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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP026072 Staphylococcus aureus strain FDAARGOS_35 chromosome, complete genome 8 crisprs DEDDh,cas3,WYL,csa3 6 1 13 0

Results visualization

1. NZ_CP026072
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026072_1 421749-421993 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026072_2 744431-744512 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026072_3 788619-788704 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026072_4 951009-951101 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026072_5 1218854-1218955 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026072_6 2013908-2013999 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026072_7 2129688-2129881 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026072_8 2255219-2255369 Orphan NA
2 spacers
csa3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP026072_2 2.1|744455|34|NZ_CP026072|CRISPRCasFinder 744455-744488 34 NZ_CP026072.1 103958-103991 0 1.0
NZ_CP026072_2 2.1|744455|34|NZ_CP026072|CRISPRCasFinder 744455-744488 34 NZ_CP026072.1 194477-194510 0 1.0
NZ_CP026072_7 7.2|2129767|36|NZ_CP026072|CRT 2129767-2129802 36 NZ_CP026072.1 417849-417884 0 1.0
NZ_CP026072_3 3.1|788649|26|NZ_CP026072|CRISPRCasFinder 788649-788674 26 NZ_CP026072.1 1691096-1691121 1 0.962
NZ_CP026072_7 7.2|2129767|36|NZ_CP026072|CRT 2129767-2129802 36 NZ_CP026072.1 2650212-2650247 1 0.972
NZ_CP026072_1 1.4|421938|37|NZ_CP026072|CRT 421938-421974 37 NZ_CP026072.1 421994-422030 2 0.946
NZ_CP026072_3 3.1|788649|26|NZ_CP026072|CRISPRCasFinder 788649-788674 26 NZ_CP026072.1 679735-679760 2 0.923
NZ_CP026072_7 7.1|2129711|33|NZ_CP026072|CRT 2129711-2129743 33 NZ_CP026072.1 194523-194555 2 0.939
NZ_CP026072_7 7.1|2129711|33|NZ_CP026072|CRT 2129711-2129743 33 NZ_CP026072.1 417796-417828 2 0.939
NZ_CP026072_7 7.1|2129711|33|NZ_CP026072|CRT 2129711-2129743 33 NZ_CP026072.1 788606-788638 2 0.939
NZ_CP026072_7 7.1|2129711|33|NZ_CP026072|CRT 2129711-2129743 33 NZ_CP026072.1 1854409-1854441 2 0.939
NZ_CP026072_7 7.1|2129711|33|NZ_CP026072|CRT 2129711-2129743 33 NZ_CP026072.1 2492133-2492165 2 0.939
NZ_CP026072_7 7.2|2129767|36|NZ_CP026072|CRT 2129767-2129802 36 NZ_CP026072.1 2481327-2481362 2 0.944
NZ_CP026072_7 7.2|2129767|36|NZ_CP026072|CRT 2129767-2129802 36 NZ_CP026072.1 2830308-2830343 2 0.944
NZ_CP026072_7 7.3|2129826|33|NZ_CP026072|CRT 2129826-2129858 33 NZ_CP026072.1 103913-103945 2 0.939
NZ_CP026072_7 7.3|2129826|33|NZ_CP026072|CRT 2129826-2129858 33 NZ_CP026072.1 194523-194555 2 0.939
NZ_CP026072_7 7.3|2129826|33|NZ_CP026072|CRT 2129826-2129858 33 NZ_CP026072.1 417796-417828 2 0.939
NZ_CP026072_7 7.3|2129826|33|NZ_CP026072|CRT 2129826-2129858 33 NZ_CP026072.1 788606-788638 2 0.939
NZ_CP026072_7 7.3|2129826|33|NZ_CP026072|CRT 2129826-2129858 33 NZ_CP026072.1 1854409-1854441 2 0.939
NZ_CP026072_7 7.3|2129826|33|NZ_CP026072|CRT 2129826-2129858 33 NZ_CP026072.1 2492133-2492165 2 0.939

1. spacer 2.1|744455|34|NZ_CP026072|CRISPRCasFinder matches to position: 103958-103991, mismatch: 0, identity: 1.0

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
**********************************

2. spacer 2.1|744455|34|NZ_CP026072|CRISPRCasFinder matches to position: 194477-194510, mismatch: 0, identity: 1.0

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
**********************************

3. spacer 7.2|2129767|36|NZ_CP026072|CRT matches to position: 417849-417884, mismatch: 0, identity: 1.0

tagagaatttcaaaaagaaattctacagacaatgca	CRISPR spacer
tagagaatttcaaaaagaaattctacagacaatgca	Protospacer
************************************

4. spacer 3.1|788649|26|NZ_CP026072|CRISPRCasFinder matches to position: 1691096-1691121, mismatch: 1, identity: 0.962

cggggccccaacacagaagctggcgg	CRISPR spacer
cggggccccaacaaagaagctggcgg	Protospacer
************* ************

5. spacer 7.2|2129767|36|NZ_CP026072|CRT matches to position: 2650212-2650247, mismatch: 1, identity: 0.972

tagagaatttcaaaaagaaattctacagacaatgca	CRISPR spacer
tagagaatttcgaaaagaaattctacagacaatgca	Protospacer
***********.************************

6. spacer 1.4|421938|37|NZ_CP026072|CRT matches to position: 421994-422030, mismatch: 2, identity: 0.946

ctgttgaaattggtgatcctatttctctctgttgggg	CRISPR spacer
ctgttggaattggtgatcctatttctctctgttgtgg	Protospacer
******.*************************** **

7. spacer 3.1|788649|26|NZ_CP026072|CRISPRCasFinder matches to position: 679735-679760, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggcgg	CRISPR spacer
cggggccccaacacagaggctggtgg	Protospacer
*****************.*****.**

8. spacer 7.1|2129711|33|NZ_CP026072|CRT matches to position: 194523-194555, mismatch: 2, identity: 0.939

cagaagctgacagaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
***********..********************

9. spacer 7.1|2129711|33|NZ_CP026072|CRT matches to position: 417796-417828, mismatch: 2, identity: 0.939

cagaagctgacagaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
***********..********************

10. spacer 7.1|2129711|33|NZ_CP026072|CRT matches to position: 788606-788638, mismatch: 2, identity: 0.939

cagaagctgacagaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
***********..********************

11. spacer 7.1|2129711|33|NZ_CP026072|CRT matches to position: 1854409-1854441, mismatch: 2, identity: 0.939

cagaagctgacagaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
***********..********************

12. spacer 7.1|2129711|33|NZ_CP026072|CRT matches to position: 2492133-2492165, mismatch: 2, identity: 0.939

cagaagctgacagaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
***********..********************

13. spacer 7.2|2129767|36|NZ_CP026072|CRT matches to position: 2481327-2481362, mismatch: 2, identity: 0.944

tagagaatttcaaaaagaaattctacagacaatgca	CRISPR spacer
tagagaatttcgaaaggaaattctacagacaatgca	Protospacer
***********.***.********************

14. spacer 7.2|2129767|36|NZ_CP026072|CRT matches to position: 2830308-2830343, mismatch: 2, identity: 0.944

tagagaatttcaaaaagaaattctacagacaatgca	CRISPR spacer
tagagaatttcgaaaagaaattctacaggcaatgca	Protospacer
***********.****************.*******

15. spacer 7.3|2129826|33|NZ_CP026072|CRT matches to position: 103913-103945, mismatch: 2, identity: 0.939

cagaaggtgacgaaaagtcagcatacaataatg	CRISPR spacer
cagaagatgacgaaaagtcagcttacaataatg	Protospacer
******.*************** **********

16. spacer 7.3|2129826|33|NZ_CP026072|CRT matches to position: 194523-194555, mismatch: 2, identity: 0.939

cagaaggtgacgaaaagtcagcatacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
****** *************** **********

17. spacer 7.3|2129826|33|NZ_CP026072|CRT matches to position: 417796-417828, mismatch: 2, identity: 0.939

cagaaggtgacgaaaagtcagcatacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
****** *************** **********

18. spacer 7.3|2129826|33|NZ_CP026072|CRT matches to position: 788606-788638, mismatch: 2, identity: 0.939

cagaaggtgacgaaaagtcagcatacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
****** *************** **********

19. spacer 7.3|2129826|33|NZ_CP026072|CRT matches to position: 1854409-1854441, mismatch: 2, identity: 0.939

cagaaggtgacgaaaagtcagcatacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
****** *************** **********

20. spacer 7.3|2129826|33|NZ_CP026072|CRT matches to position: 2492133-2492165, mismatch: 2, identity: 0.939

cagaaggtgacgaaaagtcagcatacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
****** *************** **********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP026072_3 3.1|788649|26|NZ_CP026072|CRISPRCasFinder 788649-788674 26 NZ_CP022541 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence 333735-333760 5 0.808
NZ_CP026072_3 3.1|788649|26|NZ_CP026072|CRISPRCasFinder 788649-788674 26 NZ_CP034332 Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence 3359-3384 5 0.808
NZ_CP026072_3 3.1|788649|26|NZ_CP026072|CRISPRCasFinder 788649-788674 26 NZ_CP022605 Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence 715511-715536 5 0.808

1. spacer 3.1|788649|26|NZ_CP026072|CRISPRCasFinder matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcgg	CRISPR spacer
taaggcctcaacacagaagctggcgt	Protospacer
...****.***************** 

2. spacer 3.1|788649|26|NZ_CP026072|CRISPRCasFinder matches to NZ_CP034332 (Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcgg	CRISPR spacer
gtaggcccagacacagaagctggcgg	Protospacer
  .***** .****************

3. spacer 3.1|788649|26|NZ_CP026072|CRISPRCasFinder matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcgg	CRISPR spacer
tcagggccaaacacagaagctggcgg	Protospacer
. .** ** *****************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 4903 : 14733 11 Staphylococcus_phage(90.91%) tail,plate,holin NA
DBSCAN-SWA_2 441082 : 499494 75 Staphylococcus_phage(83.61%) holin,terminase,tRNA,plate,head,portal,tail,capsid NA
DBSCAN-SWA_3 551088 : 559561 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_4 579547 : 607109 30 Enterococcus_phage(25.0%) bacteriocin,transposase,protease NA
DBSCAN-SWA_5 721740 : 742949 33 Staphylococcus_phage(77.78%) coat,terminase,integrase attL 724462:724478|attR 740397:740413
DBSCAN-SWA_6 822521 : 837194 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_7 849166 : 856986 10 Pandoravirus(16.67%) NA NA
DBSCAN-SWA_8 1174848 : 1247667 86 Staphylococcus_phage(44.44%) transposase,coat,terminase,integrase attL 1164140:1164155|attR 1250932:1250947
DBSCAN-SWA_9 2381017 : 2466671 116 Staphylococcus_phage(91.76%) capsid,terminase,holin,protease,portal,head,tail,integrase attL 2381167:2381184|attR 2429888:2429905
DBSCAN-SWA_10 2526703 : 2645128 110 Staphylococcus_phage(90.77%) transposase,protease,tRNA NA
DBSCAN-SWA_11 2772227 : 2781270 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_12 2850408 : 2858720 7 Caulobacter_phage(16.67%) tRNA NA
DBSCAN-SWA_13 2913844 : 2951538 58 Staphylococcus_phage(89.47%) terminase,protease,integrase,portal,head,tail,capsid attL 2910665:2910679|attR 2938611:2938625
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage