49730 20 NZ_CP026079.1 561843-561862 1 0.95
NZ_CP026079_1 1.1|49711|20|NZ_CP026079|CRT 49711-49730 20 NZ_CP026079.1 1942875-1942894 1 0.95
NZ_CP026079_1 1.1|49711|20|NZ_CP026079|CRT 49711-49730 20 NZ_CP026079.1 2035270-2035289 1 0.95
NZ_CP026079_1 1.1|49711|20|NZ_CP026079|CRT 49711-49730 20 NZ_CP026079.1 2289503-2289522 1 0.95
NZ_CP026079_1 1.1|49711|20|NZ_CP026079|CRT 49711-49730 20 NZ_CP026079.1 2334994-2335013 1 0.95
NZ_CP026079_1 1.1|49711|20|NZ_CP026079|CRT 49711-49730 20 NZ_CP026079.1 2545461-2545480 1 0.95
NZ_CP026079_1 1.1|49711|20|NZ_CP026079|CRT 49711-49730 20 NZ_CP026079.1 2744096-2744115 1 0.95
NZ_CP026079_1 1.2|49769|21|NZ_CP026079|CRT 49769-49789 21 NZ_CP026079.1 96071-96091 1 0.952
NZ_CP026079_1 1.3|49828|21|NZ_CP026079|CRT 49828-49848 21 NZ_CP026079.1 96071-96091 1 0.952
NZ_CP026079_1 1.4|49887|20|NZ_CP026079|CRT 49887-49906 20 NZ_CP026079.1 914088-914107 1 0.95
NZ_CP026079_1 1.4|49887|20|NZ_CP026079|CRT 49887-49906 20 NZ_CP026079.1 1726752-1726771 1 0.95
NZ_CP026079_2 2.1|55352|31|NZ_CP026079|CRISPRCasFinder 55352-55382 31 NZ_CP026079.1 561805-561835 1 0.968
NZ_CP026079_2 2.1|55352|31|NZ_CP026079|CRISPRCasFinder 55352-55382 31 NZ_CP026079.1 2035123-2035153 1 0.968
NZ_CP026079_6 6.1|1197180|33|NZ_CP026079|CRISPRCasFinder 1197180-1197212 33 NZ_CP026079.1 42346-42378 1 0.97
NZ_CP026079_6 6.1|1197180|33|NZ_CP026079|CRISPRCasFinder 1197180-1197212 33 NZ_CP026079.1 2813869-2813901 1 0.97
NZ_CP026079_7 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder 1361737-1361767 31 NZ_CP026079.1 42406-42436 1 0.968
NZ_CP026079_7 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder 1361737-1361767 31 NZ_CP026079.1 42462-42492 1 0.968
NZ_CP026079_7 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder 1361737-1361767 31 NZ_CP026079.1 42518-42548 1 0.968
NZ_CP026079_7 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder 1361737-1361767 31 NZ_CP026079.1 42574-42604 1 0.968
NZ_CP026079_11 11.2|1633596|23|NZ_CP026079|PILER-CR 1633596-1633618 23 NZ_CP026079.1 1884102-1884124 1 0.957
NZ_CP026079_11 11.2|1633596|23|NZ_CP026079|PILER-CR 1633596-1633618 23 NZ_CP026079.1 2648157-2648179 1 0.957
NZ_CP026079_11 11.3|1633550|34|NZ_CP026079|CRISPRCasFinder 1633550-1633583 34 NZ_CP026079.1 1942867-1942900 1 0.971
NZ_CP026079_12 12.1|2069577|33|NZ_CP026079|CRISPRCasFinder 2069577-2069609 33 NZ_CP026079.1 2339362-2339394 1 0.97
NZ_CP026079_13 13.1|2814182|34|NZ_CP026079|CRISPRCasFinder 2814182-2814215 34 NZ_CP026079.1 2339362-2339395 1 0.971
NZ_CP026079_1 1.4|49887|20|NZ_CP026079|CRT 49887-49906 20 NZ_CP026079.1 1791796-1791815 2 0.9
NZ_CP026079_1 1.5|49945|21|NZ_CP026079|CRT 49945-49965 21 NZ_CP026079.1 221747-221767 2 0.905
NZ_CP026079_1 1.5|49945|21|NZ_CP026079|CRT 49945-49965 21 NZ_CP026079.1 1372534-1372554 2 0.905
NZ_CP026079_1 1.5|49945|21|NZ_CP026079|CRT 49945-49965 21 NZ_CP026079.1 1737444-1737464 2 0.905
NZ_CP026079_1 1.5|49945|21|NZ_CP026079|CRT 49945-49965 21 NZ_CP026079.1 1737503-1737523 2 0.905
NZ_CP026079_1 1.5|49945|21|NZ_CP026079|CRT 49945-49965 21 NZ_CP026079.1 2251050-2251070 2 0.905
NZ_CP026079_1 1.5|49945|21|NZ_CP026079|CRT 49945-49965 21 NZ_CP026079.1 2339420-2339440 2 0.905
NZ_CP026079_1 1.5|49945|21|NZ_CP026079|CRT 49945-49965 21 NZ_CP026079.1 2545518-2545538 2 0.905
NZ_CP026079_4 4.1|684919|33|NZ_CP026079|CRISPRCasFinder 684919-684951 33 NZ_CP026079.1 2251096-2251128 2 0.939
NZ_CP026079_5 5.1|1119353|46|NZ_CP026079|PILER-CR 1119353-1119398 46 NZ_CP026079.1 1115703-1115748 2 0.957
NZ_CP026079_5 5.2|1119416|37|NZ_CP026079|PILER-CR 1119416-1119452 37 NZ_CP026079.1 1115766-1115802 2 0.946
NZ_CP026079_6 6.1|1197180|33|NZ_CP026079|CRISPRCasFinder 1197180-1197212 33 NZ_CP026079.1 42402-42434 2 0.939
NZ_CP026079_6 6.1|1197180|33|NZ_CP026079|CRISPRCasFinder 1197180-1197212 33 NZ_CP026079.1 42458-42490 2 0.939
NZ_CP026079_6 6.1|1197180|33|NZ_CP026079|CRISPRCasFinder 1197180-1197212 33 NZ_CP026079.1 42514-42546 2 0.939
NZ_CP026079_6 6.1|1197180|33|NZ_CP026079|CRISPRCasFinder 1197180-1197212 33 NZ_CP026079.1 42570-42602 2 0.939
NZ_CP026079_6 6.1|1197180|33|NZ_CP026079|CRISPRCasFinder 1197180-1197212 33 NZ_CP026079.1 1593861-1593893 2 0.939
NZ_CP026079_7 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder 1361737-1361767 31 NZ_CP026079.1 42350-42380 2 0.935
NZ_CP026079_7 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder 1361737-1361767 31 NZ_CP026079.1 221733-221763 2 0.935
NZ_CP026079_7 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder 1361737-1361767 31 NZ_CP026079.1 485418-485448 2 0.935
NZ_CP026079_7 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder 1361737-1361767 31 NZ_CP026079.1 783434-783464 2 0.935
NZ_CP026079_7 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder 1361737-1361767 31 NZ_CP026079.1 1372538-1372568 2 0.935
NZ_CP026079_7 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder 1361737-1361767 31 NZ_CP026079.1 1737448-1737478 2 0.935
NZ_CP026079_7 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder 1361737-1361767 31 NZ_CP026079.1 2054941-2054971 2 0.935
NZ_CP026079_7 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder 1361737-1361767 31 NZ_CP026079.1 2251054-2251084 2 0.935
NZ_CP026079_7 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder 1361737-1361767 31 NZ_CP026079.1 2339406-2339436 2 0.935
NZ_CP026079_7 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder 1361737-1361767 31 NZ_CP026079.1 2545504-2545534 2 0.935
NZ_CP026079_7 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder 1361737-1361767 31 NZ_CP026079.1 2648096-2648126 2 0.935
NZ_CP026079_7 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder 1361737-1361767 31 NZ_CP026079.1 2813873-2813903 2 0.935
NZ_CP026079_11 11.2|1633596|23|NZ_CP026079|PILER-CR 1633596-1633618 23 NZ_CP026079.1 1361796-1361818 2 0.913
NZ_CP026079_11 11.2|1633596|23|NZ_CP026079|PILER-CR 1633596-1633618 23 NZ_CP026079.1 1726759-1726781 2 0.913
NZ_CP026079_11 11.2|1633596|23|NZ_CP026079|PILER-CR 1633596-1633618 23 NZ_CP026079.1 2545451-2545473 2 0.913
NZ_CP026079_11 11.3|1633550|34|NZ_CP026079|CRISPRCasFinder 1633550-1633583 34 NZ_CP026079.1 914082-914115 2 0.941
NZ_CP026079_11 11.3|1633550|34|NZ_CP026079|CRISPRCasFinder 1633550-1633583 34 NZ_CP026079.1 2334988-2335021 2 0.941

1. spacer 1.1|49711|20|NZ_CP026079|CRT matches to position: 97284-97303, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaa	CRISPR spacer
cagagaatttcgaaaagaaa	Protospacer
********************

2. spacer 1.1|49711|20|NZ_CP026079|CRT matches to position: 221806-221825, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaa	CRISPR spacer
cagagaatttcgaaaagaaa	Protospacer
********************

3. spacer 1.1|49711|20|NZ_CP026079|CRT matches to position: 561733-561752, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaa	CRISPR spacer
cagagaatttcgaaaagaaa	Protospacer
********************

4. spacer 1.1|49711|20|NZ_CP026079|CRT matches to position: 684978-684997, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaa	CRISPR spacer
cagagaatttcgaaaagaaa	Protospacer
********************

5. spacer 1.1|49711|20|NZ_CP026079|CRT matches to position: 1736102-1736121, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaa	CRISPR spacer
cagagaatttcgaaaagaaa	Protospacer
********************

6. spacer 1.1|49711|20|NZ_CP026079|CRT matches to position: 1884112-1884131, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaa	CRISPR spacer
cagagaatttcgaaaagaaa	Protospacer
********************

7. spacer 1.1|49711|20|NZ_CP026079|CRT matches to position: 2055013-2055032, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaa	CRISPR spacer
cagagaatttcgaaaagaaa	Protospacer
********************

8. spacer 1.1|49711|20|NZ_CP026079|CRT matches to position: 2069531-2069550, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaa	CRISPR spacer
cagagaatttcgaaaagaaa	Protospacer
********************

9. spacer 1.1|49711|20|NZ_CP026079|CRT matches to position: 2339479-2339498, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaa	CRISPR spacer
cagagaatttcgaaaagaaa	Protospacer
********************

10. spacer 1.1|49711|20|NZ_CP026079|CRT matches to position: 2551110-2551129, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaa	CRISPR spacer
cagagaatttcgaaaagaaa	Protospacer
********************

11. spacer 1.1|49711|20|NZ_CP026079|CRT matches to position: 2648150-2648169, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaa	CRISPR spacer
cagagaatttcgaaaagaaa	Protospacer
********************

12. spacer 1.1|49711|20|NZ_CP026079|CRT matches to position: 2814138-2814157, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaa	CRISPR spacer
cagagaatttcgaaaagaaa	Protospacer
********************

13. spacer 1.2|49769|21|NZ_CP026079|CRT matches to position: 49652-49672, mismatch: 0, identity: 1.0

cagagaaattggatttccaat	CRISPR spacer
cagagaaattggatttccaat	Protospacer
*********************

14. spacer 1.3|49828|21|NZ_CP026079|CRT matches to position: 49652-49672, mismatch: 0, identity: 1.0

cagagaaattggatttccaat	CRISPR spacer
cagagaaattggatttccaat	Protospacer
*********************

15. spacer 2.1|55352|31|NZ_CP026079|CRISPRCasFinder matches to position: 561750-561780, mismatch: 0, identity: 1.0

ggcaatgcaagttggcggggccccaacacag	CRISPR spacer
ggcaatgcaagttggcggggccccaacacag	Protospacer
*******************************

16. spacer 4.1|684919|33|NZ_CP026079|CRISPRCasFinder matches to position: 2339362-2339394, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
*********************************

17. spacer 11.2|1633596|23|NZ_CP026079|PILER-CR matches to position: 55387-55409, mismatch: 0, identity: 1.0

tttcgaaaagaaattctacaaac	CRISPR spacer
tttcgaaaagaaattctacaaac	Protospacer
***********************

18. spacer 11.2|1633596|23|NZ_CP026079|PILER-CR matches to position: 914095-914117, mismatch: 0, identity: 1.0

tttcgaaaagaaattctacaaac	CRISPR spacer
tttcgaaaagaaattctacaaac	Protospacer
***********************

19. spacer 11.2|1633596|23|NZ_CP026079|PILER-CR matches to position: 1942865-1942887, mismatch: 0, identity: 1.0

tttcgaaaagaaattctacaaac	CRISPR spacer
tttcgaaaagaaattctacaaac	Protospacer
***********************

20. spacer 11.2|1633596|23|NZ_CP026079|PILER-CR matches to position: 2551100-2551122, mismatch: 0, identity: 1.0

tttcgaaaagaaattctacaaac	CRISPR spacer
tttcgaaaagaaattctacaaac	Protospacer
***********************

21. spacer 11.3|1633550|34|NZ_CP026079|CRISPRCasFinder matches to position: 55374-55407, mismatch: 0, identity: 1.0

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacacagagaatttcgaaaagaaattctacaa	Protospacer
**********************************

22. spacer 11.3|1633550|34|NZ_CP026079|CRISPRCasFinder matches to position: 2551102-2551135, mismatch: 0, identity: 1.0

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacacagagaatttcgaaaagaaattctacaa	Protospacer
**********************************

23. spacer 1.1|49711|20|NZ_CP026079|CRT matches to position: 561788-561807, mismatch: 1, identity: 0.95

cagagaatttcgaaaagaaa	CRISPR spacer
cagagaaattcgaaaagaaa	Protospacer
******* ************

24. spacer 1.1|49711|20|NZ_CP026079|CRT matches to position: 561843-561862, mismatch: 1, identity: 0.95

cagagaatttcgaaaagaaa	CRISPR spacer
caaagaatttcgaaaagaaa	Protospacer
**.*****************

25. spacer 1.1|49711|20|NZ_CP026079|CRT matches to position: 1942875-1942894, mismatch: 1, identity: 0.95

cagagaatttcgaaaagaaa	CRISPR spacer
caaagaatttcgaaaagaaa	Protospacer
**.*****************

26. spacer 1.1|49711|20|NZ_CP026079|CRT matches to position: 2035270-2035289, mismatch: 1, identity: 0.95

cagagaatttcgaaaagaaa	CRISPR spacer
cagagaatttcgtaaagaaa	Protospacer
************ *******

27. spacer 1.1|49711|20|NZ_CP026079|CRT matches to position: 2289503-2289522, mismatch: 1, identity: 0.95

cagagaatttcgaaaagaaa	CRISPR spacer
cagagattttcgaaaagaaa	Protospacer
****** *************

28. spacer 1.1|49711|20|NZ_CP026079|CRT matches to position: 2334994-2335013, mismatch: 1, identity: 0.95

cagagaatttcgaaaagaaa	CRISPR spacer
cagagaatttcgataagaaa	Protospacer
************* ******

29. spacer 1.1|49711|20|NZ_CP026079|CRT matches to position: 2545461-2545480, mismatch: 1, identity: 0.95

cagagaatttcgaaaagaaa	CRISPR spacer
cagagaatttcaaaaagaaa	Protospacer
***********.********

30. spacer 1.1|49711|20|NZ_CP026079|CRT matches to position: 2744096-2744115, mismatch: 1, identity: 0.95

cagagaatttcgaaaagaaa	CRISPR spacer
cagagaatttctaaaagaaa	Protospacer
*********** ********

31. spacer 1.2|49769|21|NZ_CP026079|CRT matches to position: 96071-96091, mismatch: 1, identity: 0.952

cagagaaattggatttccaat	CRISPR spacer
cagagaaattggattcccaat	Protospacer
***************.*****

32. spacer 1.3|49828|21|NZ_CP026079|CRT matches to position: 96071-96091, mismatch: 1, identity: 0.952

cagagaaattggatttccaat	CRISPR spacer
cagagaaattggattcccaat	Protospacer
***************.*****

33. spacer 1.4|49887|20|NZ_CP026079|CRT matches to position: 914088-914107, mismatch: 1, identity: 0.95

aagagaatttcgaaaagaaa	CRISPR spacer
aaaagaatttcgaaaagaaa	Protospacer
**.*****************

34. spacer 1.4|49887|20|NZ_CP026079|CRT matches to position: 1726752-1726771, mismatch: 1, identity: 0.95

aagagaatttcgaaaagaaa	CRISPR spacer
aagagaatttcgaaaggaaa	Protospacer
***************.****

35. spacer 2.1|55352|31|NZ_CP026079|CRISPRCasFinder matches to position: 561805-561835, mismatch: 1, identity: 0.968

ggcaatgcaagttggcggggccccaacacag	CRISPR spacer
ggtaatgcaagttggcggggccccaacacag	Protospacer
**.****************************

36. spacer 2.1|55352|31|NZ_CP026079|CRISPRCasFinder matches to position: 2035123-2035153, mismatch: 1, identity: 0.968

ggcaatgcaagttggcggggccccaacacag	CRISPR spacer
ggcaatggaagttggcggggccccaacacag	Protospacer
******* ***********************

37. spacer 6.1|1197180|33|NZ_CP026079|CRISPRCasFinder matches to position: 42346-42378, mismatch: 1, identity: 0.97

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctggcggaaagtcagcttacaataatg	Protospacer
*** *****************************

38. spacer 6.1|1197180|33|NZ_CP026079|CRISPRCasFinder matches to position: 2813869-2813901, mismatch: 1, identity: 0.97

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctggcggaaagtcagcttacaataatg	Protospacer
*** *****************************

39. spacer 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder matches to position: 42406-42436, mismatch: 1, identity: 0.968

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacggaaagtcagcttacaataatgtg	Protospacer
*******.***********************

40. spacer 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder matches to position: 42462-42492, mismatch: 1, identity: 0.968

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacggaaagtcagcttacaataatgtg	Protospacer
*******.***********************

41. spacer 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder matches to position: 42518-42548, mismatch: 1, identity: 0.968

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacggaaagtcagcttacaataatgtg	Protospacer
*******.***********************

42. spacer 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder matches to position: 42574-42604, mismatch: 1, identity: 0.968

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacggaaagtcagcttacaataatgtg	Protospacer
*******.***********************

43. spacer 11.2|1633596|23|NZ_CP026079|PILER-CR matches to position: 1884102-1884124, mismatch: 1, identity: 0.957

tttcgaaaagaaattctacaaac	CRISPR spacer
tttcgaaaagaaattctacagac	Protospacer
********************.**

44. spacer 11.2|1633596|23|NZ_CP026079|PILER-CR matches to position: 2648157-2648179, mismatch: 1, identity: 0.957

tttcgaaaagaaattctacaaac	CRISPR spacer
tttcgaaaagaaattctacagac	Protospacer
********************.**

45. spacer 11.3|1633550|34|NZ_CP026079|CRISPRCasFinder matches to position: 1942867-1942900, mismatch: 1, identity: 0.971

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacacaaagaatttcgaaaagaaattctacaa	Protospacer
********.*************************

46. spacer 12.1|2069577|33|NZ_CP026079|CRISPRCasFinder matches to position: 2339362-2339394, mismatch: 1, identity: 0.97

tgggccccaacacagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
************ ********************

47. spacer 13.1|2814182|34|NZ_CP026079|CRISPRCasFinder matches to position: 2339362-2339395, mismatch: 1, identity: 0.971

atgggccccaacaaagagaaattggattctcaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
*****************************.****

48. spacer 1.4|49887|20|NZ_CP026079|CRT matches to position: 1791796-1791815, mismatch: 2, identity: 0.9

aagagaatttcgaaaagaaa	CRISPR spacer
aagagacttttgaaaagaaa	Protospacer
****** ***.*********

49. spacer 1.5|49945|21|NZ_CP026079|CRT matches to position: 221747-221767, mismatch: 2, identity: 0.905

cagaagcttacgataagtcag	CRISPR spacer
cagaagctgacgaaaagtcag	Protospacer
******** **** *******

50. spacer 1.5|49945|21|NZ_CP026079|CRT matches to position: 1372534-1372554, mismatch: 2, identity: 0.905

cagaagcttacgataagtcag	CRISPR spacer
cagaagctgacgaaaagtcag	Protospacer
******** **** *******

51. spacer 1.5|49945|21|NZ_CP026079|CRT matches to position: 1737444-1737464, mismatch: 2, identity: 0.905

cagaagcttacgataagtcag	CRISPR spacer
cagaagctgacgaaaagtcag	Protospacer
******** **** *******

52. spacer 1.5|49945|21|NZ_CP026079|CRT matches to position: 1737503-1737523, mismatch: 2, identity: 0.905

cagaagcttacgataagtcag	CRISPR spacer
cagaagctgacgaaaagtcag	Protospacer
******** **** *******

53. spacer 1.5|49945|21|NZ_CP026079|CRT matches to position: 2251050-2251070, mismatch: 2, identity: 0.905

cagaagcttacgataagtcag	CRISPR spacer
cagaagctgacgaaaagtcag	Protospacer
******** **** *******

54. spacer 1.5|49945|21|NZ_CP026079|CRT matches to position: 2339420-2339440, mismatch: 2, identity: 0.905

cagaagcttacgataagtcag	CRISPR spacer
cagaagctgacgaaaagtcag	Protospacer
******** **** *******

55. spacer 1.5|49945|21|NZ_CP026079|CRT matches to position: 2545518-2545538, mismatch: 2, identity: 0.905

cagaagcttacgataagtcag	CRISPR spacer
cagaagctgacgaaaagtcag	Protospacer
******** **** *******

56. spacer 4.1|684919|33|NZ_CP026079|CRISPRCasFinder matches to position: 2251096-2251128, mismatch: 2, identity: 0.939

attgggaatccaatttctctttgttggggccca	CRISPR spacer
attgggaatacaatttctctttgttggggtcca	Protospacer
********* *******************.***

57. spacer 5.1|1119353|46|NZ_CP026079|PILER-CR matches to position: 1115703-1115748, mismatch: 2, identity: 0.957

acaaagataaacctaattatcaatttggtggacacaacagtgttga	CRISPR spacer
acaaagataaacctaattatcaattcggtggacacaatagtgttga	Protospacer
*************************.***********.********

58. spacer 5.2|1119416|37|NZ_CP026079|PILER-CR matches to position: 1115766-1115802, mismatch: 2, identity: 0.946

ttccaaaagtaagtggtcaaaatgaaggtcaacaaac	CRISPR spacer
ttccaaaagtaagcggccaaaatgaaggtcaacaaac	Protospacer
*************.**.********************

59. spacer 6.1|1197180|33|NZ_CP026079|CRISPRCasFinder matches to position: 42402-42434, mismatch: 2, identity: 0.939

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacggaaagtcagcttacaataatg	Protospacer
*** *****.***********************

60. spacer 6.1|1197180|33|NZ_CP026079|CRISPRCasFinder matches to position: 42458-42490, mismatch: 2, identity: 0.939

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacggaaagtcagcttacaataatg	Protospacer
*** *****.***********************

61. spacer 6.1|1197180|33|NZ_CP026079|CRISPRCasFinder matches to position: 42514-42546, mismatch: 2, identity: 0.939

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacggaaagtcagcttacaataatg	Protospacer
*** *****.***********************

62. spacer 6.1|1197180|33|NZ_CP026079|CRISPRCasFinder matches to position: 42570-42602, mismatch: 2, identity: 0.939

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacggaaagtcagcttacaataatg	Protospacer
*** *****.***********************

63. spacer 6.1|1197180|33|NZ_CP026079|CRISPRCasFinder matches to position: 1593861-1593893, mismatch: 2, identity: 0.939

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaggctggcggaaagtcagcttacaataatg	Protospacer
*** .****************************

64. spacer 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder matches to position: 42350-42380, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtg	Protospacer
*****.*.***********************

65. spacer 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder matches to position: 221733-221763, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

66. spacer 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder matches to position: 485418-485448, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

67. spacer 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder matches to position: 783434-783464, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtg	Protospacer
*****.*.***********************

68. spacer 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder matches to position: 1372538-1372568, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

69. spacer 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder matches to position: 1737448-1737478, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

70. spacer 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder matches to position: 2054941-2054971, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtg	Protospacer
*****.*.***********************

71. spacer 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder matches to position: 2251054-2251084, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

72. spacer 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder matches to position: 2339406-2339436, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

73. spacer 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder matches to position: 2545504-2545534, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

74. spacer 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder matches to position: 2648096-2648126, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

75. spacer 7.1|1361737|31|NZ_CP026079|CRISPRCasFinder matches to position: 2813873-2813903, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtg	Protospacer
*****.*.***********************

76. spacer 11.2|1633596|23|NZ_CP026079|PILER-CR matches to position: 1361796-1361818, mismatch: 2, identity: 0.913

tttcgaaaagaaattctacaaac	CRISPR spacer
tttcaaaaagaaattctacagac	Protospacer
****.***************.**

77. spacer 11.2|1633596|23|NZ_CP026079|PILER-CR matches to position: 1726759-1726781, mismatch: 2, identity: 0.913

tttcgaaaagaaattctacaaac	CRISPR spacer
tttcgaaaggaaattctacagac	Protospacer
********.***********.**

78. spacer 11.2|1633596|23|NZ_CP026079|PILER-CR matches to position: 2545451-2545473, mismatch: 2, identity: 0.913

tttcgaaaagaaattctacaaac	CRISPR spacer
tttcaaaaagaaattctacagac	Protospacer
****.***************.**

79. spacer 11.3|1633550|34|NZ_CP026079|CRISPRCasFinder matches to position: 914082-914115, mismatch: 2, identity: 0.941

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacaaaaagaatttcgaaaagaaattctacaa	Protospacer
****** *.*************************

80. spacer 11.3|1633550|34|NZ_CP026079|CRISPRCasFinder matches to position: 2334988-2335021, mismatch: 2, identity: 0.941

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacacagagaatttcgataagaaattccacaa	Protospacer
******************* *********.****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP026079_8 8.1|1469711|34|NZ_CP026079|CRISPRCasFinder 1469711-1469744 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
NZ_CP026079_8 8.1|1469711|34|NZ_CP026079|CRISPRCasFinder 1469711-1469744 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765
NZ_CP026079_9 9.1|1482035|32|NZ_CP026079|CRISPRCasFinder 1482035-1482066 32 NC_016587 Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence 41454-41485 9 0.719
NZ_CP026079_9 9.1|1482035|32|NZ_CP026079|CRISPRCasFinder 1482035-1482066 32 NZ_CP020399 Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence 296489-296520 10 0.688

1. spacer 8.1|1469711|34|NZ_CP026079|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

cccagttgcaaacaataaagctaaagatatgcaa	CRISPR spacer
agcatataaaagctataaagctaaagatatgcaa	Protospacer
  **  *. **.* ********************

2. spacer 8.1|1469711|34|NZ_CP026079|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

cccagttgcaaacaataaagctaaagatatgcaa	CRISPR spacer
tactgtttataacaataaagctaaagttattcaa	Protospacer
. * ***   **************** *** ***

3. spacer 9.1|1482035|32|NZ_CP026079|CRISPRCasFinder matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 9, identity: 0.719

aaaagtaggagcgcctgcgctaagcgcatgca	CRISPR spacer
tggaggtggagcgcctgcgcaaggcgcatgag	Protospacer
 ..**  ************* *.******* .

4. spacer 9.1|1482035|32|NZ_CP026079|CRISPRCasFinder matches to NZ_CP020399 (Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

aaaagtaggagcgcctgcgctaagcgcatgca	CRISPR spacer
tcgaagccgagcgcctgcgcgtagcgcatgcg	Protospacer
  .*.   ************  *********.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 83800 : 98441 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_2 110412 : 118233 10 Pandoravirus(16.67%) NA NA
DBSCAN-SWA_3 1613901 : 1712098 126 Staphylococcus_phage(86.96%) holin,portal,terminase,protease,tail,head,capsid,integrase,coat attL 1637486:1637503|attR 1662306:1662323
DBSCAN-SWA_4 1772093 : 1879259 100 Staphylococcus_phage(92.59%) transposase,tRNA,protease NA
DBSCAN-SWA_5 2010922 : 2019965 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_6 2638142 : 2646615 9 Synechococcus_phage(33.33%) NA NA
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP026079.1|WP_000384171.1|1854347_1854572_+|hypothetical-protein 1854347_1854572_+ 74 aa aa NA LuxR_C_like NA 1772093-1879259 yes