CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011342	Escherichia coli K-12 substr. GM4792 chromosome, complete genome	4 crisprs	WYL,DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	0	11	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011342_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011342_1

409865-410009

Orphan

Consensus_repeat	Method
ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011342_1

>merge|NZ_CP011342|1|409865-410009|CRISPRCasFinder
ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAA

>NZ_CP011342|1|1|409865-410009|CRISPRCasFinder
ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAA	GGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCG
ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011342.2\|WP_001221319.1\|414538_415741_-\|exonuclease-subunit-SbcD	unknown	unknown	gnl\|CDD\|182871
NZ_CP011342.2\|WP_000484048.1\|402491_403607_+\|diguanylate-cyclase-AdrA	unknown	unknown	gnl\|CDD\|182329
NZ_CP011342.2\|WP_001295329.1\|419774_421148_+\|proline-specific-permease-ProY	unknown	unknown	gnl\|CDD\|182566
NZ_CP011342.2\|WP_000698951.1\|411395_414542_-\|exonuclease-subunit-SbcC	unknown	unknown	gnl\|CDD\|182330
NZ_CP011342.2\|WP_001276420.1\|406216_406894_+\|AroM-family-protein	unknown	unknown	gnl\|CDD\|182491
NZ_CP011342.2\|WP_001298537.1\|407896_408808_-\|recombination-associated-protein-RdgC	unknown	unknown	gnl\|CDD\|225521
NZ_CP011342.2\|WP_001266503.1\|423799_424870_+\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|234666
NZ_CP011342.2\|WP_001295331.1\|403623_404433_-\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
NZ_CP011342.2\|WP_001009885.1\|423125_423707_-\|ACP-phosphodiesterase	unknown	unknown	gnl\|CDD\|182207
NZ_CP011342.2\|WP_000149639.1\|418379_419699_+\|branched-chain-amino-acid-transporter-carrier-protein-BrnQ	unknown	unknown	gnl\|CDD\|185331
NZ_CP011342.2\|WP_001310597.1\|421303_423121_+\|maltodextrin-glucosidase	unknown	unknown	gnl\|CDD\|236759
NZ_CP011342.2\|WP_120795376.1\|407735_407819_+\|protein-YkiD	unknown	unknown	unknown
NZ_CP011342.2\|WP_000158159.1\|404552_405011_+\|YaiI/YqxD-family-protein	unknown	unknown	gnl\|CDD\|178882
NZ_CP011342.2\|WP_001219309.1\|408932_409841_+\|fructokinase	unknown	unknown	gnl\|CDD\|236565
NZ_CP011342.2\|WP_001142439.1\|405767_405959_+\|protein-YaiA	unknown	unknown	gnl\|CDD\|182421
NZ_CP011342.2\|WP_000941942.1\|406965_407250_+\|pyrimidine/purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|182565
NZ_CP011342.2\|WP_000893623.1\|416677_417973_+\|phosphate-regulon-sensor-histidine-kinase-PhoR	unknown	unknown	gnl\|CDD\|182895
NZ_CP011342.2\|WP_001326926.1\|410085_411270_-\|MFS-transporter-AraJ	unknown	unknown	gnl\|CDD\|182234
NZ_CP011342.2\|WP_000193393.1\|405193_405718_+\|shikimate-kinase-AroL	unknown	unknown	gnl\|CDD\|235153
NZ_CP011342.2\|WP_000113933.1\|415930_416620_+\|phosphate-response-regulator-transcription-factor-PhoB	unknown	unknown	gnl\|CDD\|182277

Protein	Function_ID	Function_description	E-value
NZ_CP011342.2\|WP_001221319.1\|414538_415741_-\|exonuclease-subunit-SbcD	gnl\|CDD\|182871	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional.	0
NZ_CP011342.2\|WP_000484048.1\|402491_403607_+\|diguanylate-cyclase-AdrA	gnl\|CDD\|182329	PRK10245, adrA, diguanylate cyclase AdrA; Provisional.	0
NZ_CP011342.2\|WP_001295329.1\|419774_421148_+\|proline-specific-permease-ProY	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
NZ_CP011342.2\|WP_000698951.1\|411395_414542_-\|exonuclease-subunit-SbcC	gnl\|CDD\|182330	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.	0
NZ_CP011342.2\|WP_001276420.1\|406216_406894_+\|AroM-family-protein	gnl\|CDD\|182491	PRK10481, PRK10481, hypothetical protein; Provisional.	2.13662e-120
NZ_CP011342.2\|WP_001298537.1\|407896_408808_-\|recombination-associated-protein-RdgC	gnl\|CDD\|225521	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair].	0
NZ_CP011342.2\|WP_001266503.1\|423799_424870_+\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0
NZ_CP011342.2\|WP_001295331.1\|403623_404433_-\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	1.87564e-128
NZ_CP011342.2\|WP_001009885.1\|423125_423707_-\|ACP-phosphodiesterase	gnl\|CDD\|182207	PRK10045, PRK10045, ACP phosphodiesterase.	3.03368e-136
NZ_CP011342.2\|WP_000149639.1\|418379_419699_+\|branched-chain-amino-acid-transporter-carrier-protein-BrnQ	gnl\|CDD\|185331	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ.	0
NZ_CP011342.2\|WP_001310597.1\|421303_423121_+\|maltodextrin-glucosidase	gnl\|CDD\|236759	PRK10785, PRK10785, maltodextrin glucosidase; Provisional.	0
NZ_CP011342.2\|WP_001142439.1\|405767_405959_+\|protein-YaiA	gnl\|CDD\|182421	PRK10380, PRK10380, hypothetical protein; Provisional.	5.14477e-31
NZ_CP011342.2\|WP_000158159.1\|404552_405011_+\|YaiI/YqxD-family-protein	gnl\|CDD\|178882	PRK00124, PRK00124, YaiI/YqxD family protein.	2.50663e-80
NZ_CP011342.2\|WP_001219309.1\|408932_409841_+\|fructokinase	gnl\|CDD\|236565	PRK09557, PRK09557, fructokinase; Reviewed.	0
NZ_CP011342.2\|WP_000941942.1\|406965_407250_+\|pyrimidine/purine-nucleoside-phosphorylase	gnl\|CDD\|182565	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase.	5.85948e-64
NZ_CP011342.2\|WP_000893623.1\|416677_417973_+\|phosphate-regulon-sensor-histidine-kinase-PhoR	gnl\|CDD\|182895	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR.	0
NZ_CP011342.2\|WP_001326926.1\|410085_411270_-\|MFS-transporter-AraJ	gnl\|CDD\|182234	PRK10091, PRK10091, MFS transport protein AraJ; Provisional.	0
NZ_CP011342.2\|WP_000193393.1\|405193_405718_+\|shikimate-kinase-AroL	gnl\|CDD\|235153	PRK03731, aroL, shikimate kinase AroL.	2.43812e-108
NZ_CP011342.2\|WP_000113933.1\|415930_416620_+\|phosphate-response-regulator-transcription-factor-PhoB	gnl\|CDD\|182277	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB.	5.1688e-159

>NZ_CP011342.2|WP_001219309.1|408932_409841_+|fructokinase
MRIGIDLGGTKTEVIALGDAGEQLYRHRLPTPRDDYRQTIETIATLVDMAEQATGQRGTVGMGIPGSISPYTGVVKNANSTWLNGQPFDKDLSARLQREVRLANDANCLAVSEAVDGAAAGAQTVFAVIIGTGCGAGVAFNGRAHIGGNGTAGEWGHNPLPWMDEDELRYREEVPCYCGKQGCIETFISGTGFAMDYRRLSGHALKGSEIIRLVEESDPVAELALRRYELRLAKSLAHVVNILDPDVIVLGGGMSNVDRLYQTVGQLIKQFVFGGECETPVRKAKHGDSSGVRGAAWLWPQE
>NZ_CP011342.2|WP_001298537.1|407896_408808_-|recombination-associated-protein-RdgC
MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEAQR
>NZ_CP011342.2|WP_120795376.1|407735_407819_+|protein-YkiD
MTQRPWSKLQRKTHNIAALKIIARRSE
>NZ_CP011342.2|WP_000941942.1|406965_407250_+|pyrimidine/purine-nucleoside-phosphorylase
MLQSNEYFSGKVKSIGFSSSSTGRASVGVMVEGEYTFSTAEPEEMTVISGALNVLLPDATDWQVYEAGSVFNVPGHSEFHLQVAEPTSYLCRYL
>NZ_CP011342.2|WP_001276420.1|406216_406894_+|AroM-family-protein
MSASLAILTIGIVPMQEVLPLLTEYIDEDNISHHSLLGKLSREEVMAEYAPEAGEDTILTLLNDNQLAHVSRRKVERDLQGVVEVLDNQGYDVILLMSTANISSMTARNTIFLEPSRILPPLVSSIVEDHQVGVIVPVEEMLPVQAQKWQILQKSPVFSLGNPIHDSEQKIIDAGKELLAKGADVIMLDCLGFHQRHRDLLQKQLDVPVLLSNVLIARLAAELLV
>NZ_CP011342.2|WP_001142439.1|405767_405959_+|protein-YaiA
MPTKPPYPREAYIVTIEKGKPGQTVTWYQLRADHPKPDSLISEHPTAQEAMDAKKRYEDPDKE
>NZ_CP011342.2|WP_000193393.1|405193_405718_+|shikimate-kinase-AroL
MTQPLFLIGPRGCGKTTVGMALADSLNRRFVDTDQWLQSQLNMTVAEIVEREEWAGFRARETAALEAVTAPSTVIATGGGIILTEFNRHFMQNNGIVVYLCAPVSVLVNRLQAAPEEDLRPTLTGKPLSEEVQEVLEERDALYREVAHIIIDATNEPSQVISEIRSALAQTINC
>NZ_CP011342.2|WP_000158159.1|404552_405011_+|YaiI/YqxD-family-protein
MTIWVDADACPNVIKEILYRAAERMQMPLVLVANQSLRVPPSRFIRTLRVAAGFDVADNEIVRQCEAGDLVITADIPLAAEAIEKGAAALNPRGERYTPATIRERLTMRDFMDTLRASGIQTGGPDSLSQRDRQAFAAELEKWWLEVQRSRG
>NZ_CP011342.2|WP_001295331.1|403623_404433_-|pyrroline-5-carboxylate-reductase
MEKKIGFIGCGNMGKAILGGLIASGQVLPGQIWVYTPSPDKVAALHDQFGINAAESAQEVAQIADIIFAAVKPGIMIKVLSEITSSLNKDSLVVSIAAGVTLDQLARALGHDRKIIRAMPNTPALVNAGMTSVTPNALVTPEDTADVLNIFRCFGEAEVIAEPMIHPVVGVSGSSPAYVFMFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLETGEHPGALKDMVCSPGGTTIEAVRVLEEKGFRAAVIEAMTKCMEKSEKLSKS
>NZ_CP011342.2|WP_000484048.1|402491_403607_+|diguanylate-cyclase-AdrA
MFPKIMNDENFFKKAAAHGEEPPLTPQNEHQRSGLRFARRVRLPRAVGLAGMFLPIASTLVSHPPPGWWWLVLVGWAFVWPHLAWQIASRAVDPLSREIYNLKTDAVLAGMWVGVMGVNVLPSTAMLMIMCLNLMGAGGPRLFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRLPNTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEVAA
>NZ_CP011342.2|WP_001326926.1|410085_411270_-|MFS-transporter-AraJ
MKKVILSLALGTFGLGMAEFGIMGVLTELAHNVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVMASVYFWVPDIRDEAKGNLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYVKPYMMFISGFSETAMTFIMMLVGLGMVLGNMLSGRISGRYSPLRIAAVTDFIIVLALLMLFFCGGMKTTSLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAVGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKRQQAADTPVLAKPLG
>NZ_CP011342.2|WP_000698951.1|411395_414542_-|exonuclease-subunit-SbcC
MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLSNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWSQNRARNQPDGNLQVPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVTLLTPEQVQSLTASLQVLTDEEKQLITAQQQEQQSLNWLTRQDELQQEASRRQQALQQALAEEEKAQPQLAALSLAQPARNLRPHWERIAEHSAALAHIRQQIEEVNTRLQSTMALRASIRHHAAKQSAELQQQQQSLNTWLQEHDRFRQWNNEPAGWRAQFSQQTSDREHLRQWQQQLTHAEQKLNALAAITLTLTADEVATALAQHAEQRPLRQHLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVKTICEQEARIKTLEAQRAQLQAGQPCPLCGSTSHPAVEAYQALEPGVNQSRLLALENEVKKLGEEGATLRGQLDAITKQLQRDENEAQSLRQDEQALTQQWQAVTASLNITLQPLDDIQPWLDAQDEHERQLRLLSQRHELQGQIAAHNQQIIQYQQQIEQRQQLLLTTLTGYALTLPQEDEEESWLATRQQEAQSWQQRQNELTALQNRIQQLTPILETLPQSDELPHCEETVVLENWRQVHEQCLALHSQQQTLQQQDVLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQRRQAQTLVTQTAETLAQHQQHRPDDGLALTVTVEQIQQELAQTHQKLRENTTSQGEIRQQLKQDADNRQQQQTLMQQIAQMTQQVEDWGYLNSLIGSKEGDKFRKFAQGLTLDNLVHLANQQLTRLHGRYLLQRKASEALEVEVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQIKVKKINGLGYSKLESTFAVK
>NZ_CP011342.2|WP_001221319.1|414538_415741_-|exonuclease-subunit-SbcD
MRILHTSDWHLGQNFYSKSREAEHQAFLDWLLETAQTHQVDAIIVAGDVFDTGSPPSYARTLYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDIMAFLNTTVVASAGHAPQILPRRDGTPGAVLCPIPFLRPRDIITSQAGLNGIEKQQHLLAAITDYYQQHYADACKLRGDQPLPIIATGHLTTVGASKSDAVRDIYIGTLDAFPAQNFPPADYIALGHIHRAQIIGGMEHVRYCGSPIPLSFDECGKSKYVHLVTFSNGKLESVENLNVPVTQPMAVLKGDLASITAQLEQWRDVSQEPPVWLDIEITTDEYLHDIQRKIQALTESLPVEVLLVRRSREQRERVLASQQRETLSELSVEEVFNRRLALEELDESQQQRLQHLFTTTLHTLAGEHEA
>NZ_CP011342.2|WP_000113933.1|415930_416620_+|phosphate-response-regulator-transcription-factor-PhoB
MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF
>NZ_CP011342.2|WP_000893623.1|416677_417973_+|phosphate-regulon-sensor-histidine-kinase-PhoR
MLERLSWKRLVLELLLCCLPAFILGAFFGYLPWFLLASVTGLLIWHFWNLLRLSWWLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKKRRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYLKTRDFSRPLNLVLNTGRHLEIRVMPYTHKQLLMVARDVTQMHQLEGARRNFFANVSHELRTPLTVLQGYLEMMNEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIPERLIAKNSD
>NZ_CP011342.2|WP_000149639.1|418379_419699_+|branched-chain-amino-acid-transporter-carrier-protein-BrnQ
MTHQLRSRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKVGGGVDSLSTPIGKVAGVLLATVCYLAVGPLFATPRTATVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMVVSNLGLSQLIQISVPVLTAIYPPCIALVVLSFTRSWWHNSSRVIAPPMFISLLFGILDGIKASAFSDILPSWAQRLPLAEQGLAWLMPTVVMVVLAIIWDRAAGRQVTSSAH
>NZ_CP011342.2|WP_001295329.1|419774_421148_+|proline-specific-permease-ProY
MESKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGIAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATIIIMIVAGFGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTAGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTSRRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKFKVPGGVATTIGGLIFLLFIIGLIGYHPDTRISLYVGFAWIVVLLIGWMFKRRHDRQLAENQ
>NZ_CP011342.2|WP_001310597.1|421303_423121_+|maltodextrin-glucosidase
MMLNAWHLPVPPFVKQSKDQLLITLWLTGEDPPQRIMLRTEHDNEEMSVPMHKQRSQPQPGVTAWRAAIDLSSGQPRRRYSFKLLWHDRQRWFTPQGFSRMPPARLEQFAVDVPDIGPQWAADQIFYQIFPDRFARSLPREAEQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISEKLPYLKKLGVTALYLNPVFKAPSVHKYDTEDYRHVDPQFGGDGALLRLRHNTQQLGMRLVLDGVFNHSGDSHAWFDRHNRGTGGACHNPESPWRDWYSFSDDGTALDWLGYASLPKLDYQSESLVNEIYRGEDSIVRHWLKAPWNMDGWRLDVVHMLGEAGGARNNMQHVAGITEAAKETQPEAYIVGEHFGDARQWLQADVEDAAMNYRGFTFPLWGFLANTDISYDPQQIDAQTCMAWMDNYRAGLSHQQQLRMFNQLDSHDTARFKTLLGRDIARLPLAVVWLFTWPGVPCIYYGDEVGLDGKNDPFCRKPFPWQVEKQDTALFALYQRMIALRKKSQALRHGGCQVLYAEDNVVVFVRVLNQQRVLVAINRGEACEVVLPASPFLNAVQWQCKEGHGQLTDGILALPAISATVWMN
>NZ_CP011342.2|WP_001009885.1|423125_423707_-|ACP-phosphodiesterase
MNFLAHLHLAHLAESSLSGNLLADFVRGNPEESFPPDVVAGIHMHRRIDVLTDNLPEVREAREWFRSETRRVAPITLDVMWDHFLSRHWSQLSPDFPLQEFVCYAREQVMTILPDSPPRFINLNNYLWSEQWLVRYRDMDFIQNVLNGMASRRPRLDALRDSWYDLDAHYDALETRFWQFYPRMMAQASRKAL
>NZ_CP011342.2|WP_001266503.1|423799_424870_+|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MRVTDFSFELPESLIAHYPMPERSSCRLLSLDGPTGALTHGTFTDLLDKLNPGDLLVFNNTRVIPARLFGRKASGGKIEVLVERMLDDKRILAHIRASKAPKPGAELLLGDDESINATMTARHGALFEVEFNDERSVLDILNSIGHMPLPPYIDRPDEDADRELYQTVYSEKPGAVAAPTAGLHFDEPLLEKLRAKGVEMAFVTLHVGAGTFQPVRVDTIEDHIMHSEYAEVPQDVVDAVLAAKARGNRVIAVGTTSVRSLESAAQAAKNDLIEPFFDDTQIFIYPGFQYKVVDALVTNFHLPESTLIMLVSAFAGYQHTMNAYKAAVEEKYRFFSYGDAMFITYNPQAINERVGE

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Crispr_ID: NZ_CP011342_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011342_2

550155-550251

Orphan

Consensus_repeat	Method
GCTTGACGCGTCTTATCAGGCCTACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011342_2

>merge|NZ_CP011342|2|550155-550251|CRISPRCasFinder
GCTTGACGCGTCTTATCAGGCCTACAACCGGTGCCGCATCCGGCAATTGGTGCACAATGCCTGATGCGATGCTTGACGCATCTTATCAGGCCTACAA

>NZ_CP011342|2|2|550155-550251|CRISPRCasFinder
GCTTGACGCGTCTTATCAGGCCTACAA	CCGGTGCCGCATCCGGCAATTGGTGCACAATGCCTGATGCGAT
GCTTGACGCATCTTATCAGGCCTACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011342.2\|WP_000540997.1\|542049_542835_-\|(S)-ureidoglycine-aminohydrolase	unknown	unknown	gnl\|CDD\|200251
NZ_CP011342.2\|WP_000580829.1\|545468_547136_+\|acyl-CoA-synthetase-FdrA	unknown	unknown	gnl\|CDD\|180395
NZ_CP011342.2\|WP_001333621.1\|540676_541822_+\|glycerate-3-kinase	unknown	unknown	gnl\|CDD\|182152
NZ_CP011342.2\|WP_001295318.1\|551379_551889_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|223119
NZ_CP011342.2\|WP_000988364.1\|557762_558455_+\|type-1-fimbria-chaperone-FimC	unknown	unknown	gnl\|CDD\|185117
NZ_CP011342.2\|WP_000006900.1\|537935_539297_+\|allantoinase-AllB	unknown	unknown	gnl\|CDD\|169193
NZ_CP011342.2\|WP_000255997.1\|552731_553226_-\|peptidylprolyl-isomerase-B	unknown	unknown	gnl\|CDD\|182734
NZ_CP011342.2\|WP_000190288.1\|555449_555662_-\|ribosome-associated-protein-YbcJ	unknown	unknown	gnl\|CDD\|183166
NZ_CP011342.2\|WP_000729160.1\|555663_556530_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|236760
NZ_CP011342.2\|WP_001302767.1\|539353_540655_+\|uracil/xanthine-transporter	unknown	unknown	gnl\|CDD\|183124
NZ_CP011342.2\|WP_000212247.1\|552006_552729_-\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NZ_CP011342.2\|WP_000776555.1\|557000_557543_+\|type-1-fimbrial-protein-subunit-FimA	unknown	unknown	gnl\|CDD\|237920
NZ_CP011342.2\|WP_000703900.1\|544102_545152_-\|ureidoglycolate-dehydrogenase	unknown	unknown	gnl\|CDD\|184985
NZ_CP011342.2\|WP_001310618.1\|542845_544081_-\|allantoate-deiminase	unknown	unknown	gnl\|CDD\|274471
NZ_CP011342.2\|WP_000912385.1\|553399_554785_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP011342.2\|WP_000152519.1\|548415_549231_+\|DUF2877-domain-containing-protein	unknown	unknown	gnl\|CDD\|378658
NZ_CP011342.2\|WP_000815571.1\|550315_551383_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NZ_CP011342.2\|WP_000495367.1\|547145_548405_+\|DUF1116-domain-containing-protein	unknown	unknown	gnl\|CDD\|377673
NZ_CP011342.2\|WP_000855379.1\|549227_550121_+\|carbamate-kinase	unknown	unknown	gnl\|CDD\|181831
NZ_CP011342.2\|WP_001143542.1\|554820_555342_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899

Protein	Function_ID	Function_description	E-value
NZ_CP011342.2\|WP_000540997.1\|542049_542835_-\|(S)-ureidoglycine-aminohydrolase	gnl\|CDD\|200251	TIGR03214, ura-cupin, putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).	2.39799e-151
NZ_CP011342.2\|WP_000580829.1\|545468_547136_+\|acyl-CoA-synthetase-FdrA	gnl\|CDD\|180395	PRK06091, PRK06091, membrane protein FdrA; Validated.	0
NZ_CP011342.2\|WP_001333621.1\|540676_541822_+\|glycerate-3-kinase	gnl\|CDD\|182152	PRK09932, PRK09932, glycerate 3-kinase.	0
NZ_CP011342.2\|WP_001295318.1\|551379_551889_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	1.14024e-91
NZ_CP011342.2\|WP_000988364.1\|557762_558455_+\|type-1-fimbria-chaperone-FimC	gnl\|CDD\|185117	PRK15195, PRK15195, molecular chaperone FimC.	4.4332e-149
NZ_CP011342.2\|WP_000006900.1\|537935_539297_+\|allantoinase-AllB	gnl\|CDD\|169193	PRK08044, PRK08044, allantoinase AllB.	0
NZ_CP011342.2\|WP_000255997.1\|552731_553226_-\|peptidylprolyl-isomerase-B	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	9.12357e-121
NZ_CP011342.2\|WP_000190288.1\|555449_555662_-\|ribosome-associated-protein-YbcJ	gnl\|CDD\|183166	PRK11507, PRK11507, ribosome-associated protein YbcJ.	1.38756e-42
NZ_CP011342.2\|WP_000729160.1\|555663_556530_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|236760	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
NZ_CP011342.2\|WP_001302767.1\|539353_540655_+\|uracil/xanthine-transporter	gnl\|CDD\|183124	PRK11412, PRK11412, uracil/xanthine transporter.	0
NZ_CP011342.2\|WP_000212247.1\|552006_552729_-\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	2.41122e-165
NZ_CP011342.2\|WP_000776555.1\|557000_557543_+\|type-1-fimbrial-protein-subunit-FimA	gnl\|CDD\|237920	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA.	9.67411e-92
NZ_CP011342.2\|WP_000703900.1\|544102_545152_-\|ureidoglycolate-dehydrogenase	gnl\|CDD\|184985	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional.	0
NZ_CP011342.2\|WP_001310618.1\|542845_544081_-\|allantoate-deiminase	gnl\|CDD\|274471	TIGR03176, AllC, allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea. [Central intermediary metabolism, Nitrogen metabolism].	0
NZ_CP011342.2\|WP_000912385.1\|553399_554785_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP011342.2\|WP_000152519.1\|548415_549231_+\|DUF2877-domain-containing-protein	gnl\|CDD\|378658	pfam11392, DUF2877, Protein of unknown function (DUF2877). This bacterial family of proteins are putative carboxylase proteins however this cannot be confirmed.	3.47659e-37
NZ_CP011342.2\|WP_000815571.1\|550315_551383_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	2.50904e-178
NZ_CP011342.2\|WP_000495367.1\|547145_548405_+\|DUF1116-domain-containing-protein	gnl\|CDD\|377673	pfam06545, DUF1116, Protein of unknown function (DUF1116). This family contains hypothetical bacterial proteins of unknown function.	1.27269e-131
NZ_CP011342.2\|WP_000855379.1\|549227_550121_+\|carbamate-kinase	gnl\|CDD\|181831	PRK09411, PRK09411, carbamate kinase; Reviewed.	0
NZ_CP011342.2\|WP_001143542.1\|554820_555342_-\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	4.92496e-31

>NZ_CP011342.2|WP_000855379.1|549227_550121_+|carbamate-kinase
MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVTDDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIRHATPDELAPFAKADGSMGPNVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCISL
>NZ_CP011342.2|WP_000152519.1|548415_549231_+|DUF2877-domain-containing-protein
MTIIHPLLASSSAPNYRQSWRLAGVWRRAINLMTESGELLTLHRQGSGFGPGGWVLRRAQFDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPPAHPQPLAAAWMQRAEETGLFGPLALAASDPLPAELRQFRHCFQAALNGVKTDWRHWLGKGPGLTPSHDDTLSGMLLAAWYYGALDARSGRPFFACSDNLQLVTTAVSVSYLRYAAQGYFASPLLHFVHALSCPKRTAVAIDSLLALGHTSGADTLLGFWLGQQLLQGKP
>NZ_CP011342.2|WP_000495367.1|547145_548405_+|DUF1116-domain-containing-protein
MFTSVAQANAAVIEQIRRARPHWLDVQPASSLISELNEGKTLLHAGPPMRWQEMTGPMKGACVGACLFEGWAKDEAQALAILEQGEVNFIPCHHVNAVGPMGGITSASMPMLVVENVTDGNRAYCNLNEGIGKVMRFGAYGEDVLTRHRWMRDVLMPVLSAALGRMERGIDLTAMMAQGITMGDEFHQRNIASSALLMRALAPQIARLDHDKQHIAEVMDFLSVTDQFFLNLAMAYCKAAMDAGAMIRAGSIVTAMTRNGNMFGIRVSGLGERWFTAPVNTPQGLFFTGFSQEQANPDMGDSAITETFGIGGAAMIAAPGVTRFVGAGGMEAARAVSEEMAEIYLERNMQLQIPSWDFQGACLGLDIRRVVETGITPLINTGIAHKEAGIGQIGAGTVRAPLACFEQALEALAESMGIG
>NZ_CP011342.2|WP_000580829.1|545468_547136_+|acyl-CoA-synthetase-FdrA
MIHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKALLDTTGFWHDDFNNATPNDICVAIRSEAADAGIAQAIMQQLEEALKQLAQGSGSSQALTQVRRWDSACQKLPDANLALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDCGTSMIAGTPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNAMKATGKPTVALFLGYTPAVARDENVWFASSLDEAARLACLLSRVTARRNAIAPVSSGFICGLYTGGTLAAEAAGLLAGHLGVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRPHPMIDPTLRNQLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAARLDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVVSSLPEATLLAAALIHPLSPAAQQHTPSLLENVAVINIGLRSFALELQSASKPVVHYQWSPVAGGNKKLARLLERLQ
>NZ_CP011342.2|WP_000703900.1|544102_545152_-|ureidoglycolate-dehydrogenase
MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAARAGFIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGVPTTDPFAVHALLPAAGPKGYGLMMMIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSYETKNPFAQ
>NZ_CP011342.2|WP_001310618.1|542845_544081_-|allantoate-deiminase
MITHFRQAIEETLPWLSSFGADPAGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEVGNLYGRLNGTEYPQEVVLSGSHIDTVVNGGNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLANPDDVRNICDAKGNSFVDAMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKRMGDPLVLTFGKVEPRPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDLWMDEEPVPMNKELVATLTELCEREKLNYRVMHSGAGHDAQIFAPRVPTCMIFIPSINGISHNPAERTNITDLAEGVKTLALMLYQLAWQK
>NZ_CP011342.2|WP_000540997.1|542049_542835_-|(S)-ureidoglycine-aminohydrolase
MGYLNNVTGYREDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGYAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCNRDVEI
>NZ_CP011342.2|WP_001333621.1|540676_541822_+|glycerate-3-kinase
MKIVIAPDSFKESLSAEKCCQAIKAGFSTLFPDANYICLPIADGGEGTVDAMVAATGGNIVTLEVCGPMGEKVNAFYGLTGDGKTAVIEMAAASGLMLVAPEKRNPLLASSFGTGELIRHALDNDIRHIILGIGGSATVDGGMGMAQALGVRFLDADGQALAANGGNLARVASIEMDECDPRLANCHIEVACDVDNPLVGARGAAAVFGPQKGATPEMVEELEQGLQNYARVLQQQTEINVCQMAGGGAAGGMGIAAAVFLNADIKPGIEIVLNAVNLAQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGVLGDGVEVVHQYGIDAVFSILPRLAPLAEVLASGETNLFNSARNIACAIKIGQGIKN
>NZ_CP011342.2|WP_001302767.1|539353_540655_+|uracil/xanthine-transporter
MFNFAVSRESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSLAVGIALSGVLTMLIGFSGLGHRLARLFTPSVMVLFMLMLGAQLTTIFFKGMLGLPFGIADPNFKIQLPPFALSVAVMCLVLAMIIFLPQRFARYGLLVGTITGWLLWYFCFPSSHSLSGELHWQWFPLGSGGALSPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYTRRSFIYGSVICLLVALVPALTRLFCSIPLPVSSAVMLVSYLPLLFSALVFSQQITFTARNIYRLALPLFVGIFLMALPPVYLQDLPLTLRPLLSNGLLVGILLAVLMDNLIPWERIE
>NZ_CP011342.2|WP_000006900.1|537935_539297_+|allantoinase-AllB
MSFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGDAKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSYNIDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLHVCHVSSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMKAWGGIAGLQSCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLTNDDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFILKHQQ
>NZ_CP011342.2|WP_000815571.1|550315_551383_-|5-(carboxyamino)imidazole-ribonucleotide-synthase
MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWPETALTRELARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAECYGECIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQAQAEEMLSAIMQELGYVGVMAMECFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVVNNPSVMINLIGSDVNYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEALIPLLPPEYASGVIWAQSKFG
>NZ_CP011342.2|WP_001295318.1|551379_551889_-|5-(carboxyamino)imidazole-ribonucleotide-mutase
MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRKAQTDEVLENPDPRGAA
>NZ_CP011342.2|WP_000212247.1|552006_552729_-|UDP-2,3-diacylglucosamine-diphosphatase
MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFEAWIGDDDPNPLHRKMAAAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKVLELYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQTLFLALPLFVRKRIAARMRANSKEANSSKSLAIMDVNQNAVVSAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGAWHTEGSMVKVTADDVELIHFPF
>NZ_CP011342.2|WP_000255997.1|552731_553226_-|peptidylprolyl-isomerase-B
MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE
>NZ_CP011342.2|WP_000912385.1|553399_554785_+|cysteine--tRNA-ligase
MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWRRK
>NZ_CP011342.2|WP_001143542.1|554820_555342_-|metal-dependent-hydrolase
MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLSFKFGVAYGNVFGHRGFTHSLVFAFVVPLLCVFIGRRWFRAGLIRCWLFLTVSLLSHSLLDSVTTGGKGVGWLWPWSDERFFAPWQVIKVAPFALSRYTTPYGHQVIISELMWVWLPGMLLMGMLWWRRR
>NZ_CP011342.2|WP_000190288.1|555449_555662_-|ribosome-associated-protein-YbcJ
MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA
>NZ_CP011342.2|WP_000729160.1|555663_556530_-|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDPQDE
>NZ_CP011342.2|WP_000776555.1|557000_557543_+|type-1-fimbrial-protein-subunit-FimA
MKLRFISSALAAALFAATGSYAAVVDGGTIHFEGELVNAACSVNTDSADQVVTLGQYRTDIFNAVGNTSALIPFTIQLNDCDPVVAANAAVAFSGQADAINDNLLAIASSTNTTTATGVGIEILDNTSAILKPDGNSFSTNQNLIPGTNVLHFSARYKGTGTSASAGQANADATFIMRYE
>NZ_CP011342.2|WP_000988364.1|557762_558455_+|type-1-fimbria-chaperone-FimC
MMTKIKLLMLIIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNSWIENSSGVKEKSFIITPPLFVSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKNALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSRSGNYINVHNPSPFYVTLVNLQVGSQKLGNAMAAPRVNSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN

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Crispr_ID: NZ_CP011342_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011342_3

2853570-2854332

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	PILER-CR

12 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP011342_3

>merge|NZ_CP011342|3|2853570-2854332|CRISPRCasFinder,CRT,PILER-CR
CGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTGAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTGGCTACCGGGCGGTTTATCCCCGCTAACGCGGGGAACTCGTAGTCCATCATTCCACCTATGTCTGAACTCCCGGTTTATCCCCGCTGGCGCGGGGAACTCCCGGGGGATAATGTTTACGGTCATGCGCCCCCCGGTTTATCCCCGCTGGCGCGGGGAACTCTGGGCGGCTTGCCTTGCAGCCAGCTCCAGCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCAAGCTGGCTGGCAATCTCTTTCGGGGTGAGTCCGGTTTATCCCCGCTGGCGCGGGGAACTCTAGTTTCCGTATCTCCGGATTTATAAAGCTGACGGTTTATCCCCGCTGGCGCGGGGAACTCGCAGGCGGCGACGCGCAGGGTATGCGCGATTCGCGGTTTATCCCCGCTGGCGCGGGGAACTCGCGACCGCTCAGAAATTCCAGACCCGATCCAAACGGTTTATCCCCGCTGGCGCGGGGAACTCTCAACATTATCAATTACAACCGACAGGGAGCCCGGTTTATCCCCGCTGGCGCGGGGAACTCAGCGTGTTCGGCATCACCTTTGGCTTCGGCTGCGGTTTATCCCCGCTGGCGCGGGGAACTCTGCGTGAGCGTATCGCCGCGCGTCTGCGAAAGCGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_CP011342|3|3|2853570-2854332|CRISPRCasFinder
CGGTTTATCCCCGCTGATGCGGGGAACAC	CAGCGTCAGGCGTGAAATCTCACCGTCGTTGC
CGGTTTATCCCTGCTGGCGCGGGGAACTC	TCGGTTCAGGCGTTGCAAACCTGGCTACCGGG
CGGTTTATCCCCGCTAACGCGGGGAACTC	GTAGTCCATCATTCCACCTATGTCTGAACTCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CCGGGGGATAATGTTTACGGTCATGCGCCCCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TGGGCGGCTTGCCTTGCAGCCAGCTCCAGCAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AAGCTGGCTGGCAATCTCTTTCGGGGTGAGTC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TAGTTTCCGTATCTCCGGATTTATAAAGCTGA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCAGGCGGCGACGCGCAGGGTATGCGCGATTCG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCGACCGCTCAGAAATTCCAGACCCGATCCAAA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TCAACATTATCAATTACAACCGACAGGGAGCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGCGTGTTCGGCATCACCTTTGGCTTCGGCTG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TGCGTGAGCGTATCGCCGCGCGTCTGCGAAAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_CP011342|3|1|2853570-2854332|CRT
CGGTTTATCCCCGCTGATGCGGGGAACAC	CAGCGTCAGGCGTGAAATCTCACCGTCGTTGC
CGGTTTATCCCTGCTGGCGCGGGGAACTC	TCGGTTCAGGCGTTGCAAACCTGGCTACCGGG
CGGTTTATCCCCGCTAACGCGGGGAACTC	GTAGTCCATCATTCCACCTATGTCTGAACTCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CCGGGGGATAATGTTTACGGTCATGCGCCCCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TGGGCGGCTTGCCTTGCAGCCAGCTCCAGCAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AAGCTGGCTGGCAATCTCTTTCGGGGTGAGTC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TAGTTTCCGTATCTCCGGATTTATAAAGCTGA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCAGGCGGCGACGCGCAGGGTATGCGCGATTCG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCGACCGCTCAGAAATTCCAGACCCGATCCAAA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TCAACATTATCAATTACAACCGACAGGGAGCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGCGTGTTCGGCATCACCTTTGGCTTCGGCTG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TGCGTGAGCGTATCGCCGCGCGTCTGCGAAAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_CP011342|3|1|2853753-2854332|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CCGGGGGATAATGTTTACGGTCATGCGCCCCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TGGGCGGCTTGCCTTGCAGCCAGCTCCAGCAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AAGCTGGCTGGCAATCTCTTTCGGGGTGAGTC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TAGTTTCCGTATCTCCGGATTTATAAAGCTGA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCAGGCGGCGACGCGCAGGGTATGCGCGATTCG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCGACCGCTCAGAAATTCCAGACCCGATCCAAA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TCAACATTATCAATTACAACCGACAGGGAGCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGCGTGTTCGGCATCACCTTTGGCTTCGGCTG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TGCGTGAGCGTATCGCCGCGCGTCTGCGAAAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011342.2\|WP_000246138.1\|2847648_2848359_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP011342.2\|WP_001219242.1\|2847169_2847649_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP011342.2\|WP_001246104.1\|2848882_2849206_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP011342.2\|WP_001381369.1\|2854437_2854722_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP011342.2\|WP_000568943.1\|2846123_2847173_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP011342.2\|WP_001295182.1\|2845381_2846143_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP011342.2\|WP_001334996.1\|2856242_2856917_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
NZ_CP011342.2\|WP_000281400.1\|2855656_2856256_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP011342.2\|WP_001050401.1\|2858498_2860007_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|236613
NZ_CP011342.2\|WP_001173673.1\|2849255_2849861_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP011342.2\|WP_000372108.1\|2851289_2852198_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP011342.2\|WP_000039850.1\|2863446_2864181_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP011342.2\|WP_001090361.1\|2849860_2851288_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP011342.2\|WP_000433152.1\|2860421_2863088_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP011342.2\|WP_001290679.1\|2864255_2865968_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP011342.2\|WP_000490428.1\|2852449_2853487_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP011342.2\|WP_000752800.1\|2858023_2858506_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|187801
NZ_CP011342.2\|WP_000220066.1\|2854723_2855641_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP011342.2\|WP_000517476.1\|2848377_2848689_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP011342.2\|WP_000064450.1\|2856919_2858011_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843

Protein	Function_ID	Function_description	E-value
NZ_CP011342.2\|WP_000246138.1\|2847648_2848359_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
NZ_CP011342.2\|WP_001219242.1\|2847169_2847649_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_CP011342.2\|WP_001246104.1\|2848882_2849206_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP011342.2\|WP_001381369.1\|2854437_2854722_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	4.76227e-62
NZ_CP011342.2\|WP_000568943.1\|2846123_2847173_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP011342.2\|WP_001295182.1\|2845381_2846143_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP011342.2\|WP_001334996.1\|2856242_2856917_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	2.15381e-103
NZ_CP011342.2\|WP_000281400.1\|2855656_2856256_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.81669e-101
NZ_CP011342.2\|WP_001050401.1\|2858498_2860007_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|236613	PRK09693, PRK09693, Cascade antiviral complex protein; Validated.	0
NZ_CP011342.2\|WP_001173673.1\|2849255_2849861_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_CP011342.2\|WP_000372108.1\|2851289_2852198_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP011342.2\|WP_000039850.1\|2863446_2864181_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.39575e-137
NZ_CP011342.2\|WP_001090361.1\|2849860_2851288_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP011342.2\|WP_000433152.1\|2860421_2863088_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	0
NZ_CP011342.2\|WP_001290679.1\|2864255_2865968_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP011342.2\|WP_000490428.1\|2852449_2853487_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP011342.2\|WP_000752800.1\|2858023_2858506_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187801	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.76293e-33
NZ_CP011342.2\|WP_000220066.1\|2854723_2855641_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	2.68794e-159
NZ_CP011342.2\|WP_000517476.1\|2848377_2848689_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP011342.2\|WP_000064450.1\|2856919_2858011_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	5.43824e-154

>NZ_CP011342.2|WP_000490428.1|2852449_2853487_+|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTPAFPAGNSWHDVRLDNHQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_CP011342.2|WP_000372108.1|2851289_2852198_-|sulfate-adenylyltransferase-subunit-CysD
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP011342.2|WP_001090361.1|2849860_2851288_-|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_CP011342.2|WP_001173673.1|2849255_2849861_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP011342.2|WP_001246104.1|2848882_2849206_-|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP011342.2|WP_000517476.1|2848377_2848689_-|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP011342.2|WP_000246138.1|2847648_2848359_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP011342.2|WP_001219242.1|2847169_2847649_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP011342.2|WP_000568943.1|2846123_2847173_-|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP011342.2|WP_001295182.1|2845381_2846143_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW
>NZ_CP011342.2|WP_001381369.1|2854437_2854722_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLAIWLLEVRAGVYVGDVSAKIREMIWEQIAGLAEEGNVVMAWATNTETGFEFQTFGLNRRTPVDLDGLRLVSFLPV
>NZ_CP011342.2|WP_000220066.1|2854723_2855641_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDAGHRSS
>NZ_CP011342.2|WP_000281400.1|2855656_2856256_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSKVIIARAWSRDLYQLHQGLWHLFPNRPDAARDFLFHVEKRNTPEGCHVLLQSAQMPVSTAVATVIKTKQVEFQLQVGVPLYFRLRANPIKTILDNQKRLDSKGNIKRCRVPLIKEAEQIAWLQRKLGNAARVEDVHPISERPQYFSGDGKSGKIQTVCFEGVLTINDAPALIDLVQQGIGPAKSMGCGLLSLAPL
>NZ_CP011342.2|WP_001334996.1|2856242_2856917_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MRSYLILRLAGPMQAWGQPTFEGTRPTGRFPTRSGLLGLLGACLGIQRDDTSSLQALSESVQFAVRCDELILDDRRVSVTGLRDYHTVLGAREDYRGLKSHETIQTWREYLCDASFTVALWLTPHATMVISELEKAVLKPRYTPYLGRRSCPLTHPLFLGTCQASDPQKALLNYEPVGGDIYSEESVTGHHLKFTARDEPMITLPRQFASREWYVIKGGMDVSQ
>NZ_CP011342.2|WP_000064450.1|2856919_2858011_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSNFINIHVLISHSPSCLNRDDMNMQKDAIFGGKRRVRISSQSLKRAMRKSGYYAQNIGESSLRTIHLAQLRDVLRQKLGERFDQKIIDKTLALLSGKSVDEAEKISADAVTPWVVGEIAWFCEQVAKAEADNLDDKKLLKVLKEDIAAIRVNLQQGVDIALSGRMATSGMMTELGKVDGAMSIAHAITTHQVDSDIDWFTAVDDLQEQGSAHLGTQEFSSGVFYRYANINLAQLQENLGGASREQALEIATHVVHMLATEVPGAKQRTYAAFNPADMVMVNFSDMPLSMANAFEKAVKAKDGFLQPSIQAFNQYWDRVANGYGLNGAAAQFSLSDVDPITAQVKQMPTLEQLKSWVRNNGEA
>NZ_CP011342.2|WP_000752800.1|2858023_2858506_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MADEIDAMALYRAWQQLDNGSCAQIRRVSEPDELRDIPAFYRLVQPFGWENPRHQQALLRMVFCLSAGKNVIRHQDKKSEQTTGISLGRALANSGRINERRIFQLIRADRTADMVQLRRLLTHAEPVLDWPLMARMLTWWGKRERQQLLEDFVLTTNKNA
>NZ_CP011342.2|WP_001050401.1|2858498_2860007_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNLLIDNWIPVRPRNGGKVQIINLQSLYCSRDQWRLSLPRDDMELAALALLVCIGQIIAPAKDDVEFRHRIMNPLTEDEFQQLIAPWIDMFYLNHAEHPFMQTKGVKANDVTPMEKLLAGVSGATNCAFVNQPGQGEALCGGCTAIALFNQANQAPGFGGGFKSGLRGGTPVTTFVRGIDLRSTVLLNVLTLPRLQKQFPNESHTENQPTWIKPIKSNESIPASSIGFVRGLFWQPAHIELCDPIGIGKCSCCGQESNLRYTGFLKEKFTFTVNGLWPHPHSPCLVTVKKGEVEEKFLAFTTSAPSWTQISRVVVDKIIQNENGNRVAAVVNQFRNIAPQSPLELIMGGYRNNQASILERRHDVLMFNQGWQQYGNVINEIVTVGLGYKTALRKALYTFAEGFKNKDFKGAGVSVHETAERHFYRQSELLIPDVLANVNFSQADEVIADLRDKLHQLCEMLFNQSVAPYAHHPKLISTLALARATLYKHLRELKPQGGPSNG
>NZ_CP011342.2|WP_000433152.1|2860421_2863088_-|CRISPR-associated-helicase/endonuclease-Cas3
MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPANPK
>NZ_CP011342.2|WP_000039850.1|2863446_2864181_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP011342.2|WP_001290679.1|2864255_2865968_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLTDAERMKHESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD

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Crispr_ID: NZ_CP011342_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011342_4

2879883-2880276

Unclear

I-E

Consensus_repeat	Method
GGTTTATCCCCGCTGGCGCGGGGAAC	PILER-CR
GGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
GGTTTATCCCCGCTGGCGCGGGGAACAC	CRT

6 spacers

The CRISPR arrays of NZ_CP011342_4

>merge|NZ_CP011342|4|2879883-2880276|PILER-CR,CRISPRCasFinder,CRT
GGTTTATCCCCGCTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTCGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAACAGCAGCACCCATGACCACGTCGGTTTATCCCCGCTGGCGCGGGGAACACGAAATGCTGGTGAGCGTTAATGCCGCAAACACAGGTTTATCCCCGCTGGCGCGGGGAACACATTACGCCTTTTTGCGATTGCCCGGTTTTTGCCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP011342|4|2|2879883-2880274|PILER-CR
GGTTTATCCCCGCTGGCGCGGGGAAC	TCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCC
GGTTTATCCCCGCTGGCGCGGGGAAC	ACCTGTTTTCGCAAATCTATGGACTATTGCTATTC
GGTTTATCCCCGCTGGCGCGGGGAAC	ACGGGCGCACGGAATACAAAGCCGTGTATCTGCTC
GGTTTATCCCCGCTGGCGCGGGGAAC	ACTGGCTCTGCAACAGCAGCACCCATGACCACGTC
GGTTTATCCCCGCTGGCGCGGGGAAC	ACGAAATGCTGGTGAGCGTTAATGCCGCAAACACA
GGTTTATCCCCGCTGGCGCGGGGAAC	ACATTACGCCTTTTTGCGATTGCCCGGTTTTTGCC
GGTTTATCCCCGCTGGCGCGGGGAAC

>NZ_CP011342|4|4|2879883-2880276|CRISPRCasFinder
GGTTTATCCCCGCTGGCGCGGGGAACTC	GACAGAACGGCCTCAGTAGTCTCGTCAGGCTCC
GGTTTATCCCCGCTGGCGCGGGGAACAC	CTGTTTTCGCAAATCTATGGACTATTGCTATTC
GGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCGCACGGAATACAAAGCCGTGTATCTGCTC
GGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCTCTGCAACAGCAGCACCCATGACCACGTC
GGTTTATCCCCGCTGGCGCGGGGAACAC	GAAATGCTGGTGAGCGTTAATGCCGCAAACACA
GGTTTATCCCCGCTGGCGCGGGGAACAC	ATTACGCCTTTTTGCGATTGCCCGGTTTTTGCC
GGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP011342|4|2|2879883-2880276|CRT
GGTTTATCCCCGCTGGCGCGGGGAACTC	GACAGAACGGCCTCAGTAGTCTCGTCAGGCTCC
GGTTTATCCCCGCTGGCGCGGGGAACAC	CTGTTTTCGCAAATCTATGGACTATTGCTATTC
GGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCGCACGGAATACAAAGCCGTGTATCTGCTC
GGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCTCTGCAACAGCAGCACCCATGACCACGTC
GGTTTATCCCCGCTGGCGCGGGGAACAC	GAAATGCTGGTGAGCGTTAATGCCGCAAACACA
GGTTTATCCCCGCTGGCGCGGGGAACAC	ATTACGCCTTTTTGCGATTGCCCGGTTTTTGCC
GGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011342.2\|WP_000254738.1\|2886624_2886960_-\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP011342.2\|WP_000039688.1\|2877764_2879243_+\|kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP011342.2\|WP_000059307.1\|2873832_2875287_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP011342.2\|WP_001288228.1\|2881425_2881566_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011342.2\|WP_001164544.1\|2876460_2877738_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP011342.2\|WP_000036723.1\|2882511_2883810_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP011342.2\|WP_000021334.1\|2875356_2876142_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_CP011342.2\|WP_001268460.1\|2881579_2882452_+\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP011342.2\|WP_000226815.1\|2887285_2889520_-\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP011342.2\|WP_001301334.1\|2868525_2869797_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_CP011342.2\|WP_001199973.1\|2880615_2881287_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP011342.2\|WP_001130266.1\|2870064_2870640_+\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP011342.2\|WP_000210878.1\|2883897_2885535_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP011342.2\|WP_000907716.1\|2870787_2871681_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP011342.2\|WP_001071648.1\|2885762_2886554_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP011342.2\|WP_001299652.1\|2871644_2872424_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP011342.2\|WP_000147666.1\|2872401_2873811_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP011342.2\|WP_000046812.1\|2889567_2890869_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP011342.2\|WP_000109529.1\|2869787_2870048_+\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP011342.2\|WP_000581937.1\|2886959_2887208_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082

Protein	Function_ID	Function_description	E-value
NZ_CP011342.2\|WP_000254738.1\|2886624_2886960_-\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74
NZ_CP011342.2\|WP_000039688.1\|2877764_2879243_+\|kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	1.27376e-109
NZ_CP011342.2\|WP_000059307.1\|2873832_2875287_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	2.73778e-83
NZ_CP011342.2\|WP_001164544.1\|2876460_2877738_+\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	1.60446e-29
NZ_CP011342.2\|WP_000036723.1\|2882511_2883810_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP011342.2\|WP_000021334.1\|2875356_2876142_-\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	7.96451e-139
NZ_CP011342.2\|WP_001268460.1\|2881579_2882452_+\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	3.25867e-100
NZ_CP011342.2\|WP_000226815.1\|2887285_2889520_-\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP011342.2\|WP_001301334.1\|2868525_2869797_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	5.03655e-125
NZ_CP011342.2\|WP_001199973.1\|2880615_2881287_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
NZ_CP011342.2\|WP_001130266.1\|2870064_2870640_+\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
NZ_CP011342.2\|WP_000210878.1\|2883897_2885535_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP011342.2\|WP_000907716.1\|2870787_2871681_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	6.66577e-90
NZ_CP011342.2\|WP_001071648.1\|2885762_2886554_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
NZ_CP011342.2\|WP_001299652.1\|2871644_2872424_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	1.56693e-62
NZ_CP011342.2\|WP_000147666.1\|2872401_2873811_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.50431e-51
NZ_CP011342.2\|WP_000046812.1\|2889567_2890869_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP011342.2\|WP_000109529.1\|2869787_2870048_+\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	7.43419e-42
NZ_CP011342.2\|WP_000581937.1\|2886959_2887208_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48

>NZ_CP011342.2|WP_000039688.1|2877764_2879243_+|kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDNMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNVDSIQSWSNA
>NZ_CP011342.2|WP_001164544.1|2876460_2877738_+|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQIAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSTSLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLTLTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALGMVIVFTFLLFQKIRTADSAPAMASSK
>NZ_CP011342.2|WP_000021334.1|2875356_2876142_-|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVGITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>NZ_CP011342.2|WP_000059307.1|2873832_2875287_-|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKVTGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP011342.2|WP_000147666.1|2872401_2873811_-|MFS-transporter
MTGRCLFGFSGEKPFLLPDNEGVKMNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP011342.2|WP_001299652.1|2871644_2872424_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>NZ_CP011342.2|WP_000907716.1|2870787_2871681_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MAGLFTPKDAAMNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>NZ_CP011342.2|WP_001130266.1|2870064_2870640_+|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP011342.2|WP_000109529.1|2869787_2870048_+|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQTAERLINACPAGLFSLTPEGNLRIDYRSCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NZ_CP011342.2|WP_001301334.1|2868525_2869797_+|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGVTTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGRICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRTWPALMQDISRDLWDQGDKPVPPLRQLFWHHLRRHGLWHLAGDVIRSLRCL
>NZ_CP011342.2|WP_001199973.1|2880615_2881287_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP011342.2|WP_001288228.1|2881425_2881566_+|hypothetical-protein
MSEENKENGFNHVKTFTKIIFIFSVLVFNDNEYKITDAAVNLFIQI
>NZ_CP011342.2|WP_001268460.1|2881579_2882452_+|YgcG-family-protein
MRYFILMFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTHKLESIFNNTQVQIAVLIVPTTKDETIEQYATRVFDNWRLGDAKRNDGILIVVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAKGLELAINALNNQLTSQHQYPTNPSESESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSGVCISAIYLLDLFLFSDKIFSIAVFSFFFTFTIFMVFTCLCVLQKRASGRSYHSDNSGSAGGSDSGGFSGGGGSSGGGGASGRW
>NZ_CP011342.2|WP_000036723.1|2882511_2883810_-|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP011342.2|WP_000210878.1|2883897_2885535_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP011342.2|WP_001071648.1|2885762_2886554_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP011342.2|WP_000254738.1|2886624_2886960_-|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP011342.2|WP_000581937.1|2886959_2887208_-|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP011342.2|WP_000226815.1|2887285_2889520_-|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_CP011342.2|WP_000046812.1|2889567_2890869_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP011342_4	4.11\|2880155\|33\|NZ_CP011342\|CRISPRCasFinder,CRT	2880155-2880187	33	NZ_LR134258	Klebsiella aerogenes strain NCTC9644 plasmid 5, complete sequence	3574-3606	4	0.879
NZ_CP011342_4	4.11\|2880155\|33\|NZ_CP011342\|CRISPRCasFinder,CRT	2880155-2880187	33	LR134281	Klebsiella aerogenes strain NCTC9793 genome assembly, plasmid: 6	3567-3599	4	0.879
NZ_CP011342_4	4.11\|2880155\|33\|NZ_CP011342\|CRISPRCasFinder,CRT	2880155-2880187	33	KY271401	Klebsiella phage 1 LV-2017, complete genome	21043-21075	4	0.879
NZ_CP011342_3	3.5\|2853843\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2853843-2853874	32	NC_021229	Arthrobacter nicotinovorans pAO1 megaplasmid sequence, strain ATCC 49919	65474-65505	5	0.844
NZ_CP011342_4	4.5\|2880153\|35\|NZ_CP011342\|PILER-CR	2880153-2880187	35	NZ_LR134258	Klebsiella aerogenes strain NCTC9644 plasmid 5, complete sequence	3572-3606	5	0.857
NZ_CP011342_4	4.5\|2880153\|35\|NZ_CP011342\|PILER-CR	2880153-2880187	35	LR134281	Klebsiella aerogenes strain NCTC9793 genome assembly, plasmid: 6	3565-3599	5	0.857
NZ_CP011342_4	4.5\|2880153\|35\|NZ_CP011342\|PILER-CR	2880153-2880187	35	KY271401	Klebsiella phage 1 LV-2017, complete genome	21041-21075	5	0.857
NZ_CP011342_3	3.5\|2853843\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2853843-2853874	32	NZ_CP017422	Arthrobacter sp. ZXY-2 plasmid pZXY21, complete sequence	208287-208318	6	0.812
NZ_CP011342_3	3.11\|2854211\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854211-2854242	32	KY883647	Vibrio phage JSF33, complete genome	9760-9791	6	0.812
NZ_CP011342_3	3.12\|2854272\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854272-2854303	32	NZ_CP009293	Novosphingobium pentaromativorans US6-1 plasmid pLA4, complete sequence	152196-152227	6	0.812
NZ_CP011342_4	4.11\|2880155\|33\|NZ_CP011342\|CRISPRCasFinder,CRT	2880155-2880187	33	KY653119	Morganella phage IME1369_02, complete genome	18216-18248	6	0.818
NZ_CP011342_4	4.5\|2880153\|35\|NZ_CP011342\|PILER-CR	2880153-2880187	35	KY653119	Morganella phage IME1369_02, complete genome	18216-18250	7	0.8
NZ_CP011342_3	3.1\|2853599\|32\|NZ_CP011342\|CRISPRCasFinder,CRT	2853599-2853630	32	NZ_AP018516	Acetobacter orientalis strain FAN1 plasmid pAOF1, complete sequence	48296-48327	8	0.75
NZ_CP011342_3	3.5\|2853843\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2853843-2853874	32	MK113951	Phage 5P_3, complete genome	11967-11998	8	0.75
NZ_CP011342_3	3.5\|2853843\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2853843-2853874	32	AP017924	Ralstonia phage RP12 DNA, complete genome	11643-11674	8	0.75
NZ_CP011342_3	3.8\|2854026\|33\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854026-2854058	33	NC_013856	Azospirillum sp. B510 plasmid pAB510b, complete sequence	375744-375776	8	0.758
NZ_CP011342_3	3.11\|2854211\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854211-2854242	32	MN855762	Bacteriophage sp. isolate 505, complete genome	4840-4871	8	0.75
NZ_CP011342_3	3.11\|2854211\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854211-2854242	32	NC_020548	Azoarcus sp. KH32C plasmid pAZKH, complete sequence	224460-224491	8	0.75
NZ_CP011342_3	3.12\|2854272\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854272-2854303	32	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	750410-750441	8	0.75
NZ_CP011342_4	4.10\|2880094\|33\|NZ_CP011342\|CRISPRCasFinder,CRT	2880094-2880126	33	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	755172-755204	8	0.758
NZ_CP011342_3	3.8\|2854026\|33\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854026-2854058	33	NZ_CP010957	Sphingobium sp. YBL2 plasmid 3pYBL2-3, complete sequence	26182-26214	9	0.727
NZ_CP011342_3	3.11\|2854211\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854211-2854242	32	NZ_CP015585	Roseomonas gilardii strain U14-5 plasmid 1, complete sequence	104261-104292	9	0.719
NZ_CP011342_3	3.11\|2854211\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854211-2854242	32	NZ_CP054618	Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence	142898-142929	9	0.719
NZ_CP011342_3	3.12\|2854272\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854272-2854303	32	MN234174	Mycobacterium phage Efra2, complete genome	35614-35645	9	0.719
NZ_CP011342_3	3.12\|2854272\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854272-2854303	32	MN234165	Mycobacterium phage Yunkel11, complete genome	35570-35601	9	0.719
NZ_CP011342_3	3.12\|2854272\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854272-2854303	32	MN234201	Mycobacterium phage Guanica15, complete genome	35571-35602	9	0.719
NZ_CP011342_1	1.1\|409908\|59\|NZ_CP011342\|CRISPRCasFinder	409908-409966	59	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	97-155	10	0.831
NZ_CP011342_3	3.5\|2853843\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2853843-2853874	32	NC_002580	Propionibacterium freudenreichii plasmid p545, complete sequence	2898-2929	10	0.688
NZ_CP011342_3	3.6\|2853904\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2853904-2853935	32	NZ_CP028970	Aminobacter sp. MSH1 plasmid pUSP2, complete sequence	156123-156154	10	0.688
NZ_CP011342_3	3.6\|2853904\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2853904-2853935	32	NZ_CP053984	Achromobacter pestifer strain FDAARGOS_790 plasmid unnamed, complete sequence	21888-21919	10	0.688
NZ_CP011342_3	3.6\|2853904\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2853904-2853935	32	NC_010935	Comamonas testosteroni CNB-1 plasmid pCNB, complete sequence	28766-28797	10	0.688
NZ_CP011342_3	3.6\|2853904\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2853904-2853935	32	JX469826	Uncultured bacterium plasmid pB12, complete sequence	11283-11314	10	0.688
NZ_CP011342_3	3.6\|2853904\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2853904-2853935	32	JN106171	Uncultured bacterium plasmid pAKD26, complete sequence	11289-11320	10	0.688
NZ_CP011342_3	3.6\|2853904\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2853904-2853935	32	NC_016968	Comamonas testosteroni plasmid pTB30, complete sequence	11287-11318	10	0.688
NZ_CP011342_3	3.6\|2853904\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2853904-2853935	32	NC_016978	Comamonas testosteroni plasmid pI2, complete sequence	11272-11303	10	0.688
NZ_CP011342_3	3.6\|2853904\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2853904-2853935	32	NZ_CP017760	Cupriavidus necator strain NH9 plasmid pENH91, complete sequence	67078-67109	10	0.688
NZ_CP011342_3	3.6\|2853904\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2853904-2853935	32	NZ_CP053554	Diaphorobacter sp. JS3050 plasmid pDCNB, complete sequence	4235-4266	10	0.688
NZ_CP011342_3	3.6\|2853904\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2853904-2853935	32	NC_019263	Delftia acidovorans plasmid pLME1, complete sequence	11288-11319	10	0.688
NZ_CP011342_3	3.6\|2853904\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2853904-2853935	32	NC_019264	Delftia acidovorans plasmid pNB8c, complete sequence	11288-11319	10	0.688
NZ_CP011342_3	3.6\|2853904\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2853904-2853935	32	NC_019283	Delftia acidovorans plasmid pC1-1, complete sequence	11288-11319	10	0.688
NZ_CP011342_3	3.6\|2853904\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2853904-2853935	32	NC_006830	Achromobacter xylosoxidans A8 plasmid pA81, complete sequence	11350-11381	10	0.688
NZ_CP011342_3	3.8\|2854026\|33\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854026-2854058	33	CP046443	Pseudomonas coronafaciens pv. coronafaciens strain B19001 plasmid unnamed2, complete sequence	31933-31965	10	0.697
NZ_CP011342_3	3.8\|2854026\|33\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854026-2854058	33	NZ_LT963392	Pseudomonas syringae pv. cerasicola isolate CFBP6109 plasmid PP1, complete sequence	103013-103045	10	0.697
NZ_CP011342_3	3.8\|2854026\|33\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854026-2854058	33	NZ_LT963392	Pseudomonas syringae pv. cerasicola isolate CFBP6109 plasmid PP1, complete sequence	110510-110542	10	0.697
NZ_CP011342_3	3.8\|2854026\|33\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854026-2854058	33	NZ_CP034079	Pseudomonas syringae pv. pisi str. PP1 plasmid pPP1-1, complete sequence	48454-48486	10	0.697
NZ_CP011342_3	3.8\|2854026\|33\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854026-2854058	33	NZ_CP034080	Pseudomonas syringae pv. pisi str. PP1 plasmid pPP1-2, complete sequence	39480-39512	10	0.697
NZ_CP011342_3	3.8\|2854026\|33\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854026-2854058	33	NC_005918	Pseudomonas syringae pv. maculicola strain ES4326 plasmid pPMA4326A, complete sequence	31117-31149	10	0.697
NZ_CP011342_3	3.8\|2854026\|33\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854026-2854058	33	NZ_CP047262	Pseudomonas syringae pv. maculicola str. ES4326 plasmid pPma4326A, complete sequence	30966-30998	10	0.697
NZ_CP011342_3	3.8\|2854026\|33\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854026-2854058	33	NZ_CP026560	Pseudomonas amygdali pv. morsprunorum strain R15244 plasmid p3_tig5, complete sequence	19118-19150	10	0.697
NZ_CP011342_3	3.8\|2854026\|33\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854026-2854058	33	NZ_LT963406	Pseudomonas syringae pv. avii isolate CFBP3846 plasmid PP4, complete sequence	54820-54852	10	0.697
NZ_CP011342_3	3.8\|2854026\|33\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854026-2854058	33	LT985193	Pseudomonas syringae strain CFBP 2116 genome assembly, plasmid: PP2	32077-32109	10	0.697
NZ_CP011342_3	3.8\|2854026\|33\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854026-2854058	33	NZ_LT963393	Pseudomonas syringae pv. cerasicola isolate CFBP6109 plasmid PP2, complete sequence	50597-50629	10	0.697
NZ_CP011342_3	3.8\|2854026\|33\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854026-2854058	33	NZ_LT985210	Pseudomonas syringae pv. cerasicola strain CFBP 6110 plasmid PP1, complete sequence	105842-105874	10	0.697
NZ_CP011342_3	3.8\|2854026\|33\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854026-2854058	33	NZ_LT985211	Pseudomonas syringae pv. cerasicola strain CFBP 6110 plasmid PP2, complete sequence	84272-84304	10	0.697
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP052797	Salmonella enterica subsp. enterica serovar Infantis strain CVM N18S2039 plasmid pN18S2039, complete sequence	45808-45839	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP052795	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0125 plasmid pN19S0125, complete sequence	282589-282620	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	NZ_CP047882	Salmonella enterica subsp. enterica serovar Infantis strain 119944 plasmid pESI, complete sequence	94965-94996	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP052804	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S973 plasmid pN17S0973, complete sequence	304288-304319	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP038508	Salmonella enterica subsp. enterica serovar Infantis strain FARPER-219 plasmid p-F219, complete sequence	112376-112407	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP052802	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S976 plasmid pN17S0976, complete sequence	315682-315713	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP052788	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0611 plasmid pN19S0611, complete sequence	203378-203409	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP052840	Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S024 plasmid pN16S024, complete sequence	127648-127679	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP052786	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0641 plasmid pN19S0641, complete sequence	215302-215333	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP052838	Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S097 plasmid pN16S097, complete sequence	214483-214514	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	NZ_CP028316	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 plasmid pSC-31-2, complete sequence	108893-108924	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP051676	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1234 plasmid pN16S1234, complete sequence	83669-83700	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP052783	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0679 plasmid pN19S0679-1, complete sequence	194119-194150	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP052836	Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S103 plasmid pN16S103, complete sequence	18410-18441	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	NZ_CP022063	Salmonella enterica strain FDAARGOS_312 plasmid unnamed3, complete sequence	64615-64646	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP052781	Salmonella enterica strain CVM N19S0949 plasmid pN19S0949, complete sequence	169480-169511	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP052834	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S041 plasmid pN17S0041, complete sequence	6457-6488	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP052793	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0388 plasmid pN19S0388, complete sequence	25758-25789	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP052779	Salmonella enterica strain 19TN07GT06K-S plasmid pN19S1233, complete sequence	140403-140434	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP052832	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1040 plasmid pN17S1040, complete sequence	160727-160758	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	NZ_CP031362	Salmonella enterica subsp. enterica serovar Heidelberg strain 5 plasmid p3, complete sequence	140152-140183	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP052830	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1105 plasmid pN17S1105, complete sequence	193709-193740	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP052828	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1126 plasmid pN17S1126, complete sequence	126974-127005	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP052826	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1245 plasmid pN17S0637, complete sequence	110984-111015	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	NZ_CP016409	Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502916 plasmid pFSIS1502916, complete sequence	94916-94947	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP052824	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1265 plasmid pN17S1265, complete sequence	91497-91528	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP052822	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1349 plasmid pN17S1349, complete sequence	110984-111015	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	NZ_CP016407	Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502169 plasmid pFSIS1502169, complete sequence	94916-94947	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP052820	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1442 plasmid pN17S1442, complete sequence	94916-94947	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	NZ_CP016413	Salmonella enterica subsp. enterica serovar Infantis strain CVM44454 plasmid pCVM44454, complete sequence	94916-94947	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	NZ_CP016411	Salmonella enterica subsp. enterica serovar Infantis strain N55391 plasmid pN55391, complete sequence	94916-94947	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP052816	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1598 plasmid pN17S1598	165317-165348	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP052814	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S349 plasmid pN17S0349, complete sequence	99109-99140	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	NZ_CP022662	Salmonella enterica subsp. enterica strain RM11065 plasmid pRM11065-2, complete sequence	54379-54410	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP052812	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S376 plasmid pN17S0376, complete sequence	1671-1702	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP052810	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S535 plasmid pN17S0535, complete sequence	212751-212782	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP052808	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S637 plasmid pN17S0637, complete sequence	306376-306407	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP052806	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S816 plasmid pN17S0816, complete sequence	164579-164610	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP052791	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0552 plasmid pN17S0637, complete sequence	168074-168105	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP052818	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1509 plasmid pN17S1509, complete sequence	190524-190555	10	0.688
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	CP052799	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S990 plasmid pN17S0990-1, complete sequence	6457-6488	10	0.688
NZ_CP011342_1	1.1\|409908\|59\|NZ_CP011342\|CRISPRCasFinder	409908-409966	59	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	40375-40433	11	0.814
NZ_CP011342_3	3.10\|2854150\|32\|NZ_CP011342\|CRISPRCasFinder,CRT,PILER-CR	2854150-2854181	32	NZ_CP026128	Acinetobacter baumannii strain ABNIH28 plasmid pABA-1fe1, complete sequence	49165-49196	11	0.656
NZ_CP011342_4	4.11\|2880155\|33\|NZ_CP011342\|CRISPRCasFinder,CRT	2880155-2880187	33	MF158039	Shigella phage Sf12, complete genome	4974-5006	11	0.667
NZ_CP011342_4	4.11\|2880155\|33\|NZ_CP011342\|CRISPRCasFinder,CRT	2880155-2880187	33	MF158042	Shigella phage Sd1, complete genome	937-969	11	0.667

1. spacer 4.11|2880155|33|NZ_CP011342|CRISPRCasFinder,CRT matches to NZ_LR134258 (Klebsiella aerogenes strain NCTC9644 plasmid 5, complete sequence) position: , mismatch: 4, identity: 0.879

gaaatgctggtgagcgttaatgccgcaaacaca	CRISPR spacer
gaaatgctggtgagcgttaacgccgcgaacccc	Protospacer
********************.*****.*** *

2. spacer 4.11|2880155|33|NZ_CP011342|CRISPRCasFinder,CRT matches to LR134281 (Klebsiella aerogenes strain NCTC9793 genome assembly, plasmid: 6) position: , mismatch: 4, identity: 0.879

gaaatgctggtgagcgttaatgccgcaaacaca	CRISPR spacer
gaaatgctggtgagcgttaacgccgcgaacccc	Protospacer
********************.*****.*** *

3. spacer 4.11|2880155|33|NZ_CP011342|CRISPRCasFinder,CRT matches to KY271401 (Klebsiella phage 1 LV-2017, complete genome) position: , mismatch: 4, identity: 0.879

gaaatgctggtgagcgttaatgccgcaaacaca	CRISPR spacer
gaaatgctggtgagcgttaacgccgcgaacccc	Protospacer
********************.*****.*** *

4. spacer 3.5|2853843|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NC_021229 (Arthrobacter nicotinovorans pAO1 megaplasmid sequence, strain ATCC 49919) position: , mismatch: 5, identity: 0.844

tgggcggcttgccttgcagccagctccagcag-	CRISPR spacer
tgggcggcttgcgttgcagcctgc-cgagcgga	Protospacer
************ ******** ** * ***.*

5. spacer 4.5|2880153|35|NZ_CP011342|PILER-CR matches to NZ_LR134258 (Klebsiella aerogenes strain NCTC9644 plasmid 5, complete sequence) position: , mismatch: 5, identity: 0.857

acgaaatgctggtgagcgttaatgccgcaaacaca	CRISPR spacer
atgaaatgctggtgagcgttaacgccgcgaacccc	Protospacer
*.********************.*****.*** *

6. spacer 4.5|2880153|35|NZ_CP011342|PILER-CR matches to LR134281 (Klebsiella aerogenes strain NCTC9793 genome assembly, plasmid: 6) position: , mismatch: 5, identity: 0.857

acgaaatgctggtgagcgttaatgccgcaaacaca	CRISPR spacer
atgaaatgctggtgagcgttaacgccgcgaacccc	Protospacer
*.********************.*****.*** *

7. spacer 4.5|2880153|35|NZ_CP011342|PILER-CR matches to KY271401 (Klebsiella phage 1 LV-2017, complete genome) position: , mismatch: 5, identity: 0.857

acgaaatgctggtgagcgttaatgccgcaaacaca	CRISPR spacer
atgaaatgctggtgagcgttaacgccgcgaacccc	Protospacer
*.********************.*****.*** *

8. spacer 3.5|2853843|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017422 (Arthrobacter sp. ZXY-2 plasmid pZXY21, complete sequence) position: , mismatch: 6, identity: 0.812

tgggcggcttgccttgcagccagctccagcag-	CRISPR spacer
ggggcggcttgcgttgcagcctgc-cgagcgga	Protospacer
 *********** ******** ** * ***.*

9. spacer 3.11|2854211|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to KY883647 (Vibrio phage JSF33, complete genome) position: , mismatch: 6, identity: 0.812

agcgtgttcggcatcacctttggcttcggctg	CRISPR spacer
agcagtttcggcatcagctttggctttggctt	Protospacer
***.  ********** *********.****

10. spacer 3.12|2854272|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009293 (Novosphingobium pentaromativorans US6-1 plasmid pLA4, complete sequence) position: , mismatch: 6, identity: 0.812

tgcgtgagcgtatcgccgcgcgtctgcgaaag	CRISPR spacer
agaatgagcgtgtcgccgcgcgtctgcgtgag	Protospacer
 * .*******.**************** .**

11. spacer 4.11|2880155|33|NZ_CP011342|CRISPRCasFinder,CRT matches to KY653119 (Morganella phage IME1369_02, complete genome) position: , mismatch: 6, identity: 0.818

gaaatgctggtgagcgttaatgccgcaaacaca	CRISPR spacer
gaaatgctggtcagcgttaacgccgcacaacct	Protospacer
*********** ********.****** *  *

12. spacer 4.5|2880153|35|NZ_CP011342|PILER-CR matches to KY653119 (Morganella phage IME1369_02, complete genome) position: , mismatch: 7, identity: 0.8

acgaaatgctggtgagcgttaatgccgcaaacaca	CRISPR spacer
atgaaatgctggtcagcgttaacgccgcacaacct	Protospacer
*.*********** ********.****** *  *

13. spacer 3.1|2853599|32|NZ_CP011342|CRISPRCasFinder,CRT matches to NZ_AP018516 (Acetobacter orientalis strain FAN1 plasmid pAOF1, complete sequence) position: , mismatch: 8, identity: 0.75

cagcgtcaggcgtgaaatctcaccgtcgttgc	CRISPR spacer
attctttaggcgtgacatcttaccgtcgttga	Protospacer
   * *.******** ****.**********

14. spacer 3.5|2853843|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to MK113951 (Phage 5P_3, complete genome) position: , mismatch: 8, identity: 0.75

tgggcggcttgccttgcagccagctccagcag	CRISPR spacer
ggggcagcttgccttgcagccagccgatgctc	Protospacer
 ****.******************.   **

15. spacer 3.5|2853843|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to AP017924 (Ralstonia phage RP12 DNA, complete genome) position: , mismatch: 8, identity: 0.75

tgggcggcttgccttgcagccagctccagcag	CRISPR spacer
tgggccgcttgccgtgcagccagcgcttccgc	Protospacer
***** ******* ********** *.  *.

16. spacer 3.8|2854026|33|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NC_013856 (Azospirillum sp. B510 plasmid pAB510b, complete sequence) position: , mismatch: 8, identity: 0.758

gcaggcggcgacgcgcagggtatgcgcgattcg	CRISPR spacer
cgcgtcggcgacgcgcaggtaatgcgcgatcag	Protospacer
   * **************  *********. *

17. spacer 3.11|2854211|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to MN855762 (Bacteriophage sp. isolate 505, complete genome) position: , mismatch: 8, identity: 0.75

agcgtgttcggcatcacctttggcttcggctg	CRISPR spacer
gaccagctcgaaatcacctttggcttcggctt	Protospacer
..*  *.***. *******************

18. spacer 3.11|2854211|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NC_020548 (Azoarcus sp. KH32C plasmid pAZKH, complete sequence) position: , mismatch: 8, identity: 0.75

agcgtgtt---cggcatcacctttggcttcggctg	CRISPR spacer
---ctgctcgccggcatcaccttcggcttctgcta	Protospacer
    **.*   ************.****** ***.

19. spacer 3.12|2854272|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.75

tgcgtgagcgtatcgccgcgcgtctgcgaaag-	CRISPR spacer
agcgagagcgtatcgccgcgc-ttcgtgaagcc	Protospacer
 *** **************** *..*.***.

20. spacer 4.10|2880094|33|NZ_CP011342|CRISPRCasFinder,CRT matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.758

tggctctgcaacagcagcacccatgaccacgtc	CRISPR spacer
cgctccagcaacagcagcacccacgaccacgga	Protospacer
.* ..* ****************.*******

21. spacer 3.8|2854026|33|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010957 (Sphingobium sp. YBL2 plasmid 3pYBL2-3, complete sequence) position: , mismatch: 9, identity: 0.727

gcaggcggcgacgcgcagggtatgcgcgattcg	CRISPR spacer
cgaggcggcgacacgcaaggtatgcgggtcgag	Protospacer
  **********.****.******** * .  *

22. spacer 3.11|2854211|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015585 (Roseomonas gilardii strain U14-5 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.719

agcgtgttcggcatcacctttggcttcggctg	CRISPR spacer
atccgcacgggcatcacctttggctccagctg	Protospacer
* *    . ****************.*.****

23. spacer 3.11|2854211|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054618 (Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

agcgtgttcggcatcacctttggcttcggctg	CRISPR spacer
ctcggcctcggcaacacctttgccttcggcgc	Protospacer
  **  .****** ******** *******

24. spacer 3.12|2854272|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to MN234174 (Mycobacterium phage Efra2, complete genome) position: , mismatch: 9, identity: 0.719

tgcgtgagcgtatcgccgcgcgtctgcgaaag	CRISPR spacer
gccgtgagcgtgacgccgcgcgtctggtgatc	Protospacer
  *********. *************  .*

25. spacer 3.12|2854272|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to MN234165 (Mycobacterium phage Yunkel11, complete genome) position: , mismatch: 9, identity: 0.719

tgcgtgagcgtatcgccgcgcgtctgcgaaag	CRISPR spacer
gccgtgagcgtgacgccgcgcgtctggtgatc	Protospacer
  *********. *************  .*

26. spacer 3.12|2854272|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to MN234201 (Mycobacterium phage Guanica15, complete genome) position: , mismatch: 9, identity: 0.719

tgcgtgagcgtatcgccgcgcgtctgcgaaag	CRISPR spacer
gccgtgagcgtgacgccgcgcgtctggtgatc	Protospacer
  *********. *************  .*

27. spacer 1.1|409908|59|NZ_CP011342|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 10, identity: 0.831

ggtgccagaaccgtaggccggataaggcgttcacgccgcatccggcaataagtgctccg-	CRISPR spacer
gagcacagaaccgtaggacggataaggcgttcacgccgcatccggcgat-cgtgcactga	Protospacer
*.   ************ ****************************.**  **** *.*

28. spacer 3.5|2853843|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NC_002580 (Propionibacterium freudenreichii plasmid p545, complete sequence) position: , mismatch: 10, identity: 0.688

tgggcggcttgccttgcagccagctccagcag	CRISPR spacer
ccagcggcttgcgtggcagccagctctcaggg	Protospacer
. .********* * ***********. . .*

29. spacer 3.6|2853904|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028970 (Aminobacter sp. MSH1 plasmid pUSP2, complete sequence) position: , mismatch: 10, identity: 0.688

aagctggctggcaatctctttcggggtgagtc	CRISPR spacer
gcgtgtgctggcaatcgcttccggggtgacgt	Protospacer
. *.  ********** ***.********  .

30. spacer 3.6|2853904|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053984 (Achromobacter pestifer strain FDAARGOS_790 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

aagctggctggcaatctctttcggggtgagtc	CRISPR spacer
aagctggctggcattctcattcgtcagtacct	Protospacer
************* **** ****  .  * ..

31. spacer 3.6|2853904|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NC_010935 (Comamonas testosteroni CNB-1 plasmid pCNB, complete sequence) position: , mismatch: 10, identity: 0.688

aagctggctggcaatctctttcggggtgagtc	CRISPR spacer
aagctggctggcattctcattcgtcagtacct	Protospacer
************* **** ****  .  * ..

32. spacer 3.6|2853904|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to JX469826 (Uncultured bacterium plasmid pB12, complete sequence) position: , mismatch: 10, identity: 0.688

aagctggctggcaatctctttcggggtgagtc	CRISPR spacer
aagctggctggcattctcattcgtcagtacct	Protospacer
************* **** ****  .  * ..

33. spacer 3.6|2853904|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to JN106171 (Uncultured bacterium plasmid pAKD26, complete sequence) position: , mismatch: 10, identity: 0.688

aagctggctggcaatctctttcggggtgagtc	CRISPR spacer
aagctggctggcattctcattcgtcagtacct	Protospacer
************* **** ****  .  * ..

34. spacer 3.6|2853904|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NC_016968 (Comamonas testosteroni plasmid pTB30, complete sequence) position: , mismatch: 10, identity: 0.688

aagctggctggcaatctctttcggggtgagtc	CRISPR spacer
aagctggctggcattctcattcgtcagtacct	Protospacer
************* **** ****  .  * ..

35. spacer 3.6|2853904|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NC_016978 (Comamonas testosteroni plasmid pI2, complete sequence) position: , mismatch: 10, identity: 0.688

aagctggctggcaatctctttcggggtgagtc	CRISPR spacer
aagctggctggcattctcattcgtcagtacct	Protospacer
************* **** ****  .  * ..

36. spacer 3.6|2853904|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017760 (Cupriavidus necator strain NH9 plasmid pENH91, complete sequence) position: , mismatch: 10, identity: 0.688

aagctggctggcaatctctttcggggtgagtc	CRISPR spacer
aagctggctggcattctcattcgtcagtacct	Protospacer
************* **** ****  .  * ..

37. spacer 3.6|2853904|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053554 (Diaphorobacter sp. JS3050 plasmid pDCNB, complete sequence) position: , mismatch: 10, identity: 0.688

aagctggctggcaatctctttcggggtgagtc	CRISPR spacer
aagctggctggcattctcattcgtcagtacct	Protospacer
************* **** ****  .  * ..

38. spacer 3.6|2853904|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NC_019263 (Delftia acidovorans plasmid pLME1, complete sequence) position: , mismatch: 10, identity: 0.688

aagctggctggcaatctctttcggggtgagtc	CRISPR spacer
aagctggctggcattctcattcgtcagtacct	Protospacer
************* **** ****  .  * ..

39. spacer 3.6|2853904|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NC_019264 (Delftia acidovorans plasmid pNB8c, complete sequence) position: , mismatch: 10, identity: 0.688

aagctggctggcaatctctttcggggtgagtc	CRISPR spacer
aagctggctggcattctcattcgtcagtacct	Protospacer
************* **** ****  .  * ..

40. spacer 3.6|2853904|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NC_019283 (Delftia acidovorans plasmid pC1-1, complete sequence) position: , mismatch: 10, identity: 0.688

aagctggctggcaatctctttcggggtgagtc	CRISPR spacer
aagctggctggcattctcattcgtcagtacct	Protospacer
************* **** ****  .  * ..

41. spacer 3.6|2853904|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NC_006830 (Achromobacter xylosoxidans A8 plasmid pA81, complete sequence) position: , mismatch: 10, identity: 0.688

aagctggctggcaatctctttcggggtgagtc	CRISPR spacer
aagctggctggcattctcattcgtcagtacct	Protospacer
************* **** ****  .  * ..

42. spacer 3.8|2854026|33|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP046443 (Pseudomonas coronafaciens pv. coronafaciens strain B19001 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.697

gcaggcggcgacgcgcagggtatgcgcgattcg	CRISPR spacer
accggcggcgacgcgcaggagatgcgcagcgaa	Protospacer
.* ****************. ******...  .

43. spacer 3.8|2854026|33|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT963392 (Pseudomonas syringae pv. cerasicola isolate CFBP6109 plasmid PP1, complete sequence) position: , mismatch: 10, identity: 0.697

gcaggcggcgacgcgcagggtatgcgcgattcg	CRISPR spacer
accggcggcgacgcgcaggagatgcgcagcgaa	Protospacer
.* ****************. ******...  .

44. spacer 3.8|2854026|33|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT963392 (Pseudomonas syringae pv. cerasicola isolate CFBP6109 plasmid PP1, complete sequence) position: , mismatch: 10, identity: 0.697

gcaggcggcgacgcgcagggtatgcgcgattcg	CRISPR spacer
accggcggcgacgcgcaggagatgcgcagcgaa	Protospacer
.* ****************. ******...  .

45. spacer 3.8|2854026|33|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034079 (Pseudomonas syringae pv. pisi str. PP1 plasmid pPP1-1, complete sequence) position: , mismatch: 10, identity: 0.697

gcaggcggcgacgcgcagggtatgcgcgattcg	CRISPR spacer
accggcggcgacgcgcaggagatgcgcagcgaa	Protospacer
.* ****************. ******...  .

46. spacer 3.8|2854026|33|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034080 (Pseudomonas syringae pv. pisi str. PP1 plasmid pPP1-2, complete sequence) position: , mismatch: 10, identity: 0.697

gcaggcggcgacgcgcagggtatgcgcgattcg	CRISPR spacer
accggcggcgacgcgcaggagatgcgcagcgaa	Protospacer
.* ****************. ******...  .

47. spacer 3.8|2854026|33|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NC_005918 (Pseudomonas syringae pv. maculicola strain ES4326 plasmid pPMA4326A, complete sequence) position: , mismatch: 10, identity: 0.697

gcaggcggcgacgcgcagggtatgcgcgattcg	CRISPR spacer
accggcggcgacgcgcaggagatgcgcagcgaa	Protospacer
.* ****************. ******...  .

48. spacer 3.8|2854026|33|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047262 (Pseudomonas syringae pv. maculicola str. ES4326 plasmid pPma4326A, complete sequence) position: , mismatch: 10, identity: 0.697

gcaggcggcgacgcgcagggtatgcgcgattcg	CRISPR spacer
accggcggcgacgcgcaggagatgcgcagcgaa	Protospacer
.* ****************. ******...  .

49. spacer 3.8|2854026|33|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026560 (Pseudomonas amygdali pv. morsprunorum strain R15244 plasmid p3_tig5, complete sequence) position: , mismatch: 10, identity: 0.697

gcaggcggcgacgcgcagggtatgcgcgattcg	CRISPR spacer
accggcggcgacgcgcaggagatgcgcagcgaa	Protospacer
.* ****************. ******...  .

50. spacer 3.8|2854026|33|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT963406 (Pseudomonas syringae pv. avii isolate CFBP3846 plasmid PP4, complete sequence) position: , mismatch: 10, identity: 0.697

gcaggcggcgacgcgcagggtatgcgcgattcg	CRISPR spacer
accggcggcgacgcgcaggagatgcgcagcgaa	Protospacer
.* ****************. ******...  .

51. spacer 3.8|2854026|33|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to LT985193 (Pseudomonas syringae strain CFBP 2116 genome assembly, plasmid: PP2) position: , mismatch: 10, identity: 0.697

gcaggcggcgacgcgcagggtatgcgcgattcg	CRISPR spacer
accggcggcgacgcgcaggagatgcgcagcgaa	Protospacer
.* ****************. ******...  .

52. spacer 3.8|2854026|33|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT963393 (Pseudomonas syringae pv. cerasicola isolate CFBP6109 plasmid PP2, complete sequence) position: , mismatch: 10, identity: 0.697

gcaggcggcgacgcgcagggtatgcgcgattcg	CRISPR spacer
accggcggcgacgcgcaggagatgcgcagcgaa	Protospacer
.* ****************. ******...  .

53. spacer 3.8|2854026|33|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT985210 (Pseudomonas syringae pv. cerasicola strain CFBP 6110 plasmid PP1, complete sequence) position: , mismatch: 10, identity: 0.697

gcaggcggcgacgcgcagggtatgcgcgattcg	CRISPR spacer
accggcggcgacgcgcaggagatgcgcagcgaa	Protospacer
.* ****************. ******...  .

54. spacer 3.8|2854026|33|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT985211 (Pseudomonas syringae pv. cerasicola strain CFBP 6110 plasmid PP2, complete sequence) position: , mismatch: 10, identity: 0.697

gcaggcggcgacgcgcagggtatgcgcgattcg	CRISPR spacer
accggcggcgacgcgcaggagatgcgcagcgaa	Protospacer
.* ****************. ******...  .

55. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP052797 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N18S2039 plasmid pN18S2039, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

56. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP052795 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0125 plasmid pN19S0125, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

57. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047882 (Salmonella enterica subsp. enterica serovar Infantis strain 119944 plasmid pESI, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

58. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP052804 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S973 plasmid pN17S0973, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

59. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP038508 (Salmonella enterica subsp. enterica serovar Infantis strain FARPER-219 plasmid p-F219, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

60. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP052802 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S976 plasmid pN17S0976, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

61. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP052788 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0611 plasmid pN19S0611, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

62. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP052840 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S024 plasmid pN16S024, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

63. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP052786 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0641 plasmid pN19S0641, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

64. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP052838 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S097 plasmid pN16S097, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

65. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028316 (Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 plasmid pSC-31-2, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

66. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP051676 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1234 plasmid pN16S1234, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

67. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP052783 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0679 plasmid pN19S0679-1, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

68. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP052836 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S103 plasmid pN16S103, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

69. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022063 (Salmonella enterica strain FDAARGOS_312 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

70. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP052781 (Salmonella enterica strain CVM N19S0949 plasmid pN19S0949, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

71. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP052834 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S041 plasmid pN17S0041, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

72. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP052793 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0388 plasmid pN19S0388, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

73. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP052779 (Salmonella enterica strain 19TN07GT06K-S plasmid pN19S1233, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

74. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP052832 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1040 plasmid pN17S1040, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

75. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031362 (Salmonella enterica subsp. enterica serovar Heidelberg strain 5 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

76. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP052830 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1105 plasmid pN17S1105, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

77. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP052828 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1126 plasmid pN17S1126, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

78. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP052826 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1245 plasmid pN17S0637, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

79. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016409 (Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502916 plasmid pFSIS1502916, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

80. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP052824 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1265 plasmid pN17S1265, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

81. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP052822 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1349 plasmid pN17S1349, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

82. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016407 (Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502169 plasmid pFSIS1502169, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

83. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP052820 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1442 plasmid pN17S1442, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

84. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016413 (Salmonella enterica subsp. enterica serovar Infantis strain CVM44454 plasmid pCVM44454, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

85. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016411 (Salmonella enterica subsp. enterica serovar Infantis strain N55391 plasmid pN55391, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

86. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP052816 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1598 plasmid pN17S1598) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

87. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP052814 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S349 plasmid pN17S0349, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

88. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022662 (Salmonella enterica subsp. enterica strain RM11065 plasmid pRM11065-2, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

89. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP052812 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S376 plasmid pN17S0376, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

90. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP052810 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S535 plasmid pN17S0535, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

91. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP052808 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S637 plasmid pN17S0637, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

92. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP052806 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S816 plasmid pN17S0816, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

93. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP052791 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0552 plasmid pN17S0637, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

94. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP052818 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1509 plasmid pN17S1509, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

95. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to CP052799 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S990 plasmid pN17S0990-1, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

96. spacer 1.1|409908|59|NZ_CP011342|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 11, identity: 0.814

-ggtgccagaaccgtaggccggataaggcgttcacgccgcatccggcaataagtgctccg	CRISPR spacer
tcgcacca-aaccgtaggccggataaggcgtttacgccgcatccggcaaaaagccgtacc	Protospacer
  *..*** ***********************.**************** ***.  * *

97. spacer 3.10|2854150|32|NZ_CP011342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026128 (Acinetobacter baumannii strain ABNIH28 plasmid pABA-1fe1, complete sequence) position: , mismatch: 11, identity: 0.656

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gatacattgccaattacaaccgacagttcaaa	Protospacer
   *****..****************   .

98. spacer 4.11|2880155|33|NZ_CP011342|CRISPRCasFinder,CRT matches to MF158039 (Shigella phage Sf12, complete genome) position: , mismatch: 11, identity: 0.667

gaaatgctggtgagcgttaatgccgcaaacaca	CRISPR spacer
cggcacttggggagcgttaatgctgcaaacaat	Protospacer
 ..   .*** ************.*******

99. spacer 4.11|2880155|33|NZ_CP011342|CRISPRCasFinder,CRT matches to MF158042 (Shigella phage Sd1, complete genome) position: , mismatch: 11, identity: 0.667

gaaatgctggtgagcgttaatgccgcaaacaca	CRISPR spacer
cggcacttggagagcgttaatgctgcaaacaat	Protospacer
 ..   .*** ************.*******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

247628 : 296312

Streptococcus_phage(20.0%)

integrase,transposase

attL 262114:262173|attR 296422:296481

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000006255.1\|247628_248126_+\|transposase	REP-associated tyrosine transposase RayT	NA	NA	NA	NA
WP_001334802.1\|248349_250089_-	flagellar type III secretion system protein FlhA	NA	NA	NA	NA
WP_000207552.1\|250033_250819_+	putative lateral flagellar export/assembly protein LafU	NA	NA	NA	NA
WP_001226164.1\|250889_251945_+	DNA polymerase IV	NA	NA	NA	NA
WP_000554758.1\|251996_252290_+	type I toxin-antitoxin system antitoxin YafN	NA	NA	NA	NA
WP_001263489.1\|252292_252691_+	type II toxin-antitoxin system mRNA interferase toxin YafO	NA	NA	NA	NA
WP_001059892.1\|252700_253153_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001295202.1\|253458_253725_+	hypothetical protein	NA	NA	NA	NA
WP_001326471.1\|253657_254194_+	peptide chain release factor H	NA	NA	NA	NA
WP_001292994.1\|254250_255708_-	cytosol nonspecific dipeptidase	NA	NA	NA	NA
WP_001291990.1\|255968_256427_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA
WP_000189532.1\|256518_257763_+	esterase FrsA	NA	NA	NA	NA
WP_000174689.1\|257820_258222_+	sigma factor-binding protein Crl	NA	NA	NA	NA
WP_000749863.1\|258260_259316_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	9.1e-119	61.1
WP_001285288.1\|259603_260707_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
WP_000893278.1\|260718_261972_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	9.8e-96	47.2
262114:262173	attL	NA	NA	NA	NA
WP_000854672.1\|262543_262885_-	type IV toxin-antitoxin system toxin YkfI	NA	NA	NA	NA
WP_000070395.1\|262905_263223_-	type IV toxin-antitoxin system antitoxin YafW	NA	NA	NA	NA
WP_000691994.1\|263241_263463_-	DUF987 domain-containing protein	NA	NA	NA	NA
WP_000811693.1\|263471_263948_-	RadC family protein	NA	NA	NA	NA
WP_000211838.1\|263963_264422_-	antirestriction protein	A9J566	Pseudomonas_phage	2.0e-14	32.8
WP_000194654.1\|264519_264759_-	DUF905 domain-containing protein	NA	NA	NA	NA
WP_001547765.1\|264835_265303_-	hypothetical protein	NA	NA	NA	NA
WP_000824223.1\|265325_265769_-	lipoprotein, inner membrane; degP regulator; CP4-6 prophage	NA	NA	NA	NA
WP_001548158.1\|265768_265996_-	hypothetical protein	NA	NA	NA	NA
WP_000197389.1\|266399_267221_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	7.2e-47	39.4
WP_001065553.1\|267312_268176_-	GTPase family protein	NA	NA	NA	NA
WP_000770246.1\|268504_269398_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001254938.1\|269818_270970_+\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	8.9e-43	35.9
WP_010723085.1\|273316_274333_-\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	4.4e-187	100.0
WP_001393629.1\|274540_275944_+	S-methylmethionine permease	NA	NA	NA	NA
WP_000081352.1\|275930_276863_+	homocysteine S-methyltransferase	NA	NA	NA	NA
WP_000192349.1\|276971_278018_-	ferric ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.5e-33	37.7
WP_000015532.1\|279239_279578_-\|transposase	transposase	U5P4I9	Shigella_phage	2.7e-32	91.2
WP_001030800.1\|279600_279951_-	type IV toxin-antitoxin system antitoxin YagB	NA	NA	NA	NA
WP_010723086.1\|280044_281199_-\|transposase	IS481-like element ISEc19 family transposase	NA	NA	NA	NA
WP_001136613.1\|281493_282402_+	2-keto-3-deoxygluconate aldolase	NA	NA	NA	NA
WP_000151261.1\|282416_284384_+	xylonate dehydratase YagF	NA	NA	NA	NA
WP_000192863.1\|284610_285993_+	MFS transporter	NA	NA	NA	NA
WP_000406871.1\|286004_287615_+	glycoside hydrolase family 43 protein	NA	NA	NA	NA
WP_001121657.1\|287619_288378_-	DNA-binding transcriptional repressor XynR	NA	NA	NA	NA
WP_001281825.1\|288516_289521_-	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_000388269.1\|290715_291447_+	hypothetical protein	NA	NA	NA	NA
WP_000860996.1\|291537_292164_-	inovirus Gp2 family protein	NA	NA	NA	NA
WP_001214248.1\|292435_293134_-	recombinase family protein	NA	NA	NA	NA
WP_000072039.1\|293160_294015_-	hypothetical protein	NA	NA	NA	NA
WP_001272156.1\|294133_294358_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000224818.1\|294354_294795_-	hypothetical protein	NA	NA	NA	NA
WP_001407714.1\|294911_296312_-\|integrase	integrase family protein	A0A221SAN4	Ralstonia_phage	9.5e-07	28.4
296422:296481	attR	NA	NA	NA	NA

DBSCAN-SWA_2

517927 : 580886

Enterobacteria_phage(50.0%)

protease,lysis,integrase,terminase,transposase,tRNA

attL 563544:563590|attR 584846:584892

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001295836.1\|517927_518551_-\|protease	multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1	NA	NA	NA	NA
WP_001110573.1\|518521_519208_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.9e-33	35.6
WP_000561872.1\|519204_521619_+	ABC transporter permease	NA	NA	NA	NA
WP_000014739.1\|522049_526330_+	rhs element protein RhsD	A0A2H4JFP5	uncultured_Caudovirales_phage	1.7e-22	32.1
WP_000877768.1\|526369_526738_+	immunity protein	NA	NA	NA	NA
WP_001320180.1\|527428_527689_+	hypothetical protein	NA	NA	NA	NA
WP_001157938.1\|528920_530015_-\|tRNA	tRNA 2-selenouridine(34) synthase MnmH	NA	NA	NA	NA
WP_000460145.1\|530083_531010_-	HTH-type transcriptional activator AllS	NA	NA	NA	NA
WP_000776377.1\|531239_531722_+	ureidoglycolate lyase	NA	NA	NA	NA
WP_000141275.1\|531799_532615_+	HTH-type transcriptional repressor AllR	NA	NA	NA	NA
WP_001096881.1\|532704_534486_+	glyoxylate carboligase	E4WLQ6	Ostreococcus_tauri_virus	3.5e-38	27.0
WP_000943544.1\|534498_535275_+	hydroxypyruvate isomerase	NA	NA	NA	NA
WP_000765839.1\|535374_536253_+	2-hydroxy-3-oxopropionate reductase	NA	NA	NA	NA
WP_000401100.1\|536421_537876_+	putative allantoin permease	NA	NA	NA	NA
WP_000006900.1\|537935_539297_+	allantoinase AllB	NA	NA	NA	NA
WP_001302767.1\|539353_540655_+	uracil/xanthine transporter	NA	NA	NA	NA
WP_001333621.1\|540676_541822_+	glycerate 3-kinase	W6LM47	Streptococcus_phage	9.1e-48	41.6
WP_000540997.1\|542049_542835_-	(S)-ureidoglycine aminohydrolase	NA	NA	NA	NA
WP_001310618.1\|542845_544081_-	allantoate deiminase	NA	NA	NA	NA
WP_000703900.1\|544102_545152_-	ureidoglycolate dehydrogenase	NA	NA	NA	NA
WP_000580829.1\|545468_547136_+	acyl-CoA synthetase FdrA	NA	NA	NA	NA
WP_000495367.1\|547145_548405_+	DUF1116 domain-containing protein	NA	NA	NA	NA
WP_000152519.1\|548415_549231_+	DUF2877 domain-containing protein	NA	NA	NA	NA
WP_000855379.1\|549227_550121_+	carbamate kinase	NA	NA	NA	NA
WP_000815571.1\|550315_551383_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_001295318.1\|551379_551889_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA
WP_000212247.1\|552006_552729_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_000255997.1\|552731_553226_-	peptidylprolyl isomerase B	NA	NA	NA	NA
WP_000912385.1\|553399_554785_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	6.7e-45	34.5
WP_001143542.1\|554820_555342_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_000190288.1\|555449_555662_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_000729160.1\|555663_556530_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.7e-30	37.5
WP_000776555.1\|557000_557543_+	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA
WP_000988364.1\|557762_558455_+	type 1 fimbria chaperone FimC	NA	NA	NA	NA
WP_001333622.1\|558485_561089_+	fimbrial biogenesis usher protein	NA	NA	NA	NA
WP_001350487.1\|561067_562108_+	type 1 fimbrin D-mannose specific adhesin FimH	NA	NA	NA	NA
WP_001255230.1\|562118_562634_+	fimbria assembly protein	NA	NA	NA	NA
WP_000805428.1\|562636_563269_-	fimbria biosynthesis transcriptional regulator FimZ	NA	NA	NA	NA
563544:563590	attL	NA	NA	NA	NA
WP_001350488.1\|563603_564767_-\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	8.9e-200	86.6
WP_000672150.1\|564886_565150_-	exonuclease	B6DZ61	Enterobacteria_phage	1.8e-44	97.7
WP_000145909.1\|565472_565568_+	hypothetical protein	M1FPD5	Enterobacteria_phage	1.5e-09	100.0
WP_000169527.1\|565630_565930_+\|transposase	transposase	NA	NA	NA	NA
WP_000878218.1\|565926_566793_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.3e-51	40.6
WP_001070439.1\|567103_567436_+	SMR family multidrug efflux protein EmrE	NA	NA	NA	NA
WP_001372443.1\|567483_567633_+	hypothetical protein	NA	NA	NA	NA
WP_000709082.1\|567690_569217_+	recombinase family protein	Q3HQV4	Burkholderia_phage	7.9e-31	27.8
WP_001306955.1\|569681_570233_+	Raf kinase inhibitor-like protein YbcL	NA	NA	NA	NA
WP_000881075.1\|570242_571040_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001303586.1\|571156_571258_+	hypothetical protein	NA	NA	NA	NA
WP_001054340.1\|571254_571710_+	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	4.1e-60	66.9
WP_000224915.1\|571709_571880_+	protein NinE from lambdoid prophage DLP12	K7P7K0	Enterobacteria_phage	2.4e-13	69.8
WP_000774486.1\|571872_572163_+	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	3.3e-47	93.8
WP_001099712.1\|572159_572522_+	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	4.3e-60	96.5
WP_000971055.1\|572518_572659_+	YlcG family protein	K7PHH3	Enterobacteria_phage	1.1e-08	69.8
WP_001204791.1\|572744_573128_+	antitermination protein QuuD	A0A088CD47	Shigella_phage	4.4e-55	83.3
WP_077866150.1\|573525_574542_-\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	9.8e-187	99.7
WP_000737282.1\|574546_575614_-	porin	Q1MVN1	Enterobacteria_phage	2.0e-150	77.9
WP_000839596.1\|576186_576402_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	9.0e-34	100.0
WP_001135281.1\|576401_576899_+	lysozyme RrrD	M1FJA0	Enterobacteria_phage	1.1e-90	98.2
WP_001228697.1\|577115_577298_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	1.4e-16	78.3
WP_000738500.1\|577388_577682_-	serum resistance lipoprotein Bor	A0A2R2X2B2	Escherichia_phage	5.7e-47	97.9
WP_000079503.1\|577972_578383_-	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	1.2e-71	98.5
WP_001031427.1\|578668_578875_+	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	5.8e-30	100.0
WP_001421937.1\|579039_579234_-	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	8.7e-28	100.0
WP_000453566.1\|579622_580168_+	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	4.0e-94	98.3
WP_001027248.1\|580142_580886_+\|terminase	phage terminase large subunit family protein	K7PMH7	Enterobacteria_phage	4.1e-73	93.1
584846:584892	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1377943 : 1418761

Escherichia_phage(45.16%)

lysis,integrase,tail,transposase,tRNA

attL 1379090:1379108|attR 1409465:1409483

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010723085.1\|1377943_1378960_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	4.4e-187	100.0
1379090:1379108	attL	NA	NA	NA	NA
WP_000605090.1\|1379232_1379490_+	DUF2534 family protein	NA	NA	NA	NA
WP_001262123.1\|1379539_1380490_-	universal stress protein UspE	NA	NA	NA	NA
WP_000611911.1\|1380641_1381394_-	fumarate/nitrate reduction transcriptional regulator Fnr	NA	NA	NA	NA
WP_000945011.1\|1381588_1382104_-	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	1.1e-24	42.8
WP_000062973.1\|1382114_1383641_-	p-aminobenzoyl-glutamate transporter	NA	NA	NA	NA
WP_001156451.1\|1383677_1385123_-	p-aminobenzoyl-glutamate hydrolase subunit AbgB	NA	NA	NA	NA
WP_000444929.1\|1385122_1386433_-	p-aminobenzoyl-glutamate hydrolase subunit AbgA	NA	NA	NA	NA
WP_000885458.1\|1386608_1387517_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001046829.1\|1387846_1388410_+	DNA endonuclease SmrA	NA	NA	NA	NA
WP_000628058.1\|1388430_1389663_-	diguanylate cyclase DgcM	A0A127AWB9	Bacillus_phage	3.1e-17	39.5
WP_000387388.1\|1389917_1390901_+	zinc transporter ZntB	NA	NA	NA	NA
WP_000123737.1\|1391378_1392752_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.6e-53	33.1
WP_001157406.1\|1392880_1393816_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	5.9e-146	98.8
WP_000040852.1\|1393867_1395103_-\|integrase	site-specific integrase	A0A0U2JGI6	Escherichia_phage	5.5e-240	98.8
WP_000079604.1\|1395104_1395320_-	excisionase XisR	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
WP_000276809.1\|1395398_1395608_-	double-strand break reduction protein RcbA	A0A0U2QL97	Escherichia_phage	6.1e-27	98.4
WP_001317028.1\|1395600_1395795_-	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	A0A0U2QQP4	Escherichia_phage	5.8e-32	96.9
WP_000166319.1\|1395851_1396661_-	recombination protein RecT	A0A1P8DTF2	Proteus_phage	8.8e-106	71.5
WP_000105143.1\|1396653_1399254_-	exodeoxyribonuclease VIII	A0A0U2I1R6	Escherichia_phage	5.1e-248	63.5
WP_000632297.1\|1399355_1399631_-	protein RacC	A0A0U2QW85	Escherichia_phage	1.4e-42	96.7
WP_001352098.1\|1399705_1399876_-	conserved protein, Rac prophage	A0A0U2SHB5	Escherichia_phage	3.6e-17	71.4
WP_000560225.1\|1399875_1400097_-	killing protein KilR	A0A0U2RTC4	Escherichia_phage	4.9e-35	97.3
WP_001312793.1\|1400538_1401027_+	superinfection exclusion protein B	NA	NA	NA	NA
WP_001169151.1\|1401023_1401179_-	YdaF family protein	M4QQ57	Salicola_phage	6.1e-08	55.3
WP_000948459.1\|1401632_1402109_-	DNA-binding transcriptional repressor RacR	A0A2D1GNH0	Pseudomonas_phage	2.2e-11	53.4
WP_000712069.1\|1402232_1402529_+	toxin YdaS	A0A0R6PH31	Moraxella_phage	9.6e-10	44.9
WP_000693797.1\|1402551_1402974_+	phage protein	A0A0U2RXZ9	Escherichia_phage	1.5e-69	95.0
WP_000899748.1\|1402986_1403844_+	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	8.3e-70	84.5
WP_000788970.1\|1403850_1404597_+	ATP-binding protein	V5UQI5	Shigella_phage	3.8e-111	78.9
WP_000450663.1\|1404619_1405180_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	1.9e-67	88.1
WP_001228696.1\|1405267_1405453_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.8e-15	98.2
WP_001097895.1\|1405649_1407107_+	Trk system potassium uptake protein TrkG	NA	NA	NA	NA
WP_001350510.1\|1407244_1407508_+	ParB N-terminal domain-containing protein	A0A0R6PD10	Moraxella_phage	6.3e-21	56.1
WP_000091628.1\|1407488_1407848_+	hypothetical protein	NA	NA	NA	NA
WP_000019448.1\|1409613_1410594_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	8.9e-185	99.1
1409465:1409483	attR	NA	NA	NA	NA
WP_000279097.1\|1410916_1414279_+\|tail	side tail fiber protein	X2KTY7	Enterobacteria_phage	8.1e-12	36.4
WP_000885611.1\|1414278_1414854_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	6.5e-103	95.3
WP_000078177.1\|1414951_1415542_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.6e-24	38.8
WP_000836770.1\|1415858_1416092_-	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	5.4e-32	87.0
WP_120795384.1\|1416160_1416274_-	Rac prophage; protein YnaM	A0A1C9IHU6	Salmonella_phage	8.4e-07	80.6
WP_001300461.1\|1417052_1417487_-	universal stress protein UspF	A0A1W6JNV4	Morganella_phage	1.8e-28	52.8
WP_000837921.1\|1417627_1418761_-	porin OmpN	Q1MVN1	Enterobacteria_phage	1.1e-117	58.5

DBSCAN-SWA_4

1611142 : 1630353

Enterobacteria_phage(40.91%)

lysis,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000527743.1\|1611142_1612603_-	mannitol dehydrogenase family protein	H8ZJP8	Ostreococcus_tauri_virus	4.3e-42	29.6
WP_000347482.1\|1612691_1613975_-	MHS family MFS transporter	NA	NA	NA	NA
WP_120795384.1\|1614579_1614693_+	Rac prophage; protein YnaM	A0A1C9IHU6	Salmonella_phage	8.4e-07	80.6
WP_000836770.1\|1614761_1614995_+	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	5.4e-32	87.0
WP_000086527.1\|1615311_1615902_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.6e-24	38.8
WP_001698950.1\|1615999_1616575_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.5e-102	94.8
WP_001027733.1\|1616574_1617537_-\|tail	tail fiber protein	K7PHC9	Enterobacteria_phage	4.1e-41	70.9
WP_000453612.1\|1617487_1618057_-	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	1.5e-91	98.3
WP_001368374.1\|1618445_1618679_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	2.5e-21	84.1
WP_000373090.1\|1618736_1619147_+	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	2.5e-56	79.4
WP_001019606.1\|1619298_1619472_-	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
WP_001309517.1\|1619643_1619799_-	hypothetical protein	NA	NA	NA	NA
WP_120795388.1\|1619877_1619943_-	Qin prophage; protein YnfR	NA	NA	NA	NA
WP_071524604.1\|1619945_1620134_-	cold-shock protein	NA	NA	NA	NA
WP_000066495.1\|1620144_1620357_-	cold shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
WP_001071769.1\|1620719_1621217_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	2.9e-06	29.5
WP_001092971.1\|1621213_1621747_-	lysozyme	K7PLY1	Enterobacteria_phage	6.4e-97	93.2
WP_000189916.1\|1621743_1622055_-	YdfR family protein	K7PGU6	Enterobacteria_phage	2.0e-26	64.6
WP_000839590.1\|1622059_1622275_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.1e-31	94.4
WP_000066484.1\|1623028_1623244_-	cold shock-like protein CspB	A0A1W6JNX5	Morganella_phage	3.4e-25	76.5
WP_000087756.1\|1623544_1623757_+	cold shock-like protein CspF	NA	NA	NA	NA
WP_120795389.1\|1623811_1623901_+	Qin prophage; protein YnfS	NA	NA	NA	NA
WP_001047135.1\|1624178_1624931_-	antitermination protein	A0A192Y5X6	Salmonella_phage	7.1e-134	92.8
WP_001265198.1\|1624944_1625994_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.3e-112	57.3
WP_012304870.1\|1625995_1626274_-	hypothetical protein	NA	NA	NA	NA
WP_000980994.1\|1626340_1626592_-	hypothetical protein	NA	NA	NA	NA
WP_000813254.1\|1626808_1626964_-	type I toxin-antitoxin system toxin HokD	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
WP_000323025.1\|1627035_1627323_-	type II toxin-antitoxin system mRNA interferase RelE	A0A2H4JBF4	uncultured_Caudovirales_phage	1.4e-29	66.0
WP_000534858.1\|1627322_1627562_-	type II toxin-antitoxin system antitoxin RelB	A0A2H4JBG1	uncultured_Caudovirales_phage	1.6e-18	54.4
WP_001326990.1\|1627586_1627892_+	hypothetical protein	NA	NA	NA	NA
WP_001301033.1\|1628094_1628427_+	protein FlxA	NA	NA	NA	NA
WP_011443592.1\|1628863_1629013_-	hypothetical protein	NA	NA	NA	NA
WP_000920568.1\|1629309_1629540_-	dicB transcriptional regulator DicC	NA	NA	NA	NA
WP_000448564.1\|1629623_1630031_+	DNA-binding transcriptional dual regulator DicA	K7PM82	Enterobacteria_phage	4.4e-13	54.7
WP_000379575.1\|1630197_1630353_+	DUF1391 family protein	M4QQ57	Salicola_phage	3.0e-07	53.2

DBSCAN-SWA_5

2446683 : 2459154

Enterobacteria_phage(43.75%)

integrase,transposase,tail

attL 2444658:2444674|attR 2462829:2462845

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2444658:2444674	attL	NA	NA	NA	NA
WP_000368140.1\|2446683_2447616_+	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	2.5e-165	99.0
WP_000958671.1\|2447927_2449085_+\|integrase	prophage integrase IntS	A5VW56	Enterobacteria_phage	5.7e-223	100.0
WP_000915541.1\|2449237_2449600_+	GtrA family protein	U5P0S6	Shigella_phage	1.0e-53	88.3
WP_000169527.1\|2449748_2450048_+\|transposase	transposase	NA	NA	NA	NA
WP_000878218.1\|2450044_2450911_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.3e-51	40.6
WP_001030215.1\|2451774_2453106_+	hypothetical protein	U5P0I5	Shigella_phage	6.8e-63	36.7
WP_047792215.1\|2453140_2453422_-	hypothetical protein	NA	NA	NA	NA
WP_001106835.1\|2453720_2454161_-\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	9.5e-54	70.1
WP_011443597.1\|2454187_2454706_-	hypothetical protein	M1FN94	Enterobacteria_phage	4.6e-39	68.8
WP_000066913.1\|2454755_2455031_-	phage N-6-adenine-methyltransferase	Q8SBE9	Shigella_phage	2.6e-49	100.0
WP_001393497.1\|2455030_2455525_-	PerC family transcriptional regulator	A0A0P0ZCF0	Stx2-converting_phage	1.2e-86	98.1
WP_000128175.1\|2455521_2455890_-	hypothetical protein	U5P0A0	Shigella_phage	1.3e-69	99.2
WP_000135673.1\|2456247_2456610_+	hypothetical protein	Q8SBF8	Shigella_phage	1.9e-60	99.2
WP_000081278.1\|2456675_2457500_+	YfdQ family protein	K7PJQ6	Enterobacteria_phage	7.8e-150	99.3
WP_000008183.1\|2457627_2458164_+	5'-deoxynucleotidase	K7PKJ9	Enterobacteria_phage	3.7e-100	98.9
WP_001242717.1\|2458154_2458517_+	phage protein	K7PH61	Enterobacteria_phage	2.0e-65	99.1
WP_000206809.1\|2458516_2458822_+	hypothetical protein	U5P0J0	Shigella_phage	2.2e-49	96.0
WP_001163428.1\|2458953_2459154_+	response regulator inhibitor TorI	K7P7V0	Enterobacteria_phage	2.4e-33	100.0
2462829:2462845	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2832961 : 2840100

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001272928.1\|2832961_2835523_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	3.0e-30	20.6
WP_001141337.1\|2835628_2836285_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	4.7e-49	46.3
WP_001272547.1\|2836335_2837133_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.3e-69	56.0
WP_000848004.1\|2837298_2838207_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	4.3e-117	76.5
WP_001393459.1\|2838203_2839370_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.1e-120	60.6
WP_001278994.1\|2839461_2840100_+	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0

DBSCAN-SWA_7

3342180 : 3407335

Escherichia_phage(10.0%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010723085.1\|3342180_3343197_-\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	4.4e-187	100.0
WP_001067008.1\|3343404_3344121_+	DUF1120 domain-containing protein	NA	NA	NA	NA
WP_000445111.1\|3344305_3345433_+	DUF1016 domain-containing protein	A0A0U2BZN7	Salmonella_phage	4.7e-73	88.5
WP_000979882.1\|3345492_3345957_-	YhcH/YjgK/YiaL family protein	NA	NA	NA	NA
WP_000209011.1\|3345953_3346829_-	N-acetylmannosamine kinase	NA	NA	NA	NA
WP_000054239.1\|3346825_3347515_-	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA
WP_000108454.1\|3347562_3349053_-	sialic acid transporter NanT	Q6JIH2	Burkholderia_virus	6.4e-09	23.6
WP_000224714.1\|3349161_3350055_-	N-acetylneuraminate lyase	NA	NA	NA	NA
WP_000523845.1\|3350176_3350968_-	transcriptional regulator NanR	NA	NA	NA	NA
WP_000467018.1\|3351347_3352715_+	anaerobic C4-dicarboxylate transporter DcuC	NA	NA	NA	NA
WP_000366129.1\|3352757_3353255_-\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	3.3e-26	42.9
WP_000257293.1\|3353260_3353899_-	stringent starvation protein A	NA	NA	NA	NA
WP_000829818.1\|3354293_3354686_-	30S ribosomal protein S9	NA	NA	NA	NA
WP_000847559.1\|3354701_3355130_-	50S ribosomal protein L13	NA	NA	NA	NA
WP_001192332.1\|3355348_3356476_-	cell division protein ZapE	NA	NA	NA	NA
WP_001295270.1\|3356669_3357068_+	DUF1043 family protein	NA	NA	NA	NA
WP_001295271.1\|3357221_3358589_+\|protease	serine endoprotease DegQ	A0A1B1IT49	uncultured_Mediterranean_phage	2.3e-21	25.6
WP_000497723.1\|3358678_3359746_+	outer membrane-stress sensor serine endopeptidase DegS	A0A1S5Y2X3	uncultured_archaeal_virus	6.8e-05	24.2
WP_001295272.1\|3359808_3360747_-	malate dehydrogenase	NA	NA	NA	NA
WP_001257846.1\|3361181_3361652_+	transcriptional regulator ArgR	NA	NA	NA	NA
WP_000695690.1\|3362016_3362280_+	peroxide/acid stress response protein YhcN	NA	NA	NA	NA
WP_001029013.1\|3362335_3362608_-	barnase inhibitor	NA	NA	NA	NA
WP_000510965.1\|3362699_3364667_-	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA
WP_000854021.1\|3364672_3365605_-	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA
WP_000051841.1\|3365612_3365816_-	AaeX family protein	NA	NA	NA	NA
WP_000440317.1\|3365998_3366928_+	HTH-type transcriptional activator AaeR	NA	NA	NA	NA
WP_000055909.1\|3367061_3368507_-\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_001253618.1\|3368845_3372646_-	AsmA2 domain-containing protein	NA	NA	NA	NA
WP_000123197.1\|3372713_3374183_-	ribonuclease G	NA	NA	NA	NA
WP_000203105.1\|3374172_3374766_-	nucleoside triphosphate pyrophosphatase YhdE	NA	NA	NA	NA
WP_000179409.1\|3374774_3375263_-	rod shape-determining protein MreD	NA	NA	NA	NA
WP_000802511.1\|3375262_3376366_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_000913396.1\|3376431_3377475_-	rod shape-determining protein MreB	F2Y0P3	Organic_Lake_phycodnavirus	6.7e-05	22.3
WP_001241469.1\|3377779_3379720_-	RNase E specificity factor CsrD	NA	NA	NA	NA
WP_001148481.1\|3379871_3380846_+	oxidoreductase	NA	NA	NA	NA
WP_000354622.1\|3381823_3382294_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_000884639.1\|3382304_3383654_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_000381173.1\|3383762_3384005_+	YhdT family protein	NA	NA	NA	NA
WP_001175728.1\|3383994_3385446_+	sodium/pantothenate symporter	NA	NA	NA	NA
WP_001145827.1\|3385457_3386339_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_001219652.1\|3386667_3387633_+\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_000462905.1\|3387658_3387955_+	DNA-binding transcriptional regulator Fis	NA	NA	NA	NA
WP_001258895.1\|3388040_3388925_+	adenine-specific DNA-methyltransferase	M4QNN5	Ostreococcus_lucimarinus_virus	1.9e-24	30.2
WP_001295275.1\|3389008_3389188_+	DUF2556 family protein	NA	NA	NA	NA
WP_001129518.1\|3389190_3389853_-	multidrug efflux transporter transcriptional repressor AcrS	NA	NA	NA	NA
WP_000160334.1\|3390251_3391409_+	multidrug efflux RND transporter periplasmic adaptor subunit AcrE	NA	NA	NA	NA
WP_001273238.1\|3391420_3394525_+	multidrug efflux RND transporter permease subunit AcrF	NA	NA	NA	NA
WP_000825639.1\|3394777_3394999_+	membrane protein	NA	NA	NA	NA
WP_000019655.1\|3396521_3397703_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_001300681.1\|3397712_3398816_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_000078349.1\|3398823_3399582_+	amino acid ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	9.1e-20	30.8
WP_001286216.1\|3405387_3405942_+	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_047281862.1\|3405917_3406160_-	DUF1488 domain-containing protein	NA	NA	NA	NA
WP_000878218.1\|3406172_3407039_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.3e-51	40.6
WP_000169527.1\|3407035_3407335_-\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011342

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection