CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011542	Corynebacterium mustelae strain DSM 45274 chromosome, complete genome	6 crisprs	cas7,cse2gr11,cas8e,cas6e,cas3,cas1,cas2,DEDDh,csa3,WYL,cas5,DinG	2	27	3	0
NZ_CP011543	Corynebacterium mustelae strain DSM 45274 plasmid pCmus45274, complete sequence	1 crisprs	NA	0	2	3	0
NZ_CP011544	Corynebacterium mustelae strain DSM 45274 plasmid phiCmus45274, complete sequence	0 crisprs	NA	0	0	1	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011542_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011542_1

40997-41824

TypeI-E

I-C,I-E,II-B

Consensus_repeat	Method
GTATTCTCCGCGCATGCGGAGGTAGTTCCNN	CRT
GTATTCTCCGCGCATGCGGAGGTAGTTCC	PILER-CR
GTATTCTCCGCGCATGCGGAGGTAGTTCC	CRISPRCasFinder

13 spacers

cas1,cas3,cas6e,cas8e,cse2gr11,cas7,cas5

The CRISPR arrays of NZ_CP011542_1

>merge|NZ_CP011542|1|40997-41824|CRT,PILER-CR,CRISPRCasFinder
TAATTCTCCGGAATCAAATTTCGCATAAAAGCGAGACTTTGCTATTAATATATCAGGCTCACGTAGTGTATTCTCCGCGCATGCGGAGGTAGTTCCGAAAAGATCAGATTGAGTCTCCGCCAAAGCATGTATTCTCCGCGCATGCGGAGGTAGTTCCCACATCGGCGGCATGGAGTCCATTATTTTCGAGTATTCTCCGCGCATGCGGAGGTAGTTCCGATGCGGCGAATATCATTGGCGTTTCTCCATCGTATTCTCCGCGCATGCGGAGGTAGTTCCCCCAACCGGTCATACCGCGCCGGGTTGGTGAGGTATTCTCCGCGCATGCGGAGGTAGTTCCCAATTGACGGGTATCGTCAACCGACTTCGCCGGTATTCTCCGCGCATGCGGAGGTAGTTCCCATCATCGACAGGTGGCGCAAAGGCGTAGATTGTATTCTCCGCGCATGCGGAGGTAGTTCCGACGGGGAATAAAATCCTCAATACCCACAAAGGTATTCTCCGCGCATGCGGAGGTAGTTCCGATGTGGAGCGAGACCCAATACGGCTAGTACTGTATTCTCCGCGCATGCGGAGGTAGTTCCACGGTTGGCTGAGTTTAATTGCAGCCTATCCGGTATTCTCCGCGCATGCGGAGGTAGTTCCGATCTTGCTTACGATGGTCTGGCACTCTAGGTGTATTCTCCGCGCATGCGGAGGTAGTTCCCTGCTGAAGACATCGGTATTGGTATCGTCACCGTATTCTCCGCGCATGCGGAGGTAGTTCCGTATCCGGCGCACATCTTGAACCCCGGTGGGCGTATTCTCCGCGCATGCGGAGGTAGCTTC

>NZ_CP011542|1|1|40997-41824|CRT
TAATTCTCCGGAATCAAATTTCGCATAAA	AGCGAGACTTTGCTATTAATATATCAGGCTCACGTAGT
GTATTCTCCGCGCATGCGGAGGTAGTTCC	GAAAAGATCAGATTGAGTCTCCGCCAAAGCAT
GTATTCTCCGCGCATGCGGAGGTAGTTCC	CACATCGGCGGCATGGAGTCCATTATTTTCGA
GTATTCTCCGCGCATGCGGAGGTAGTTCC	GATGCGGCGAATATCATTGGCGTTTCTCCATC
GTATTCTCCGCGCATGCGGAGGTAGTTCC	CCCAACCGGTCATACCGCGCCGGGTTGGTGAG
GTATTCTCCGCGCATGCGGAGGTAGTTCC	CAATTGACGGGTATCGTCAACCGACTTCGCCG
GTATTCTCCGCGCATGCGGAGGTAGTTCC	CATCATCGACAGGTGGCGCAAAGGCGTAGATT
GTATTCTCCGCGCATGCGGAGGTAGTTCC	GACGGGGAATAAAATCCTCAATACCCACAAAG
GTATTCTCCGCGCATGCGGAGGTAGTTCC	GATGTGGAGCGAGACCCAATACGGCTAGTACT
GTATTCTCCGCGCATGCGGAGGTAGTTCC	ACGGTTGGCTGAGTTTAATTGCAGCCTATCCG
GTATTCTCCGCGCATGCGGAGGTAGTTCC	GATCTTGCTTACGATGGTCTGGCACTCTAGGT
GTATTCTCCGCGCATGCGGAGGTAGTTCC	CTGCTGAAGACATCGGTATTGGTATCGTCACC
GTATTCTCCGCGCATGCGGAGGTAGTTCC	GTATCCGGCGCACATCTTGAACCCCGGTGGGC
GTATTCTCCGCGCATGCGGAGGTAGCTTC

>NZ_CP011542|1|1|41064-41763|PILER-CR
GTATTCTCCGCGCATGCGGAGGTAGTTCC	GAAAAGATCAGATTGAGTCTCCGCCAAAGCAT
GTATTCTCCGCGCATGCGGAGGTAGTTCC	CACATCGGCGGCATGGAGTCCATTATTTTCGA
GTATTCTCCGCGCATGCGGAGGTAGTTCC	GATGCGGCGAATATCATTGGCGTTTCTCCATC
GTATTCTCCGCGCATGCGGAGGTAGTTCC	CCCAACCGGTCATACCGCGCCGGGTTGGTGAG
GTATTCTCCGCGCATGCGGAGGTAGTTCC	CAATTGACGGGTATCGTCAACCGACTTCGCCG
GTATTCTCCGCGCATGCGGAGGTAGTTCC	CATCATCGACAGGTGGCGCAAAGGCGTAGATT
GTATTCTCCGCGCATGCGGAGGTAGTTCC	GACGGGGAATAAAATCCTCAATACCCACAAAG
GTATTCTCCGCGCATGCGGAGGTAGTTCC	GATGTGGAGCGAGACCCAATACGGCTAGTACT
GTATTCTCCGCGCATGCGGAGGTAGTTCC	ACGGTTGGCTGAGTTTAATTGCAGCCTATCCG
GTATTCTCCGCGCATGCGGAGGTAGTTCC	GATCTTGCTTACGATGGTCTGGCACTCTAGGT
GTATTCTCCGCGCATGCGGAGGTAGTTCC	CTGCTGAAGACATCGGTATTGGTATCGTCACC
GTATTCTCCGCGCATGCGGAGGTAGTTCC

>NZ_CP011542|1|1|41064-41824|CRISPRCasFinder
GTATTCTCCGCGCATGCGGAGGTAGTTCC	GAAAAGATCAGATTGAGTCTCCGCCAAAGCAT
GTATTCTCCGCGCATGCGGAGGTAGTTCC	CACATCGGCGGCATGGAGTCCATTATTTTCGA
GTATTCTCCGCGCATGCGGAGGTAGTTCC	GATGCGGCGAATATCATTGGCGTTTCTCCATC
GTATTCTCCGCGCATGCGGAGGTAGTTCC	CCCAACCGGTCATACCGCGCCGGGTTGGTGAG
GTATTCTCCGCGCATGCGGAGGTAGTTCC	CAATTGACGGGTATCGTCAACCGACTTCGCCG
GTATTCTCCGCGCATGCGGAGGTAGTTCC	CATCATCGACAGGTGGCGCAAAGGCGTAGATT
GTATTCTCCGCGCATGCGGAGGTAGTTCC	GACGGGGAATAAAATCCTCAATACCCACAAAG
GTATTCTCCGCGCATGCGGAGGTAGTTCC	GATGTGGAGCGAGACCCAATACGGCTAGTACT
GTATTCTCCGCGCATGCGGAGGTAGTTCC	ACGGTTGGCTGAGTTTAATTGCAGCCTATCCG
GTATTCTCCGCGCATGCGGAGGTAGTTCC	GATCTTGCTTACGATGGTCTGGCACTCTAGGT
GTATTCTCCGCGCATGCGGAGGTAGTTCC	CTGCTGAAGACATCGGTATTGGTATCGTCACC
GTATTCTCCGCGCATGCGGAGGTAGTTCC	GTATCCGGCGCACATCTTGAACCCCGGTGGGC
GTATTCTCCGCGCATGCGGAGGTAGCTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011542.1\|WP_047260819.1\|34001_34592_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0096_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP011542.1\|WP_158408172.1\|34603_36001_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cls000721_cas8e_CAS-I-E	gnl\|CDD\|378189
NZ_CP011542.1\|WP_047260831.1\|47439_48876_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP011542.1\|WP_052844447.1\|37034_39710_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP011542.1\|WP_052844446.1\|30767_31475_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011542.1\|WP_047260825.1\|42076_42379_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011542.1\|WP_047263226.1\|32236_32935_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
NZ_CP011542.1\|WP_047260829.1\|45096_45366_-\|cell-division-protein-CrgA	unknown	unknown	gnl\|CDD\|178907
NZ_CP011542.1\|WP_047260830.1\|45409_47443_-\|Stk1-family-PASTA-domain-containing-Ser/Thr-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP011542.1\|WP_047260832.1\|48875_50327_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|223839
NZ_CP011542.1\|WP_047260823.1\|39717_40668_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP011542.1\|WP_047260828.1\|44224_44911_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235686
NZ_CP011542.1\|WP_047260817.1\|31553_32078_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223725
NZ_CP011542.1\|WP_047260827.1\|43796_44183_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011542.1\|WP_047260834.1\|51646_53071_-\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|223704
NZ_CP011542.1\|WP_047260816.1\|30392_30734_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011542.1\|WP_047260826.1\|42736_43381_+\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|366759
NZ_CP011542.1\|WP_047260821.1\|36336_37029_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|187858
NZ_CP011542.1\|WP_047260818.1\|32931_34002_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP011542.1\|WP_047260833.1\|50323_51646_-\|FtsW/RodA/SpoVE-family-cell-cycle-protein	unknown	unknown	gnl\|CDD\|223843

Protein	Function_ID	Function_description	E-value
NZ_CP011542.1\|WP_047260819.1\|34001_34592_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	0.000995904
NZ_CP011542.1\|WP_158408172.1\|34603_36001_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	7.67776e-12
NZ_CP011542.1\|WP_047260831.1\|47439_48876_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.00997e-107
NZ_CP011542.1\|WP_052844447.1\|37034_39710_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	2.51331e-61
NZ_CP011542.1\|WP_047260833.1\|50323_51646_-\|FtsW/RodA/SpoVE-family-cell-cycle-protein	gnl\|CDD\|223843	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning].	4.91062e-78
NZ_CP011542.1\|WP_047260828.1\|44224_44911_+\|hypothetical-protein	gnl\|CDD\|235686	PRK06061, PRK06061, amidase; Provisional.	0.00341441
NZ_CP011542.1\|WP_047263226.1\|32236_32935_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	3.34288e-23
NZ_CP011542.1\|WP_047260830.1\|45409_47443_-\|Stk1-family-PASTA-domain-containing-Ser/Thr-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	8.80697e-125
NZ_CP011542.1\|WP_047260832.1\|48875_50327_-\|penicillin-binding-protein-2	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	2.56909e-82
NZ_CP011542.1\|WP_047260823.1\|39717_40668_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.30828e-75
NZ_CP011542.1\|WP_047260817.1\|31553_32078_+\|peptidylprolyl-isomerase	gnl\|CDD\|223725	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones].	8.3709e-67
NZ_CP011542.1\|WP_047260834.1\|51646_53071_-\|serine/threonine-protein-phosphatase	gnl\|CDD\|223704	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms].	1.878e-72
NZ_CP011542.1\|WP_047260826.1\|42736_43381_+\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	2.5217e-20
NZ_CP011542.1\|WP_047260829.1\|45096_45366_-\|cell-division-protein-CrgA	gnl\|CDD\|178907	PRK00159, PRK00159, putative septation inhibitor protein; Reviewed.	1.22703e-43
NZ_CP011542.1\|WP_047260821.1\|36336_37029_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	1.97079e-24
NZ_CP011542.1\|WP_047260818.1\|32931_34002_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	8.13172e-77

>NZ_CP011542.1|WP_047260823.1|39717_40668_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MAYSEEAIAFSTLPVSHQIRLEDRLSFLYLEHCKVRQDRTGVIALQGDDPSDPDSLFFGLPSRVRIQLPVAGLSVLMLGPGTSISQPAATSCARAGTSIMYCGGGGVPMYSLATPLTASARWAIAQARLVSNEAKQRKAATILYRKQLGIEDMPGTSIANMRGLEGRLMRDTYKRFAAKYKIRDFKRDTAATDPVNESLNLSNAILYGCAASACSAIGLNPALGIIHRGDARSLLFDLADLYKPSLTIPLAFKHANREDYLAAVRRDMRKSLVKDRILAEMLSVLMEILEPHLPARDDDRLIGGRNNEVTGHTQYG
>NZ_CP011542.1|WP_052844447.1|37034_39710_+|CRISPR-associated-helicase/endonuclease-Cas3
MNFDLLNAVWAKQQGLAQPYPLVCHLLDTATVMSELVRAWLRPGLVDLICGELGADAERILMLVAGLHDLGKANPHFQYQPRQAGDQWNDIRRRLENLGLEFDSLVSEEFQNVGVLRRHENWSTYLLDLDDEERAADSWLVLALAGHHGKFHKATTCGYEYSTMLSVKDDLDSSQWADVHESLINAVEEAAGIAVDDLPVEVSPTVTVLISGLLVLADRLASQTSWIAEMQHYLERNPEILSSPSAWVDYRRERAREVIDENVGIYENWSSVDQALHDILDGFPPRFTQEEALRQGDGLWNVMAATGSGKTESALLRHAQRNERLVFLLPTQATTNAIMRRVQKAYRSTSNVAALAHGMAVNEDFYTRDVSVQNTECKDPNCDHRGLSPKKCEEHYRDHGGLYPTEFVKSGSSRLLAPVCVGTVDQALMASLPTKFNHLRLLALANAHVVIDEVHTLDQYQSELLSDLLVWLSATKTSVTFLTATMPRWQQEIFKKAYVKQCASVERFPSSSLWSFDGGDCVSKPIPTQPYELGIDIEKVPFDLLVAQHIAWVKNMRTQFPHARIGIICNTVDRAQEVARICVGELGEETVLLHSRMTTQHRRECVQHLESSIGKNGTADRVVVVGTQVIEASLDIDLDVLRTELCPAESLIQRAGRLWRRDDKRRVDRVPGLEQKALSVAVIDEPRSFQTLPYFSAQLGRVERWLSEKSSISFPDAAQDFINSSSMGLSELFAQLDEKADAEVLAEISKLALRRNTGLSTVVGFSDVLDEEAFFDAFSRITASKDVDELATRLVDSEQVPVIVQDSTGTIPGAWHGTVAELNKVRWNDSARIKEALSAAIQIPVSPKYASLLARKNPIDSGGSLLCRYFVVEEASDFYDPFLGLCSPEQE
>NZ_CP011542.1|WP_047260821.1|36336_37029_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MPFTTFLTKFPAHEALNRIAIEKKNREKQWNIDDPEFRHRAVMGLFPNFESDSARSQSNILFRYEFVPGQPPYFLVQSDVPVVAPDLVGHIESKQVEIGGYESGEAVLFRISLNTVTRREVENADGDKITKVVPVPLAPVNADSGLTPAEGFVVDRLRSALVNIEFLNHNRHVLGVSPRGRAAKASKVVQVDTFDAVGFVNDPQELENFLHRGVGRAKAYGCGLLTVKRV
>NZ_CP011542.1|WP_158408172.1|34603_36001_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MELGAILRLLTHIAALIVRKDKKLAKRNLKDPLPVSLLSEVFAELQKDLPLYGGERNFLQIPDITGVVSRGKNPTFKLSPTAPGENSQAYWNFSKKKPETLPKGEALLALLIFKIYSSAGNSKFENRKCQNGSPGIRFVGAGNTSTEVFVHANTLWESLLASVPKSWVEGEGLPAWADPTGEHSFVNGESHPLWRASWMSNSVCGFWEDGELTGVGIGGTPPEHFVPEIPSPENKDAYKAWCDQRNTEDPFYLYIRDSHSNALKVKRLDLSKDLTELAVEWARENTVAHLDSHFSKSVLPPNFKRGDSLVFIRHQIGGNASTPLIRESVVTQTSDTLWCLDQDPLIQRQLVSHAEFIFELKLTMLNPFRRMGKNDRCPTFDDLADLLDTAKSAFWRHITPVYEEIITTVKEKKDFDQKVVRRHAVDAAINALDAVVKPYLLQNPKRNFAVQNQTRRNLYAKLREK
>NZ_CP011542.1|WP_047260819.1|34001_34592_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSTFHYHRLVNHILNIAKNDGSRREISALRAGASLSTEYRAYPYVLHYLQDSSAMQRTVALRCAALIAEFPELCGVNPASSQGSSNEECKPLSKFGSWANHLAYATGESSQDLNGMVSSRLGYLHTQDVEEAITTVRRILNYAKSHGFQEQFDCINLIEVFWYWGKGHDDSSLSRRLQILRDYYGSQILSTPEGTE
>NZ_CP011542.1|WP_047260818.1|32931_34002_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSNHLTLHIVASVPYSNLNRDDTGTPKHVRRGGFQAALLSSQAIKKGIRTKYENSALVTSVRSGQLEDTVVQRALEINPSADEKALKKAAKKIIGNLTKNDEGGDTKNGKEPARSIWLSSEELEVAAAQILGNTDDEFLLDGKTGSLAIAAFGRMFAKAPQKGTEAALSVSPAVTSHAVNIATDYFSTVDDIKEANRESGATYLGVAQYTSGVFYRTVSIDKEQLHRSWTGFDSENAEESLALLVDAIIYGLPRGKQHSTAPFVQPALVFAEEQRYRSSYDFEAPVQADRTNGGFLEPTLDELNKQYEAARAFDPANFDGLEFVAGTATSLDDKFKNATKGSKDELVAAIVAWIKQ
>NZ_CP011542.1|WP_047263226.1|32236_32935_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MTDSVYFRLAGPFQSWAGPAITGNFVRTEPRPTHSGLVGLVAGACGFLRGEWPDWLNSLCFQVREDNRGVLIDDFQTINPRDTEMEFRSRLLLAMGKRPTNKLLTATPDGQGLTSLVQRTYLAGAEFIVQVASDEFGDILLDGLKNPRFSTYLGRKAFAPAFPFFLGSSSEDLLTKIPTVDSKLPDGQENKILRVFQLGPGCSTSPMRISVPVVSTRDSWLNDTKKLFLAPH
>NZ_CP011542.1|WP_047260817.1|31553_32078_+|peptidylprolyl-isomerase
MSFKTATAILHTNFGDIEIELFGNHAPKTVENFVTLAQGSAPYTEKNAAGSDEGPFYDGAIFHRVIKGFMIQGGDPTGTGMGGPGYRFEDEFHPELQFDRPFLLAMANAGPGTNGSQFFITVAPTPHLNMRHTIFGEVTNEDSQKVVEKISTTTTDYSDRPVEPVVIESIEIKD
>NZ_CP011542.1|WP_052844446.1|30767_31475_-|hypothetical-protein
MNLTALRTATTVAKKAYGSYADYRDRKAKQAYEALVDAANTYNVQGLIDESTQRFNTLSEKALKRIDDVKSEMHLDKATERATDKIAELGEKAHTKTAAFKKQQAKKAKAAKKQAKKLARKEKRGKKLLTFGLAAAIAAALGGAIYYLFGLGQGKKQYDTEPPKVDDYAAEESRLVYSTATPAEGAPERDEELLDALEEQLAKHSDAPLDDDAEAAAKAKEAEELELKLERKGKK
>NZ_CP011542.1|WP_047260816.1|30392_30734_-|hypothetical-protein
MFDQFRDGIVLTNEKTGETLVCNQRSFSYMLFGILTHYLRWNPKRAEEKVTEYMLRVDPPTFYTALLDAHEETYHTAMLLAHGNGFVSEVPDDYDDWYDAFVEKHSLAENTCD
>NZ_CP011542.1|WP_047260825.1|42076_42379_+|hypothetical-protein
MPANDLIQRVADEARPPAVLGRYPGLEIFLEVLLDDLVTSNAWLSLELKKPFLALWVNEPEFDDPDLDDPIEELSYNNVHAFAVMDPVVDLESLRNWKDS
>NZ_CP011542.1|WP_047260826.1|42736_43381_+|rhomboid-family-intramembrane-serine-protease
MNSSISHTIRNYYRQAPVTSALFIVMAALALITSVQSGSVENNLDYSSVGQEFVLYGPDLNVAGVVGSMFVHVGIGHFIVNSFFLLLLGREIEPVVGSWLYGAVFLTAGIGAAAAVYVMDFYAPTAGASGALYGLMALLVALAFRRRADLRAPIVFIGINVLFSLISPGVSLWGHLGGLVAGALMTPVVLSNVKIVQWVSIVVAFVIAVGILVS
>NZ_CP011542.1|WP_047260827.1|43796_44183_+|hypothetical-protein
MRKLRWIDPLVVVVIGFVGFCVLSALIFFDRHPGGVGEAALWLSGFAIVGVILVFVLSLIRSASNAKPLFIYLPGGAILVAFLLGYSLTLDGTGLHPESIRFTAIITAVIAVVTAIVMEVMVRPQQHK
>NZ_CP011542.1|WP_047260828.1|44224_44911_+|hypothetical-protein
MKISRPIFSTLLAAGLAVSLATPAHAAAPFVQWATTPGVEKCRVKVWEVRTPDYGAYRNHATRVYNDFKKATGLNDGHMYRWHMGIDSSAVQKTLALESHDPTKLSFAEESLRSVYLPAVHDQVYRSPEFRYLVGEDDYWNKDIPGKRMTLQRERVRVTAERESLTGTTLEAMARVREETTLADLAEADRIYADCQRMPGIPTIEQIVAGIVAFIKRYLPFLVTLLRL
>NZ_CP011542.1|WP_047260829.1|45096_45366_-|cell-division-protein-CrgA
MPKAKISHNSLPVSAGSSANRTPVKINSTGTPLWYKIIMFGLMLAGLAWLIVNYLAGLHIPFMMELGPWNYAIGFGLFIVGLLMTMGWR
>NZ_CP011542.1|WP_047260830.1|45409_47443_-|Stk1-family-PASTA-domain-containing-Ser/Thr-kinase
MSELIANRYQLGSVVGTGGMSEVYAANDTLLGREVAVKMLRSDLALDATFRERFRKEAQNAGRLNHPAIVAVYDTGETLRDGLSTPYIVMELVNGRNLRDIVRDNGPLTPDEAATTLIPVCEALQASHDAGIIHRDIKPANVMITNTGVVKIMDFGIARALNDATSAMTQTSAVIGTAQYLSPEQARGKPVDGRSDIYALGCVMYDIITGRPPFDGDTPFAVAYQHVQEDATPPSEFIPDLTPTAALNVDAVVLTAMAKHPGDRYQTAMEMAADLQRLERNAVTMAARQYVEPSIHDPAPSEADTTVVPAISAQEPPATAQHMPTTQFQPTAASSNNQPVQAVAQDPVEYDEPEPQPKRTGFKVLVGVAAVAALSIVGAFTYEYFTNDLRGLLGISKELVTVPDLANEHRDNAVAQLEQLGLKVEITEEASPTVEKDNVIRTNPTKGSSVQSGTLITLMVSTGKEFIEVPDLSGKTTAEAAVVLKRAGLVLDSLVKEEASDTVEEGKIIGQNPPPGLQASKGSKVTITVSTGEATERIPVVTGMQWSQAEGNLTSLGFNPKVEYIDSVQPEGTVVSVAGEGTQVPAKTEVQVQVSNGSMIQMPNITNMVIDDALTELHRAGWKGTRAQISEGAPIGTGSLINGGRIANQTPAAGSPVRKDGTVSVQLWEFDISSLGQ
>NZ_CP011542.1|WP_047260831.1|47439_48876_-|serine/threonine-protein-kinase
MSDQQLLQQLIGPDYVLNWVVGNGGMSTVWLADDVRNEREVAIKVLKPEFSDNEEFLSRFRNEALASENIVSENIVQTYDYRESVDDTGRTFCFIVMEFIRGESLADMIERKGTIPEESALDFLEQAAHGLASIHGMGLVHRDIKPGNLLITQNGRVKITDFGIAKAAASVPLTRTGMVVGTAQYVSPEQAQGKDVTPATDVYSLAVVGYEMLAGRRPFTGDSSVSVAIAHINQAPPPLPTSISAPTRELIGIALRKEPEHRYANGSELEKAISAARLGKRPPRPQGTPVVAAAPAASATAVTSSMPVTTLGPSQSVAKPPVSQAIPATRREPEKSGSSFALGLGLSVILLALVGAGVYLYSTGFFGAGMSESSSRETPTQETVTVTEEPTVEKTTRTPTPTPKPQPETTPSEQPPESMTATPSAEPPVETTEQSPTMVLPEPPTTIPSNPPLVTLPETQPDVGTFPSNELTNPGAGQ
>NZ_CP011542.1|WP_047260832.1|48875_50327_-|penicillin-binding-protein-2
MNKSIRNSMIFILVMVIILLVNLTIIQGFKEDEYAKNPLNRRAIIETKSQPRGQISADGIVLAESFEGEDGFYHRRYPNAPESFGAVEGYLSDIYGATGIEASHNDVLSGTANSAKLWWKRLISQDKVVGNVELTLLPSAQETAYSQLTNANYEGAVVAIKPSTGEILAMASSPSYNPALIADNTTAESAWADLNANPGKPLLNHATQETLPPGSTFKVITTAAALNNGYSPDSTVTGAPQITLPGTTATLENYGGQICAGSQQVNLLTAFQYSCNTAFVEMAIDTGADALRDAASGFGVTETYDLGVPMAQGRIGDIPDDPALGQTAIGQRDVAMSVLQNAVVAATVANGGVRMEPHLVSRVVANDLSVLEETQPQELDNSISPEIAGTLTELMRASERHTAGHAGQNIASKTGTAEHGEDSRNSNPHAWYIAFAPGEDIAVAVVVKNGGDLGQAATGGSVAAPIGRAVIAAIQSANAQGGQ
>NZ_CP011542.1|WP_047260833.1|50323_51646_-|FtsW/RodA/SpoVE-family-cell-cycle-protein
MSVWQTITARRTEFTLLIAATVIIAVTLLNLNVALGLAVNMELLKVIGGFIGVFTIAHIALCFLAPKADQIMLPVAALVNGLGLAMVYRLDNAKETAMASRQVIWTLLGIILMLLVLGFLRDHRNLTRYSYIMGLAGLILLALPLVWPTDPAIVADARIWISIGPLTLQPGEFSKILLLLFFAQLLINKRALFNVAGYRFLGLEFPRLRDLGPILGVWAVAILIMAGENDFGPALLLFSTVLGMLYLATGRVSWLLIGAVLVALGGTAVYQISDKIQSRFSNFLDPIGNYEVTGYQLSQALFGMSTGGVTGSGLGQGYPYLVPVAESDFILAAVGEELGFIGLAAVLMLFCVFITRGMHTAMLTKDSYGKLVASGLSLTLGIQIFVVTAGITALMPMTGLTTPFMSQGGSSLMANYILLGIILRISDSSRAGSIAQEARS
>NZ_CP011542.1|WP_047260834.1|51646_53071_-|serine/threonine-protein-phosphatase
MKLNYSIGSDRGLVRKNNEDSAYAGANLLALADGMGGHAAGEVASQIMISHIKELDADPGDNDMLALLASVADDANHAIARRIREKPETDGMGTTLTSLMFNGTEFGLCHVGDSRGYRLRDGQLEQITSDDTYVQSLVDRGELDPEDVSTHPQRSMILKAYTGRAVEPTLHMLDAKPGDRLMLCSDGLSDPVTFSTIQTILTEEATPEDCVNRLIELALRSGGPDNVTVLVADVVDDDYESSKLPTVPVTAGAINGETQEDPRPDTAAGRAAIAISAARESQAITPKLSNDTDSTPPGGVEKPRKKRKGLKRGLFFLIVLIALGGGLFFANNVIKERYFITTTPDSQILVIHQGLNSDILGGLWNTPYQEACLTANGNLTMISYGEKENCNRFKLVDLKESARASVATLPGGDYGEVLQQMQRLADEALPVCVTRESEAQTQKDSQQPSQSNEPTTTATDGNLNTPGVTCREVK

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Crispr_ID: NZ_CP011542_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011542_2

2739301-2739391

TypeI-E

Consensus_repeat	Method
CTCATTCCCCGCGCCAGCGGGGGTAGTCCC	CRISPRCasFinder

1 spacers

cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2

The CRISPR arrays of NZ_CP011542_2

>merge|NZ_CP011542|2|2739301-2739391|CRISPRCasFinder
CTCATTCCCCGCGCCAGCGGGGGTAGTCCCTTTTTCGCGGATTGTGTCGGCGAGAAAATTGCTCATTCCCCGCGCCAGCGGGGGTAGTCCC

>NZ_CP011542|2|2|2739301-2739391|CRISPRCasFinder
CTCATTCCCCGCGCCAGCGGGGGTAGTCCC	TTTTTCGCGGATTGTGTCGGCGAGAAAATTG
CTCATTCCCCGCGCCAGCGGGGGTAGTCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011542.1\|WP_047262752.1\|2745874_2746576_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|187886
NZ_CP011542.1\|WP_047262753.1\|2746575_2747238_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
NZ_CP011542.1\|WP_052844739.1\|2742455_2744102_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	pfam09481_cas8e_CAS-I-E	gnl\|CDD\|378189
NZ_CP011542.1\|WP_047262754.1\|2747243_2748218_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|187850
NZ_CP011542.1\|WP_047262740.1\|2723385_2723859_+\|thioredoxin-dependent-thiol-peroxidase	unknown	unknown	gnl\|CDD\|224146
NZ_CP011542.1\|WP_052844740.1\|2754509_2755271_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223200
NZ_CP011542.1\|WP_047262748.1\|2738930_2739143_-\|DUF4926-domain-containing-protein	unknown	unknown	gnl\|CDD\|379816
NZ_CP011542.1\|WP_047262747.1\|2737439_2738846_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274522
NZ_CP011542.1\|WP_047262745.1\|2735442_2735661_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011542.1\|WP_047262744.1\|2726111_2735219_-\|type-I-polyketide-synthase	unknown	unknown	gnl\|CDD\|227315
NZ_CP011542.1\|WP_047262742.1\|2724950_2725232_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011542.1\|WP_083987566.1\|2748214_2748565_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|378244
NZ_CP011542.1\|WP_047262750.1\|2744102_2744720_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NZ_CP011542.1\|WP_047262743.1\|2725355_2725622_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011542.1\|WP_047262741.1\|2724555_2724945_-\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|234610
NZ_CP011542.1\|WP_047262755.1\|2755299_2755845_-\|DUF1697-domain-containing-protein	unknown	unknown	gnl\|CDD\|226319
NZ_CP011542.1\|WP_047262746.1\|2735697_2737131_-\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|365919
NZ_CP011542.1\|WP_047262751.1\|2744735_2745872_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP011542.1\|WP_047262749.1\|2739518_2742368_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP011542.1\|WP_144414210.1\|2723862_2724519_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380058

Protein	Function_ID	Function_description	E-value
NZ_CP011542.1\|WP_047262752.1\|2745874_2746576_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.39277e-49
NZ_CP011542.1\|WP_047262753.1\|2746575_2747238_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	2.67533e-74
NZ_CP011542.1\|WP_047262747.1\|2737439_2738846_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|274522	TIGR03329, Phn_aa_oxid, putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.	6.94586e-65
NZ_CP011542.1\|WP_047262754.1\|2747243_2748218_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187850	cd09719, Cas1_I-E, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.48068e-124
NZ_CP011542.1\|WP_047262740.1\|2723385_2723859_+\|thioredoxin-dependent-thiol-peroxidase	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	6.49894e-80
NZ_CP011542.1\|WP_052844740.1\|2754509_2755271_+\|hypothetical-protein	gnl\|CDD\|223200	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair].	2.64587e-13
NZ_CP011542.1\|WP_047262750.1\|2744102_2744720_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	4.07887e-33
NZ_CP011542.1\|WP_052844739.1\|2742455_2744102_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	9.4541e-94
NZ_CP011542.1\|WP_047262744.1\|2726111_2735219_-\|type-I-polyketide-synthase	gnl\|CDD\|227315	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein].	0
NZ_CP011542.1\|WP_047262741.1\|2724555_2724945_-\|holo-ACP-synthase	gnl\|CDD\|234610	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional.	3.13228e-41
NZ_CP011542.1\|WP_083987566.1\|2748214_2748565_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	1.50746e-35
NZ_CP011542.1\|WP_047262748.1\|2738930_2739143_-\|DUF4926-domain-containing-protein	gnl\|CDD\|379816	pfam16277, DUF4926, Domain of unknown function (DUF4926). This family consists of uncharacterized proteins around 70 residues in length and is mainly found in various Caulobacter, Microcystis and Cyanothece species. The function of this family is unknown.	1.83337e-15
NZ_CP011542.1\|WP_047262755.1\|2755299_2755845_-\|DUF1697-domain-containing-protein	gnl\|CDD\|226319	COG3797, COG3797, Uncharacterized protein conserved in bacteria [Function unknown].	1.39947e-06
NZ_CP011542.1\|WP_047262746.1\|2735697_2737131_-\|aldehyde-dehydrogenase	gnl\|CDD\|365919	pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of dehydrogenases act on aldehyde substrates. Members use NADP as a cofactor. The family includes the following members: The prototypical members are the aldehyde dehydrogenases EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This family also includes omega crystallin, an eye lens protein from squid and octopus that has little aldehyde dehydrogenase activity.	2.5172e-168
NZ_CP011542.1\|WP_047262751.1\|2744735_2745872_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.09615e-138
NZ_CP011542.1\|WP_047262749.1\|2739518_2742368_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	6.86645e-87
NZ_CP011542.1\|WP_144414210.1\|2723862_2724519_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|380058	pfam17928, TetR_C_22, Tetracyclin repressor-like, C-terminal domain. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain. This entry represents the C-terminal domain present the TetR Transcriptional Repressor present in sco1712 proteins from Streptomyces coelicolo which act as a regulator of antibiotic production.	2.2774e-20

>NZ_CP011542.1|WP_047262748.1|2738930_2739143_-|DUF4926-domain-containing-protein
MPFNLFQTVRLTTDIPADESIDPPEPALSAGTTGTVVDLLDGTAYLVEFADDQGRTIALPALTEDQITRA
>NZ_CP011542.1|WP_047262747.1|2737439_2738846_+|FAD-dependent-oxidoreductase
MSTAYGSTPTHDPALLTEALKDANTTPFWLDNPNRPEPRPALTEDINADLLIVGGGFCGLWTAIIAKERHPEWDVVVVEKRRIAWAASGRNGGFCESNLTHGDDNGKLHFPNELATIHKLADENFAELHRTITQYNIDAEWENTGVMVVATENHQVPWITNSNAQQLNPTDNHGHGNSPVYRAALFKKDGYSFVHPAKLAWGLAEAAEKLGVTIYENTEITDLKHNQTGATAHTPEGKITATKVALATNAFPSLLRHLRLFTLPVYDYAIVTEPLTNNQLKEIGWTQRNGITDSGKEFHYYRKTADNRILFGGWDAIYHRGRKITPRYDQRPETFRLLVDHLYTTFPSLKGTKITHAWGGVIDMSTQLVAFHGTTRNKTVAYSAGFTGLGLGATRFGAETMLDLLEGKETERTRLKMARRLPIPIPPEPIAYPLVQIMRRAVNKSDQNGGKDGLLLKLMGLFKIGFDS
>NZ_CP011542.1|WP_047262746.1|2735697_2737131_-|aldehyde-dehydrogenase
MKTQLYIGGEFVDASDGGVTPIVSPVTGDVIAEVAVPTSADLDRAVSVAREAQAQWRQVGVWQRAAVCRKVGELIDARRDELAKLLTLEQGKPITESYADVDETAELFRLHAEDAVRLHGETLPANDPHKRMWTFYQPVGTWAIVIPWNFPVLMFSEFAAPGLATGNALVVKPPTHTSLTLLTLVDVLNEAGVPPGLINILPGEGDFGAQLVSHTGIDAIGFIGSSATAEKIVQTAGLKRAIIEASGNGPVVVLDDADLDAAAKAVVQGAYYNAGQVCCATGRVLVHQAVHEDFVAAVKAAATEAVLGDPFDEKTTLGPMNNQRTAEKVDRHLEEAKERGFDIVVGGNRSADYPTDLYYEFTVVDNVAPDSLLSVEETFGPVVPIIVGADDDELLRLANDDALGLQGAVFTKDMTRAYRFVENMRTGQVIVNDSNGFWDINMPFGGVGGTRTGWGRIGGKHTLLDMSDLRTGVIHLD
>NZ_CP011542.1|WP_047262745.1|2735442_2735661_-|hypothetical-protein
MSISRNFDEYLAAHGIVQSAEVVPDNPCQVFEPSTQWYVPDVDAPNRGEADGVLDSDEWESAERIISQILGD
>NZ_CP011542.1|WP_047262744.1|2726111_2735219_-|type-I-polyketide-synthase
MTDTSHKFGLQPGTDRLIDRFATQPFALAFSGQGFEWLPTLQAAVAQGARKTVAPLVEQAAALIAPVADEIAGTRPYGFDPLNWADHGNIAIDLSQAAVSVPGIFVAQLAVLDQLEAQGLDVESAIASIGHSQGLLGVIACQDLSRAAEVLAIAQLVGAAITRQARITGLVATGEDMPMVAISGVSRQQVEEAIAVACGVEASQSRPVIGLRNSRDTFVIVGRPADNRKVVDVVNAWARKDAKAIEEKQRGGAAFAPTVTPLAVQVGFHHPLMADGVEQVVAWAKKAELDVNLAREVAQSTMVDPVDWLAQVTEVVDAGARWILDVGPAAGVGLLTNSILVGRGALSLSVSGLSGQSQLFDAGQAPELPRNFKEFAPRLLKTANGNRVSTKFTELTGRSPMLLAGMTPTTVDPEIVAAAANAGHWAELAGGGQVTPEILEAHIEKLTSLLLPGVNAQFNSMFLDPYLWKMQIGGKRLVPKARANGAPIDGIVVTAGIPEHDEAVALVHELRDGGFPWVAFKPGAVRQIAKVLAVAADVPDVPVIVQVEGGKAGGHHSWEDLDDLLINTYEDIRAHDNVVLCVGGGIGTPERAAEYLTGDWATKYDLPPMPVDGILIGTAAMATKEAKTSESVKKMLVETTGIEDWVGAGKAAGGMASGRSQLGADIHEIDNSFARAGRLLDEVAGDADAVAARRDEIIAAIAKTAKPYFGHLPAMTYTDWLERYLELSGPYKGEWTDISWFNRFAEMVARCEARLIAQDHGRFAPQVQVSVEDDPAAVVEKLVAAYPEAATDTLHPADVAWFMQLCRTPGKPVNFVPVIDQDVRRWWRSDSLWQSHDERYDADQVAIIPGIAAVAGITKANEPVAELLERFNAATIAQLENDNAEVIEEPLCPAKRVINASGTYWAGRHQTSLIARLSDIDAWEFGEVNGRKQASHGPTGAILIPEDDEHVVLTVPLAGSTAFGTTADLDIRISIPKDAPISAVPQVTQADAEAAMTSLATIAAGGQIGENASGVATWRTTLSAEDIADYVNVTAGHLPSSIVPAGTAPDVLVGRSWPAIFAAVQSAVIPGTDSASVVEGMLSLVHLEHHITLIGDLPNPKPGEVIDIEVTAQAEDVSDTEIGRIILIRAEITAHGNRIAKLSERMAVRGRRGKATARTNTSVLPTHEHAPRSFRAYAKVTAPESMHPFAVVSGDRNPIHVSDTAAALAGLNNGVIVHGMWTSAIAELLAAAGYSDESVTTAPAKVAEYTATMLAPILPGAEIEFLVERTGIDTRPGRSEVREVTATVNGQMVLTATATMVAPETFYAFPGQGIQSQGMGMESRSKSAAAREVWDRADKHTRSKLGFSVLEIVQNNPTEVVVAGETFTHPKGVLFLTQFTQVAMACLGVAQIAEMREANVLNQRAFFAGHSVGEYNALAAYADVLSLENVVEIVYQRGLTMHRLVERDAEGNSNYGLAALRPHKMGLTAENVFDFVADIANKSGEFLEIVNYNLAGMQYAVAGTFKGLKALEAACDEAAPGQRAFILIPGIDVPFHSSHLLGGVDAFRDTLDDLLPDEVELDILVGRYIPNLVARPFELTREFVESILEVVDAPIIKDILADFDVEVRNPKRLARTLLVELLAWQFASPVRWIETQDLLLRSAENGGLGAERFVEVGVGSAPTLANMMAQTTALPQYAGVEVEILNVERDRSVVFASDEIVREVPEPEQPESAELSNQAPAQPASTAETTPVADTAVPVEAPAAAPAAAGTPSDISFGPAEATAMLIALWTKVRPDQMGASDSIETLVEGVSSRRNQLLLDLGVEFGLGAIDGAADAELNDLYATVSRMAKGYTAFGPVLSEAVGDALRRLTGPTGKRANYISERVTGAWGLGQGWADHVVAEVVLCAREGASLRGGDLATLSPAAPGNAAELDQLIDAAVQAVAAKQGVAVAMPGAGGGAGGGVVDSAALGEFAEQVTGKAGVLAAAARTILSNLGLDAEPSKTLSLDDADADAALFELVSRELGSDWPRQIKPRFDENLAVLIDDRWASAREDITRVALGEITSKSIDVTGAGEQVARQAEFFGLSELAAQARDNRTLEFAEDVAVVTGASPNSIAASVVKRLLAGGATVIATTSSLSHDRLGYYKKLYSESARGTAALWVVPANLSSFSDLDDLIAWVGSAQTATVNGASKLVKPALKPTLLFPFAAPRVSGSLADAGPAAEMQMRLLLWSVERLIAGLSTIGTDTHVGRRLHVVLPGSPNRGRFGGDGAYGESKAALDALVTRWNAEPAWQPHTSLVHMLIGWVRGTGLMGGNDPLVEAVEAAGVTTYSTEEMADLLVAQIATDVRATAAQSPVTVDVTGGLGEIDIDLPALARQLERGSAAPEAEEPNTIEALPTPYRPVAETTPDFANQVRQDLDDMVVIVGAGEIGPWGSSRTRFDAELTGSLTAAGVTELAWSMGLIHWDTDPTPGWYDQNDDPVAETEIFDRFHDEVLARVGVRRYHDDFGMVDNLAPELTQVYLDHDLTFNVADKAAARTFVESDPELTTATFDEDSGEWVITRKAGSVVRVPRRMAMSRFVGGQIPEGFDPTVYGIPADMIDNLDRVALWNLVATIDAFLASGFSPAELLASVHPARVSSTQGTGMGGMQSMRSLYLDGIMAEPRQNDILQEALPNVVAAHVMQSYVSGYGQMIHPVAACATAAVSVEEGFDKIKLGKSDFVVAGGFDDLSIEGITGFGDMAATADSGDMVAKGIEERFFSRANDRRRGGFIESAGGGTILLAKGSFAKETGLPVLGVIGFVESFADGAHTSIPAPGLGALGAARGGTESRLVKQLAEVGVSADDITIISKHDTSTTANDPNESDLHERIAAAIGRSSGNPLYVISQKTLTGHAKGGAAAFQIIGLTQVLRSGMVPANMSLDCVDPVLAKHEHLVWLRRPLDLSAQAPKAGLVTSLGFGHVSALLAIVHPAAFKEAIRAADGAAAAAEWADKAAEREAAGLRTIVSGMHGGKPLFERPVDRNLGATGDAAKEREAAILLSDNVRLVDGVLTVVK
>NZ_CP011542.1|WP_047262743.1|2725355_2725622_-|hypothetical-protein
MTQPFKLGHNLWEIDFEAFDPAALAALNPRYEFSPNVDLWFITYEGCEFVFVNDLDYEPCVRFFDWSHHELAQQLVNMLTKPTAGNQQ
>NZ_CP011542.1|WP_047262742.1|2724950_2725232_-|hypothetical-protein
MQPFNLGHNLWEIEFEAFDPAALAALNPRFGVAPNAELWFITYGGCEFSLVDDIYCGPSVLYFDRSHHELAQQLVNVLAKPVAGNPNTTVVEE
>NZ_CP011542.1|WP_047262741.1|2724555_2724945_-|holo-ACP-synthase
MSPTPFVGIDLVHIPSFAEQLAQPGSRFESVFSPLELRIAATKPRRAEHLAGRWAAKEAFIKAWGQSRYGTPPVIGPEGVNWAEIQVTPDRWGRTQIVLTGKLAGHVVSDAITVSISHDGDYATAICVL
>NZ_CP011542.1|WP_144414210.1|2723862_2724519_+|TetR/AcrR-family-transcriptional-regulator
MTDMQAESPEAEVILQPRRRPAQKRSRERYSRILTAARTVLVDVGFESFTFDEVAKRAEVPIGTLYQFFANKYVLICELDREDTAATVAELTHFAQQVPALQWPDILDEMIDHFADMWRADPSRRAVWHAVQSTPATRTTAAATEQPVLALLAGVLEPLSPHATESERRNMAGLLVHTLVSLLNYAVGINDASEEVFAGTVGEIKRMLVAYLFAVATD
>NZ_CP011542.1|WP_047262740.1|2723385_2723859_+|thioredoxin-dependent-thiol-peroxidase
MTENLRLEIGTQAPDFTLTNDEGGTTSLKDYRGSKVLVYFYPRANTPGCTKEACDFRDSLSQLNDLGIAVVGISPDSPEKLRQFREDHELNFPLLSDPDKEVMKAYGAFGEKKNYGKIVEGVIRSTFLIDTEGNIANAMYNVRATGHVARVIKELNA
>NZ_CP011542.1|WP_047262749.1|2739518_2742368_+|CRISPR-associated-helicase/endonuclease-Cas3
MPNAPFIQDPPSVEEHKNAWAKYDRHSGGWLPLYRHLDDIACVAAALWDTWLTPNSKALICDSFDGDENFGRQVAVFLASGHDIGKCSSAFAIKVPECASRMTAAGAVFLTLDKADKKSMPHGTVSALSLIDWLESQVQPEDCFAIESLSTIVGGHHGVFPSKVNLLNCFPYTREKETHWHKDRLLLWERAAKTAGFSQQDLVRLTKKSLSQTAQMTLCGFIIMSDWIASNTQWFPLDDYRSSKQRAEIAFASLHFPKPWLASPPIDDLELFQNSFSLPEGSAPRPVQKAAMELARKADSACLILIEAPTGEGKTEAAFTAAEILASRFNLSGITIALPTCATSDAMFPRMLRWLANRLPSDKEASTVLCHGKAQYNEEYTGLFSKTSNDFSPIYGEEAENKASLIPHWWFSGRKTSALSDFTIGTIDQVLFGALRSRHLALRHLGFSGKVVILDEIHCADSYMSVYLDRILIWLGAMGTPVIALSATLDPKRRGELLTAYRTGVCKNTRVPYKKHAAKSDLNAAYEQRDYPLISVSNSSEVTFSNPSPSGRSTQFNVKFLGSETSTLIEKVLQLSEIGGCVGVVCNTVSRAQQVYEEVKQKVTDDVEIVLLHSRFSAYDRRRIEKSIVERLGPNANNRPSKLVVVSTQVIEQSMDIDFDCMISDIAPMDLIFQRAGRLHRHHRPQNQRPSQHQLPTLYVSGCDAPTEEEPPFVEKGSSFVYGQASLLRSLRVLQLHDRTIKSPDDVANFVRLSYSPSLTPPGSWISVWEEANREAEEDNKLRKIKAKQYLLPVPAIKEPVWEIDTLKPVEAREEIKGHAQVRDIEDSLDVILIEKTTDHFQIPSWVPKYGNTKLEFHFPIPEEESKILAMCTVPLPQWVLKGKIGEALLDALELCVFSEEEVFNISKNKWLKEQLFLPLTPSHEATVAGLHFSYSTELGMKVTSANPE
>NZ_CP011542.1|WP_052844739.1|2742455_2744102_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MTKSYNLLTENWIPVRFTDDTIENIGIKSFFEKAETISDIACDLPTMRFAIFRVLFAIFCRSIDEDMEEESASLWKELWDSDSLPIEEINTYLEEHHNRFDLLHPEYPFLQTPSLHTKSGEWKELDIIVADSPGEGALYSQTDPRHPISFAEGARWLIHATQFDYSGIKSGAVGDDRVKGGKGYPMGIGWCGWMGCTIIRGMNMKETLLLNYVPRSNDSSDYGETSDLPIWELPTPQAHKQDVLIATGQLSLIAWPQRRIRLRNNGSRFDGVLVCNGDPVDYLSQLSHETMTPWRFSKPQSSKAKQDIYMPRSLDPGVALWRGLQSLLPYDNRSATVKSVSTPTTTVPAFLPPKTIEVVAQRIGTVLPRNFILNVEVSSMLYGTQSASFSEVVHDKLSFPGLLAVTSEEALRSRALTAVDRAVNSINVLGDFAANVARSETDSKEAPDNARNRAKESAFSLVDPFFRSWLQKLSTDATKAEDQLAEWTAWLYHTLRNEAQQISHNASPAAWHGRKKDDFNFTLGQSEAWFFSRLRKALPIRTERKETE
>NZ_CP011542.1|WP_047262750.1|2744102_2744720_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MAASKTAQIRAVTTRIISQLQDGYLAGTPNAKANIAAFRRQANRHLGESPETWAVFSESLPADLVGKGENPSPAEKAIFTALTLYAVHQQSKTEPMHVPSQPPESGTFTAENGLGTAVRKMATITDTELFDSSLYRRFVSIVQSQTFEATVHHLRSMIQLLRTESIPLDYGLLAKDLYRFQFPDSKKSVQLSWARQLYRTESPTE
>NZ_CP011542.1|WP_047262751.1|2744735_2745872_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MFIDFHAIQAIGPANINRDDSGSPKSTVFGGTRRTRVSSQAWKRAIRKDFEEHLDAEMLGERTLFAVDRIAKAITEEAPEFAEQSQKMAEEVLKAGGIKIQAAKKKKDDPENLPEKLITGYLLFLARAQIKALAHLAVTAYQEADGKIDKKSAKAAINDKHSIDVALFGRMIADSHDLSSDACCQVAHAVSVHPMEIEFDYFTAVDDNAPEDNAGAGMIGSIEFNASTLYRYATINVDALVTTLGSVDAAKKAIGAFTKAFALSMPTGKQTTFANRTRPEFFAISIRTDQPVNFVDAFEDAILVSKGRTSEATRRLAEYAIQSDKIYGSDSTNYYLATGTAATEELQLTLANFGENCTLPEIVSHAEEVARKATTEIE
>NZ_CP011542.1|WP_047262752.1|2745874_2746576_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSTLLLQLSGPLQAWGDSSRFAYRTTRREPTKSGVIGLLAAAQGRERTADLADLVGLRFGVRIDQVGRVIQDFQTEIDWRTGKSKPLTHRQYLADAKFVAALEGPSTVLDGIVESIKSPVFPLFLGRRSCPPSSPVFLSLQDGDLETELQSWPWIASDWYKRKQPKTIQLAISRDCKTGENPDEMIRDLPVCFEQRNRRHELRPVIHSFTQPFTNPLGNEDDPHNPYSLLGGV
>NZ_CP011542.1|WP_047262753.1|2746575_2747238_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MPYLSTMELNGQRRQTAKFLANPRTMHAAIESCFPSTPDEGNPRVLWRLERHGSKVTLWLVSERQPSFEHIQEQAGWSAQPTWETRNYDLLLDRLMTGQYYQFRLTANPVICTVCEDGKKRHVGLVREPDQINWLLARQENLGISVQSDPDSVPTFSVSRSKRVRFPHKNKQTYVTIDQCQFDGVLTVTDPNALRTALIEGIGRSKAYGSGLLTLATYKG
>NZ_CP011542.1|WP_047262754.1|2747243_2748218_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MGKSIPGMAPSKPSSLVRADDRISFLYLEHCTIGKSSSALTATDENGVIHIPSATLSVLMFGPGTRVTHQAMSTIADSGMSVIWVGEEGVRYYAHGRPIGRNTKLLEAQARIVSNTRLRLQAARIMYEMRFAGEDTSSLTMQQLRGREGARVRKIYAEMSKTHKVEWNKRQYDPDDFLASDPINLALSAAHTSLYGLVHATIVALGCSPGLGIIHTGHDRSFVYDIADLYKADVTIPIAFESVVAMRDLDFPLDQLASYTRRCCRNAFKQARLTETIVRDIKTLLLPDAEEAEDELYFEAEVIALWDERGKKVVGGKNYETEMP
>NZ_CP011542.1|WP_083987566.1|2748214_2748565_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MITVVLTACPESLRGHLTRWLSEVSAGVFVGKVNPRIRDKLWGLIVAECKNGRAIMTFTTRDREQGYDFRLHNHDWETVDCEGLVLIKRPSPNHSKPNSKPKPGWSRAGRRKRFHR
>NZ_CP011542.1|WP_052844740.1|2754509_2755271_+|hypothetical-protein
MPDTSHYQPHMSVVMTDHPAWLAQKGGRLRMWRRVDGCIQEATVTDAGRWVAGSSSDQDPQIIASISESDQESSIVVRRWATTDLWEAIAAGIVRQVIRADQARKLYSVAAQRLGDEYTPSFRGFPSAQQVLLRPVQDFVDCGLAFQVPKLKAAAEWYVAAPAAPLELDVLANQLGEIPGIGPWSVGVIIADISNDFAWYPYDDLAVRRGAQRLWPDYGFPDKPGAFARRWAEFAGKNLAEFTAVALSGIASL
>NZ_CP011542.1|WP_047262755.1|2755299_2755845_-|DUF1697-domain-containing-protein
MLGTAGVNYVVFFRNMNLGHAGSPNRAQLEAAFRDAGCEAATSFQTNGTVIIATATPDKHTQQATETIAHTCGYDDAYFIIPIDRLKKIVINDGYAHHTNDDTYRETVTFFRSNTEPTWELPWTNPKNDVTIFAIDDGIALGTIRKRNNTAGSPTREIETATSGVATTRTRGTIIRLLKKI

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Crispr_ID: NZ_CP011542_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011542_3

2748620-2754128

TypeI-E

I-C,I-E,II-B

Consensus_repeat	Method
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CRISPRCasFinder
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CRT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	PILER-CR
GTTTTCCCCGCGTGAGCGGGGATGTTCC	PILER-CR
GTTTTCCCCGCGTGAGCGGGGATGTTCC	PILER-CR

90 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP011542_3

>merge|NZ_CP011542|3|2748620-2754128|CRISPRCasFinder,CRT,PILER-CR,PILER-CR,PILER-CR
GTTTTCCCCGCGTGAGCGGGGATGTTCCCCACCGAAGAAAACAAATCAGCCCTTGTGGACAGTTTTCCCCGCGTGAGCGGGGATGTTCCCGTACAATAATCGTCATGAAACACACCGACTGGGTTTTCCCCGCGTGAGCGGGGATGTTCCCCTCCGCCCGCAATTCCTTTTGCCTCCGCAAAGGTTTTCCCCGCGTGAGCGGGGATGTTCCCAAACATTACGATTTGTCGGAAGCGCTACGTTTGTTTTCCCCGCGTGAGCGGGGATGTTCCGTCGGTGTTGGCGGCGTACAACGTGGGGGGTCAGTTTTCCCCGCGTGAGCGGGGATGTTCCCCCTACAAGCGCCGAAAGAAATACACGGCATTAGTTTTCCCCGCGTGAGCGGGGATGTTCCCCCCTGCTTAATGCCATCGAACGCAGGTTTGAGGTTTTCCCCGCGTGAGCGGGGATGTTCCTGCCCCAACACCTTAGAAGCCACCTCAATACCCGTTTTCCCCGCGTGAGCGGGGATGTTCCGCGGTAGATACAGGTGATAATCCAAAGGACAATGTTTTCCCCGCGTGAGCGGGGATGTTCCGTGATCCTCATTGGTTGTGAGACCAAACCGTTTGTTTTCCCCGCGTGAGCGGGGATGTTCCGTCCCCTAGAACACCCCATGTGGGAAGCTCAAAGTTTTCCCCGCGTGAGCGGGGATGTTCCTTATAAGCCGCCACAATGACACTTCGCTGATTAGTTTTCCCCGCGTGAGCGGGGATGTTCCGTTGAAAATGTGGTGTATAACCCTGATACTCAGGTTTTCCCCGCGTGAGCGGGGATGTTCCGCCGACACAAAGATACTTCACTGATTACGCTGCGTTTTCCCCGCGTGAGCGGGGATGTTCCTGCATAGCCACTCTCAGATGGGGTTTAGCTCTTGTTTTCCCCGCGTGAGCGGGGATGTTCCTATCTATCACCAACCCCACAATGGAAGGACAAGGTTTTCCCCGCGTGAGCGGGGATGTTCCTGACACTATCGAAAATTTGGACGAACGCAGAACGTTTTCCCCGCGTGAGCGGGGATGTTCCAGCGTGGAGAACGCGATTAGCCAGAATCACGCTAGTTTTCCCCGCGTGAGCGGGGATGTTCCGCCCGCCTGCTCTCGCAGGTGCTCCAACTGCACGTTTTCCCCGCGTGAGCGGGGATGTTCCGGGTGACTGAAACCTTGTCTTTCGTAATCCAGTGTTTTCCCCGCGTGAGCGGGGATGTTCCGTGGGATCCGGGTTCGGGTCGTGGGGTGCCAGGGTTTTCCCCGCGTGAGCGGGGATGTTCCCGTCAACAGGGTCGCCTGCTGAGATGGAGATTGGTTTTCCCCGCGTGAGCGGGGATGTTCCTACGGGTGCCGTAACGGTGCGTACCGCATAAAAGTTTTCCCCGCGTGAGCGGGGATGTTCCGCTTGCATGAGCTGCTGAAACCAGCAACCCCGCGTTTTCCCCGCGTGAGCGGGGATGTTCCGATCGGTTGGTTGCAGCGTTCGCTGAATGCTATGTTTTCCCCGCGTGAGCGGGGATGTTCCGTGCCGAACCATGCGGGGGAAAACGTTCGAAATGTTTTCCCCGCGTGAGCGGGGATGTTCCGATCGGTTGGTTGCAGCGTTCGCTGAATGCTATGTTTTCCCCGCGTGAGCGGGGATGTTCCGTGCCGAACCATGCGGGGGAAAACGTTCGAAATGTTTTCCCCGCGTGAGCGGGGATGTTCCGATCGGTTGGTTGCAGCGTTCGCTGAATGCTATGTTTTCCCCGCGTGAGCGGGGATGTTCCGTGCCGAACCATGCGGGGGAAAACGTTCGAAATGTTTTCCCCGCGTGAGCGGGGATGTTCCGCGACCGGAGCTGGTCAAGTGTCCCCTGATAGGGTTTTCCCCGCGTGAGCGGGGATGTTCCCTAACCCGGCGCAAGAATGAGATCATAGCGGAGGTTTTCCCCGCGTGAGCGGGGATGTTCCTGGAATTATCCGAGTTCGATTCAATTCAAGGAAGTTTTCCCCGCGTGAGCGGGGATGTTCCCCGCAACCTACACTTTTGAGGTAGATGGTGAGTGTTTTCCCCGCGTGAGCGGGGATGTTCCCGGCTAGCGAACGGCTTCCCGAATCAGTCTATGGTTTTCCCCGCGTGAGCGGGGATGTTCCTTAATTTATAAGGGTCGCCTTATAGATAGTGCGGTTTTCCCCGCGTGAGCGGGGATGTTCCTTCCCGTAGTAATTTACCGTGATGGATATTGGGGTTTTCCCCGCGTGAGCGGGGATGTTCCGGGCCTACCGAAGGGCCTACCGTTTTCCCCGCGTGAGCGGGGATGTTCCACCTCCGATCAGGTCACACTGTCCGAGGGGTGGGTTTTCCCCGCGTGAGCGGGGATGTTCCACGGTATTTTGATTGCTCGCCACGTATCTGCGCTGTTTTCCCCGCGTGAGCGGGGATGTTCCTCCGAGTGCAACCCGCAGCTTTTCGATTGCGGGGTTTTCCCCGCGTGAGCGGGGATGTTCCGTAAACGCGCCAAAAACCGTGTGCTTATCAAAAGTTTTCCCCGCGTGAGCGGGGATGTTCCTTCGGACTTGCCAACGACCACATGCCAAAAGCAGTTTTCCCCGCGTGAGCGGGGATGTTCCTTCCTCACGGAAAGTTTTTGCAGCTTCCAGCATGTTTTCCCCGCGTGAGCGGGGATGTTCCACACCCCGCTACCAGCGGGGTTGACAACTTTTTGTTTTCCCCGCGTGAGCGGGGATGTTCCCTACGATATGGTAGTTGCTAATACTCACGGCTAGTTTTCCCCGCGTGAGCGGGGATGTTCCTTAGATTATCTAGGGTCATTACAGCTCCTAAAGGTTTTCCCCGCGTGAGCGGGGATGTTCCTTAGATTATCTAGGGTCATTACAGCTCCTAAAGGTTTTCCCCGCGTGAGCGGGGATGTTCCTAGTCATGTAAGGCAATCAATCCAAAAGGTAAGGTTTTCCCCGCGTGAGCGGGGATGTTCCTCAATCAAAACCCTCTCAAACTCACTCAAAATAGTTTTCCCCGCGTGAGCGGGGATGTTCCGGCTGCAAAAACCAAAAACCACCCTAGGGTATAGTTTTCCCCGCGTGAGCGGGGATGTTCCCATAGGTGAAGATATTTCATGGTCTTGTAGACCGTTTTCCCCGCGTGAGCGGGGATGTTCCCAAATACCTCAACGCAACCCCAATCGAACGGAAGTTTTCCCCGCGTGAGCGGGGATGTTCCTTCCATCCGTTCAAAAAACGAATCTTCGCATTCGTTTTCCCCGCGTGAGCGGGGATGTTCCCATGTGAAATATCTGTGCGACGAATACCTAGGGGTTTTCCCCGCGTGAGCGGGGATGTTCCCAATTCGGACACTTTGTGTTCCCAGTCAGCTTTGTTTTCCCCGCGTGAGCGGGGATGTTCCTTACCACCGACAACACCACAAAAACAGCAAACAGTTTTCCCCGCGTGAGCGGGGATGTTCCGCGGTGTGATTCTGTGTGAGTCCGAGGGTGGTCGTTTTCCCCGCGTGAGCGGGGATGTTCCTTCTTTTCGCACTTCGTCAAGCATCGCCATTACGTTTTCCCCGCGTGAGCGGGGATGTTCCGAAAAACTAATTTCGCAATCGGCAAAAACACTAGTTTTCCCCGCGTGAGCGGGGATGTTCCTTGGAGTATCGCCCCCAATTTCCTCACGGAAAGGTTTTCCCCGCGTGAGCGGGGATGTTCCGGGGTGGCGACTTCCCCTAGTTGACAAAACATGGTTTTCCCCGCGTGAGCGGGGATGTTCCGTTTTCCCATGTAGATGGTACTATCTGGAACCAAGTTTTCCCCGCGTGAGCGGGGATGTTCCGGGCGATTTGAAGGCGGCGCAAACGGCGTTGAAGTTTTCCCCGCGTGAGCGGGGATGTTCCCGGCATGGGGGAACCCCGAGTGTTTCACACCATGTTTTCCCCGCGTGAGCGGGGATGTTCCGCATCGAACCTTTATCCGCGTGGGTGCAGGAACGTTTTCCCCGCGTGAGCGGGGATGTTCCGGCTGCAAAAACCAAAAACCACCCTAGGGTATAGTTTTCCCCGCGTGAGCGGGGATGTTCCGATGAGTATCACGGTAGGGATATGGACGGCTACGTTTTCCCCGCGTGAGCGGGGATGTTCCTGCGACCACAAAACCCCACCACAACCACCAAAAGTTTTCCCCGCGTGAGCGGGGATGTTCCGTCCAACACCTCGCCGAACGCATCTACCAACTAGTTTTCCCCGCGTGAGCGGGGATGTTCCTCCGTCTGTGATTGCGTGCCAGATTGTTTTATCGTTTTCCCCGCGTGAGCGGGGATGTTCCGCCGTTTTATATAAACCTTGTTTGCTAAAGGAAGTTTTCCCCGCGTGAGCGGGGATGTTCCGTGGAGTTGGGCTGCGAGAGACAAAGAGGTTAGGTTTTCCCCGCGTGAGCGGGGATGTTCCGCACGGAGTCGAGCGGAACCCATGGTGAACCCGGTTTTCCCCGCGTGAGCGGGGATGTTCCCGTGAATGCGCCGAGTTCAGGAGGCTGGGGCAAGTTTTCCCCGCGTGAGCGGGGATGTTCCTGTGTGGTGTTGTTGGTGGAATTGTTCGGTGTTGTTTTCCCCGCGTGAGCGGGGATGTTCCGGAGACTTTCGAGTCGCAGCTTACTCGGATCATGTTTTCCCCGCGTGAGCGGGGATGTTCCGGGAAACCTTACTGACACGTTATTTGAAAACTCGTTTTCCCCGCGTGAGCGGGGATGTTCCGTCCAAAACATTAATGATATTCGAGTTCGCCCGGTTTTCCCCGCGTGAGCGGGGATGTTCCTGTTTCCCGCGCCCACAACAACCGCAACCAATGGTTTTCCCCGCGTGAGCGGGGATGTTCCCACACGCCACCGCAACCCCCACCCACACTGCACGTTTTCCCTGCGTGAGCGGGGATGTTCCGGTTTTACCGCTACGTATTGCGCCTTCCCAGATGTTTTCCCCGCGTGAGCGGGGATGTTCCGCCGGTCGGCACCCTAAAAAATAAGGAAAAACAGTTTTCCCCGCGTGAGCGGGGATGTTCCTACATACGTTCAACATCAAATCGATTAAAGATCGTTTTCCCCGCGTGAGCGGGGATGTTCCGCTTCAGCCCGGCGATGACATCGCCATGTTCTTGTTTTCCCCGCGTGAGCGGGGATGTTCCGCACAGCGCGGAATCGGGATCTATGGCTGGTACGTTTTCCCCGCGTGAGCAGGGATGTTCCCCCTGCGTCATGCCAACACCGTCGATCTCGAAAGTTTTCCCCGCGTGAGCAGGGATGTTCCCTGCGGAAATTTCCCGGTTCGACGGTCGCACACGTTTTCCCCGCATGAGCAGGGACGTTCCCTCCCGAATTTCGACTTTTCCGCCTGTTGCTTTGTTTTCCCCGCGTGAGCAGGGATGTTCCCTCCAGCTCGTAATACCGTTGCCCTGCGGGGGTGTTTTCCCCGCGTGAGCAGGGATACTTC

>NZ_CP011542|3|3|2748620-2754128|CRISPRCasFinder
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CCACCGAAGAAAACAAATCAGCCCTTGTGGACA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CGTACAATAATCGTCATGAAACACACCGACTGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CCTCCGCCCGCAATTCCTTTTGCCTCCGCAAAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CAAACATTACGATTTGTCGGAAGCGCTACGTTT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTCGGTGTTGGCGGCGTACAACGTGGGGGGTCA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CCCTACAAGCGCCGAAAGAAATACACGGCATTA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CCCCTGCTTAATGCCATCGAACGCAGGTTTGAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGCCCCAACACCTTAGAAGCCACCTCAATACCC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCGGTAGATACAGGTGATAATCCAAAGGACAAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTGATCCTCATTGGTTGTGAGACCAAACCGTTT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTCCCCTAGAACACCCCATGTGGGAAGCTCAAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTATAAGCCGCCACAATGACACTTCGCTGATTA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTTGAAAATGTGGTGTATAACCCTGATACTCAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCCGACACAAAGATACTTCACTGATTACGCTGC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGCATAGCCACTCTCAGATGGGGTTTAGCTCTT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TATCTATCACCAACCCCACAATGGAAGGACAAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGACACTATCGAAAATTTGGACGAACGCAGAAC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	AGCGTGGAGAACGCGATTAGCCAGAATCACGCTA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCCCGCCTGCTCTCGCAGGTGCTCCAACTGCAC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGGTGACTGAAACCTTGTCTTTCGTAATCCAGT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTGGGATCCGGGTTCGGGTCGTGGGGTGCCAGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CGTCAACAGGGTCGCCTGCTGAGATGGAGATTG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TACGGGTGCCGTAACGGTGCGTACCGCATAAAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCTTGCATGAGCTGCTGAAACCAGCAACCCCGC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GATCGGTTGGTTGCAGCGTTCGCTGAATGCTAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTGCCGAACCATGCGGGGGAAAACGTTCGAAAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GATCGGTTGGTTGCAGCGTTCGCTGAATGCTAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTGCCGAACCATGCGGGGGAAAACGTTCGAAAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GATCGGTTGGTTGCAGCGTTCGCTGAATGCTAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTGCCGAACCATGCGGGGGAAAACGTTCGAAAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCGACCGGAGCTGGTCAAGTGTCCCCTGATAGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CTAACCCGGCGCAAGAATGAGATCATAGCGGAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGGAATTATCCGAGTTCGATTCAATTCAAGGAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CCGCAACCTACACTTTTGAGGTAGATGGTGAGT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CGGCTAGCGAACGGCTTCCCGAATCAGTCTATG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTAATTTATAAGGGTCGCCTTATAGATAGTGCG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTCCCGTAGTAATTTACCGTGATGGATATTGGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGGCCTACCGAAGGGCCTACC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	ACCTCCGATCAGGTCACACTGTCCGAGGGGTGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	ACGGTATTTTGATTGCTCGCCACGTATCTGCGCT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TCCGAGTGCAACCCGCAGCTTTTCGATTGCGGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTAAACGCGCCAAAAACCGTGTGCTTATCAAAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTCGGACTTGCCAACGACCACATGCCAAAAGCA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTCCTCACGGAAAGTTTTTGCAGCTTCCAGCAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	ACACCCCGCTACCAGCGGGGTTGACAACTTTTT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CTACGATATGGTAGTTGCTAATACTCACGGCTA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTAGATTATCTAGGGTCATTACAGCTCCTAAAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTAGATTATCTAGGGTCATTACAGCTCCTAAAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TAGTCATGTAAGGCAATCAATCCAAAAGGTAAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TCAATCAAAACCCTCTCAAACTCACTCAAAATA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGCTGCAAAAACCAAAAACCACCCTAGGGTATA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CATAGGTGAAGATATTTCATGGTCTTGTAGACC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CAAATACCTCAACGCAACCCCAATCGAACGGAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTCCATCCGTTCAAAAAACGAATCTTCGCATTC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CATGTGAAATATCTGTGCGACGAATACCTAGGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CAATTCGGACACTTTGTGTTCCCAGTCAGCTTT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTACCACCGACAACACCACAAAAACAGCAAACA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCGGTGTGATTCTGTGTGAGTCCGAGGGTGGTC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTCTTTTCGCACTTCGTCAAGCATCGCCATTAC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GAAAAACTAATTTCGCAATCGGCAAAAACACTA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTGGAGTATCGCCCCCAATTTCCTCACGGAAAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGGGTGGCGACTTCCCCTAGTTGACAAAACATG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTTTTCCCATGTAGATGGTACTATCTGGAACCAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGGCGATTTGAAGGCGGCGCAAACGGCGTTGAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CGGCATGGGGGAACCCCGAGTGTTTCACACCAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCATCGAACCTTTATCCGCGTGGGTGCAGGAAC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGCTGCAAAAACCAAAAACCACCCTAGGGTATA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GATGAGTATCACGGTAGGGATATGGACGGCTAC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGCGACCACAAAACCCCACCACAACCACCAAAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTCCAACACCTCGCCGAACGCATCTACCAACTA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TCCGTCTGTGATTGCGTGCCAGATTGTTTTATC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCCGTTTTATATAAACCTTGTTTGCTAAAGGAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTGGAGTTGGGCTGCGAGAGACAAAGAGGTTAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCACGGAGTCGAGCGGAACCCATGGTGAACCCG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CGTGAATGCGCCGAGTTCAGGAGGCTGGGGCAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGTGTGGTGTTGTTGGTGGAATTGTTCGGTGTT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGAGACTTTCGAGTCGCAGCTTACTCGGATCAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGGAAACCTTACTGACACGTTATTTGAAAACTC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTCCAAAACATTAATGATATTCGAGTTCGCCCG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGTTTCCCGCGCCCACAACAACCGCAACCAATG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CACACGCCACCGCAACCCCCACCCACACTGCAC
GTTTTCCCTGCGTGAGCGGGGATGTTCC	GGTTTTACCGCTACGTATTGCGCCTTCCCAGAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCCGGTCGGCACCCTAAAAAATAAGGAAAAACA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TACATACGTTCAACATCAAATCGATTAAAGATC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCTTCAGCCCGGCGATGACATCGCCATGTTCTT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCACAGCGCGGAATCGGGATCTATGGCTGGTAC
GTTTTCCCCGCGTGAGCAGGGATGTTCC	CCCTGCGTCATGCCAACACCGTCGATCTCGAAA
GTTTTCCCCGCGTGAGCAGGGATGTTCC	CTGCGGAAATTTCCCGGTTCGACGGTCGCACAC
GTTTTCCCCGCATGAGCAGGGACGTTCC	CTCCCGAATTTCGACTTTTCCGCCTGTTGCTTT
GTTTTCCCCGCGTGAGCAGGGATGTTCC	CTCCAGCTCGTAATACCGTTGCCCTGCGGGGGT
GTTTTCCCCGCGTGAGCAGGGATACTTC

>NZ_CP011542|3|2|2748620-2754128|CRT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CCACCGAAGAAAACAAATCAGCCCTTGTGGACA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CGTACAATAATCGTCATGAAACACACCGACTGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CCTCCGCCCGCAATTCCTTTTGCCTCCGCAAAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CAAACATTACGATTTGTCGGAAGCGCTACGTTT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTCGGTGTTGGCGGCGTACAACGTGGGGGGTCA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CCCTACAAGCGCCGAAAGAAATACACGGCATTA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CCCCTGCTTAATGCCATCGAACGCAGGTTTGAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGCCCCAACACCTTAGAAGCCACCTCAATACCC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCGGTAGATACAGGTGATAATCCAAAGGACAAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTGATCCTCATTGGTTGTGAGACCAAACCGTTT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTCCCCTAGAACACCCCATGTGGGAAGCTCAAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTATAAGCCGCCACAATGACACTTCGCTGATTA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTTGAAAATGTGGTGTATAACCCTGATACTCAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCCGACACAAAGATACTTCACTGATTACGCTGC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGCATAGCCACTCTCAGATGGGGTTTAGCTCTT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TATCTATCACCAACCCCACAATGGAAGGACAAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGACACTATCGAAAATTTGGACGAACGCAGAAC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	AGCGTGGAGAACGCGATTAGCCAGAATCACGCTA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCCCGCCTGCTCTCGCAGGTGCTCCAACTGCAC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGGTGACTGAAACCTTGTCTTTCGTAATCCAGT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTGGGATCCGGGTTCGGGTCGTGGGGTGCCAGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CGTCAACAGGGTCGCCTGCTGAGATGGAGATTG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TACGGGTGCCGTAACGGTGCGTACCGCATAAAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCTTGCATGAGCTGCTGAAACCAGCAACCCCGC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GATCGGTTGGTTGCAGCGTTCGCTGAATGCTAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTGCCGAACCATGCGGGGGAAAACGTTCGAAAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GATCGGTTGGTTGCAGCGTTCGCTGAATGCTAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTGCCGAACCATGCGGGGGAAAACGTTCGAAAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GATCGGTTGGTTGCAGCGTTCGCTGAATGCTAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTGCCGAACCATGCGGGGGAAAACGTTCGAAAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCGACCGGAGCTGGTCAAGTGTCCCCTGATAGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CTAACCCGGCGCAAGAATGAGATCATAGCGGAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGGAATTATCCGAGTTCGATTCAATTCAAGGAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CCGCAACCTACACTTTTGAGGTAGATGGTGAGT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CGGCTAGCGAACGGCTTCCCGAATCAGTCTATG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTAATTTATAAGGGTCGCCTTATAGATAGTGCG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTCCCGTAGTAATTTACCGTGATGGATATTGGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGGCCTACCGAAGGGCCTACC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	ACCTCCGATCAGGTCACACTGTCCGAGGGGTGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	ACGGTATTTTGATTGCTCGCCACGTATCTGCGCT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TCCGAGTGCAACCCGCAGCTTTTCGATTGCGGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTAAACGCGCCAAAAACCGTGTGCTTATCAAAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTCGGACTTGCCAACGACCACATGCCAAAAGCA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTCCTCACGGAAAGTTTTTGCAGCTTCCAGCAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	ACACCCCGCTACCAGCGGGGTTGACAACTTTTT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CTACGATATGGTAGTTGCTAATACTCACGGCTA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTAGATTATCTAGGGTCATTACAGCTCCTAAAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTAGATTATCTAGGGTCATTACAGCTCCTAAAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TAGTCATGTAAGGCAATCAATCCAAAAGGTAAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TCAATCAAAACCCTCTCAAACTCACTCAAAATA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGCTGCAAAAACCAAAAACCACCCTAGGGTATA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CATAGGTGAAGATATTTCATGGTCTTGTAGACC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CAAATACCTCAACGCAACCCCAATCGAACGGAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTCCATCCGTTCAAAAAACGAATCTTCGCATTC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CATGTGAAATATCTGTGCGACGAATACCTAGGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CAATTCGGACACTTTGTGTTCCCAGTCAGCTTT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTACCACCGACAACACCACAAAAACAGCAAACA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCGGTGTGATTCTGTGTGAGTCCGAGGGTGGTC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTCTTTTCGCACTTCGTCAAGCATCGCCATTAC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GAAAAACTAATTTCGCAATCGGCAAAAACACTA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTGGAGTATCGCCCCCAATTTCCTCACGGAAAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGGGTGGCGACTTCCCCTAGTTGACAAAACATG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTTTTCCCATGTAGATGGTACTATCTGGAACCAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGGCGATTTGAAGGCGGCGCAAACGGCGTTGAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CGGCATGGGGGAACCCCGAGTGTTTCACACCAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCATCGAACCTTTATCCGCGTGGGTGCAGGAAC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGCTGCAAAAACCAAAAACCACCCTAGGGTATA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GATGAGTATCACGGTAGGGATATGGACGGCTAC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGCGACCACAAAACCCCACCACAACCACCAAAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTCCAACACCTCGCCGAACGCATCTACCAACTA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TCCGTCTGTGATTGCGTGCCAGATTGTTTTATC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCCGTTTTATATAAACCTTGTTTGCTAAAGGAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTGGAGTTGGGCTGCGAGAGACAAAGAGGTTAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCACGGAGTCGAGCGGAACCCATGGTGAACCCG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CGTGAATGCGCCGAGTTCAGGAGGCTGGGGCAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGTGTGGTGTTGTTGGTGGAATTGTTCGGTGTT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGAGACTTTCGAGTCGCAGCTTACTCGGATCAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGGAAACCTTACTGACACGTTATTTGAAAACTC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTCCAAAACATTAATGATATTCGAGTTCGCCCG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGTTTCCCGCGCCCACAACAACCGCAACCAATG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CACACGCCACCGCAACCCCCACCCACACTGCAC
GTTTTCCCTGCGTGAGCGGGGATGTTCC	GGTTTTACCGCTACGTATTGCGCCTTCCCAGAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCCGGTCGGCACCCTAAAAAATAAGGAAAAACA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TACATACGTTCAACATCAAATCGATTAAAGATC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCTTCAGCCCGGCGATGACATCGCCATGTTCTT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCACAGCGCGGAATCGGGATCTATGGCTGGTAC
GTTTTCCCCGCGTGAGCAGGGATGTTCC	CCCTGCGTCATGCCAACACCGTCGATCTCGAAA
GTTTTCCCCGCGTGAGCAGGGATGTTCC	CTGCGGAAATTTCCCGGTTCGACGGTCGCACAC
GTTTTCCCCGCATGAGCAGGGACGTTCC	CTCCCGAATTTCGACTTTTCCGCCTGTTGCTTT
GTTTTCCCCGCGTGAGCAGGGATGTTCC	CTCCAGCTCGTAATACCGTTGCCCTGCGGGGGT
GTTTTCCCCGCGTGAGCAGGGATACTTC

>NZ_CP011542|3|2|2748803-2751382|PILER-CR
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CAAACATTACGATTTGTCGGAAGCGCTACGTTT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTCGGTGTTGGCGGCGTACAACGTGGGGGGTCA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CCCTACAAGCGCCGAAAGAAATACACGGCATTA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CCCCTGCTTAATGCCATCGAACGCAGGTTTGAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGCCCCAACACCTTAGAAGCCACCTCAATACCC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCGGTAGATACAGGTGATAATCCAAAGGACAAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTGATCCTCATTGGTTGTGAGACCAAACCGTTT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTCCCCTAGAACACCCCATGTGGGAAGCTCAAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTATAAGCCGCCACAATGACACTTCGCTGATTA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTTGAAAATGTGGTGTATAACCCTGATACTCAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCCGACACAAAGATACTTCACTGATTACGCTGC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGCATAGCCACTCTCAGATGGGGTTTAGCTCTT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TATCTATCACCAACCCCACAATGGAAGGACAAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGACACTATCGAAAATTTGGACGAACGCAGAAC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	AGCGTGGAGAACGCGATTAGCCAGAATCACGCTA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCCCGCCTGCTCTCGCAGGTGCTCCAACTGCAC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGGTGACTGAAACCTTGTCTTTCGTAATCCAGT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTGGGATCCGGGTTCGGGTCGTGGGGTGCCAGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CGTCAACAGGGTCGCCTGCTGAGATGGAGATTG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TACGGGTGCCGTAACGGTGCGTACCGCATAAAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCTTGCATGAGCTGCTGAAACCAGCAACCCCGC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GATCGGTTGGTTGCAGCGTTCGCTGAATGCTAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTGCCGAACCATGCGGGGGAAAACGTTCGAAAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GATCGGTTGGTTGCAGCGTTCGCTGAATGCTAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTGCCGAACCATGCGGGGGAAAACGTTCGAAAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GATCGGTTGGTTGCAGCGTTCGCTGAATGCTAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTGCCGAACCATGCGGGGGAAAACGTTCGAAAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCGACCGGAGCTGGTCAAGTGTCCCCTGATAGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CTAACCCGGCGCAAGAATGAGATCATAGCGGAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGGAATTATCCGAGTTCGATTCAATTCAAGGAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CCGCAACCTACACTTTTGAGGTAGATGGTGAGT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CGGCTAGCGAACGGCTTCCCGAATCAGTCTATG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTAATTTATAAGGGTCGCCTTATAGATAGTGCG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTCCCGTAGTAATTTACCGTGATGGATATTGGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGGCCTACCGAAGGGCCTACC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	ACCTCCGATCAGGTCACACTGTCCGAGGGGTGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	ACGGTATTTTGATTGCTCGCCACGTATCTGCGCT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TCCGAGTGCAACCCGCAGCTTTTCGATTGCGGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTAAACGCGCCAAAAACCGTGTGCTTATCAAAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTCGGACTTGCCAACGACCACATGCCAAAAGCA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTCCTCACGGAAAGTTTTTGCAGCTTCCAGCAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	ACACCCCGCTACCAGCGGGGTTGACAACTTTTT
GTTTTCCCCGCGTGAGCGGGGATGTTCCCTACGATATGGTAGTTGCTAATACTCACGGCTAGTTTTCCCCGCGTGAGCGGGGATGTTCCTTAGATTATCTAGGGTCATTACAGCTCCTAAAGGTTTTCCCCGCGTGAGCGGGGATGTTCCTTAGATTATCTAGGGTCATTACAGCTCCTAAAGGTTTTCCCCGCGTGAGCGGGGATGTTCC	TAGTCATGTAAGGCAATCAATCCAAAAGGTAAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TCAATCAAAACCCTCTCAAACTCACTCAAAATA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGCTGCAAAAACCAAAAACCACCCTAGGGTATA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CATAGGTGAAGATATTTCATGGTCTTGTAGACC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CAAATACCTCAACGCAACCCCAATCGAACGGAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTCCATCCGTTCAAAAAACGAATCTTCGCATTC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CATGTGAAATATCTGTGCGACGAATACCTAGGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CAATTCGGACACTTTGTGTTCCCAGTCAGCTTT
GTTTTCCCCGCGTGAGCGGGGATGTTCCTTACCACCGACAACACCACAAAAACAGCAAACAGTTTTCCCCGCGTGAGCGGGGATGTTCC	GCGGTGTGATTCTGTGTGAGTCCGAGGGTGGTC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTCTTTTCGCACTTCGTCAAGCATCGCCATTAC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GAAAAACTAATTTCGCAATCGGCAAAAACACTA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTGGAGTATCGCCCCCAATTTCCTCACGGAAAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGGGTGGCGACTTCCCCTAGTTGACAAAACATG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTTTTCCCATGTAGATGGTACTATCTGGAACCAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGGCGATTTGAAGGCGGCGCAAACGGCGTTGAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CGGCATGGGGGAACCCCGAGTGTTTCACACCAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCATCGAACCTTTATCCGCGTGGGTGCAGGAAC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGCTGCAAAAACCAAAAACCACCCTAGGGTATA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GATGAGTATCACGGTAGGGATATGGACGGCTAC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGCGACCACAAAACCCCACCACAACCACCAAAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTCCAACACCTCGCCGAACGCATCTACCAACTA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TCCGTCTGTGATTGCGTGCCAGATTGTTTTATC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCCGTTTTATATAAACCTTGTTTGCTAAAGGAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTGGAGTTGGGCTGCGAGAGACAAAGAGGTTAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCACGGAGTCGAGCGGAACCCATGGTGAACCCG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CGTGAATGCGCCGAGTTCAGGAGGCTGGGGCAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGTGTGGTGTTGTTGGTGGAATTGTTCGGTGTT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGAGACTTTCGAGTCGCAGCTTACTCGGATCAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGGAAACCTTACTGACACGTTATTTGAAAACTC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTCCAAAACATTAATGATATTCGAGTTCGCCCG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGTTTCCCGCGCCCACAACAACCGCAACCAATG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CACACGCCACCGCAACCCCCACCCACACTGCAC
GTTTTCCCTGCGTGAGCGGGGATGTTCC	GGTTTTACCGCTACGTATTGCGCCTTCCCAGAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCCGGTCGGCACCCTAAAAAATAAGGAAAAACA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TACATACGTTCAACATCAAATCGATTAAAGATC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCTTCAGCCCGGCGATGACATCGCCATGTTCTT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCACAGCGCGGAATCGGGATCTATGGCTGGTAC
GTTTTCCCCGCGTGAGCAGGGATGTTCC	CCCTGCGTCATGCCAACACCGTCGATCTCGAAA
GTTTTCCCCGCGTGAGCAGGGATGTTCC	CTGCGGAAATTTCCCGGTTCGACGGTCGCACAC
GTTTTCCCCGCATGAGCAGGGACGTTCC	CTCCCGAATTTCGACTTTTCCGCCTGTTGCTTT


>NZ_CP011542|3|3|2751538-2752053|PILER-CR
	CAAACATTACGATTTGTCGGAAGCGCTACGTTT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTCGGTGTTGGCGGCGTACAACGTGGGGGGTCA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CCCTACAAGCGCCGAAAGAAATACACGGCATTA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CCCCTGCTTAATGCCATCGAACGCAGGTTTGAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGCCCCAACACCTTAGAAGCCACCTCAATACCC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCGGTAGATACAGGTGATAATCCAAAGGACAAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTGATCCTCATTGGTTGTGAGACCAAACCGTTT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTCCCCTAGAACACCCCATGTGGGAAGCTCAAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTATAAGCCGCCACAATGACACTTCGCTGATTA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTTGAAAATGTGGTGTATAACCCTGATACTCAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCCGACACAAAGATACTTCACTGATTACGCTGC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGCATAGCCACTCTCAGATGGGGTTTAGCTCTT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TATCTATCACCAACCCCACAATGGAAGGACAAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGACACTATCGAAAATTTGGACGAACGCAGAAC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	AGCGTGGAGAACGCGATTAGCCAGAATCACGCTA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCCCGCCTGCTCTCGCAGGTGCTCCAACTGCAC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGGTGACTGAAACCTTGTCTTTCGTAATCCAGT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTGGGATCCGGGTTCGGGTCGTGGGGTGCCAGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CGTCAACAGGGTCGCCTGCTGAGATGGAGATTG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TACGGGTGCCGTAACGGTGCGTACCGCATAAAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCTTGCATGAGCTGCTGAAACCAGCAACCCCGC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GATCGGTTGGTTGCAGCGTTCGCTGAATGCTAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTGCCGAACCATGCGGGGGAAAACGTTCGAAAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GATCGGTTGGTTGCAGCGTTCGCTGAATGCTAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTGCCGAACCATGCGGGGGAAAACGTTCGAAAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GATCGGTTGGTTGCAGCGTTCGCTGAATGCTAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTGCCGAACCATGCGGGGGAAAACGTTCGAAAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCGACCGGAGCTGGTCAAGTGTCCCCTGATAGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CTAACCCGGCGCAAGAATGAGATCATAGCGGAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGGAATTATCCGAGTTCGATTCAATTCAAGGAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CCGCAACCTACACTTTTGAGGTAGATGGTGAGT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CGGCTAGCGAACGGCTTCCCGAATCAGTCTATG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTAATTTATAAGGGTCGCCTTATAGATAGTGCG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTCCCGTAGTAATTTACCGTGATGGATATTGGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGGCCTACCGAAGGGCCTACC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	ACCTCCGATCAGGTCACACTGTCCGAGGGGTGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	ACGGTATTTTGATTGCTCGCCACGTATCTGCGCT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TCCGAGTGCAACCCGCAGCTTTTCGATTGCGGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTAAACGCGCCAAAAACCGTGTGCTTATCAAAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTCGGACTTGCCAACGACCACATGCCAAAAGCA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTCCTCACGGAAAGTTTTTGCAGCTTCCAGCAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	ACACCCCGCTACCAGCGGGGTTGACAACTTTTT
GTTTTCCCCGCGTGAGCGGGGATGTTCCCTACGATATGGTAGTTGCTAATACTCACGGCTAGTTTTCCCCGCGTGAGCGGGGATGTTCCTTAGATTATCTAGGGTCATTACAGCTCCTAAAGGTTTTCCCCGCGTGAGCGGGGATGTTCCTTAGATTATCTAGGGTCATTACAGCTCCTAAAGGTTTTCCCCGCGTGAGCGGGGATGTTCC	TAGTCATGTAAGGCAATCAATCCAAAAGGTAAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TCAATCAAAACCCTCTCAAACTCACTCAAAATA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGCTGCAAAAACCAAAAACCACCCTAGGGTATA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CATAGGTGAAGATATTTCATGGTCTTGTAGACC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CAAATACCTCAACGCAACCCCAATCGAACGGAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTCCATCCGTTCAAAAAACGAATCTTCGCATTC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CATGTGAAATATCTGTGCGACGAATACCTAGGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CAATTCGGACACTTTGTGTTCCCAGTCAGCTTT
GTTTTCCCCGCGTGAGCGGGGATGTTCCTTACCACCGACAACACCACAAAAACAGCAAACAGTTTTCCCCGCGTGAGCGGGGATGTTCC	GCGGTGTGATTCTGTGTGAGTCCGAGGGTGGTC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTCTTTTCGCACTTCGTCAAGCATCGCCATTAC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GAAAAACTAATTTCGCAATCGGCAAAAACACTA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTGGAGTATCGCCCCCAATTTCCTCACGGAAAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGGGTGGCGACTTCCCCTAGTTGACAAAACATG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTTTTCCCATGTAGATGGTACTATCTGGAACCAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGGCGATTTGAAGGCGGCGCAAACGGCGTTGAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CGGCATGGGGGAACCCCGAGTGTTTCACACCAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCATCGAACCTTTATCCGCGTGGGTGCAGGAAC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGCTGCAAAAACCAAAAACCACCCTAGGGTATA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GATGAGTATCACGGTAGGGATATGGACGGCTAC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGCGACCACAAAACCCCACCACAACCACCAAAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTCCAACACCTCGCCGAACGCATCTACCAACTA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TCCGTCTGTGATTGCGTGCCAGATTGTTTTATC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCCGTTTTATATAAACCTTGTTTGCTAAAGGAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTGGAGTTGGGCTGCGAGAGACAAAGAGGTTAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCACGGAGTCGAGCGGAACCCATGGTGAACCCG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CGTGAATGCGCCGAGTTCAGGAGGCTGGGGCAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGTGTGGTGTTGTTGGTGGAATTGTTCGGTGTT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGAGACTTTCGAGTCGCAGCTTACTCGGATCAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGGAAACCTTACTGACACGTTATTTGAAAACTC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTCCAAAACATTAATGATATTCGAGTTCGCCCG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGTTTCCCGCGCCCACAACAACCGCAACCAATG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CACACGCCACCGCAACCCCCACCCACACTGCAC
GTTTTCCCTGCGTGAGCGGGGATGTTCC	GGTTTTACCGCTACGTATTGCGCCTTCCCAGAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCCGGTCGGCACCCTAAAAAATAAGGAAAAACA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TACATACGTTCAACATCAAATCGATTAAAGATC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCTTCAGCCCGGCGATGACATCGCCATGTTCTT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCACAGCGCGGAATCGGGATCTATGGCTGGTAC
GTTTTCCCCGCGTGAGCAGGGATGTTCC	CCCTGCGTCATGCCAACACCGTCGATCTCGAAA
GTTTTCCCCGCGTGAGCAGGGATGTTCC	CTGCGGAAATTTCCCGGTTCGACGGTCGCACAC
GTTTTCCCCGCATGAGCAGGGACGTTCC	CTCCCGAATTTCGACTTTTCCGCCTGTTGCTTT


>NZ_CP011542|3|4|2752087-2754067|PILER-CR
	CAAACATTACGATTTGTCGGAAGCGCTACGTTT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTCGGTGTTGGCGGCGTACAACGTGGGGGGTCA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CCCTACAAGCGCCGAAAGAAATACACGGCATTA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CCCCTGCTTAATGCCATCGAACGCAGGTTTGAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGCCCCAACACCTTAGAAGCCACCTCAATACCC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCGGTAGATACAGGTGATAATCCAAAGGACAAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTGATCCTCATTGGTTGTGAGACCAAACCGTTT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTCCCCTAGAACACCCCATGTGGGAAGCTCAAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTATAAGCCGCCACAATGACACTTCGCTGATTA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTTGAAAATGTGGTGTATAACCCTGATACTCAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCCGACACAAAGATACTTCACTGATTACGCTGC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGCATAGCCACTCTCAGATGGGGTTTAGCTCTT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TATCTATCACCAACCCCACAATGGAAGGACAAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGACACTATCGAAAATTTGGACGAACGCAGAAC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	AGCGTGGAGAACGCGATTAGCCAGAATCACGCTA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCCCGCCTGCTCTCGCAGGTGCTCCAACTGCAC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGGTGACTGAAACCTTGTCTTTCGTAATCCAGT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTGGGATCCGGGTTCGGGTCGTGGGGTGCCAGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CGTCAACAGGGTCGCCTGCTGAGATGGAGATTG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TACGGGTGCCGTAACGGTGCGTACCGCATAAAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCTTGCATGAGCTGCTGAAACCAGCAACCCCGC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GATCGGTTGGTTGCAGCGTTCGCTGAATGCTAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTGCCGAACCATGCGGGGGAAAACGTTCGAAAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GATCGGTTGGTTGCAGCGTTCGCTGAATGCTAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTGCCGAACCATGCGGGGGAAAACGTTCGAAAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GATCGGTTGGTTGCAGCGTTCGCTGAATGCTAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTGCCGAACCATGCGGGGGAAAACGTTCGAAAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCGACCGGAGCTGGTCAAGTGTCCCCTGATAGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CTAACCCGGCGCAAGAATGAGATCATAGCGGAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGGAATTATCCGAGTTCGATTCAATTCAAGGAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CCGCAACCTACACTTTTGAGGTAGATGGTGAGT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CGGCTAGCGAACGGCTTCCCGAATCAGTCTATG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTAATTTATAAGGGTCGCCTTATAGATAGTGCG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTCCCGTAGTAATTTACCGTGATGGATATTGGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGGCCTACCGAAGGGCCTACC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	ACCTCCGATCAGGTCACACTGTCCGAGGGGTGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	ACGGTATTTTGATTGCTCGCCACGTATCTGCGCT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TCCGAGTGCAACCCGCAGCTTTTCGATTGCGGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTAAACGCGCCAAAAACCGTGTGCTTATCAAAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTCGGACTTGCCAACGACCACATGCCAAAAGCA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTCCTCACGGAAAGTTTTTGCAGCTTCCAGCAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	ACACCCCGCTACCAGCGGGGTTGACAACTTTTT
GTTTTCCCCGCGTGAGCGGGGATGTTCCCTACGATATGGTAGTTGCTAATACTCACGGCTAGTTTTCCCCGCGTGAGCGGGGATGTTCCTTAGATTATCTAGGGTCATTACAGCTCCTAAAGGTTTTCCCCGCGTGAGCGGGGATGTTCCTTAGATTATCTAGGGTCATTACAGCTCCTAAAGGTTTTCCCCGCGTGAGCGGGGATGTTCC	TAGTCATGTAAGGCAATCAATCCAAAAGGTAAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TCAATCAAAACCCTCTCAAACTCACTCAAAATA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGCTGCAAAAACCAAAAACCACCCTAGGGTATA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CATAGGTGAAGATATTTCATGGTCTTGTAGACC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CAAATACCTCAACGCAACCCCAATCGAACGGAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTCCATCCGTTCAAAAAACGAATCTTCGCATTC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CATGTGAAATATCTGTGCGACGAATACCTAGGG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CAATTCGGACACTTTGTGTTCCCAGTCAGCTTT
GTTTTCCCCGCGTGAGCGGGGATGTTCCTTACCACCGACAACACCACAAAAACAGCAAACAGTTTTCCCCGCGTGAGCGGGGATGTTCC	GCGGTGTGATTCTGTGTGAGTCCGAGGGTGGTC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTCTTTTCGCACTTCGTCAAGCATCGCCATTAC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GAAAAACTAATTTCGCAATCGGCAAAAACACTA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TTGGAGTATCGCCCCCAATTTCCTCACGGAAAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGGGTGGCGACTTCCCCTAGTTGACAAAACATG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTTTTCCCATGTAGATGGTACTATCTGGAACCAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGGCGATTTGAAGGCGGCGCAAACGGCGTTGAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CGGCATGGGGGAACCCCGAGTGTTTCACACCAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCATCGAACCTTTATCCGCGTGGGTGCAGGAAC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGCTGCAAAAACCAAAAACCACCCTAGGGTATA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GATGAGTATCACGGTAGGGATATGGACGGCTAC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGCGACCACAAAACCCCACCACAACCACCAAAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTCCAACACCTCGCCGAACGCATCTACCAACTA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TCCGTCTGTGATTGCGTGCCAGATTGTTTTATC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCCGTTTTATATAAACCTTGTTTGCTAAAGGAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTGGAGTTGGGCTGCGAGAGACAAAGAGGTTAG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCACGGAGTCGAGCGGAACCCATGGTGAACCCG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CGTGAATGCGCCGAGTTCAGGAGGCTGGGGCAA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGTGTGGTGTTGTTGGTGGAATTGTTCGGTGTT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGAGACTTTCGAGTCGCAGCTTACTCGGATCAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GGGAAACCTTACTGACACGTTATTTGAAAACTC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GTCCAAAACATTAATGATATTCGAGTTCGCCCG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TGTTTCCCGCGCCCACAACAACCGCAACCAATG
GTTTTCCCCGCGTGAGCGGGGATGTTCC	CACACGCCACCGCAACCCCCACCCACACTGCAC
GTTTTCCCTGCGTGAGCGGGGATGTTCC	GGTTTTACCGCTACGTATTGCGCCTTCCCAGAT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCCGGTCGGCACCCTAAAAAATAAGGAAAAACA
GTTTTCCCCGCGTGAGCGGGGATGTTCC	TACATACGTTCAACATCAAATCGATTAAAGATC
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCTTCAGCCCGGCGATGACATCGCCATGTTCTT
GTTTTCCCCGCGTGAGCGGGGATGTTCC	GCACAGCGCGGAATCGGGATCTATGGCTGGTAC
GTTTTCCCCGCGTGAGCAGGGATGTTCC	CCCTGCGTCATGCCAACACCGTCGATCTCGAAA
GTTTTCCCCGCGTGAGCAGGGATGTTCC	CTGCGGAAATTTCCCGGTTCGACGGTCGCACAC
GTTTTCCCCGCATGAGCAGGGACGTTCC	CTCCCGAATTTCGACTTTTCCGCCTGTTGCTTT
GTTTTCCCCGCGTGAGCAGGGATGTTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011542.1\|WP_047262752.1\|2745874_2746576_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|187886
NZ_CP011542.1\|WP_047262753.1\|2746575_2747238_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
NZ_CP011542.1\|WP_052844739.1\|2742455_2744102_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	pfam09481_cas8e_CAS-I-E	gnl\|CDD\|378189
NZ_CP011542.1\|WP_047262759.1\|2760491_2760890_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226944
NZ_CP011542.1\|WP_047262754.1\|2747243_2748218_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|187850
NZ_CP011542.1\|WP_047262750.1\|2744102_2744720_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NZ_CP011542.1\|WP_047262748.1\|2738930_2739143_-\|DUF4926-domain-containing-protein	unknown	unknown	gnl\|CDD\|379816
NZ_CP011542.1\|WP_047262762.1\|2762589_2763204_-\|non-canonical-purine-NTP-pyrophosphatase	unknown	unknown	gnl\|CDD\|234648
NZ_CP011542.1\|WP_047262761.1\|2761380_2762550_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|238038
NZ_CP011542.1\|WP_047262747.1\|2737439_2738846_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274522
NZ_CP011542.1\|WP_052844743.1\|2759105_2760017_-\|PIG-L-family-deacetylase	unknown	unknown	gnl\|CDD\|225031
NZ_CP011542.1\|WP_047262757.1\|2756949_2758221_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|236882
NZ_CP011542.1\|WP_083987566.1\|2748214_2748565_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|378244
NZ_CP011542.1\|WP_052844740.1\|2754509_2755271_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223200
NZ_CP011542.1\|WP_047262756.1\|2755852_2756947_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011542.1\|WP_047262758.1\|2758229_2759102_-\|ATP-grasp-domain-containing-protein	unknown	unknown	gnl\|CDD\|237195
NZ_CP011542.1\|WP_047262755.1\|2755299_2755845_-\|DUF1697-domain-containing-protein	unknown	unknown	gnl\|CDD\|226319
NZ_CP011542.1\|WP_047262751.1\|2744735_2745872_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP011542.1\|WP_047262749.1\|2739518_2742368_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP011542.1\|WP_047262760.1\|2760901_2761249_+\|DUF3817-domain-containing-protein	unknown	unknown	gnl\|CDD\|378962

Protein	Function_ID	Function_description	E-value
NZ_CP011542.1\|WP_047262752.1\|2745874_2746576_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.39277e-49
NZ_CP011542.1\|WP_047262753.1\|2746575_2747238_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	2.67533e-74
NZ_CP011542.1\|WP_052844739.1\|2742455_2744102_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	9.4541e-94
NZ_CP011542.1\|WP_047262759.1\|2760491_2760890_+\|hypothetical-protein	gnl\|CDD\|226944	COG4578, GutM, Glucitol operon activator [Transcription].	3.52178e-24
NZ_CP011542.1\|WP_047262754.1\|2747243_2748218_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187850	cd09719, Cas1_I-E, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.48068e-124
NZ_CP011542.1\|WP_047262750.1\|2744102_2744720_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	4.07887e-33
NZ_CP011542.1\|WP_047262748.1\|2738930_2739143_-\|DUF4926-domain-containing-protein	gnl\|CDD\|379816	pfam16277, DUF4926, Domain of unknown function (DUF4926). This family consists of uncharacterized proteins around 70 residues in length and is mainly found in various Caulobacter, Microcystis and Cyanothece species. The function of this family is unknown.	1.83337e-15
NZ_CP011542.1\|WP_047262762.1\|2762589_2763204_-\|non-canonical-purine-NTP-pyrophosphatase	gnl\|CDD\|234648	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.	4.74461e-93
NZ_CP011542.1\|WP_047262761.1\|2761380_2762550_+\|HNH-endonuclease	gnl\|CDD\|238038	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.	2.10571e-09
NZ_CP011542.1\|WP_047262747.1\|2737439_2738846_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|274522	TIGR03329, Phn_aa_oxid, putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.	6.94586e-65
NZ_CP011542.1\|WP_052844743.1\|2759105_2760017_-\|PIG-L-family-deacetylase	gnl\|CDD\|225031	COG2120, COG2120, Uncharacterized proteins, LmbE homologs [Function unknown].	6.11973e-33
NZ_CP011542.1\|WP_047262757.1\|2756949_2758221_-\|glycosyltransferase	gnl\|CDD\|236882	PRK11204, PRK11204, N-glycosyltransferase; Provisional.	1.27466e-65
NZ_CP011542.1\|WP_083987566.1\|2748214_2748565_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	1.50746e-35
NZ_CP011542.1\|WP_052844740.1\|2754509_2755271_+\|hypothetical-protein	gnl\|CDD\|223200	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair].	2.64587e-13
NZ_CP011542.1\|WP_047262758.1\|2758229_2759102_-\|ATP-grasp-domain-containing-protein	gnl\|CDD\|237195	PRK12767, PRK12767, carbamoyl phosphate synthase-like protein; Provisional.	5.04407e-43
NZ_CP011542.1\|WP_047262755.1\|2755299_2755845_-\|DUF1697-domain-containing-protein	gnl\|CDD\|226319	COG3797, COG3797, Uncharacterized protein conserved in bacteria [Function unknown].	1.39947e-06
NZ_CP011542.1\|WP_047262751.1\|2744735_2745872_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.09615e-138
NZ_CP011542.1\|WP_047262749.1\|2739518_2742368_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	6.86645e-87
NZ_CP011542.1\|WP_047262760.1\|2760901_2761249_+\|DUF3817-domain-containing-protein	gnl\|CDD\|378962	pfam12823, DUF3817, Domain of unknown function (DUF3817). This domain is of unknown function. It is sometimes found adjacent to pfam07690 and pfam03176 which are both transporter domains.	2.48994e-24

>NZ_CP011542.1|WP_083987566.1|2748214_2748565_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MITVVLTACPESLRGHLTRWLSEVSAGVFVGKVNPRIRDKLWGLIVAECKNGRAIMTFTTRDREQGYDFRLHNHDWETVDCEGLVLIKRPSPNHSKPNSKPKPGWSRAGRRKRFHR
>NZ_CP011542.1|WP_047262754.1|2747243_2748218_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MGKSIPGMAPSKPSSLVRADDRISFLYLEHCTIGKSSSALTATDENGVIHIPSATLSVLMFGPGTRVTHQAMSTIADSGMSVIWVGEEGVRYYAHGRPIGRNTKLLEAQARIVSNTRLRLQAARIMYEMRFAGEDTSSLTMQQLRGREGARVRKIYAEMSKTHKVEWNKRQYDPDDFLASDPINLALSAAHTSLYGLVHATIVALGCSPGLGIIHTGHDRSFVYDIADLYKADVTIPIAFESVVAMRDLDFPLDQLASYTRRCCRNAFKQARLTETIVRDIKTLLLPDAEEAEDELYFEAEVIALWDERGKKVVGGKNYETEMP
>NZ_CP011542.1|WP_047262753.1|2746575_2747238_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MPYLSTMELNGQRRQTAKFLANPRTMHAAIESCFPSTPDEGNPRVLWRLERHGSKVTLWLVSERQPSFEHIQEQAGWSAQPTWETRNYDLLLDRLMTGQYYQFRLTANPVICTVCEDGKKRHVGLVREPDQINWLLARQENLGISVQSDPDSVPTFSVSRSKRVRFPHKNKQTYVTIDQCQFDGVLTVTDPNALRTALIEGIGRSKAYGSGLLTLATYKG
>NZ_CP011542.1|WP_047262752.1|2745874_2746576_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSTLLLQLSGPLQAWGDSSRFAYRTTRREPTKSGVIGLLAAAQGRERTADLADLVGLRFGVRIDQVGRVIQDFQTEIDWRTGKSKPLTHRQYLADAKFVAALEGPSTVLDGIVESIKSPVFPLFLGRRSCPPSSPVFLSLQDGDLETELQSWPWIASDWYKRKQPKTIQLAISRDCKTGENPDEMIRDLPVCFEQRNRRHELRPVIHSFTQPFTNPLGNEDDPHNPYSLLGGV
>NZ_CP011542.1|WP_047262751.1|2744735_2745872_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MFIDFHAIQAIGPANINRDDSGSPKSTVFGGTRRTRVSSQAWKRAIRKDFEEHLDAEMLGERTLFAVDRIAKAITEEAPEFAEQSQKMAEEVLKAGGIKIQAAKKKKDDPENLPEKLITGYLLFLARAQIKALAHLAVTAYQEADGKIDKKSAKAAINDKHSIDVALFGRMIADSHDLSSDACCQVAHAVSVHPMEIEFDYFTAVDDNAPEDNAGAGMIGSIEFNASTLYRYATINVDALVTTLGSVDAAKKAIGAFTKAFALSMPTGKQTTFANRTRPEFFAISIRTDQPVNFVDAFEDAILVSKGRTSEATRRLAEYAIQSDKIYGSDSTNYYLATGTAATEELQLTLANFGENCTLPEIVSHAEEVARKATTEIE
>NZ_CP011542.1|WP_047262750.1|2744102_2744720_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MAASKTAQIRAVTTRIISQLQDGYLAGTPNAKANIAAFRRQANRHLGESPETWAVFSESLPADLVGKGENPSPAEKAIFTALTLYAVHQQSKTEPMHVPSQPPESGTFTAENGLGTAVRKMATITDTELFDSSLYRRFVSIVQSQTFEATVHHLRSMIQLLRTESIPLDYGLLAKDLYRFQFPDSKKSVQLSWARQLYRTESPTE
>NZ_CP011542.1|WP_052844739.1|2742455_2744102_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MTKSYNLLTENWIPVRFTDDTIENIGIKSFFEKAETISDIACDLPTMRFAIFRVLFAIFCRSIDEDMEEESASLWKELWDSDSLPIEEINTYLEEHHNRFDLLHPEYPFLQTPSLHTKSGEWKELDIIVADSPGEGALYSQTDPRHPISFAEGARWLIHATQFDYSGIKSGAVGDDRVKGGKGYPMGIGWCGWMGCTIIRGMNMKETLLLNYVPRSNDSSDYGETSDLPIWELPTPQAHKQDVLIATGQLSLIAWPQRRIRLRNNGSRFDGVLVCNGDPVDYLSQLSHETMTPWRFSKPQSSKAKQDIYMPRSLDPGVALWRGLQSLLPYDNRSATVKSVSTPTTTVPAFLPPKTIEVVAQRIGTVLPRNFILNVEVSSMLYGTQSASFSEVVHDKLSFPGLLAVTSEEALRSRALTAVDRAVNSINVLGDFAANVARSETDSKEAPDNARNRAKESAFSLVDPFFRSWLQKLSTDATKAEDQLAEWTAWLYHTLRNEAQQISHNASPAAWHGRKKDDFNFTLGQSEAWFFSRLRKALPIRTERKETE
>NZ_CP011542.1|WP_047262749.1|2739518_2742368_+|CRISPR-associated-helicase/endonuclease-Cas3
MPNAPFIQDPPSVEEHKNAWAKYDRHSGGWLPLYRHLDDIACVAAALWDTWLTPNSKALICDSFDGDENFGRQVAVFLASGHDIGKCSSAFAIKVPECASRMTAAGAVFLTLDKADKKSMPHGTVSALSLIDWLESQVQPEDCFAIESLSTIVGGHHGVFPSKVNLLNCFPYTREKETHWHKDRLLLWERAAKTAGFSQQDLVRLTKKSLSQTAQMTLCGFIIMSDWIASNTQWFPLDDYRSSKQRAEIAFASLHFPKPWLASPPIDDLELFQNSFSLPEGSAPRPVQKAAMELARKADSACLILIEAPTGEGKTEAAFTAAEILASRFNLSGITIALPTCATSDAMFPRMLRWLANRLPSDKEASTVLCHGKAQYNEEYTGLFSKTSNDFSPIYGEEAENKASLIPHWWFSGRKTSALSDFTIGTIDQVLFGALRSRHLALRHLGFSGKVVILDEIHCADSYMSVYLDRILIWLGAMGTPVIALSATLDPKRRGELLTAYRTGVCKNTRVPYKKHAAKSDLNAAYEQRDYPLISVSNSSEVTFSNPSPSGRSTQFNVKFLGSETSTLIEKVLQLSEIGGCVGVVCNTVSRAQQVYEEVKQKVTDDVEIVLLHSRFSAYDRRRIEKSIVERLGPNANNRPSKLVVVSTQVIEQSMDIDFDCMISDIAPMDLIFQRAGRLHRHHRPQNQRPSQHQLPTLYVSGCDAPTEEEPPFVEKGSSFVYGQASLLRSLRVLQLHDRTIKSPDDVANFVRLSYSPSLTPPGSWISVWEEANREAEEDNKLRKIKAKQYLLPVPAIKEPVWEIDTLKPVEAREEIKGHAQVRDIEDSLDVILIEKTTDHFQIPSWVPKYGNTKLEFHFPIPEEESKILAMCTVPLPQWVLKGKIGEALLDALELCVFSEEEVFNISKNKWLKEQLFLPLTPSHEATVAGLHFSYSTELGMKVTSANPE
>NZ_CP011542.1|WP_047262748.1|2738930_2739143_-|DUF4926-domain-containing-protein
MPFNLFQTVRLTTDIPADESIDPPEPALSAGTTGTVVDLLDGTAYLVEFADDQGRTIALPALTEDQITRA
>NZ_CP011542.1|WP_047262747.1|2737439_2738846_+|FAD-dependent-oxidoreductase
MSTAYGSTPTHDPALLTEALKDANTTPFWLDNPNRPEPRPALTEDINADLLIVGGGFCGLWTAIIAKERHPEWDVVVVEKRRIAWAASGRNGGFCESNLTHGDDNGKLHFPNELATIHKLADENFAELHRTITQYNIDAEWENTGVMVVATENHQVPWITNSNAQQLNPTDNHGHGNSPVYRAALFKKDGYSFVHPAKLAWGLAEAAEKLGVTIYENTEITDLKHNQTGATAHTPEGKITATKVALATNAFPSLLRHLRLFTLPVYDYAIVTEPLTNNQLKEIGWTQRNGITDSGKEFHYYRKTADNRILFGGWDAIYHRGRKITPRYDQRPETFRLLVDHLYTTFPSLKGTKITHAWGGVIDMSTQLVAFHGTTRNKTVAYSAGFTGLGLGATRFGAETMLDLLEGKETERTRLKMARRLPIPIPPEPIAYPLVQIMRRAVNKSDQNGGKDGLLLKLMGLFKIGFDS
>NZ_CP011542.1|WP_052844740.1|2754509_2755271_+|hypothetical-protein
MPDTSHYQPHMSVVMTDHPAWLAQKGGRLRMWRRVDGCIQEATVTDAGRWVAGSSSDQDPQIIASISESDQESSIVVRRWATTDLWEAIAAGIVRQVIRADQARKLYSVAAQRLGDEYTPSFRGFPSAQQVLLRPVQDFVDCGLAFQVPKLKAAAEWYVAAPAAPLELDVLANQLGEIPGIGPWSVGVIIADISNDFAWYPYDDLAVRRGAQRLWPDYGFPDKPGAFARRWAEFAGKNLAEFTAVALSGIASL
>NZ_CP011542.1|WP_047262755.1|2755299_2755845_-|DUF1697-domain-containing-protein
MLGTAGVNYVVFFRNMNLGHAGSPNRAQLEAAFRDAGCEAATSFQTNGTVIIATATPDKHTQQATETIAHTCGYDDAYFIIPIDRLKKIVINDGYAHHTNDDTYRETVTFFRSNTEPTWELPWTNPKNDVTIFAIDDGIALGTIRKRNNTAGSPTREIETATSGVATTRTRGTIIRLLKKI
>NZ_CP011542.1|WP_047262756.1|2755852_2756947_-|hypothetical-protein
MNRRQFLQLALSTTGITLLSACGSSSELKKLNNAPIPEERSVNFGFEDVSNLDYDWAGAADKLKTVGANAVGLGVGRVEWVAHPWPAYTDSQALDDTADPVQTAMTTLGDSFHYSLIIDTLVPAMIADDPSLAGVSPNGKRSTDFASVTALRDGDVGDRIIELAEYLAQRYNPERIVLTELMFDDYTFGEDDLESYKKLSGATDWPRTGTSIDTADPSLGKWRSEALRHLAEKIQDQLPDNTQLELDVRAPWDDPTSDRALSGHDYDVLLSQADRIGVWNYHVMNDKPARYSQELATSLSDRYGDRYTISVGLWGDNDTTVSPADMALALRYSAQGGADHVSVTPASKMTDEHWTTLGEIWVGQ
>NZ_CP011542.1|WP_047262757.1|2756949_2758221_-|glycosyltransferase
MSVLVTATVAALSVFIFWIGAIKILFIPLSAIFELQAARRRRRQAKTPKREEPLVSIIVPGYNEDRVVVSCVQSIVAANYENYELILVNDGSTDSTADTMRELARTYPKTIFVDQPNSGKGAALNTGTAYSNGRFIMYVDSDGVFGKDTINEMLRPFENRKVGAVSGDDRPVNLDRVLTKLLSLISHVGTGFIRRALSVIDCLPVVSGNIGMFRREALEKAGALRTDTLGEDLELTWRMHRAGYTVKFAPRAVVYAESPSTLRGLWRQRVRWARGMLQATLIHKDMIGNPRYGAFGIYLLFNTLSMIVVPLAQIIVLIGLPVVFVVQPDDLPHDFIGWISLIGLSLALIVLLYSIALNKAWKDLRYFWVFPLWPIYATVMGFALGWAVILEIRGAEKNWNKLERTGTISIEGLSVEKQERSEA
>NZ_CP011542.1|WP_047262758.1|2758229_2759102_-|ATP-grasp-domain-containing-protein
MNILITGVGGPAGRALVKQLATSGHSVIGVDMQEVPVAEVDAFELVPAAHDPEMINHLARLVQQYQVDVLIPTVADELLMVAKAANVGVFAHAHVVISAPEAVEKCFDKLFTMRALRESGVSVPPFGLPSDFKDAEDVFAKLGEVIITKPRVARGGRGFKVHRSPAAFNLAAYDDSYIIQAFAPGEEYAPMVHMDAKGGGELVAVVHKKREDFCGTEAPLVQLIDTSEALDVAMLAVRACRALKLEGPVDLDIRRMVDGRPVVLEVNARFGANSSLAPEILEAVLSFSTE
>NZ_CP011542.1|WP_052844743.1|2759105_2760017_-|PIG-L-family-deacetylase
MALYIVLMLLVVALIGYALSPNGRAVFFKRFAAGAQIRGAFIAVLALVLIALGILIMNGEAAWSVTIPLTMIIGGCCCLLVVLLRNRIAAPQRATHPKVVLAVGAHPDDLEIACGGTLARLSDEGHEIHAIVMSDGREGGNRGVRPDEARNGARTMGIAHIDVYSLTDTRLEDHNMEMVEIVEAKINEINPEVIFTHSIHDQHQDHQAVHYAVLRAARKHPSILCFESPSVTAEFNPAVFIDITDYMNVKVKAVEDHRDQAGKRYLRCDRLKGMANFRGAQGKVELAEGFEIVRLKDSIAGLK
>NZ_CP011542.1|WP_047262759.1|2760491_2760890_+|hypothetical-protein
MSTNEETPRPIKKLKVKAWHIFFLAILIACTLGLAWWQWTRFQSGSGTFQNLGYALQWPFFGLFFVYAYKKFMAYENEKRAFEAEQADESEQFTIHNAPSNLIDEEFLPQRKQLTIEEYNQQNQPRRGTSHS
>NZ_CP011542.1|WP_047262760.1|2760901_2761249_+|DUF3817-domain-containing-protein
MTIHPERKKRVKTALTFFSISAWVTGIWLLLLTARMIAEYLLGISVPQWMHYVGQVHGLFYIIYLIATLNLGTKALWPPLRWLVTALAGCIPFLSFFVEKWRRDEVTEKFQLNTP
>NZ_CP011542.1|WP_047262761.1|2761380_2762550_+|HNH-endonuclease
MTATPLLDAYAAATRASAGILAEIKRTKPKPEHLAHQLGITHNTATQLLRNATYFSAEQLTDMARAQLTMDTITTIGRFCRKLSNLDINPDEFFQQSVNHATTASLTELAEHLATIVAKHNSAKANRPRADWARFSHSTDCDGKAYLNIKAPAADLARIRSLIDDEAKQTFHQGHASSIAEAYAHIITKRIIAHSQPITDPEPNPHNFKYRPFVTICHPWQLTNHNGKYATTDGSIINPSEFANAMLEPLGWATVAYKTPNNQLEFTPPIEIRARQATDAQRLILSNAHPICAHPDCRIPARYCQIHHIKAYAAGGETDLPNLVPLCLRHNKENDDNPTKPKNGRIEKDPTTGRIGHRRKPTEPLRHNRAPIVQYGAFEQAMRYFDTNP
>NZ_CP011542.1|WP_047262762.1|2762589_2763204_-|non-canonical-purine-NTP-pyrophosphatase
MEILLASNNEKKARELEVILAEFDLSDVRVILLRDAPTYPEPLEDGRTFVDNALIKARAGVSNTGMITLADDSGLAVEELNGCPGVLSARWAGSHGDDAANNSLLLEQMAHVPDDRRQAAFVSVCALVFPNGEEYIAEGRWDGRLLRQPQGENGFGYDPIFVPNEEIENGGMRSSAQLSPNEKNAVSHRRKALLQLAPIIGQHL

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Crispr_ID: NZ_CP011542_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011542_4

2930351-2930484

Orphan

Consensus_repeat	Method
CGCTGGTTGGTTGTGTGCTGCGTTTCCTGTGTTTTGGGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011542_4

>merge|NZ_CP011542|4|2930351-2930484|CRISPRCasFinder
CGCTGGTTGGTTGTGTGCTGCGTTTCCTGTGTTTTGGGTTTTCAATCCGCAACCCACGTTCCGGTTTCGCAGCACACATTAACTGATGCGTTTCCGCTGGTTGGTTGTGTGCTGCGTTTCCTGCGTTTTGGGTT

>NZ_CP011542|4|4|2930351-2930484|CRISPRCasFinder
CGCTGGTTGGTTGTGTGCTGCGTTTCCTGTGTTTTGGGTT	TTCAATCCGCAACCCACGTTCCGGTTTCGCAGCACACATTAACTGATGCGTTTC
CGCTGGTTGGTTGTGTGCTGCGTTTCCTGCGTTTTGGGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011542.1\|WP_047262888.1\|2940395_2942042_-\|phospho-sugar-mutase	unknown	unknown	gnl\|CDD\|100092
NZ_CP011542.1\|WP_144414218.1\|2928931_2930317_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|367570
NZ_CP011542.1\|WP_052844776.1\|2937656_2938925_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|238038
NZ_CP011542.1\|WP_144414280.1\|2935202_2936783_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP011542.1\|WP_047262876.1\|2922838_2923597_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011542.1\|WP_144414219.1\|2933347_2933545_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011542.1\|WP_047262890.1\|2942710_2943994_-\|thymidine-phosphorylase	unknown	unknown	gnl\|CDD\|180276
NZ_CP011542.1\|WP_047262881.1\|2928019_2928895_+\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115
NZ_CP011542.1\|WP_144414220.1\|2939022_2940354_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP011542.1\|WP_047262880.1\|2927339_2927957_-\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|239473
NZ_CP011542.1\|WP_047262879.1\|2925073_2926471_+\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|236994
NZ_CP011542.1\|WP_047262886.1\|2936779_2937673_+\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|237021
NZ_CP011542.1\|WP_047262878.1\|2924452_2924833_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271373
NZ_CP011542.1\|WP_047262883.1\|2930580_2933205_-\|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|223616
NZ_CP011542.1\|WP_047262877.1\|2923820_2924396_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011542.1\|WP_047262875.1\|2922147_2922732_-\|CarD-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224248
NZ_CP011542.1\|WP_047262889.1\|2942045_2942693_-\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|234784
NZ_CP011542.1\|WP_047263650.1\|2926457_2927186_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273167
NZ_CP011542.1\|WP_047262874.1\|2921368_2922145_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP011542.1\|WP_052844857.1\|2933541_2935086_-\|glycerol-3-phosphate-dehydrogenase/oxidase	unknown	unknown	gnl\|CDD\|223651

Protein	Function_ID	Function_description	E-value
NZ_CP011542.1\|WP_144414218.1\|2928931_2930317_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|367570	pfam03583, LIP, Secretory lipase. These lipases are expressed and secreted during the infection cycle of these pathogens. In particular, C. albicans has a large number of different lipases, possibly reflecting broad lipolytic activity, which may contribute to the persistence and virulence of C. albicans in human tissue.	4.46937e-53
NZ_CP011542.1\|WP_052844776.1\|2937656_2938925_-\|HNH-endonuclease	gnl\|CDD\|238038	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.	9.57238e-09
NZ_CP011542.1\|WP_144414280.1\|2935202_2936783_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	2.1427e-70
NZ_CP011542.1\|WP_047262878.1\|2924452_2924833_-\|hypothetical-protein	gnl\|CDD\|271373	cd11479, SLC5sbd_u3, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain. SLC5 (also called the sodium/glucose cotransporter family or solute sodium symporter family) is a family of proteins that co-transports Na+ with sugars, amino acids, inorganic ions or vitamins. Prokaryotic members of this family include Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. One member of the SLC5 family, human SGLT3, has been characterized as a glucose sensor and not a transporter. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	0.00714714
NZ_CP011542.1\|WP_047262890.1\|2942710_2943994_-\|thymidine-phosphorylase	gnl\|CDD\|180276	PRK05820, deoA, thymidine phosphorylase; Reviewed.	0
NZ_CP011542.1\|WP_047262881.1\|2928019_2928895_+\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	1.38749e-90
NZ_CP011542.1\|WP_144414220.1\|2939022_2940354_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	9.78474e-63
NZ_CP011542.1\|WP_047262880.1\|2927339_2927957_-\|carbonic-anhydrase	gnl\|CDD\|239473	cd03378, beta_CA_cladeC, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	2.45579e-67
NZ_CP011542.1\|WP_047262874.1\|2921368_2922145_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.16378e-92
NZ_CP011542.1\|WP_047262879.1\|2925073_2926471_+\|DNA-repair-protein-RadA	gnl\|CDD\|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0
NZ_CP011542.1\|WP_047262886.1\|2936779_2937673_+\|diacylglycerol-kinase	gnl\|CDD\|237021	PRK11914, PRK11914, diacylglycerol kinase; Reviewed.	7.9464e-91
NZ_CP011542.1\|WP_047262888.1\|2940395_2942042_-\|phospho-sugar-mutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP011542.1\|WP_047262883.1\|2930580_2933205_-\|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|223616	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP011542.1\|WP_052844857.1\|2933541_2935086_-\|glycerol-3-phosphate-dehydrogenase/oxidase	gnl\|CDD\|223651	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	2.02609e-131
NZ_CP011542.1\|WP_047262889.1\|2942045_2942693_-\|deoxyribose-phosphate-aldolase	gnl\|CDD\|234784	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional.	3.2719e-112
NZ_CP011542.1\|WP_047263650.1\|2926457_2927186_-\|hypothetical-protein	gnl\|CDD\|273167	TIGR00601, UV_excision_repair_protein_RAD23_homolog_A, UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	0.00646078
NZ_CP011542.1\|WP_047262875.1\|2922147_2922732_-\|CarD-family-transcriptional-regulator	gnl\|CDD\|224248	COG1329, COG1329, Transcriptional regulators, similar to M. xanthus CarD [Transcription].	6.36664e-62

>NZ_CP011542.1|WP_144414218.1|2928931_2930317_+|alpha/beta-fold-hydrolase
MTLRRTSMRSNRLAFRTIRLLTALTLLLSPSVVNADPLITLTNGINWAATTKTDSWIEAPLDDAFYTPPNDFATNHPNPGDIIRTQPAPHLLNTFGPNFPGYAQKILYTSTDEKGRPVAVSGYIIEPTVPWTGPGPTPTIVFAPGTRGQADICAPSRGTWLLSSVAPTTGAFSINYELPLQYYAAQQGIRVVMTDYIGLGTPGVHTYINAIEQSHAVLDAARATIKAMGVPADSPIGFHGYSQGGGAAAAAAENAASYAPELNVKGTYAGAPPANLEEVFNAVDGSTISGVLGMSINGFAARDDEVRHIFDRYLSDYGREFLATVATSCVPDSAAHYAFVSSEKFTVDGTNLATVVSKEPELQATLKKHRIGLKRPNAPIMVATSIADDIIPTEQAKQLAQDFCALGSAVEFHETHLPRVTPDVASGVNHALQLFGDAPASISYLMDRFNNRPAPTNCGAL
>NZ_CP011542.1|WP_047262881.1|2928019_2928895_+|A/G-specific-adenine-glycosylase
MPQLSPTLIDWFNTNARPIIWRDNPTTAWGILVSEVMSQQTPVRRVEPKWQEWLDRWPTPADLAVAPTDEVLKAWDNLGYPRRALRLKECAQQIVEKHAGIVPNTVEELLALPGIGDYTARAVCAFAYKQRVPVIDVNIRRVISRAYHGTYLPRSNATTKTDLVFLENLLPTTNAASYCTALMELGALVCTPTPDCDKCPINTECAWQLAGCPPPSDEELNQAKRRVQKFVGTDRQVRGIIMAELRTATTPVPKTAIDILWPDNQQLNRALYSLLEDGLIEETNSEFKLPS
>NZ_CP011542.1|WP_047262880.1|2927339_2927957_-|carbonic-anhydrase
MKNLPRDPKLVWEGLLDGNRRFAEGAPLHPNQSVSRREELKLGQSPRAAVLTCGDSRVPVELLFDVGLGDIFTVRTAGEVVDSAVLASLEFAVAGLGVEVMVVLGHESCGAVRATAEVVLEGADVPVGHQRTLVEQIAPSILESKTKGGHTAADFERAHAQAVVAKIMQISPVIAEAVKNGTTAVVAARYRLADGLVETVSTEGI
>NZ_CP011542.1|WP_047263650.1|2926457_2927186_-|hypothetical-protein
MDNHDTVPPADGRLPEIYYRRRRAAAVIAIIVVAVVIVAVLSLVGRDSDSTTTSATSSMTTSAEPTTSRSAAAEASTSSSSASSSKSAEEKAVEISSAPSSTPEPSDELSAKSTCEITDLQVEASADYPSYTPEGMPSFYMKVRNPTAADCEIDISQNSLRFEVYSLDTNQRIWSDIDCNDPAGVGTQTFKAGQERYFRAQWSRTTSSPDGCAVREPVAPGSYYLHTVIGDNASAPFDFNLQ
>NZ_CP011542.1|WP_047262879.1|2925073_2926471_+|DNA-repair-protein-RadA
MAKKVKSVHQCTECGYSSPKWLGRCPECGSWGSMEEHQHAPTGTATQAATTGVLTKGLTPTSPAQPITTIVGSNAQTISTGITELDRVLGTGIVPGSVVLLAGEPGVGKSTLLLEVASRWAKQPAVTGAGNRVALYITAEESAGQVRLRAERTGALHDTLFLSAESNLDVVFGHVDQLKPSLLIVDSVQTMIAAGVEGVAGGVAQSRAVTAALTTLAKTTGIPVLLVGHVTKDGNVAGPRVLEHLVDVVLNFEGDRHSSLRMLRGIKNRFGATDEVGCFEQQSDGIKEVADPSGLFLSHRGSTPDGTAVTVAMDGVRPILAEVQSLVVPTESKNPRRAVTGLDATRVPMVLAVLSARAGRRTHNCEVYVATVGGMKVGEPATDLAIAMATASAMTKKPLPQKTIVVGEVGLAGEIRPVPNLQRRLAEAHRLGYTRAIVPPTDVALPGMTITSVATITEALAVIAN
>NZ_CP011542.1|WP_047262878.1|2924452_2924833_-|hypothetical-protein
MKRVALIVAIGSALMTVGGAVSPISAVAEPMNSVVNPTTVPPVYLETEAHVLSGYERTHAVNPIREGEKPLEVPTGWAAVRTLDKGAWMVHSISLSIIVLGIVLALRVATVNGVIGQRGRRKVKNN
>NZ_CP011542.1|WP_047262877.1|2923820_2924396_+|hypothetical-protein
MEDEHVKPLKISARRGAVICVAAASGFFLAACSAGQITQTSDQVAAVDGASADSEDGTVVVRDVTVHVTKDGEAGVKFTAINQDVTNTTHELKSISVDGTEVTIDGETSIKPQCSLVADIESEMDLLTEPKNVCVSHVITSMENPGFALAGNKEVTFTFDNAEIITMATVSEPVLVSGSQDRETGAEKHSH
>NZ_CP011542.1|WP_047262876.1|2922838_2923597_-|hypothetical-protein
MTNPTPLSPWQEAVARISRTSFQYKVLSATPKGSEMVAIADLSKPATAADLAVRFQNHYQPSHLYKAGSLAFQRAAHRLIGTSVGCWLLDGKFLQYCPEHTHVIVEKGAVTAMHVDVDNPPTLMSADAADVIDRTQKMVIPIMAAFSQATGVGRANLTGNCAATISAVARNIVRQDPHQDPEAMKHRVEELFDFWPGMSRLGWFEIIGGKLFYYRNSCCHWHSTGADNCDWCTKRPVMQRRQSFAQSVSQTS
>NZ_CP011542.1|WP_047262875.1|2922147_2922732_-|CarD-family-transcriptional-regulator
MEFKVGDTVVYPHHGAAVIQDIEQREMGGETLDFLVLQIHQSDLVVRLPAKNVELVGVRDVVDGEGLQTVFSFLRETGVEEAGNWSRRYKANLERLASGDVNKVAEVVRDLWRRDEGKGLSPGEKRMLAKARQVLVGELALATIKDEAKADELLAQVDATIERHRALGIDDAEEKKPLIDDDLDLDDLNFDDEE
>NZ_CP011542.1|WP_047262874.1|2921368_2922145_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MDSASVTRQFPSPGKRRVIALIAAAGQGSRLGARLPKAYVELRGKTLLERSIQAMMTSEIVDEIVVLISPEMLEYAQRIVDSAKQFDPTIPIRLVFGGGERADSVWCGLQAITDIEAVVLIHDAARALTPPGMIARVARSVLSGMPAVIPVLPVADTIKQVSADHVVSTPVRSELRAVQTPQGFDLEMLREANQRYFAQDPPSFEATDDASLMEWCGHEVRCVAGDPMAFKITTPIDYALAKAITDAVEPTIFEVPHE
>NZ_CP011542.1|WP_047262883.1|2930580_2933205_-|ATP-dependent-Clp-protease-ATP-binding-subunit
MFERFTDRARRVIVLAQEEARGLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLEAVRQEVEEIIGQGTEPPVGHIPFTPRAKKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLVKLGADLPRVRQQVIQLLSGYEGGDSPESEGNDAVGAGASPSSGGLGAGAGSRGGRGGAGERSNSLVLDQFGRNLTQAAKEGKLDPVVGREQEIERIMQVLSRRTKNNPVLIGEPGVGKTAVVEGLALDIVNGKVPETLKNKQVYSLDLGSLVAGSRYRGDFEERLKKVLKEINQRGDIILFIDEIHTLVGAGAAEGAIDAASLLKPKLARGELQTIGATTLDEYRKHIEKDAALERRFQPVNVPEPSVELTIDILKGLRDRYEAHHRVSITDGALAAAANLSDRYINDRFLPDKAVDLIDEAGARMRIKRMTAPEGLREVDERIAAVRREKEAAIDAQDFEKAAGLRDKERKLGEERAEKEKQWRSGELEDIAEVGEEQIAEVLAHWTGIPVFKLTEEESSRLLHMEEELHKRIIGQDDAVKAVSRAIRRTRAGLKDPRRPSGSFIFAGPSGVGKTELSKALANFLFGEDDALIQIDMGEFHDRFTASRLFGAPPGYVGYEEGGQLTEKVRRKPFSVVLFDEIEKAHKEIYNTLLQVLEDGRLTDGQGRLVDFKNTVLIFTSNLGTQDISKAVGMGFSAVGEQDASGQYERMKNKVHDELKKHFRPEFLNRIDDIVVFHQLTQEQIVEMVDLLVGRVEKALAAKDMGIELTDLAKNLLAKRGFDPVLGARPLRRTIQREIEDALSEKILFGEVGAGEIITVDVTGWDGESKDTDKAEFTFTPRPKPLPDFVGEMSTAAAEPVAEPSPEV
>NZ_CP011542.1|WP_144414219.1|2933347_2933545_-|hypothetical-protein
MMKRWRNRFVSRMQVDHPVLSAKLVGVVMRASKSKKPKAVAPASPRRFPKRTSGIEAANFAARVP
>NZ_CP011542.1|WP_052844857.1|2933541_2935086_-|glycerol-3-phosphate-dehydrogenase/oxidase
MFSTVLNAQVRRDWWAELEKHPKVDVLVVGAGITGVGVALDAATRGLKVLVVDQQDLAHGTSRFSSKLVHGGLRYLAKGEVRIAFHSAKERGLLMEVLAPHLVSALPQVTLVGPDTNLFQKAAVRLGFWAGDVLRLMAGTKSSTLPRSRFVGRREALALCPAANPNGLRGAFVNFDGQMIDDARLVTAVARTAVGAGAKVLTYVSAHQVTGTGTELVDEKTGARLNISAKAVVNAAGVWAGQVDPGIKLRTSRGTHLVIPAHRLGNPTGALTVPLPGSVSRFVFAMPEQLGRVYLGLTDVELDGEIPDVPDAPKEDEEFLLAAFNRALATDLTEADVVGAFAGLRPLIDSGESKTSADLSRKHAVLESETGVISVVGGKFTEYRLMAQETVDEVIRRRQLPAGPCRTHAYPLVGAPGHCESQGKTTADHTGLPESLIARFGLEARTVVDRATIDRPLEKVAGLDVTRAEVEFAITHEGALGADDVLDRRTRIGLVPVDREAALAEVAAIVAEVS
>NZ_CP011542.1|WP_144414280.1|2935202_2936783_+|FAD-binding-oxidoreductase
MHFNLWGTPEEAKPLSESMLKLLKPTLGLSPKPATHLNLEDITLTPSKLSESDLAELATIVNPAQISTDDTQRAPRARGKSYPDLIEWRSGTPITAPDAVIAPGSEEEILQLLRWCTENHVAVVPFGGGTSVVGGITPLAGDHRAVLSIDLALFDDIYDVDETSMVAEVGAGLTGPHAELLLEEWGVQIGHYPQSFPYATIGGYAATRSSGQSSAGYGRFDEMVCGLTVVTPTGVIRLGDRSPASAAGPDWRELFLGSEGIFGIITRVKLRVHPIPEAKYYEAFSFRTFAAGAKALRLVEQTGTGPTVIRLSDEIETALNLSSTSNIGAESPSGCLCLTMFEGTKEHAAARHKETRELILKNGGRSLGENPVRIWEQGRFAAPVFRDALLDAGALCETLETATYWGNVEKLKTAVGQALVDALADADTMAIIMCHISHVYPEGCSLYFTVVAGQTTNPREQWAQAKKAASQAIIDAGGTITHHHGVGTDHASYMGKETNPLTTTMFSAIKTALDPAGILNPGKLQP
>NZ_CP011542.1|WP_047262886.1|2936779_2937673_+|diacylglycerol-kinase
MKRIALLTNPAAGKGTATEAMHKARRRFQAHGIDVIGISGATKQSSSELCNRALEENIDALVVCGGDGMISLALQEQAGTHIPLGIIPAGTGNDHARALGIPLDAEEAADVVATGTPSITDLGVMKQGDQKRIFGTVACAGFDSLVNDRASRLPWPRGRSRYVAAAALEFVRFHAMEMIITFDDGSPQTFNATSLAIGNTKSYGGGMLICPSASPYDGLFDVTIIEKMGRFDAMRKFPKIFSSEIDQVDSVRTLKARKVLVEMPVPVAAYADGERFTLLPVECSVLESQGCFITPAV
>NZ_CP011542.1|WP_052844776.1|2937656_2938925_-|HNH-endonuclease
MNLPQSLNKYAAALAEGAAILRAIKDMGVRADALAAILGTSKSEASHLIRDAALLTDADLNTASKKQLPLAKLTTIAKGIRTAANKDIDHAAFKTELLNTADQLTVDELKRFITSYLETARSISPRKSHLRFSATPDIDGMKHALWKLPAAQLTRIQVMLKEDALALLHSRHAVDLAEGYAIAAYNRIVGGVAATDADPLDLRHNVTLLVPLAQATCMTDGRIVNSDGELVNIKDIVTHTINPHGWAVPMLPTEDGGTVCLEPIPIQRRANASQRVLSILEHLVCAHPDCSIPAAICDIHHIISYASGGPTEPWNLAPLCRYHNKLNDDDRNHPKNGHITHIKGRNLVALHQTDGTIRANLHPAIRRGAKAQADAILNADTRTAHNKHSCACHTWYPEAKLQVAQLDIQDMHNRAQTIKQQE
>NZ_CP011542.1|WP_144414220.1|2939022_2940354_-|DHA2-family-efflux-MFS-transporter-permease-subunit
MTRETTLLIAVLVAATAVMILNETIMTVALPAVMEDFHIAPTQAQWLTTGFLLTMAVVIPTTGFIVQRFSTRVVFLAATILFLSGTIVAATGLNFPVLLFGRVIQASGTALVFPLLMSTLMTVVPAQRRGEMMGWITIVIAMAPAFGPTTGGILLQFFRWNFLFWFMTPIVLTLMIAGYLLVRNVGENVKAPLDVISVVLSALGFGGLIYALSGGGLVVGAAAGVVIALFIWRQLRRAAAGTALLDLRVFRLSTFTHCVVVVVLIMALFLGSITILPIYLQQGLLASTVVSGLAIMPNGLFQAFAAPIVGRKYDQVGIKPLVRPGLSCLIAGLALVTLTAYLVTTPLLGIVLSATGFAIVAVGVSLCMGPLMTTALGSLAPDQYPHGSAILSALQQFAGAVGTAILIAAHSFGTTENYGAFLAFATATFMAIIATIYGWKKLH
>NZ_CP011542.1|WP_047262888.1|2940395_2942042_-|phospho-sugar-mutase
MSDLIATAKAWIAGDPDPATQQELRDLISAGDHAELARRFTGPLAFGTAGLRGKVEAGESRMNQATVTRTSAGLAKYLNQRVTTPKVVVGCDARHGSAQFHAATCETLAAAGCDVIALPPQLPTPITAFATRHFNADAGVMITASHNPPQDNGYKVYLGGRLVSDDAATGVQLISPADHDITTCINTTPDANQIPRSAEGITWVDDDIVTKYLQQTIGHLPPQTGTDADMPIVITAMHGVGGAVVTQALNKAGFSTIIPVAQQIHPDPDFPTVDFPNPEEKGAMELAYLTADSHDAELILALDPDADRCSVAIKETGGWRQLTGDEVGAILGESIARENTGSGQTLACSIVSSRLLSEIAKRHGLEYAATLTGFKWIARTPNLLFGYEEALGYCCDPAAVRDKDGITASVKIALIAAGLRRKARSLSDFLAEIDDTYGVYATSPLTFRMDTPEAITQALERLSSQPPSQLAGAAVCECVDLAAGFAGLPPTTGLWLKTQANDRIVVRPSGTEPKLKCYLEVVTTERAVATDRLAQLQIELAKALGLAG
>NZ_CP011542.1|WP_047262889.1|2942045_2942693_-|deoxyribose-phosphate-aldolase
MTPAELARYIDHTVLKPETTSEDIRTLIDEAAALGTYSICISPSHLPISVPEPVKVATVCGFPSGSHHPSVKAHEAALAVAHGADEVDMVINIAEAKSGNFQAVETDIRTVREAIPGALLKVIIESAALTDEEIIACCKAAESAGADYVKTSTGFHPAGGASVHAVTLMAQTVGGRLGVKASGGIRDTATALAMIEAGATRLGCSATTAILNGMD
>NZ_CP011542.1|WP_047262890.1|2942710_2943994_-|thymidine-phosphorylase
MAEQFDVVDVIRTKRDGGELSTDQINWVIDAYTRGVVGDEQMAALNMAIFIRDMGRREIVDWTNAMINSGERMNFTGLGKPTTDKHSTGGVGDKVTLPLGPLVSSYGVAVPQLSGRGLGHTGGTLDKLEAIPGWKADMSNDRMMEILKDSGAVVAAAGAGLAPADKKIYALRDITATVDCIPLIASSIMSKKIAEGTASLVLDVKVGSGAFMKDIDTARQLAQTMVDLGKDAGVDTRALLTDMSTPLGRKIGNGLEVEESVEVLAGGGPQDLIDITCELARNMLDMCGIPDADVEEALKDGRAMDSWRKMIRAQGGDPDAPLARAPHTHEVLADADGYLTELDALALGVGSWRLGAGRARKEDPVQLTAGIEVHADLGQKVTKGQKLLTLHTETPDRFERALESILPGIVIGDAPTAPRDIILDKIL

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Crispr_ID: NZ_CP011542_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011542_5

2949074-2949216

Orphan

Consensus_repeat	Method
CTTTTCAACCGGCGTGCCACAACCTACACCACCACACAACGCAGCACACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011542_5

>merge|NZ_CP011542|5|2949074-2949216|CRISPRCasFinder
CTTTTCAACCGGCGTGCCACAACCTACACCACCACACAACGCAGCACACACCACGCAGCGCAACCCCACACCTTACCGTGTGCTGCGTTCCCACTTTTCAACCGGCGTGCCACAACCTACACCACCACGCAACGCAGCACACA

>NZ_CP011542|5|5|2949074-2949216|CRISPRCasFinder
CTTTTCAACCGGCGTGCCACAACCTACACCACCACACAACGCAGCACACA	CCACGCAGCGCAACCCCACACCTTACCGTGTGCTGCGTTCCCA
CTTTTCAACCGGCGTGCCACAACCTACACCACCACGCAACGCAGCACACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011542.1\|WP_083987759.1\|2953031_2953802_-\|dihydropteroate-synthase	unknown	unknown	gnl\|CDD\|238380
NZ_CP011542.1\|WP_047263657.1\|2952169_2952652_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|223872
NZ_CP011542.1\|WP_047262894.1\|2950663_2951695_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236768
NZ_CP011542.1\|WP_052844776.1\|2937656_2938925_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|238038
NZ_CP011542.1\|WP_083987586.1\|2954404_2956789_-\|ATP-dependent-zinc-metalloprotease-FtsH	unknown	unknown	gnl\|CDD\|273520
NZ_CP011542.1\|WP_047262891.1\|2944650_2945865_+\|transporter	unknown	unknown	gnl\|CDD\|224883
NZ_CP011542.1\|WP_047262898.1\|2953835_2954405_-\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|236472
NZ_CP011542.1\|WP_047262890.1\|2942710_2943994_-\|thymidine-phosphorylase	unknown	unknown	gnl\|CDD\|180276
NZ_CP011542.1\|WP_047262895.1\|2951705_2952173_-\|DUF3180-domain-containing-protein	unknown	unknown	gnl\|CDD\|378650
NZ_CP011542.1\|WP_047262893.1\|2950031_2950658_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011542.1\|WP_047263653.1\|2944233_2944638_+\|cytidine-deaminase	unknown	unknown	gnl\|CDD\|223372
NZ_CP011542.1\|WP_047263655.1\|2946441_2948016_-\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NZ_CP011542.1\|WP_144414220.1\|2939022_2940354_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP011542.1\|WP_047263656.1\|2949221_2949977_-\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|223491
NZ_CP011542.1\|WP_047262888.1\|2940395_2942042_-\|phospho-sugar-mutase	unknown	unknown	gnl\|CDD\|100092
NZ_CP011542.1\|WP_047262892.1\|2948107_2949001_+\|carbohydrate-kinase	unknown	unknown	gnl\|CDD\|238572
NZ_CP011542.1\|WP_047262886.1\|2936779_2937673_+\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|237021
NZ_CP011542.1\|WP_047262889.1\|2942045_2942693_-\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|234784
NZ_CP011542.1\|WP_047262896.1\|2952651_2953023_-\|dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|376737
NZ_CP011542.1\|WP_047262899.1\|2956940_2957537_-\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223707

Protein	Function_ID	Function_description	E-value
NZ_CP011542.1\|WP_083987759.1\|2953031_2953802_-\|dihydropteroate-synthase	gnl\|CDD\|238380	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.	1.04288e-97
NZ_CP011542.1\|WP_047263657.1\|2952169_2952652_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|223872	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism].	2.66794e-48
NZ_CP011542.1\|WP_047262894.1\|2950663_2951695_-\|hypothetical-protein	gnl\|CDD\|236768	PRK10819, PRK10819, transport protein TonB; Provisional.	0.00031243
NZ_CP011542.1\|WP_052844776.1\|2937656_2938925_-\|HNH-endonuclease	gnl\|CDD\|238038	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.	9.57238e-09
NZ_CP011542.1\|WP_083987586.1\|2954404_2956789_-\|ATP-dependent-zinc-metalloprotease-FtsH	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP011542.1\|WP_047262891.1\|2944650_2945865_+\|transporter	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	1.00389e-151
NZ_CP011542.1\|WP_047262898.1\|2953835_2954405_-\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|236472	PRK09347, folE, GTP cyclohydrolase I; Provisional.	1.57183e-118
NZ_CP011542.1\|WP_047262890.1\|2942710_2943994_-\|thymidine-phosphorylase	gnl\|CDD\|180276	PRK05820, deoA, thymidine phosphorylase; Reviewed.	0
NZ_CP011542.1\|WP_047262895.1\|2951705_2952173_-\|DUF3180-domain-containing-protein	gnl\|CDD\|378650	pfam11377, DUF3180, Protein of unknown function (DUF3180). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.	2.63438e-29
NZ_CP011542.1\|WP_047263653.1\|2944233_2944638_+\|cytidine-deaminase	gnl\|CDD\|223372	COG0295, Cdd, Cytidine deaminase [Nucleotide transport and metabolism].	6.7527e-45
NZ_CP011542.1\|WP_047263655.1\|2946441_2948016_-\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP011542.1\|WP_144414220.1\|2939022_2940354_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	9.78474e-63
NZ_CP011542.1\|WP_047263656.1\|2949221_2949977_-\|pantoate--beta-alanine-ligase	gnl\|CDD\|223491	COG0414, PanC, Panthothenate synthetase [Coenzyme metabolism].	2.29954e-41
NZ_CP011542.1\|WP_047262888.1\|2940395_2942042_-\|phospho-sugar-mutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP011542.1\|WP_047262892.1\|2948107_2949001_+\|carbohydrate-kinase	gnl\|CDD\|238572	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.	3.5012e-64
NZ_CP011542.1\|WP_047262886.1\|2936779_2937673_+\|diacylglycerol-kinase	gnl\|CDD\|237021	PRK11914, PRK11914, diacylglycerol kinase; Reviewed.	7.9464e-91
NZ_CP011542.1\|WP_047262889.1\|2942045_2942693_-\|deoxyribose-phosphate-aldolase	gnl\|CDD\|234784	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional.	3.2719e-112
NZ_CP011542.1\|WP_047262896.1\|2952651_2953023_-\|dihydroneopterin-aldolase	gnl\|CDD\|376737	pfam02152, FolB, Dihydroneopterin aldolase. This enzyme EC:4.1.2.25 catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate.	1.71795e-47
NZ_CP011542.1\|WP_047262899.1\|2956940_2957537_-\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|223707	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism].	3.70677e-82

>NZ_CP011542.1|WP_047262892.1|2948107_2949001_+|carbohydrate-kinase
MITVCGEGLVDLVPMSEGAGSTDCRLSPLSPALGGGPFNVAIAAARQDAPTQLLSRLSRDNFGATLVDALQAEGVGTSLIQRGDEPTTLAVTSRNLDGSAEYTFYLEGTADRFVDPPAEIATDIACFGTVSLALEPGASRLASLLHTLSANGTFIALDPNIRPFYATDAHRDFIYSLLHDVDLLKLSDEEDEFLHSPSAPIKMITRGGAGIEVIVGGETVMASTPAITVADTIGAGDTVMGCVIAEIHRLCGGKNVREQAARFTLAQWHDIAAYAAKAAAINCTRYGANPPRRNELI
>NZ_CP011542.1|WP_047263655.1|2946441_2948016_-|lysine--tRNA-ligase
MTDAKQTKTPDVPEQLRIRREKRDKLLNSGREAYPVTVDRTTSIADLRQKFQVIAEGEQPGSEPGVTYLRAGDETSVEVAIAGRVLFMRNTGKLCFAAIQEGNGTQIQAMLSLAVVGEELLTSWKADVDLGDIVSVRGKVIASKRGELSILVSTWHMAAKAIRPLPVAFADMSEDTRVRHRYTDLIMREKARENALTRIKVMRALRNYLESQGFLEVETPMLQTLHGGAAARPFMTHSNALDIDLYLRIAPELYLKRCVVGGMERVFEVNRNFRNEGVDSSHSPEFAMLETYQAWGTYDDGAELMKNLVQSVAMEVFGSTTVTLADGTEYDLGGEWQSIEMYPSLNEALQRKFPGQPEVTIHSTVEELKAIAEVIGLAVPAKGGWGHGKLVEEIWETLCEDQLHGPIFVRNFPVETSPLTRQHRSEPGVTEKWDLYVRGFELATGYSELIDPVIQRERFEDQARLAAGGDDEAMVLDEDFLAAMEQGMPPTAGCGMGIDRLLMALTGLGIRETVLFPMVKPEQK
>NZ_CP011542.1|WP_047262891.1|2944650_2945865_+|transporter
MDRFQGIIGIIAIFAILIIFSSARSQIKWRTLGVGLALQICFALLVLKWDVGFRALKSVSAGLEKLIDFTNEGTSFVFGPLFGEKVGFIFALNVLPVIIFLGAIIGALYYLRVLQWFVEIVGTALNKIMGTSKVESVWASTVIFLGQSEAPLVIKPWLPKLTRSELFACMSGGFASVAGSTLVGYSLLGAPLPYLLAASIMNAPASLMVAKALMPETEESQVNANVRNMRDEKSKNIIDAIGAGAISGGHIAVTVACLLIAFIATITMISAILGGIGSWFGQDNWSLEGLFGVIFAPLAWAIGVPWEEAGLVGNFIGQKTIINEFVGYTSFSQHVETLSDKSIMLTSFALAGFANISSIAIQIGSFGALVPERRSEVASLGLKALFAGFCTNMLNAAIVGVIAF
>NZ_CP011542.1|WP_047263653.1|2944233_2944638_+|cytidine-deaminase
MTTDMELLKLARTAASHAYAPYSKFSVGSAIRMSDGTIYSGCNVENASYGLTICAERNGITTMIAKTDAPEQRVIDTVAIVSPNATRCWPCGACLQVLREFHCRRVIVEDPAGQPTTVLFDDLLPYSFGPEHIA
>NZ_CP011542.1|WP_047262890.1|2942710_2943994_-|thymidine-phosphorylase
MAEQFDVVDVIRTKRDGGELSTDQINWVIDAYTRGVVGDEQMAALNMAIFIRDMGRREIVDWTNAMINSGERMNFTGLGKPTTDKHSTGGVGDKVTLPLGPLVSSYGVAVPQLSGRGLGHTGGTLDKLEAIPGWKADMSNDRMMEILKDSGAVVAAAGAGLAPADKKIYALRDITATVDCIPLIASSIMSKKIAEGTASLVLDVKVGSGAFMKDIDTARQLAQTMVDLGKDAGVDTRALLTDMSTPLGRKIGNGLEVEESVEVLAGGGPQDLIDITCELARNMLDMCGIPDADVEEALKDGRAMDSWRKMIRAQGGDPDAPLARAPHTHEVLADADGYLTELDALALGVGSWRLGAGRARKEDPVQLTAGIEVHADLGQKVTKGQKLLTLHTETPDRFERALESILPGIVIGDAPTAPRDIILDKIL
>NZ_CP011542.1|WP_047262889.1|2942045_2942693_-|deoxyribose-phosphate-aldolase
MTPAELARYIDHTVLKPETTSEDIRTLIDEAAALGTYSICISPSHLPISVPEPVKVATVCGFPSGSHHPSVKAHEAALAVAHGADEVDMVINIAEAKSGNFQAVETDIRTVREAIPGALLKVIIESAALTDEEIIACCKAAESAGADYVKTSTGFHPAGGASVHAVTLMAQTVGGRLGVKASGGIRDTATALAMIEAGATRLGCSATTAILNGMD
>NZ_CP011542.1|WP_047262888.1|2940395_2942042_-|phospho-sugar-mutase
MSDLIATAKAWIAGDPDPATQQELRDLISAGDHAELARRFTGPLAFGTAGLRGKVEAGESRMNQATVTRTSAGLAKYLNQRVTTPKVVVGCDARHGSAQFHAATCETLAAAGCDVIALPPQLPTPITAFATRHFNADAGVMITASHNPPQDNGYKVYLGGRLVSDDAATGVQLISPADHDITTCINTTPDANQIPRSAEGITWVDDDIVTKYLQQTIGHLPPQTGTDADMPIVITAMHGVGGAVVTQALNKAGFSTIIPVAQQIHPDPDFPTVDFPNPEEKGAMELAYLTADSHDAELILALDPDADRCSVAIKETGGWRQLTGDEVGAILGESIARENTGSGQTLACSIVSSRLLSEIAKRHGLEYAATLTGFKWIARTPNLLFGYEEALGYCCDPAAVRDKDGITASVKIALIAAGLRRKARSLSDFLAEIDDTYGVYATSPLTFRMDTPEAITQALERLSSQPPSQLAGAAVCECVDLAAGFAGLPPTTGLWLKTQANDRIVVRPSGTEPKLKCYLEVVTTERAVATDRLAQLQIELAKALGLAG
>NZ_CP011542.1|WP_144414220.1|2939022_2940354_-|DHA2-family-efflux-MFS-transporter-permease-subunit
MTRETTLLIAVLVAATAVMILNETIMTVALPAVMEDFHIAPTQAQWLTTGFLLTMAVVIPTTGFIVQRFSTRVVFLAATILFLSGTIVAATGLNFPVLLFGRVIQASGTALVFPLLMSTLMTVVPAQRRGEMMGWITIVIAMAPAFGPTTGGILLQFFRWNFLFWFMTPIVLTLMIAGYLLVRNVGENVKAPLDVISVVLSALGFGGLIYALSGGGLVVGAAAGVVIALFIWRQLRRAAAGTALLDLRVFRLSTFTHCVVVVVLIMALFLGSITILPIYLQQGLLASTVVSGLAIMPNGLFQAFAAPIVGRKYDQVGIKPLVRPGLSCLIAGLALVTLTAYLVTTPLLGIVLSATGFAIVAVGVSLCMGPLMTTALGSLAPDQYPHGSAILSALQQFAGAVGTAILIAAHSFGTTENYGAFLAFATATFMAIIATIYGWKKLH
>NZ_CP011542.1|WP_052844776.1|2937656_2938925_-|HNH-endonuclease
MNLPQSLNKYAAALAEGAAILRAIKDMGVRADALAAILGTSKSEASHLIRDAALLTDADLNTASKKQLPLAKLTTIAKGIRTAANKDIDHAAFKTELLNTADQLTVDELKRFITSYLETARSISPRKSHLRFSATPDIDGMKHALWKLPAAQLTRIQVMLKEDALALLHSRHAVDLAEGYAIAAYNRIVGGVAATDADPLDLRHNVTLLVPLAQATCMTDGRIVNSDGELVNIKDIVTHTINPHGWAVPMLPTEDGGTVCLEPIPIQRRANASQRVLSILEHLVCAHPDCSIPAAICDIHHIISYASGGPTEPWNLAPLCRYHNKLNDDDRNHPKNGHITHIKGRNLVALHQTDGTIRANLHPAIRRGAKAQADAILNADTRTAHNKHSCACHTWYPEAKLQVAQLDIQDMHNRAQTIKQQE
>NZ_CP011542.1|WP_047262886.1|2936779_2937673_+|diacylglycerol-kinase
MKRIALLTNPAAGKGTATEAMHKARRRFQAHGIDVIGISGATKQSSSELCNRALEENIDALVVCGGDGMISLALQEQAGTHIPLGIIPAGTGNDHARALGIPLDAEEAADVVATGTPSITDLGVMKQGDQKRIFGTVACAGFDSLVNDRASRLPWPRGRSRYVAAAALEFVRFHAMEMIITFDDGSPQTFNATSLAIGNTKSYGGGMLICPSASPYDGLFDVTIIEKMGRFDAMRKFPKIFSSEIDQVDSVRTLKARKVLVEMPVPVAAYADGERFTLLPVECSVLESQGCFITPAV
>NZ_CP011542.1|WP_047263656.1|2949221_2949977_-|pantoate--beta-alanine-ligase
MIARVFRGKGRPVVLVPLQTHFHAGHAALLRAARRIPGAVTIVAAHPSIDRRMLVDAHIDAVFRYTDETLWPNGKRTTIAVADRGMLPPAHLSADATRILALINAVGCSDVILGENNYELLVTVQHAITDLHFPTTVHSVPTVRMPGGVAVSAKNLDIPASSQEQLLALSAALTAGAHASEHGTGAVLAAVRSVLSAANLTADYIELFAPTLAPAPETGDARLFAAVTINGQQFHDSVGLPLGIGFKNLEA
>NZ_CP011542.1|WP_047262893.1|2950031_2950658_-|hypothetical-protein
MNESPPTLNIVALGSGDFVTQLRASRHQMCTIKAIDSADMVVIDSAVATEVTTYLDRVLNHARPGLMVVVVSLSHDLASLAALNAAGCMTALALWNGDKNWAVISDDEIMAVVLELLASELHVGFRSIPAAQQATYVAGVLLKHLSQYVAAHAVRLQSESAPMPEPIPAFLLDEQVVARSLGTLADSDLSAVLAAMVNVAHNPHPKEN
>NZ_CP011542.1|WP_047262894.1|2950663_2951695_-|hypothetical-protein
MSVLPPETNDGNAASRDRGQVLLIVLVVLAIGASITTMVTGNVSVLKLGMLAALWAAAIGAVLTYRYRNELGKQREMHEAELYQVQLEFDAEQSARELEMEQRITERTAAASAESAATLAEIKQQLEQLRAQLEDLRGYSLEEPTMIRAEARRIREIETTINPQPSRFATDFKETPMTATSVSSTGEMPIVGPAVGYVPEPTPVKHYSEFPVGARITPPEPEPEPEPIPSPQPEPIIAPPLPPRFESTVEPKPEPSSGTQDLEFSVPQFRDLYGSMGTTSTEPAGRRRNPAEEPAPSQGFESHGSHRKPETPQSDEAESPRRRRRRDENSASVSVADLLKRQH
>NZ_CP011542.1|WP_047262895.1|2951705_2952173_-|DUF3180-domain-containing-protein
MKPTSVTALVGTWGLFAAATLIIVQQFYSLMTAVPASVAITLWAMAGLCVLLAWTVRGKISDNRIGFDRSQLEPTKVAYFLVIGKTSAWTGAIFAGIYTGMAVYVIPRMSFLLSAGEDGPRVIAAGLGGVALSAAGLWLERSCTAPPPQDGEAVG
>NZ_CP011542.1|WP_047263657.1|2952169_2952652_-|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MRAVLSIGSNMDDRYELLQTVFDEFAGEIVARSPVFSTPPWGVTDQDEFLNAVVIVEVDQSPMELLRRGQRLEEAAERVRIKRWGPRTLDVDVVQVIDESGHEVLCDDPMLLLPHPWAHHRAFVLVPWLAADPDAQLLGTPVARIVEKLDRSDVEAVVAV
>NZ_CP011542.1|WP_047262896.1|2952651_2953023_-|dihydroneopterin-aldolase
MADRIELSGLKAYGYHGVFPEEKRVGQEFQVDVTCWLDFSLAAETDDLATTINYAELAQIAHDVVTGPSCDLIERVAGLIADEIMATFDQLFAVEVTVHKPHAPIPMEFSDVAVVARRSRGRS
>NZ_CP011542.1|WP_083987759.1|2953031_2953802_-|dihydropteroate-synthase
MGIVNVTSDSFSDGGKFIDFDAAISHAHSLIDHGADIIDVGGESTRPGAVRVPEEIEKRRVLPVISELANEGITTSVDTMRASVAEACVAAGVSMINDVSGGAADPRMLKVMAESQIPVCLMHWQTDRFGDAAGAHHGVHVVEEVTAKLHSLIDSALEAGVNPSQICLDPGLGFAKTAANNWALLHGLDRLADIGFPLLVGASRKRFLAELGPQVDIATAAVTAIVAAQGVWGVRVHDVVSSRSAVDVAARIRRGE
>NZ_CP011542.1|WP_047262898.1|2953835_2954405_-|GTP-cyclohydrolase-I-FolE
MGSFDQARAEAAVRELLLAVGEDPDREGLRETPARVARAYAEIFAGLHSDPTEVLNKTFNEDHRELVLVKDIPIYSTCEHHLVPFFGKAHIGYIPGASGKVTGLSKLARLVDLFAKRPQVQERLTSQVADALVDKLEAHSVIVVIECEHLCMAMRGIRKPGASTTTSAVRGGFKRDAASRAEALSLIWG
>NZ_CP011542.1|WP_083987586.1|2954404_2956789_-|ATP-dependent-zinc-metalloprotease-FtsH
MKNNKIIQIAAITAIVLISLYLISLFGSSTRGFVKVETSVAITQLEKNNVAEANIDDREQRLRLKLKSGIEHEGKKDVKEIMAQYPARTSPEIFAKVSESKTDKFTTNVTQDNFLMQMLGYILPMLIVFGLIMWMFSRMQGGGMGVFGFAGSKAKELTKDMPTNTFADVAGADEAVDELQEIKDFLQDPTRYEALGAKIPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFKQARENSPCIIFVDEIDAVGRQRGSGMGGGHDEREQTLNQLLVEMDGFGDREGVILMAATNRPDILDQALLRPGRFDRQIPVTNPDLKGREQILEVHAKGKPFAKDADLKALARRTAGMSGADLANVLNEAALLTARIGGNVITADALEEATDRVIGGPRRSSKVISEKEKKVTAYHEGGHTLAAWALKNIERVYKVTILARGKTGGHAMTAQEDDKGMYNRDELFARLVFAMGGRAAEELVFGEPTTGASADIEMATKIAKAMLVEYGMSPSLGMVKYGDEQGDPFSGRPGQGSLEYSPETAAQIDREMKYLMDKAHTEAYNILAEYRDYLDLLAEKLLEKETLRRPDLEALFDGITPREVGEVFPDEDVRFPRQAGREPVKTPTELAIERGEEPPKPFSLLEASKAARAKRAEELAAGQMAVPQPTPPTAAQSAPQSGPQDASQAAPGAVGPNPKAYPTEMVPVVPSDPDQEQTRYAGTPPPAGWTVPGDKATNPYASQTTPQPQPQPVAPTEEIGFRLPENERTENPWNDEQSKDEEKN
>NZ_CP011542.1|WP_047262899.1|2956940_2957537_-|hypoxanthine-phosphoribosyltransferase
MTEMHSAKDFNVPPHRYGDDVEAVLIGEDLLRSRIQEMADKISQRYQDAADDLILVCVLKGAVFFITDFARALSIPSQVEFMAVSSYGNATTSSGVVRILKDLDRDIEGRDVLIVEDIIDSGLTLSWLVRNLKNRKPKSLEVVTLLRKPEAVTAKVDLLDIGFDIPNEFVIGYGLDYAERYRDLPYVGTLHPNVYSDA

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Crispr_ID: NZ_CP011542_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011542_6

2985665-2985743

Orphan

Consensus_repeat	Method
TCCCTTACAACCCCTTCGAAGACGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011542_6

>merge|NZ_CP011542|6|2985665-2985743|CRISPRCasFinder
TCCCTTACAACCCCTTCGAAGACGACACCCCAACCAGCCCAACCACAGCGGCCATCCCCTACAACCCCTTCGAAGACGA

>NZ_CP011542|6|6|2985665-2985743|CRISPRCasFinder
TCCCTTACAACCCCTTCGAAGACGA	CACCCCAACCAGCCCAACCACAGCGGCCA
TCCCCTACAACCCCTTCGAAGACGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011542.1\|WP_047262929.1\|3000361_3000796_+\|YbjN-domain-containing-protein	unknown	unknown	gnl\|CDD\|371210
NZ_CP011542.1\|WP_047263664.1\|2977421_2977646_-\|DUF3263-domain-containing-protein	unknown	unknown	gnl\|CDD\|378688
NZ_CP011542.1\|WP_047262928.1\|2995740_2997030_-\|adenylosuccinate-synthase	unknown	unknown	gnl\|CDD\|234904
NZ_CP011542.1\|WP_047262927.1\|2994501_2995710_-\|formate-dependent-phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|236454
NZ_CP011542.1\|WP_047262916.1\|2979976_2981455_+\|cardiolipin-synthase	unknown	unknown	gnl\|CDD\|234967
NZ_CP011542.1\|WP_052844784.1\|2997941_3000137_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011542.1\|WP_047262925.1\|2992254_2993637_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|215457
NZ_CP011542.1\|WP_047262915.1\|2978250_2979207_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP011542.1\|WP_047262918.1\|2982243_2983173_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213235
NZ_CP011542.1\|WP_047262926.1\|2993998_2994505_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225064
NZ_CP011542.1\|WP_047262924.1\|2990588_2991962_-\|phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|235537
NZ_CP011542.1\|WP_047262917.1\|2981479_2982241_-\|multidrug-ABC-transporter-permease	unknown	unknown	unknown
NZ_CP011542.1\|WP_047262920.1\|2984651_2985635_+\|glutamate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270408
NZ_CP011542.1\|WP_052844783.1\|2997267_2997945_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011542.1\|WP_052844858.1\|2983314_2984652_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011542.1\|WP_047262914.1\|2977662_2978247_+\|peptide-deformylase	unknown	unknown	gnl\|CDD\|234668
NZ_CP011542.1\|WP_052844782.1\|2987985_2989167_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|238038
NZ_CP011542.1\|WP_047262923.1\|2989398_2990589_-\|acetate-kinase	unknown	unknown	gnl\|CDD\|234680
NZ_CP011542.1\|WP_047263665.1\|2979221_2979980_+\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|197320
NZ_CP011542.1\|WP_083987588.1\|2976813_2977416_-\|LytR-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|379163

Protein	Function_ID	Function_description	E-value
NZ_CP011542.1\|WP_047262929.1\|3000361_3000796_+\|YbjN-domain-containing-protein	gnl\|CDD\|371210	pfam10722, YbjN, Putative bacterial sensory transduction regulator. YbjN is a putative sensory transduction regulator protein found in Proteobacteria. As it is a multi-copy suppressor of the coenzyme A-associated temperature sensitivity in temperature-sensitive mutant strains of Escherichia coli the suggestion is that it both helps CoA-A1 and possibly works as a general stabilizer for some other unstable proteins. This family was expanded to subsume other related families: DUF1790, DUF1821 and DUF2596.	1.12424e-17
NZ_CP011542.1\|WP_047263664.1\|2977421_2977646_-\|DUF3263-domain-containing-protein	gnl\|CDD\|378688	pfam11662, DUF3263, Protein of unknown function (DUF3263). This family of proteins with unknown function appears to be restricted to Actinobacteria.	7.35365e-25
NZ_CP011542.1\|WP_047262928.1\|2995740_2997030_-\|adenylosuccinate-synthase	gnl\|CDD\|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
NZ_CP011542.1\|WP_047262927.1\|2994501_2995710_-\|formate-dependent-phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|236454	PRK09288, purT, formate-dependent phosphoribosylglycinamide formyltransferase.	0
NZ_CP011542.1\|WP_047262915.1\|2978250_2979207_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.03648e-12
NZ_CP011542.1\|WP_047262925.1\|2992254_2993637_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|215457	PLN02852, PLN02852, ferredoxin-NADP+ reductase.	2.03503e-144
NZ_CP011542.1\|WP_047262916.1\|2979976_2981455_+\|cardiolipin-synthase	gnl\|CDD\|234967	PRK01642, cls, cardiolipin synthetase; Reviewed.	1.82255e-130
NZ_CP011542.1\|WP_047262918.1\|2982243_2983173_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213235	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter. The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.	1.82212e-95
NZ_CP011542.1\|WP_047262926.1\|2993998_2994505_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225064	COG2153, ElaA, Predicted acyltransferase [General function prediction only].	9.89793e-48
NZ_CP011542.1\|WP_047262924.1\|2990588_2991962_-\|phosphate-acetyltransferase	gnl\|CDD\|235537	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed.	0
NZ_CP011542.1\|WP_047262920.1\|2984651_2985635_+\|glutamate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270408	cd13690, PBP2_GluB, Substrate binding domain of ABC glutamate transporter; the type 2 periplasmic binding protein fold. This group includes periplasmic glutamate-binding domain GluB from Corynebacterium efficiens and its related proteins. The GluB domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.32229e-73
NZ_CP011542.1\|WP_047262914.1\|2977662_2978247_+\|peptide-deformylase	gnl\|CDD\|234668	PRK00150, def, peptide deformylase; Reviewed.	6.78423e-73
NZ_CP011542.1\|WP_052844782.1\|2987985_2989167_-\|HNH-endonuclease	gnl\|CDD\|238038	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.	8.11287e-07
NZ_CP011542.1\|WP_047262923.1\|2989398_2990589_-\|acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
NZ_CP011542.1\|WP_047263665.1\|2979221_2979980_+\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|197320	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Escherichia coli ExoIII, Neisseria meningitides NExo,and related proteins. These are ExoIII family AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiencies. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity. For example, Neisseria meningitides Nape and NExo, and exonuclease III (ExoIII) and endonuclease IV (EndoIV) in Escherichia coli. NExo and ExoIII are found in this subfamily. NExo is the non-dominant AP endonuclease. It exhibits strong 3'-5' exonuclease and 3'-deoxyribose phosphodiesterase activities. Escherichia coli ExoIII is an active AP endonuclease, and in addition, it exhibits double strand (ds)-specific 3'-5' exonuclease, exonucleolytic RNase H, 3'-phosphomonoesterase and 3'-phosphodiesterase activities, all catalyzed by a single active site. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes ExoIII and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily.	1.53908e-89
NZ_CP011542.1\|WP_083987588.1\|2976813_2977416_-\|LytR-C-terminal-domain-containing-protein	gnl\|CDD\|379163	pfam13399, LytR_C, LytR cell envelope-related transcriptional attenuator. This family appears at the C-terminus of members of the LytR_cpsA_psr, pfam03816, family.	6.8312e-15

>NZ_CP011542.1|WP_047262920.1|2984651_2985635_+|glutamate-ABC-transporter-substrate-binding-protein
MHLSRIIATLGCTLIISACAQPTPLPAPTPAPSLPYTPLPQGAVIEKAGTKAPRTIVDTELLGSLAPDDKTPEERVPHIIERGRLIVGVDQSQNLLSFRDTAAGELQGFEIDLAKEIARDIFGDPNHIEFRFVDSANWVASLESKTIDIAIRTISITRHRQDQVSFSTPYLAGNTRILTDKSSLIKEIGDLHGRTICVTNKSTGADIARRQAPTSDLLVVRNSADCLIALQQNQANAVITDDTILSGIAAQDPFTTIIGKSLNTDNYGIAIAKPGHRHHTDGLIRQVNATLERTYTDGTWQKTYNHWFGNYLPNQTPPATKYRTEPK
>NZ_CP011542.1|WP_052844858.1|2983314_2984652_+|hypothetical-protein
MPDDTQDRWLDKTARRRSVIRRLWHGYINYPRRWTKKFLRFLNTTPGKMTAMVLLLSIFTFSAGISMSNIAADRRLDFDRLINNTEPVSYMAHNLYTSLSSANTAASSGFVLAGTDSETARAEYFTAFQEAGHAIAQTAGGITIDDTQELELITELSQKLPIYTGIVETAWANNRQGNPVGVAYMSEASTLMREELLPLAARLYTLTSENVEKQQLSLTEPLWLPISGLAAALIALILAQIWMSATTNRRFNKGMLLAFALMAIATTWVVTANAITWQAGSKAYEKASAPLENLTDARILAQQARTQEMLALVWRQSLESSGTTFATATSSIKETLATFNHPTAREAETALSTWANSHNDILTALNVGDYETAQALALKSETAQAYEDLDTALAMLIDENRTIMRAYLDQGVTASTLVSTMVLLISIISVLSLWIGIRPRLQEYL
>NZ_CP011542.1|WP_047262918.1|2982243_2983173_-|ABC-transporter-ATP-binding-protein
MIEVRGLSKQYGDVRAVDDLSFDVRPGIVTGFLGPNGAGKSTTMRMILGLDAPTSGTALIDGVAYRSMKDPLFKVGTLLDAKAVHPNRRAIDHLTWVAQSNGIKKSRVGEVLHLVGLTGVAKKKAGGFSLGMGQRLGLATALLGDPEILILDEPVNGLDPEGIRWVREFLRGLASEGRTILVSSHLLSEMSQTADHLVVIGKGKLVADCSTYSFIKENSKSTVIVRSSDNERLRLGLEQQGIVVRTEVDEEGRPLLLIDNFQTDQVGAVAFQHQIALYQLSERQASLEDAFMEMTNHAVQYQATERESN
>NZ_CP011542.1|WP_047262917.1|2981479_2982241_-|multidrug-ABC-transporter-permease
MKTFISEWTKLTTTNAIYWTTALFIFMAVGFAALAGSQVEPDPLVFNIPILYADKVVTAIAALGTFVVSVQAIMVVTAEYRHNYQSVTFMATPNRIVVALAKWLLYSIIVAIVTFITVILCFYMAKTTATEAASATLEVWRDDNARRIMWTYPLTLVLLVTFSQGVAWLLRQTAGAVALMSLWILALEGILSLLPHIGEYVKQYGPMSNMTAFLLKEPIVDGPWGVYGSGIYFACWAIVVFLIGVGVLKSRDA
>NZ_CP011542.1|WP_047262916.1|2979976_2981455_+|cardiolipin-synthase
MITLGNFDLSSWQTIGLIIDYSIKIIAIGFVPEGRRPSSSTAWLLAILALPYIGLPLFLLMGSPYINRRRHRIQQAATRRITNVQAKVPNHPLEEISRELDSVIALNRTLTAMPAVTGTNHGVHSDYNDIIKRMAEAVDNARDYVHVEIYIMAWDDTTDVFFQALARATRRGVKVRLLLDHVGSWKYPGFYKLGRRLSAIGVEWHLMLPLQPWRWRFRRPDLRNHRKMLIIDGERGFLGSLNMIDSSYLLPANIKDGRHWIDIMVELSGPVVASMNTVFAVDWYLESDELLEVVDQAPPNLEREDVNLVQLVPSGPGYTTEPNLRMFNSIIHHAKDRLVMCSPYFIPDESMLEAVTSACYRGVRVELLVSEQADQFMVGHAQSSYYQALLEAGVRIFQYRAPYVLHSKYVLADPESPDAVGVVGSSNMDMRSFGLNYEVSLMMTRGDIITQLNELTTEYQANSTELTLSEWNKRGLARRYIDNIMRLTSALQ
>NZ_CP011542.1|WP_047263665.1|2979221_2979980_+|endonuclease/exonuclease/phosphatase-family-protein
MRIANWNVNSARTRVTRMTDFLHRHDIDVCLVQETKCTDAQFPYDAFPDYEIAHLGFNQWNGVAILSRIGLTDVETAFPGQPGFHKDPTKPQEIEARAISALCNGVRVWSLYVPNGREIADPHYDYKLRWLHALANHVSHTTGPLVLGGDFNIAPLDAHVWSPAAFVGLTHVTEPERQAFDRLLEAGLTVTSPFTGFSYWDYKGARFDRGEGMLIDFQLARDITATNSLIDVKERAGKGASDHAPVIVDYAL
>NZ_CP011542.1|WP_047262915.1|2978250_2979207_+|GNAT-family-N-acetyltransferase
MSRIFRSDAIAPGDRVVLRRVIDGNHSDIIGHVVEVTDEYTRIRPQLAGGFPSQKPEIRVAADEIAIVKKLSPRRVRNSDIRTIETAYAKAFPGIDHMWVDGWLLRAGDGITERSNSAAPLGPSAPFNPVPIKEIKEFYARHNLPPQVLIPERIGRGVEKHVAELGPEIIVMTTPLDTVPDVPVSCEFRVDDQPDDDWLSLYHFRGKPLPNHALEQLRRTIDGTMGFGRLTIDGVTVAITRGTITDNHLGYSAVEVAPEYRRKGLGTQLGARMMAWGRDNGAHTSYLQVIASNTAGIALYRKLGFVEHHRHCYGLLKA
>NZ_CP011542.1|WP_047262914.1|2977662_2978247_+|peptide-deformylase
MTVRPIVIYGTPVLHNPTKPVTEPIADLAELIADMYETMAAAHGVGLAANQIGVDKRIFVYDCPDDEGNFHKGCFINPVLETSEIPLGMPATDGSDEEGCLSLPGLGFPTGRADWAKVTGFNEHGEEVTVEATGFLARCFQHEVGHLDGFVYADVLQGRWKRAAKKAIKREGWTEAGLTWLPGVDPDPFGHDDE
>NZ_CP011542.1|WP_047263664.1|2977421_2977646_-|DUF3263-domain-containing-protein
MLEPSDILSFEESAPKTIGAKEEAIRMQLGISPVRYYQRLNIVIDMPEMMEKYPQLTARLRRIRDQRATERNQT
>NZ_CP011542.1|WP_083987588.1|2976813_2977416_-|LytR-C-terminal-domain-containing-protein
MTIVTDNNKPAQQPLPLRGVAMILIAVAVLLAGWGIYTAVSGLGGDSEQQAAPAAATSKSTAPAAQKQQPKTQPEQPMPQETPQDTPSAAPQDTPQQQPQQPQQPAGNQPITVHVLNNSTVQGLAARAGDRLDNAGYTIGHVGNYSDTVVPQNTVYFSDNEAQARELAAEIGGVAVPRPANLPAETQGPSSLVVVLATDF
>NZ_CP011542.1|WP_052844782.1|2987985_2989167_-|HNH-endonuclease
MDMPEIFIAYAQLAQRGAELLLAIKETGMDKIELSTALGISQATASRMIATAKVYESEELAQADGICFEILRDIAITSRKLTNPDVDRQALRAQLFDDARSRTVDENKQHVTAVVEKLNGGYTRNRKWHLRYSATPDADGMSYIIAKLPTEQAEHLRSSLTPEARALVHSHNAVDEAEGHAKALYRRIATPIKEIEYAEAWENPENPRDLRQRPCIIIPDWELTKNIDGTVVDTNGVVVNINDIANRRLEKYGFAVTIYKDHTGVMRPQNVLEIKRLADANDRFLSILSHLVCQHPDCTINAIRCETHHIQSFATGGKTSPENLCPLCRKHNLKNDDGPTIKNGRVITDPATGLTYYQMPDGTIRRNRHRANKRGLAAYAARMSAIDKPPPEA
>NZ_CP011542.1|WP_047262923.1|2989398_2990589_-|acetate-kinase
MSLVLVLNSGSSSIKFQLVDPDQHATDEPFASGLVEQIGETEGTITLKHAGEKHTIKAPIPDHATGLDLSFKLMGEHGCGPLDVDLVAVGHRLVHGGILFSKPEIITDEILEMVRDLIPLAPLHNPANIQGVEVARELLPDIPHIGVFDTGFFHAMPPAAALYAINAEVAAENGVRRYGFHGTSHEYVSHKVHELMESDHINQITLHLGNGASCAAIKAGQPIDTSMGMTPLAGLVMGTRSGDIDPGIVFHLHRTAGMSIDEIDSLLNKQSGVKGISGVNDFRELRAKIDDGDQDAWLAYNVYIHQLRRYIGSYMITLGNVDAITFTAGVGENATFVRADALAGLEMYGIKIDEERNNQPNTGPRLISTDDSRIKVWVVPTNEELAIARYAKKLAS
>NZ_CP011542.1|WP_047262924.1|2990588_2991962_-|phosphate-acetyltransferase
MTQTTRSVLLTAIGRRLNPAEVAEFANALGVNIRPLVHETPEIADVLKHASDDPVVYTGTGNLNFDARSAAALGVAMVIQAAEEATITELARIEAAELGAKIAAIVVGEQSLTTATEAARTTEAQQVMNADVFEHWLLNRAKQNQAHIVLPEGDDDRILTAADQLLRERICQLTILGDPATVLARGVELGLDLSNANIADPLNDARAEEFAQEFYELRKHKGMTLEEAKETMKDISYYATMMIHKGLADGMVSGAAHTTAHTIKPSFQIIKTVPGASVVSSIFIMVMRGKLWAFGDCAVNPNPTAEQLAEIAVISARTAAQFGIDPKVAILSYSTGTSGTGPDVDRATEAVRIAQEKDPALLVDGPLQFDAAMDPGVAAKKLPDSKVAGQANVFIFPDLEAGNIGYKTAQRTGHALAVGPILQGLNKPVNDLSRGATVPDIVNTVAITAIQATGGKA
>NZ_CP011542.1|WP_047262925.1|2992254_2993637_+|FAD-dependent-oxidoreductase
MSSTSLDSSRPLRVAVVGAGPAGIYASDLLMKSGTDVEIDLFERMPAPFGLIRYGVAPDHPRIKAIVNSLHAIMEKPQLRFLGNVAVGTDVTVEQLRQFYDAIVFSTGAVADRDLDIPGQDLAGSHGAAEFVGFYDGNPDFKRDWDLSAEKVAVIGVGNVALDVARILAKTGDELLVTEIPDNVYASLKNNKATEVHVFGRRGPAQAKFTPLELKELDHSPTIEVIVDPEDIDYDAASEQARRDSKSQDLVCQTLEQYAMRDPQGAPHKLFIHFFESPVEILGENGKVVGLKTERMQLDGSGGVTGTGTFTTWPVQSVYRAVGYRSDAVTGVPFDAESAVIPNDGGHVLDPDSRQPVPGLYATGWIKRGPVGLIGNTKSDAKETTEMLLADYAAGKLQAPAQPSKDAVLEFLNAQGITFTTWDGWHRLDNAERALGAPEGRERKKIVEWDEMVSHARHDA
>NZ_CP011542.1|WP_047262926.1|2993998_2994505_+|GNAT-family-N-acetyltransferase
MNVFFAVDQLSRLSALEVHKIYKLRVDVFVHEQKSPYQEIDEVDALDTTFHVQAWKHADLVERDLIACARLYPEVAPSGANRFHLGRVCVAQPYRDQGLGTEIMKQTLRLAAEQNPEWDVYIESQTTSVPFYEALGFTSSGEEFDWDGVPHMPMVLPAAKVATYTTLD
>NZ_CP011542.1|WP_047262927.1|2994501_2995710_-|formate-dependent-phosphoribosylglycinamide-formyltransferase
MYKPKTVGTPLSPNAIRVMLLGSGELGKEIAIAFQRLGVEVHAVDRYENAPAHQVSHFGYTVDMTDGAAIKELVDFVDPHFIVPELEALNTNTLAHLEEEGRTVVPTAKATQLTMNREGIRRLASEKLGIPTSAYWFASTEAEFHEAVAHAGFPCVAKPSMSSSGKGQSVLQGPEDIPKAWNTAQHDGRNPSKTVMVERFVNFDFEITLLTIRSIDPQSGELATWFCEPIGHRQLSGDYVESWQPMPLSPTALDAARSIAARITNALGGRGVFGVELFIAGDEVYFSEVSPRPHDTGMVTLATQRFDQFALHARAILGLPIDVTCTSPGASAVIYGGVDATAVGYTGLADALAIPETDIRLFGKPESFAYRRMGVALSTADDVTTAKARAKAAAGSIQVVAN
>NZ_CP011542.1|WP_047262928.1|2995740_2997030_-|adenylosuccinate-synthase
MAAIVIVGAQWGDEGKGKATDILGGVVDYVVKPNGGNNAGHTVVVGGEKYELKLLPAGVLSENATPILGNGVVINLEALFDEIDGLESRGADASRLRISANAHLVAPYHQILDRVQERFLGKRAIGTTGRGIGPTYADKVSRVGIRVQDVFDESILRQKIESALDIKNQILVKMYNRQAIVADEIVDYFLSYADRLKPMMIDAELELNKALDAGKHVLMEGGQATMLDVDHGTYPFVTSSNPTAGGACVGSGIGPTRITSSLGIIKAYTTRVGAGPFPTELFDKWGEFLQVTGGEVGVNTGRKRRCGWYDSVIARYASRVNGFTDLFLTKLDVLTGIGEIPICVAYDVDGVRYDEMPLTQSEFHHAVPIYETMPAWEEDITGCTSFEELPDKAQAYVRRLEELSGCRISYIGVGPGRDQTIVIHDVMAN
>NZ_CP011542.1|WP_052844783.1|2997267_2997945_+|hypothetical-protein
MSYSGPSPSGMDDKNNLHNAFQGAQLPPPVAPTPQPITKSSRSLTAILVVIAIALVVVGVLLGIQVLKSSTSESVPVAAPETVTKKVEVVTEVVTTTTVATQQQQPQEPASNTQAASQVGLKATGFSALSCVGNDTWVFAAVSTDGKHVLICQFGTTGGYYYTHDYLADVYRKDVDEANLAAGTFRVVNSDATISIAPSGLFVDAVQGSDFSSSFSTSFTSNPWR
>NZ_CP011542.1|WP_052844784.1|2997941_3000137_-|hypothetical-protein
MFTTASMLRRGYFVASATQPSATQAQTVTAAYQLLRLGFVSKWEELATLTDTELVVLLENARTVAGVNRTFKVMYPGFPQEVMDADDITLVCNAIMHYYEFGEWLPTTSRRYQREALKAIDWTQNFRELMLRHLDDSTLTQLWAKPVSMSAADVMHSIDLINALRGTQISELPMKNPLFGRFRQLVRANTINRTGFDPIALMETTTIRNSENFGAALHGLRRAGFDRDRIMASALGKARNLDDVLRAALVLYTKVPNSGFSFADLKYPGIAVATMPRKIRRQVLKALALFDDPTNLNLLVRRKPLWQKVMRSIRPYSISGHDQVRFQLDIIHDNITYRSFNSQVETALAKGDTQRALELMETSPGMLIRRAQHLMRLSHTDPAAMARLCAAIAEIGAQSRLSTLISAYNALRNRNAELVVIRILGVGPKLLRRIPDGVETETVTQVKTALESAIRNRLAATTPPREPVACGCPDPVELVRRDVSDTIRPLARGEHIPLDFAADDCSLRLFMHWFGFDVDLGVIFADDTLTQQLAYVDYTNLADNRLRHVVTHSGDIVYAPKPDGAAEFINIRLRSEAGRAGAATVFDTIPGVRYAIPVLISYSGLPFRLIDNYTGVMTRRGLMSGEVFEPRTVETAMRLVNDGTSAIPFVIDLKNEELIWLDTSLGVKRGRLHTGGTGAVDMVRAELESLSARMTVGELLSLWAAAHGADTTGETDTRCATEQVERLLAEC
>NZ_CP011542.1|WP_047262929.1|3000361_3000796_+|YbjN-domain-containing-protein
MSELTEPFTIDRVADYLRAQDYNFTTDQDGDIFTGFDENNFVLVATGKMREIYVVRATWKVTAPIDARGKLVEICNDWNREKLWPKAYVTVDDEGMVRVHAETNTDLEHGVGDRQLAQFTDCGIATALQLFNRLDEEFPDTRFS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP011542_3	3.85\|2753763\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2753763-2753795	33	NZ_CP011542.1	921309-921341	1	0.97
NZ_CP011542_3	3.85\|2753763\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2753763-2753795	33	NZ_CP011544.1	22493-22525	1	0.97
NZ_CP011542_3	3.90\|2754068\|33\|NZ_CP011542\|CRISPRCasFinder,CRT	2754068-2754100	33	NZ_CP011542.1	258397-258429	0	1.0

1. spacer 3.85|2753763|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to position: 921309-921341, mismatch: 1, identity: 0.97

gcttcagcccggcgatgacatcgccatgttctt	CRISPR spacer
gcttcagcccggcgacgacatcgccatgttctt	Protospacer
***************.*****************

2. spacer 3.85|2753763|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to position: 22493-22525, mismatch: 1, identity: 0.97

gcttcagcccggcgatgacatcgccatgttctt	CRISPR spacer
gcttcagcccggcgacgacatcgccatgttctt	Protospacer
***************.*****************

3. spacer 3.90|2754068|33|NZ_CP011542|CRISPRCasFinder,CRT matches to position: 258397-258429, mismatch: 0, identity: 1.0

ctccagctcgtaataccgttgccctgcgggggt	CRISPR spacer
ctccagctcgtaataccgttgccctgcgggggt	Protospacer
*********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP011542_3	3.85\|2753763\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2753763-2753795	33	NZ_CP011544	Corynebacterium mustelae strain DSM 45274 plasmid phiCmus45274, complete sequence	22493-22525	1	0.97
NZ_CP011542_6	6.1\|2985690\|29\|NZ_CP011542\|CRISPRCasFinder	2985690-2985718	29	NZ_CP020040	Streptomyces sp. 3211 isolate 3 plasmid p3211-1, complete sequence	60630-60658	4	0.862
NZ_CP011542_6	6.1\|2985690\|29\|NZ_CP011542\|CRISPRCasFinder	2985690-2985718	29	NZ_LR134451	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 9, complete sequence	311325-311353	6	0.793
NZ_CP011542_6	6.1\|2985690\|29\|NZ_CP011542\|CRISPRCasFinder	2985690-2985718	29	NZ_CP047227	Moraxella osloensis strain YV1 plasmid p1, complete sequence	23916-23944	6	0.793
NZ_CP011542_6	6.1\|2985690\|29\|NZ_CP011542\|CRISPRCasFinder	2985690-2985718	29	NZ_CP047227	Moraxella osloensis strain YV1 plasmid p1, complete sequence	89253-89281	6	0.793
NZ_CP011542_1	1.4\|41215\|32\|NZ_CP011542\|CRT,PILER-CR,CRISPRCasFinder	41215-41246	32	MT799840	Salmonella phage JN03, complete genome	206716-206747	7	0.781
NZ_CP011542_1	1.8\|41459\|32\|NZ_CP011542\|CRT,PILER-CR,CRISPRCasFinder	41459-41490	32	MK448580	Streptococcus satellite phage Javan62, complete genome	3023-3054	7	0.781
NZ_CP011542_3	3.7\|2749014\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2749014-2749046	33	CP052400	Klebsiella pneumoniae strain C17KP0039 plasmid pC17KP0039-1, complete sequence	148393-148425	7	0.788
NZ_CP011542_3	3.57\|2752054\|33\|NZ_CP011542\|CRISPRCasFinder,CRT	2752054-2752086	33	AP013956	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C5F-MedDCM-OCT-S27-C232, * SEQUENCING IN PROGRESS *	3687-3719	7	0.788
NZ_CP011542_3	3.57\|2752054\|33\|NZ_CP011542\|CRISPRCasFinder,CRT	2752054-2752086	33	AP013963	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C5F-MedDCM-OCT-S38-C146, * SEQUENCING IN PROGRESS *	3687-3719	7	0.788
NZ_CP011542_3	3.57\|2752054\|33\|NZ_CP011542\|CRISPRCasFinder,CRT	2752054-2752086	33	AP013959	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C5F-MedDCM-OCT-S31-C107, * SEQUENCING IN PROGRESS *	8764-8796	7	0.788
NZ_CP011542_3	3.57\|2752054\|33\|NZ_CP011542\|CRISPRCasFinder,CRT	2752054-2752086	33	AP013565	Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C5F-MedDCM-OCT-S40-C10, * SEQUENCING IN PROGRESS *, 2 ordered pieces	37823-37855	7	0.788
NZ_CP011542_3	3.57\|2752054\|33\|NZ_CP011542\|CRISPRCasFinder,CRT	2752054-2752086	33	AP013961	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C5F-MedDCM-OCT-S34-C156, * SEQUENCING IN PROGRESS *	3659-3691	7	0.788
NZ_CP011542_6	6.1\|2985690\|29\|NZ_CP011542\|CRISPRCasFinder	2985690-2985718	29	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	52407-52435	7	0.759
NZ_CP011542_6	6.1\|2985690\|29\|NZ_CP011542\|CRISPRCasFinder	2985690-2985718	29	NC_047758	Pectobacterium phage PPWS1 DNA, complete genome	34243-34271	7	0.759
NZ_CP011542_6	6.1\|2985690\|29\|NZ_CP011542\|CRISPRCasFinder	2985690-2985718	29	LC375533	Pectobacterium phage PPWS2 DNA, complete genome	34916-34944	7	0.759
NZ_CP011542_1	1.3\|41154\|32\|NZ_CP011542\|CRT,PILER-CR,CRISPRCasFinder	41154-41185	32	NZ_LR134454	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 12, complete sequence	217714-217745	8	0.75
NZ_CP011542_1	1.6\|41337\|32\|NZ_CP011542\|CRT,PILER-CR,CRISPRCasFinder	41337-41368	32	MN871446	UNVERIFIED: Serratia phage KpLz-2_45, complete genome	208547-208578	8	0.75
NZ_CP011542_1	1.6\|41337\|32\|NZ_CP011542\|CRT,PILER-CR,CRISPRCasFinder	41337-41368	32	MN871452	UNVERIFIED: Serratia phage KpZh_1, complete genome	30280-30311	8	0.75
NZ_CP011542_1	1.6\|41337\|32\|NZ_CP011542\|CRT,PILER-CR,CRISPRCasFinder	41337-41368	32	MN871453	UNVERIFIED: Serratia phage KpZh_LPS_45, complete genome	196848-196879	8	0.75
NZ_CP011542_1	1.6\|41337\|32\|NZ_CP011542\|CRT,PILER-CR,CRISPRCasFinder	41337-41368	32	MN871448	UNVERIFIED: Serratia phage KpSz_1, complete genome	31796-31827	8	0.75
NZ_CP011542_1	1.13\|41764\|32\|NZ_CP011542\|CRT,CRISPRCasFinder	41764-41795	32	AP014887	Vibrio phage CKB-S1 DNA, complete sequence	41126-41157	8	0.75
NZ_CP011542_3	3.8\|2749075\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2749075-2749107	33	NZ_CP039845	Acetobacter pasteurianus strain CICC 22518 plasmid pAP22518-1, complete sequence	126494-126526	8	0.758
NZ_CP011542_3	3.10\|2749197\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2749197-2749229	33	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	610906-610938	8	0.758
NZ_CP011542_3	3.13\|2749380\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2749380-2749412	33	MN694149	Marine virus AFVG_250M25, complete genome	11946-11978	8	0.758
NZ_CP011542_3	3.13\|2749380\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2749380-2749412	33	MN693693	Marine virus AFVG_250M24, complete genome	11933-11965	8	0.758
NZ_CP011542_3	3.13\|2749380\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2749380-2749412	33	MN694592	Marine virus AFVG_250M26, complete genome	11956-11988	8	0.758
NZ_CP011542_3	3.40\|2751016\|34\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2751016-2751049	34	MG893203	Vibrio phage VP06, complete genome	52061-52094	8	0.765
NZ_CP011542_3	3.41\|2751078\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2751078-2751110	33	JN880423	Salisaeta icosahedral phage 1, complete genome	2176-2208	8	0.758
NZ_CP011542_3	3.85\|2753763\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2753763-2753795	33	NZ_CP016620	Microvirga ossetica strain V5/3m plasmid unnamed4, complete sequence	134593-134625	8	0.758
NZ_CP011542_1	1.3\|41154\|32\|NZ_CP011542\|CRT,PILER-CR,CRISPRCasFinder	41154-41185	32	NZ_CP017944	Phyllobacterium zundukense strain Tri-48 plasmid unnamed4, complete sequence	117158-117189	9	0.719
NZ_CP011542_1	1.7\|41398\|32\|NZ_CP011542\|CRT,PILER-CR,CRISPRCasFinder	41398-41429	32	NZ_CP050084	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b2, complete sequence	214755-214786	9	0.719
NZ_CP011542_1	1.7\|41398\|32\|NZ_CP011542\|CRT,PILER-CR,CRISPRCasFinder	41398-41429	32	NZ_CP050104	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence	761552-761583	9	0.719
NZ_CP011542_1	1.7\|41398\|32\|NZ_CP011542\|CRT,PILER-CR,CRISPRCasFinder	41398-41429	32	NZ_CP025507	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence	540398-540429	9	0.719
NZ_CP011542_1	1.7\|41398\|32\|NZ_CP011542\|CRT,PILER-CR,CRISPRCasFinder	41398-41429	32	NZ_CP050109	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence	761552-761583	9	0.719
NZ_CP011542_1	1.7\|41398\|32\|NZ_CP011542\|CRT,PILER-CR,CRISPRCasFinder	41398-41429	32	NZ_CP053209	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1A, complete sequence	11676-11707	9	0.719
NZ_CP011542_1	1.12\|41703\|32\|NZ_CP011542\|CRT,PILER-CR,CRISPRCasFinder	41703-41734	32	NZ_CP024415	Lactobacillus plantarum strain ATCC 8014 plasmid pLP39, complete sequence	6893-6924	9	0.719
NZ_CP011542_1	1.12\|41703\|32\|NZ_CP011542\|CRT,PILER-CR,CRISPRCasFinder	41703-41734	32	NZ_CP018210	Lactobacillus plantarum strain BLS41 plasmid pLPBLS41_1, complete sequence	25384-25415	9	0.719
NZ_CP011542_1	1.12\|41703\|32\|NZ_CP011542\|CRT,PILER-CR,CRISPRCasFinder	41703-41734	32	MG788324	Lactobacillus phage PM411, complete genome	42932-42963	9	0.719
NZ_CP011542_1	1.12\|41703\|32\|NZ_CP011542\|CRT,PILER-CR,CRISPRCasFinder	41703-41734	32	NZ_CP053207	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1C, complete sequence	44799-44830	9	0.719
NZ_CP011542_3	3.6\|2748953\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2748953-2748985	33	NZ_CP050138	Sphingomonas sp. CL5.1 plasmid pTSSC1, complete sequence	43116-43148	9	0.727
NZ_CP011542_3	3.19\|2749747\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2749747-2749779	33	NZ_CP048642	Streptomyces aureoverticillatus strain HN6 plasmid unnamed, complete sequence	18602-18634	9	0.727
NZ_CP011542_3	3.19\|2749747\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2749747-2749779	33	NC_017327	Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence	492679-492711	9	0.727
NZ_CP011542_3	3.19\|2749747\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2749747-2749779	33	NZ_CP009145	Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence	517317-517349	9	0.727
NZ_CP011542_3	3.19\|2749747\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2749747-2749779	33	NZ_CP021801	Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence	439384-439416	9	0.727
NZ_CP011542_3	3.19\|2749747\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2749747-2749779	33	NC_018683	Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence	1291244-1291276	9	0.727
NZ_CP011542_3	3.19\|2749747\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2749747-2749779	33	NZ_CP021809	Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence	895931-895963	9	0.727
NZ_CP011542_3	3.19\|2749747\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2749747-2749779	33	NZ_CP021217	Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence	77596-77628	9	0.727
NZ_CP011542_3	3.19\|2749747\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2749747-2749779	33	NZ_CP026526	Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence	1375914-1375946	9	0.727
NZ_CP011542_3	3.37\|2750845\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2750845-2750877	33	MG592415	Vibrio phage 1.031.O._10N.261.46.F8, partial genome	90940-90972	9	0.727
NZ_CP011542_3	3.80\|2753458\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2753458-2753490	33	NC_011879	Pseudarthrobacter chlorophenolicus A6 plasmid pACHL01, complete sequence	216055-216087	9	0.727
NZ_CP011542_3	3.85\|2753763\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2753763-2753795	33	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	709947-709979	9	0.727
NZ_CP011542_3	3.85\|2753763\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2753763-2753795	33	NZ_CP029834	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence	241662-241694	9	0.727
NZ_CP011542_3	3.88\|2753946\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2753946-2753978	33	NZ_CP012641	Massilia sp. WG5 plasmid unnamed 1, complete sequence	36588-36620	9	0.727
NZ_CP011542_3	3.89\|2754007\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2754007-2754039	33	NZ_CP043832	Bacillus sp. BS98 plasmid unnamed2	207915-207947	9	0.727
NZ_CP011542_3	3.89\|2754007\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2754007-2754039	33	NZ_CP020434	Bacillus sp. FDAARGOS_235 plasmid 1, complete sequence	54741-54773	9	0.727
NZ_CP011542_1	1.10\|41581\|32\|NZ_CP011542\|CRT,PILER-CR,CRISPRCasFinder	41581-41612	32	NZ_LN907828	Erwinia gerundensis isolate E_g_EM595 plasmid pEM01, complete sequence	565176-565207	10	0.688
NZ_CP011542_3	3.50\|2751627\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2751627-2751659	33	NZ_CP030786	Escherichia albertii strain 2012EL-1823B plasmid unnamed3, complete sequence	20475-20507	10	0.697
NZ_CP011542_3	3.70\|2752848\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2752848-2752880	33	MN871440	UNVERIFIED: Aeromonas phage AsFcp_1, complete genome	165512-165544	10	0.697
NZ_CP011542_3	3.70\|2752848\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2752848-2752880	33	MH791407	UNVERIFIED: Aeromonas phage AsFcp_4, partial genome	217715-217747	10	0.697
NZ_CP011542_3	3.70\|2752848\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2752848-2752880	33	MH791401	UNVERIFIED: Aeromonas phage AsFcp_2, complete genome	41975-42007	10	0.697
NZ_CP011542_3	3.80\|2753458\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2753458-2753490	33	NZ_CP013487	Vibrio alginolyticus strain ATCC 33787 plasmid pMBL287, complete sequence	1524-1556	10	0.697
NZ_CP011542_3	3.80\|2753458\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2753458-2753490	33	NZ_CP013488	Vibrio alginolyticus strain ATCC 33787 plasmid pMBL96, complete sequence	58801-58833	10	0.697
NZ_CP011542_3	3.87\|2753885\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2753885-2753917	33	NZ_KY349138	Mycolicibacterium sp. CBMA 213 plasmid pCBMA213_2, complete sequence	138635-138667	10	0.697
NZ_CP011542_1	1.12\|41703\|32\|NZ_CP011542\|CRT,PILER-CR,CRISPRCasFinder	41703-41734	32	NZ_CP022999	Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence	630219-630250	11	0.656
NZ_CP011542_3	3.36\|2750784\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2750784-2750816	33	NZ_CP049249	Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence	617059-617091	11	0.667

1. spacer 3.85|2753763|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011544 (Corynebacterium mustelae strain DSM 45274 plasmid phiCmus45274, complete sequence) position: , mismatch: 1, identity: 0.97

gcttcagcccggcgatgacatcgccatgttctt	CRISPR spacer
gcttcagcccggcgacgacatcgccatgttctt	Protospacer
***************.*****************

2. spacer 6.1|2985690|29|NZ_CP011542|CRISPRCasFinder matches to NZ_CP020040 (Streptomyces sp. 3211 isolate 3 plasmid p3211-1, complete sequence) position: , mismatch: 4, identity: 0.862

caccccaaccagcccaaccacagcggcca--	CRISPR spacer
caccccaaccaccccaaccac--ccgccacc	Protospacer
*********** *********  * ****

3. spacer 6.1|2985690|29|NZ_CP011542|CRISPRCasFinder matches to NZ_LR134451 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 9, complete sequence) position: , mismatch: 6, identity: 0.793

caccccaaccagcccaaccacagcggcca	CRISPR spacer
aacccgaaccagccgaaccacagcagtcc	Protospacer
 **** ******** *********.*.*

4. spacer 6.1|2985690|29|NZ_CP011542|CRISPRCasFinder matches to NZ_CP047227 (Moraxella osloensis strain YV1 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.793

caccccaaccagcccaaccacagcggcca	CRISPR spacer
cagcccaaccaacccaaccacaggactca	Protospacer
** ********.*********** . .**

5. spacer 6.1|2985690|29|NZ_CP011542|CRISPRCasFinder matches to NZ_CP047227 (Moraxella osloensis strain YV1 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.793

caccccaaccagcccaaccacagcggcca	CRISPR spacer
cagcccaaccaacccaaccacaggactca	Protospacer
** ********.*********** . .**

6. spacer 1.4|41215|32|NZ_CP011542|CRT,PILER-CR,CRISPRCasFinder matches to MT799840 (Salmonella phage JN03, complete genome) position: , mismatch: 7, identity: 0.781

gatgcggcgaatatcattggcgtttctccatc	CRISPR spacer
gatgcggcgaatatgatgggcgtgccacctgc	Protospacer
************** ** ***** .* **  *

7. spacer 1.8|41459|32|NZ_CP011542|CRT,PILER-CR,CRISPRCasFinder matches to MK448580 (Streptococcus satellite phage Javan62, complete genome) position: , mismatch: 7, identity: 0.781

gacggggaataaaatcctcaatacccacaaag	CRISPR spacer
gacgacgaataaaatcctcaatattcgccaat	Protospacer
****. *****************..*.* **

8. spacer 3.7|2749014|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to CP052400 (Klebsiella pneumoniae strain C17KP0039 plasmid pC17KP0039-1, complete sequence) position: , mismatch: 7, identity: 0.788

cccctgcttaatgccatcgaacgcaggtttgag-	CRISPR spacer
gccctgcttaatgccatagaccgca-atctgatc	Protospacer
 **************** ** **** .*.***

9. spacer 3.57|2752054|33|NZ_CP011542|CRISPRCasFinder,CRT matches to AP013956 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C5F-MedDCM-OCT-S27-C232, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.788

ttaccaccgacaacaccacaaaaacagcaaaca	CRISPR spacer
ttaccaccggcaacaccacaacaaccgacagcg	Protospacer
*********.*********** *** *  *.*.

10. spacer 3.57|2752054|33|NZ_CP011542|CRISPRCasFinder,CRT matches to AP013963 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C5F-MedDCM-OCT-S38-C146, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.788

ttaccaccgacaacaccacaaaaacagcaaaca	CRISPR spacer
ttaccaccggcaacaccacaacaaccgacagcg	Protospacer
*********.*********** *** *  *.*.

11. spacer 3.57|2752054|33|NZ_CP011542|CRISPRCasFinder,CRT matches to AP013959 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C5F-MedDCM-OCT-S31-C107, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.788

ttaccaccgacaacaccacaaaaacagcaaaca	CRISPR spacer
ttaccaccggcaacaccacaacaaccgacagcg	Protospacer
*********.*********** *** *  *.*.

12. spacer 3.57|2752054|33|NZ_CP011542|CRISPRCasFinder,CRT matches to AP013565 (Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C5F-MedDCM-OCT-S40-C10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 7, identity: 0.788

ttaccaccgacaacaccacaaaaacagcaaaca	CRISPR spacer
ttaccaccggcaacaccacaacaaccgacagcg	Protospacer
*********.*********** *** *  *.*.

13. spacer 3.57|2752054|33|NZ_CP011542|CRISPRCasFinder,CRT matches to AP013961 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C5F-MedDCM-OCT-S34-C156, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.788

ttaccaccgacaacaccacaaaaacagcaaaca	CRISPR spacer
ttaccaccggcaacaccacaacaaccgacagcg	Protospacer
*********.*********** *** *  *.*.

14. spacer 6.1|2985690|29|NZ_CP011542|CRISPRCasFinder matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 7, identity: 0.759

caccccaaccagcccaaccacagcggcca	CRISPR spacer
gaccccaaccatcccaaccgcagctcgct	Protospacer
 ********** *******.****   *

15. spacer 6.1|2985690|29|NZ_CP011542|CRISPRCasFinder matches to NC_047758 (Pectobacterium phage PPWS1 DNA, complete genome) position: , mismatch: 7, identity: 0.759

caccccaaccagcccaaccacagcggcca	CRISPR spacer
taccccaactaacccaaccacagctacgg	Protospacer
.********.*.************ .* .

16. spacer 6.1|2985690|29|NZ_CP011542|CRISPRCasFinder matches to LC375533 (Pectobacterium phage PPWS2 DNA, complete genome) position: , mismatch: 7, identity: 0.759

caccccaaccagcccaaccacagcggcca	CRISPR spacer
taccccaactaacccaaccacagctacgg	Protospacer
.********.*.************ .* .

17. spacer 1.3|41154|32|NZ_CP011542|CRT,PILER-CR,CRISPRCasFinder matches to NZ_LR134454 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 12, complete sequence) position: , mismatch: 8, identity: 0.75

cacatcggcggcatggagtccattattttcga---	CRISPR spacer
gcgatcggcggcatcgagtccatga---tcgagtt	Protospacer
   *********** ******** *   ****

18. spacer 1.6|41337|32|NZ_CP011542|CRT,PILER-CR,CRISPRCasFinder matches to MN871446 (UNVERIFIED: Serratia phage KpLz-2_45, complete genome) position: , mismatch: 8, identity: 0.75

caattgacgggtatcgtcaaccgacttcgccg--	CRISPR spacer
caatttacgggtatcttcaaccg--tacgtttat	Protospacer
***** ********* *******  * **..

19. spacer 1.6|41337|32|NZ_CP011542|CRT,PILER-CR,CRISPRCasFinder matches to MN871452 (UNVERIFIED: Serratia phage KpZh_1, complete genome) position: , mismatch: 8, identity: 0.75

caattgacgggtatcgtcaaccgacttcgccg--	CRISPR spacer
caatttacgggtatcttcaaccg--tacgtttat	Protospacer
***** ********* *******  * **..

20. spacer 1.6|41337|32|NZ_CP011542|CRT,PILER-CR,CRISPRCasFinder matches to MN871453 (UNVERIFIED: Serratia phage KpZh_LPS_45, complete genome) position: , mismatch: 8, identity: 0.75

caattgacgggtatcgtcaaccgacttcgccg--	CRISPR spacer
caatttacgggtatcttcaaccg--tacgtttat	Protospacer
***** ********* *******  * **..

21. spacer 1.6|41337|32|NZ_CP011542|CRT,PILER-CR,CRISPRCasFinder matches to MN871448 (UNVERIFIED: Serratia phage KpSz_1, complete genome) position: , mismatch: 8, identity: 0.75

caattgacgggtatcgtcaaccgacttcgccg--	CRISPR spacer
caatttacgggtatcttcaaccg--tacgtttat	Protospacer
***** ********* *******  * **..

22. spacer 1.13|41764|32|NZ_CP011542|CRT,CRISPRCasFinder matches to AP014887 (Vibrio phage CKB-S1 DNA, complete sequence) position: , mismatch: 8, identity: 0.75

gtatccggcgcacatcttgaaccccg---gtgggc	CRISPR spacer
cgctccggcccacatgttgaaccccgcacgtg---	Protospacer
   ****** ***** **********   ***

23. spacer 3.8|2749075|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039845 (Acetobacter pasteurianus strain CICC 22518 plasmid pAP22518-1, complete sequence) position: , mismatch: 8, identity: 0.758

tgccccaac----accttagaagccacctcaataccc	CRISPR spacer
----ctaataagaaccctagaagccacctcaagaccc	Protospacer
    *.**.    ***.*************** ****

24. spacer 3.10|2749197|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 8, identity: 0.758

--gtgatcctcattggttgtgagaccaaaccgttt	CRISPR spacer
taataagc--tattggttgtgagaacaacccgttt	Protospacer
  .*.* *  .************* *** ******

25. spacer 3.13|2749380|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to MN694149 (Marine virus AFVG_250M25, complete genome) position: , mismatch: 8, identity: 0.758

gttgaaaatgtggtgtataaccctgatactcag	CRISPR spacer
cttgaagatgtgctgtataaccctgagtttgaa	Protospacer
 *****.***** *************  .* *.

26. spacer 3.13|2749380|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to MN693693 (Marine virus AFVG_250M24, complete genome) position: , mismatch: 8, identity: 0.758

gttgaaaatgtggtgtataaccctgatactcag	CRISPR spacer
cttgaagatgtgttgtataaccctgagtttgaa	Protospacer
 *****.***** *************  .* *.

27. spacer 3.13|2749380|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to MN694592 (Marine virus AFVG_250M26, complete genome) position: , mismatch: 8, identity: 0.758

gttgaaaatgtggtgtataaccctgatactcag	CRISPR spacer
cttgaagatgtgttgtataaccctgagtttgaa	Protospacer
 *****.***** *************  .* *.

28. spacer 3.40|2751016|34|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to MG893203 (Vibrio phage VP06, complete genome) position: , mismatch: 8, identity: 0.765

acggtattttgattgctcgccacgt---atctgcgct	CRISPR spacer
tcggtaatgtgattgctcgccacgtagaatctaa---	Protospacer
 ***** * ****************   ****.

29. spacer 3.41|2751078|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to JN880423 (Salisaeta icosahedral phage 1, complete genome) position: , mismatch: 8, identity: 0.758

tccgagtgcaacccgcagcttttcgattgcggg	CRISPR spacer
tccgagtgcaacacgaagcttttcaagcgcctc	Protospacer
************ ** ********.* .**

30. spacer 3.85|2753763|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016620 (Microvirga ossetica strain V5/3m plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.758

gcttcagcccggcgatgacatcgccatgttctt	CRISPR spacer
gcagatccgcggcaatgacatcgccatggtctt	Protospacer
**     * ****.************** ****

31. spacer 1.3|41154|32|NZ_CP011542|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017944 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

cacatcggcggcatggagtccattattttcga	CRISPR spacer
gttgtcggcggcatggggtccattcttggcgc	Protospacer
  ..************.******* **  **

32. spacer 1.7|41398|32|NZ_CP011542|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP050084 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b2, complete sequence) position: , mismatch: 9, identity: 0.719

catcatcgacaggtggcgcaaaggcgtagatt	CRISPR spacer
ctccagcgactggtggcgcaaaggcgcatccc	Protospacer
* .** **** ***************.*  ..

33. spacer 1.7|41398|32|NZ_CP011542|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP050104 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence) position: , mismatch: 9, identity: 0.719

catcatcgacaggtggcgcaaaggcgtagatt	CRISPR spacer
ctccagcgactggtggcgcaaaggcgcatccc	Protospacer
* .** **** ***************.*  ..

34. spacer 1.7|41398|32|NZ_CP011542|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025507 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence) position: , mismatch: 9, identity: 0.719

catcatcgacaggtggcgcaaaggcgtagatt	CRISPR spacer
ctccagcgactggtggcgcaaaggcgcatccc	Protospacer
* .** **** ***************.*  ..

35. spacer 1.7|41398|32|NZ_CP011542|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP050109 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence) position: , mismatch: 9, identity: 0.719

catcatcgacaggtggcgcaaaggcgtagatt	CRISPR spacer
ctccagcgactggtggcgcaaaggcgcatccc	Protospacer
* .** **** ***************.*  ..

36. spacer 1.7|41398|32|NZ_CP011542|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP053209 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1A, complete sequence) position: , mismatch: 9, identity: 0.719

catcatcgacaggtggcgcaaaggcgtagatt	CRISPR spacer
ctccagcgactggtggcgcaaaggcgcatccc	Protospacer
* .** **** ***************.*  ..

37. spacer 1.12|41703|32|NZ_CP011542|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP024415 (Lactobacillus plantarum strain ATCC 8014 plasmid pLP39, complete sequence) position: , mismatch: 9, identity: 0.719

ctgctgaagacatcggtattggtatcgtcacc	CRISPR spacer
gcatcaaagacaacggtattggtatcatcact	Protospacer
 .....****** *************.****.

38. spacer 1.12|41703|32|NZ_CP011542|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP018210 (Lactobacillus plantarum strain BLS41 plasmid pLPBLS41_1, complete sequence) position: , mismatch: 9, identity: 0.719

ctgctgaagacatcggtattggtatcgtcacc	CRISPR spacer
gcatcaaagacaacggtattggtatcatcact	Protospacer
 .....****** *************.****.

39. spacer 1.12|41703|32|NZ_CP011542|CRT,PILER-CR,CRISPRCasFinder matches to MG788324 (Lactobacillus phage PM411, complete genome) position: , mismatch: 9, identity: 0.719

ctgctgaagacatcggtattggtatcgtcacc	CRISPR spacer
gcatcaaagacaacggtattggtatcatcact	Protospacer
 .....****** *************.****.

40. spacer 1.12|41703|32|NZ_CP011542|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP053207 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1C, complete sequence) position: , mismatch: 9, identity: 0.719

ctgctgaagacatcggtattggtatcgtcacc	CRISPR spacer
ttgctgaagacatcggtcttgctagggaagac	Protospacer
.**************** *** **  *  . *

41. spacer 3.6|2748953|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050138 (Sphingomonas sp. CL5.1 plasmid pTSSC1, complete sequence) position: , mismatch: 9, identity: 0.727

ccctacaagcgccgaaagaaatacacggcatta	CRISPR spacer
cgcgccaagcgccgcaagaaatacagggccaac	Protospacer
* *  ********* ********** ***

42. spacer 3.19|2749747|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048642 (Streptomyces aureoverticillatus strain HN6 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.727

gcccgcctgctctcgcaggtgctccaactgcac	CRISPR spacer
gatgccctgctctcgcagccgctccaactggta	Protospacer
* .  ************* .**********

43. spacer 3.19|2749747|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to NC_017327 (Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence) position: , mismatch: 9, identity: 0.727

gcccgcctgctctcgcaggtgctccaactgcac	CRISPR spacer
ctccgcctgctctcgcatctgctccatgagcca	Protospacer
 .***************  *******   **

44. spacer 3.19|2749747|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009145 (Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence) position: , mismatch: 9, identity: 0.727

gcccgcctgctctcgcaggtgctccaactgcac	CRISPR spacer
ctccgcctgctctcgcatctgctccatgagcca	Protospacer
 .***************  *******   **

45. spacer 3.19|2749747|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021801 (Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence) position: , mismatch: 9, identity: 0.727

gcccgcctgctctcgcaggtgctccaactgcac	CRISPR spacer
ctccgcctgctctcgcatctgctccatgagcca	Protospacer
 .***************  *******   **

46. spacer 3.19|2749747|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to NC_018683 (Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence) position: , mismatch: 9, identity: 0.727

gcccgcctgctctcgcaggtgctccaactgcac	CRISPR spacer
ctccgcctgctctcgcatctgctccatgagcca	Protospacer
 .***************  *******   **

47. spacer 3.19|2749747|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021809 (Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence) position: , mismatch: 9, identity: 0.727

gcccgcctgctctcgcaggtgctccaactgcac	CRISPR spacer
ctccgcctgctctcgcatctgctccatgagcca	Protospacer
 .***************  *******   **

48. spacer 3.19|2749747|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021217 (Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence) position: , mismatch: 9, identity: 0.727

gcccgcctgctctcgcaggtgctccaactgcac	CRISPR spacer
ctccgcctgctctcgcatctgctccatgagcca	Protospacer
 .***************  *******   **

49. spacer 3.19|2749747|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026526 (Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence) position: , mismatch: 9, identity: 0.727

gcccgcctgctctcgcaggtgctccaactgcac	CRISPR spacer
ctccgcctgctctcgcatctgctccatgagcca	Protospacer
 .***************  *******   **

50. spacer 3.37|2750845|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to MG592415 (Vibrio phage 1.031.O._10N.261.46.F8, partial genome) position: , mismatch: 9, identity: 0.727

ttcccgtagtaatttaccgtgatggatattggg	CRISPR spacer
tacatttagtaacttaccgtgaaggatattaaa	Protospacer
* * . ******.********* *******...

51. spacer 3.80|2753458|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to NC_011879 (Pseudarthrobacter chlorophenolicus A6 plasmid pACHL01, complete sequence) position: , mismatch: 9, identity: 0.727

tgtttcccgcgcccacaacaaccgcaaccaatg	CRISPR spacer
gggcaacctcgcccacatcaaccgcaaccagta	Protospacer
 * .  ** ******** ************.*.

52. spacer 3.85|2753763|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 9, identity: 0.727

gcttcagcccggcgatgacatcgccatgttctt	CRISPR spacer
tcttcagcccggcgatgaccgcgccgggaaccg	Protospacer
 ******************  ****. *  *.

53. spacer 3.85|2753763|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029834 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.727

gcttcagcccggcgatgacatcgccatgttctt	CRISPR spacer
aatacttcccggcgatgacctcgccctgttcgg	Protospacer
. * *  ************ ***** *****

54. spacer 3.88|2753946|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012641 (Massilia sp. WG5 plasmid unnamed 1, complete sequence) position: , mismatch: 9, identity: 0.727

ctgcggaaatttcccggttcgacggtcgcacac	CRISPR spacer
tgacaggcatatcccggttcgacggtcccacat	Protospacer
. .*.*. ** **************** ****.

55. spacer 3.89|2754007|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043832 (Bacillus sp. BS98 plasmid unnamed2) position: , mismatch: 9, identity: 0.727

ctcccgaatttcgacttttccgcctgttgcttt	CRISPR spacer
gtaaggattttcggcttttccgcctgttgttgg	Protospacer
 *   ** *****.***************.*

56. spacer 3.89|2754007|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020434 (Bacillus sp. FDAARGOS_235 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.727

ctcccgaatttcgacttttccgcctgttgcttt	CRISPR spacer
gtaaggattttcggcttttccgcctgttgttgg	Protospacer
 *   ** *****.***************.*

57. spacer 1.10|41581|32|NZ_CP011542|CRT,PILER-CR,CRISPRCasFinder matches to NZ_LN907828 (Erwinia gerundensis isolate E_g_EM595 plasmid pEM01, complete sequence) position: , mismatch: 10, identity: 0.688

acggttggctgagtttaattgcagcctatccg	CRISPR spacer
gcatttgggtgagtttgattgcagcctgatgc	Protospacer
.*. **** *******.**********. .

58. spacer 3.50|2751627|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030786 (Escherichia albertii strain 2012EL-1823B plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.697

tcaatcaaaaccctctcaaactcactcaaaata	CRISPR spacer
aggcccggcaccctctcaaactccctcaaatta	Protospacer
  . .*.. ************** ****** **

59. spacer 3.70|2752848|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to MN871440 (UNVERIFIED: Aeromonas phage AsFcp_1, complete genome) position: , mismatch: 10, identity: 0.697

gtccaacacctcgccgaacgcatctaccaacta	CRISPR spacer
aatagaagcctcggcaaacgcatctaccaactc	Protospacer
. . .* .***** *.****************

60. spacer 3.70|2752848|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to MH791407 (UNVERIFIED: Aeromonas phage AsFcp_4, partial genome) position: , mismatch: 10, identity: 0.697

gtccaacacctcgccgaacgcatctaccaacta	CRISPR spacer
aatagaagcctcggcaaacgcatctaccaactc	Protospacer
. . .* .***** *.****************

61. spacer 3.70|2752848|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to MH791401 (UNVERIFIED: Aeromonas phage AsFcp_2, complete genome) position: , mismatch: 10, identity: 0.697

gtccaacacctcgccgaacgcatctaccaacta	CRISPR spacer
aatagaagcctcggcaaacgcatctaccaactc	Protospacer
. . .* .***** *.****************

62. spacer 3.80|2753458|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013487 (Vibrio alginolyticus strain ATCC 33787 plasmid pMBL287, complete sequence) position: , mismatch: 10, identity: 0.697

tgtttcccgcgcccacaacaaccgcaaccaatg	CRISPR spacer
aacgctcagcgcccccaacaaccacaaccaata	Protospacer
 .. ..* ****** ********.********.

63. spacer 3.80|2753458|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013488 (Vibrio alginolyticus strain ATCC 33787 plasmid pMBL96, complete sequence) position: , mismatch: 10, identity: 0.697

tgtttcccgcgcccacaacaaccgcaaccaatg	CRISPR spacer
aacgctcagcgcccccaacaaccacaaccaata	Protospacer
 .. ..* ****** ********.********.

64. spacer 3.87|2753885|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY349138 (Mycolicibacterium sp. CBMA 213 plasmid pCBMA213_2, complete sequence) position: , mismatch: 10, identity: 0.697

ccctgcgtcatgccaacaccgtcgatctcgaaa	CRISPR spacer
gcctgcgccacgccaacaccgtcgaggaccgcg	Protospacer
 ******.**.**************   * . .

65. spacer 1.12|41703|32|NZ_CP011542|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP022999 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence) position: , mismatch: 11, identity: 0.656

ctgctgaagacatcggtattggtatcgtcacc	CRISPR spacer
agattgaagacaacggtattggcatcgggcgt	Protospacer
  ..******** *********.****    .

66. spacer 3.36|2750784|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049249 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence) position: , mismatch: 11, identity: 0.667

ttaatttataagggtcgccttatagatagtgcg	CRISPR spacer
gctctttacaagggtcgcctaatagatatgaga	Protospacer
 .  ****.*********** *******  . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

224304 : 232452

Corynebacterium_phage(57.14%)

integrase

attL 224211:224225|attR 233819:233833

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
224211:224225	attL	NA	NA	NA	NA
WP_047260950.1\|224304_225828_-	adenylate/guanylate cyclase domain-containing protein	A0A1B1IWY2	uncultured_Mediterranean_phage	1.4e-19	31.7
WP_083987665.1\|225925_227098_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	4.4e-05	25.2
WP_052844459.1\|227492_228038_+	ImmA/IrrE family metallo-endopeptidase	A0A142KB62	Gordonia_phage	3.3e-24	39.3
WP_047260951.1\|228037_228553_+	hypothetical protein	NA	NA	NA	NA
WP_047260952.1\|228554_229745_-\|integrase	site-specific integrase	A0A1W6JRD7	Corynebacterium_phage	4.2e-128	54.7
WP_047260953.1\|229753_229993_-	hypothetical protein	A0A1W6JRB8	Corynebacterium_phage	9.1e-19	56.3
WP_158408177.1\|230189_230327_-	hypothetical protein	NA	NA	NA	NA
WP_052844460.1\|230447_230867_-	hypothetical protein	NA	NA	NA	NA
WP_047260954.1\|230863_231478_-	DUF433 domain-containing protein	A0A1W6JRB2	Corynebacterium_phage	7.8e-46	48.8
WP_052844462.1\|232059_232452_-	ImmA/IrrE family metallo-endopeptidase	A0A1W6JQ88	Corynebacterium_phage	2.8e-17	40.2
233819:233833	attR	NA	NA	NA	NA

DBSCAN-SWA_2

238465 : 260115

Corynebacterium_phage(100.0%)

terminase,tail,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047260967.1\|238465_239539_+	HNH endonuclease	A0A1W6JRD2	Corynebacterium_phage	4.4e-68	45.7
WP_047260968.1\|239751_240324_+	hypothetical protein	NA	NA	NA	NA
WP_047260969.1\|240645_240861_+	hypothetical protein	NA	NA	NA	NA
WP_158408181.1\|240832_241156_+	HNH endonuclease	A0A220NQT8	Corynebacterium_phage	9.8e-16	55.7
WP_083987667.1\|241582_242083_+	hypothetical protein	A0A220NQN1	Corynebacterium_phage	1.4e-53	66.2
WP_047260971.1\|242042_242477_+	hypothetical protein	A0A220NQN4	Corynebacterium_phage	1.3e-47	67.9
WP_047260972.1\|242499_244137_+\|terminase	terminase	A0A220NQP0	Corynebacterium_phage	3.7e-220	66.3
WP_144414089.1\|244133_245519_+\|portal	phage portal protein	A0A220NQP2	Corynebacterium_phage	1.6e-163	61.9
WP_047260974.1\|245536_246958_+	hypothetical protein	A0A220NQN8	Corynebacterium_phage	1.3e-67	40.4
WP_047260975.1\|246954_247293_+	hypothetical protein	NA	NA	NA	NA
WP_047260976.1\|247366_247906_+	hypothetical protein	A0A220NQQ3	Corynebacterium_phage	1.6e-15	49.4
WP_052844465.1\|247926_248295_+	DUF2190 family protein	A0A220NQQ0	Corynebacterium_phage	2.6e-20	59.8
WP_047260977.1\|248310_249216_+	hypothetical protein	A0A220NQP6	Corynebacterium_phage	5.6e-101	59.5
WP_047260978.1\|249218_249611_+	hypothetical protein	NA	NA	NA	NA
WP_047260979.1\|249614_249923_+	hypothetical protein	NA	NA	NA	NA
WP_047260980.1\|249922_250240_+	hypothetical protein	A0A220NQP5	Corynebacterium_phage	1.3e-09	40.6
WP_047260981.1\|250249_250672_+	hypothetical protein	NA	NA	NA	NA
WP_047260982.1\|250724_251657_+	hypothetical protein	A0A220NQQ6	Corynebacterium_phage	2.9e-68	47.4
WP_047260983.1\|251737_252124_+	hypothetical protein	A0A220NQP7	Corynebacterium_phage	2.8e-25	51.3
WP_144414090.1\|252270_252537_+	hypothetical protein	NA	NA	NA	NA
WP_144414248.1\|253667_257189_+	transglycosylase SLT domain-containing protein	A0A220NQR0	Corynebacterium_phage	2.6e-178	45.3
WP_047260986.1\|257202_258069_+\|tail	phage tail family protein	A0A220NQR1	Corynebacterium_phage	1.6e-92	57.6
WP_047260987.1\|258075_259716_+	hypothetical protein	A0A220NQQ5	Corynebacterium_phage	2.1e-186	56.9
WP_047260988.1\|259716_260115_+	DUF2744 domain-containing protein	A0A220NQQ4	Corynebacterium_phage	4.3e-37	57.1

DBSCAN-SWA_3

919373 : 929756

Gordonia_phage(44.44%)

capsid,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083987411.1\|919373_919775_+	bifunctional DNA primase/polymerase	A0A1D8ETM8	Propionibacterium_phage	8.7e-30	51.6
WP_144414123.1\|919790_920222_+	hypothetical protein	A0A162E1R7	Tsukamurella_phage	2.6e-24	52.5
WP_047261487.1\|922016_923486_+\|portal	phage portal protein	A0A142KBU0	Gordonia_phage	5.4e-61	34.4
WP_052844522.1\|923510_924842_+	hypothetical protein	A0A2H4PEX4	Gordonia_phage	5.7e-09	32.6
WP_144414124.1\|924838_925195_+	hypothetical protein	NA	NA	NA	NA
WP_052844523.1\|925330_925882_+	hypothetical protein	NA	NA	NA	NA
WP_047261489.1\|925935_926319_+	hypothetical protein	Q6VY52	Streptomyces_phage	2.7e-12	42.3
WP_047261490.1\|926318_927359_+\|capsid	major capsid protein	A0A166XYQ6	Gordonia_phage	7.2e-52	37.4
WP_047261491.1\|927373_927661_+	hypothetical protein	NA	NA	NA	NA
WP_047263768.1\|927644_928019_+	hypothetical protein	A0A2P1A0R2	Gordonia_phage	2.4e-05	35.7
WP_083987691.1\|928075_928381_+	hypothetical protein	A0A2H4J5S1	uncultured_Caudovirales_phage	4.3e-13	46.2
WP_047261492.1\|928377_928581_+	hypothetical protein	NA	NA	NA	NA
WP_047261493.1\|928555_928789_+	hypothetical protein	NA	NA	NA	NA
WP_047261494.1\|928785_929133_+	hypothetical protein	NA	NA	NA	NA
WP_047261495.1\|929162_929756_+	hypothetical protein	A0A2H4JC28	uncultured_Caudovirales_phage	4.0e-55	57.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP011543

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011543_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011543_1

29543-29693

Orphan

I-C,I-E,II-B

Consensus_repeat	Method
GATATTCCCCGCATAAGCGGGGGTGAACC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP011543_1

>merge|NZ_CP011543|1|29543-29693|PILER-CR
GATATTCCCTGCATAAGCGGGGGTGAACCGTTGATGAGAATGGTGAAAAAGTTGGGCCGCCTATATTCCCCGCATAAGCGGGGGTGAACCCGCCCGGTATCTGGTTGTGAACGAGCAAGCTGGATATTCCCCGCATAAGCGGGGGTGAACC

>NZ_CP011543|1|1|29543-29693|PILER-CR
GATATTCCCTGCATAAGCGGGGGTGAACC	GTTGATGAGAATGGTGAAAAAGTTGGGCCGCC
TATATTCCCCGCATAAGCGGGGGTGAACC	CGCCCGGTATCTGGTTGTGAACGAGCAAGCTG
GATATTCCCCGCATAAGCGGGGGTGAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011543.1\|WP_047263752.1\|35212_35845_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011543.1\|WP_047263754.1\|37095_37398_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011543.1\|WP_047263751.1\|34905_35187_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011543.1\|WP_047263750.1\|34254_34893_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|222854
NZ_CP011543.1\|WP_047263753.1\|35914_36949_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|368892
NZ_CP011543.1\|WP_047263748.1\|33364_33541_-\|transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP011543.1\|WP_047263762.1\|22736_23012_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011543.1\|WP_158408252.1\|33712_33943_-\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|222853
NZ_CP011543.1\|WP_047263747.1\|32686_33286_+\|Eco29kI-family-restriction-endonuclease	unknown	unknown	gnl\|CDD\|370543
NZ_CP011543.1\|WP_083987810.1\|28892_29057_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|133390
NZ_CP011543.1\|WP_047263744.1\|23998_25672_-\|cutinase-family-protein	unknown	unknown	gnl\|CDD\|366455
NZ_CP011543.1\|WP_083987812.1\|29987_30899_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|309782
NZ_CP011543.1\|WP_047263743.1\|23021_23327_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011543.1\|WP_158408251.1\|26361_27396_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237537
NZ_CP011543.1\|WP_047263746.1\|31496_32690_+\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|365904
NZ_CP011543.1\|WP_047263742.1\|22082_22703_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011543.1\|WP_052844870.1\|27835_28903_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379352
NZ_CP011543.1\|WP_144414291.1\|29200_29512_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP011543.1\|WP_047263745.1\|25686_26340_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011543.1\|WP_052844868.1\|23354_23999_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP011543.1\|WP_047263753.1\|35914_36949_+\|AAA-family-ATPase	gnl\|CDD\|368892	pfam06414, Zeta_toxin, Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.	8.65068e-34
NZ_CP011543.1\|WP_047263748.1\|33364_33541_-\|transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.46868e-10
NZ_CP011543.1\|WP_083987812.1\|29987_30899_+\|hypothetical-protein	gnl\|CDD\|309782	pfam04796, RepA_C, Plasmid encoded RepA protein. Family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood.	1.87665e-52
NZ_CP011543.1\|WP_158408252.1\|33712_33943_-\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.88645e-19
NZ_CP011543.1\|WP_047263747.1\|32686_33286_+\|Eco29kI-family-restriction-endonuclease	gnl\|CDD\|370543	pfam09517, RE_Eco29kI, Eco29kI restriction endonuclease. This family includes the Eco29kI (recognizes and cleaves CCGC^GG ) restriction endonuclease.	4.57081e-81
NZ_CP011543.1\|WP_083987810.1\|28892_29057_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|133390	cd04762, HTH_MerR-trunc, Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.	8.13828e-11
NZ_CP011543.1\|WP_047263744.1\|23998_25672_-\|cutinase-family-protein	gnl\|CDD\|366455	pfam01083, Cutinase, Cutinase.	9.22634e-06
NZ_CP011543.1\|WP_047263750.1\|34254_34893_+\|AAA-family-ATPase	gnl\|CDD\|222854	PHA02518, PHA02518, ParA-like protein; Provisional.	9.25486e-31
NZ_CP011543.1\|WP_158408251.1\|26361_27396_-\|hypothetical-protein	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	3.15084e-06
NZ_CP011543.1\|WP_047263746.1\|31496_32690_+\|DNA-cytosine-methyltransferase	gnl\|CDD\|365904	pfam00145, DNA_methylase, C-5 cytosine-specific DNA methylase.	9.19118e-58
NZ_CP011543.1\|WP_052844870.1\|27835_28903_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379352	pfam13730, HTH_36, Helix-turn-helix domain.	1.41899e-13
NZ_CP011543.1\|WP_144414291.1\|29200_29512_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.00217397

>NZ_CP011543.1|WP_144414291.1|29200_29512_+|helix-turn-helix-transcriptional-regulator
MHTAPQTPRAWSPNACVGKTVSHLLLDRRTTKKELGAALGITGVAIGRKVRGDIGWSLSDLIHVADFFTIDVADLLPIQNPDWKEGDDEQFRWLPAPVKPPKT
>NZ_CP011543.1|WP_083987810.1|28892_29057_-|helix-turn-helix-domain-containing-protein
MKGYSTREVADLLEVPVRTIQGWVSAGRIPGAFRTPGGRWRIPAAWVGGGVGEC
>NZ_CP011543.1|WP_052844870.1|27835_28903_-|helix-turn-helix-domain-containing-protein
MSVKAVAWVLDDLQGLKPGPTLVMLALADFADERNSCFPGQSTIAARARCSKRSVVTYLKELEELGLITVESRFFSNGGSSIRRSSNRYVLHVGRSFGLDDAKSAHSRKTPVQNECADFSHSTLESANSPLSKVQQVALIEPPVIEPTSPLPPVNVSGGGLSGVGEEDFSPMDGDRLGAGAPADGEFRFGFAFDAVAQRPDGEGAFPTSSVSGLGADRRLCDEVVPPGLVSGLSGHDVSRVSARVRELLAAGWSRERLRECVARRPLPERVFSPVGLVLSRLRDDVSACGDSTSEVASGFEWRTAAGRRVKRYEVDWSRVLAVHRRALAAGETVTEHRAEFLWELTGGVVDDFLI
>NZ_CP011543.1|WP_158408251.1|26361_27396_-|hypothetical-protein
MSGFSRVVAVAVAVGVVGAGSVVPVVAAPRVATQPGTDRPRVVAPVNTPVVQRAPQAPAVPAVVTNVVPGVTRAAAQPVVVRNYVTQEVYVTSPGLALASPGGAVVLNPVNVINTFERNVRPEDRSTMDAARGAAGVGAVAGGVGGGAAGALVGAGVGAAAGVGASGAICGAAAGTAAAAGAVAIAAPPTAPIAGPVAAGAASAVAACAAGGMAVGPIIGGAVGAGAGVPVGVVPGVVAGAQLGASAVPGGRAVMDRAIADTAWDLESQARVAQGAEPLSGAKPGDSMPGAGADAVPAVGSSVPALPQLPELPAVSVPVVDVQLPQVPEVPGVVLPGLPPVLGV
>NZ_CP011543.1|WP_047263745.1|25686_26340_-|hypothetical-protein
MATSWFDIADERDAAAAADDVVEVVVDSPAADGVPAGGRFSRVVWVGFGVLLAVSVVGVVWSLQSQRMWVEPVSVSSSVVEVPPSVAVSSSSSSVPVSSVVVERCPGQPVGSLSSPEGVVVEFQEAYFAGDVERIASVVASGSYLASVDWGTVVSDVVGSEFCVKVEGVSGGVVDAATTVVTPGGEELLFMQKVTVVEVGGGFRILEIEDRPVPSTS
>NZ_CP011543.1|WP_047263744.1|23998_25672_-|cutinase-family-protein
MRHFGVVGLAVLLVSAAVPAVAQSGVSGGRECPRMHMVVVHDAADSAALSDQDHGFLGSIVKPVVDAANPGVKDYSAGFSAAASSVAQPVPSVSGGWKKDVWGTSAPAAASSAATTAPAVSSSVVGSTGVSTTQEQQNDGVAQVSRTYVNVEGFRTGAFIPGVHSETDASWRDHVDGGLKKTSAVVEEIHRTCPDTKLVLLGNSQGAAVVSELARSIGAGEGPVPSSVIAGVATFADPTRAEDWPTTTDRSNAVVKAPAASGQGLATVAEGSASRGYGSLEGKTVSWCVEGDTRCGIKKAAPAVRLAEAANREVDFARNPEASLRYVADVLAPAVALASVETLAEDVQFGGSGFRFSRAASADETLIGRIAVNTESSVDRSDMDRRLVAAGAQLGGMALAAGVTVAKKVITPANIAQIAAASAAGPEAAAVVVGVKVIEAGASLFTAETATSGAVRLLDEAKAGGMEVPEVAEAAVETVVGEAIGDSAYVNQPITDRGQSASGATKTWLAGLAAKELGDDAPEGLVAASRSPEKVSGVRFDKAAVDAAVAGLRKDQG
>NZ_CP011543.1|WP_052844868.1|23354_23999_-|hypothetical-protein
MAAVLSSINLVAGGLLPVCEEPLWTAVVCEGDSSSFSPAFWLVGAHGGAGCSVLAEMLGPAGDAGQRWPSADEFPLCVVVARASVRELERAHQVVLQGLGGEIGAARLLGLVVVHHVPGKLPKPVRDKLEVLEALTSVWVVPFISGLQVAPLDGLAVWVPGDQVGGGRRRDRKKPVVEQVPPAVVEFGAAVFQAARDAARGAGGSDDEKCCESN
>NZ_CP011543.1|WP_047263743.1|23021_23327_-|hypothetical-protein
MVKSLVDVWDVVSVRLMLAQIPGQNIQPQAPGEFGAKIERGLNFAFYVGIAIAIVGVIIAGATMVISRREGTSEEATAMALRIGFGAMIMGGATTIISAFL
>NZ_CP011543.1|WP_047263762.1|22736_23012_-|hypothetical-protein
MVVLLRAVHPPTSPWTPPASVTNEVVVWLGYVMYVALAISILATIMLGVMMVLDRDRGEPVSATAPYVAALRIALGTMIISSAGSLAAFFA
>NZ_CP011543.1|WP_047263742.1|22082_22703_-|hypothetical-protein
MRLRLGICGVAVAVVAGCGAEDGSEQQPLESAVVHTTTAPVVSWRPGPSGLVVPVSSVDGPRESVPVPHGFSHSPQGAVLAAITAQAWMAGANDSTWPKVAEYLLEPGLGRTQWSQARALMSVDGVVADPARFVGFRFDSYSDDAAVVVVATRWPDGLVTAYPVQLSHATGSWRVVVPEQDKAPDMQELTEDQLKDFVLFGETENK
>NZ_CP011543.1|WP_083987812.1|29987_30899_+|hypothetical-protein
MSNDNKFSPQPANTPIATTDTEIGYTSNLFVQALFPYKKSTDTIRAVHNGPNTITVLSINGVPYGKYPRLIMAYIITQAVENAGKVRHGLMTEEEARRIPLGHSMNGFLEKIGITTRGTGGSKGTLTILREQMLRIASSVITVQRRTENRTLGKNSPIIDQWDLWFDPGNPDQVALEESYIMLTKEFYERIKNAPIPIDLNIFRELGKPRAMDLYVWLTLKKYWLHNRPETQYQFTWSDMAANFATKKLTTTQDLAHFRQEIKKSIATILTHWPDAGITADTTGVTIHAGQPSITIKPPHQLP
>NZ_CP011543.1|WP_047263746.1|31496_32690_+|DNA-cytosine-methyltransferase
MRSVELFAGGGGLALGTHLGGFSTEVVAEWDSWSCETLRVNSSLGHPLVRGIDIRESDVRTIDWSNLTPGIDLVSGGPPCQPFSMGGKAMAAEDPRDMFPVTAEVIRQLQPRAFMIENVRGLTRPAFANYFSYIQLRLAHPDITPRSSESWSDHYARLQAEHTSVHTDLQYRVVTQLVNAANYGIPQQRWRVFFIGFRCDIDAEWSFPEPTHSAAALKAAQESGEYWDTYSVPKSQRHTEIRGGGDPTLRPWRTVRDALVGLPEPTEKGSTRFLNHTFQPGARSYPGHTGSFIDAPAKALKAGVHGVPGGENMLRRANGSVRYFSVREAARLQTFPDRYRLNGPWTEAMRQLGNAVPVRLAQIIAASIHEHLELASIREHIALRQLTLDTPLPRINS
>NZ_CP011543.1|WP_047263747.1|32686_33286_+|Eco29kI-family-restriction-endonuclease
MTKPFNPLDMHNLAASIVTQLEETDPHPLHELKKFLGAGIYALYYTGPFPAYSLLTKRNTPRCTEPIYIGKAVPSGGRRGITVETHTTALYKRLNDHAKSIRAAENLDISHFRVQWLVMEDIWIPLGESAMIRRHTPVWNALLDGFGNHDPGKGRINGIRSKWDTLHPGRSWAEKFPSNPESPAAIAQEVTEYLRSRLA
>NZ_CP011543.1|WP_047263748.1|33364_33541_-|transposase
MSSRKMSTAPYKNELINPHRWVDAVEVEIATFQWVTWWNETRLEENLGYRTPVEVEIE
>NZ_CP011543.1|WP_158408252.1|33712_33943_-|DDE-type-integrase/transposase/recombinase
MRSVPGKAPITTRKGTQADTRPDVVNREFTASCPNHLWVADITYVRTTKGFVYTAFVTDVFSRTIIGWALSDSLRT
>NZ_CP011543.1|WP_047263750.1|34254_34893_+|AAA-family-ATPase
MIVVIGNQKGGVGKSTLTVNLATAWQSQGKHVVIVEADPSVFTVSRWSDDREEAGLTPILTIKKTGRLAEALRNLNDQYDMVIVDLPGKDSPEMRSALIVADVFLLPTQPSQADIDATIDLKTSVLADYIDINPAMKVLVVLNRAATHAWNTESTEARDVLQDDFDAILHTVIHERKAYRSTLSTGSGVIEGDDKKAATEITDLAHEIISST
>NZ_CP011543.1|WP_047263751.1|34905_35187_+|hypothetical-protein
MAIKARKKAPTNDIEADLMAKAEATPISRTVEERIATRAEGRYFTLLTYRGTEEQKDLIDFAAATERMSIQKLLEGIIMPYLEEKYGENFDNQ
>NZ_CP011543.1|WP_047263752.1|35212_35845_+|hypothetical-protein
MDTFDYTLFDVTKEAGSHLGAIYTHLSVTAPTKPESSWWRMKAWAMKSFPTSMHFTHRDEMKRAIALINTEIEFLNTTYGEQLDLLRQKENADKLQKIQDTKDLPFEYEGIRLDPELKNKVYETARNLRTLYTHLAVSSPTTVEEHWWMLKLSEMAHFPINIGLRSEEIMTALITMMQTEDNFLTTTYHDQLAALDNSIVASLATQRRNT
>NZ_CP011543.1|WP_047263753.1|35914_36949_+|AAA-family-ATPase
MLTAKDFLVSQKDKEDILQDYFEEKLDLVSPNENPQVFFIGGQPAAGKSQLIERIQEDFDGAFVIDSDELRQRHPQINEIINHDPLRMDVLSNEPVGYWFKTCIDEAKKRRCNIIIENSFTQSQVLIDEAHRFLNDNYHVSFFAIATPEEISRLGIIGRYKNAVEQNRLPRWTTSASHDNAYNKMSGVITEILNSPITDTVHITSRDQTLTHRITNPNEVETTVTHIRHQTLTNHPLDTWAQTYAECITFMHDHNLITNYTQPLLTQLHHDAEKLLPTTQLPHEHTQLANTLHTINNPYPLNTSLLENPHHITQPATQNENTITHENHNNPTQELTTPTTDMEL
>NZ_CP011543.1|WP_047263754.1|37095_37398_-|hypothetical-protein
MENFTKKATTVAIIALALAGVMAPPASAQGQAWNEECYKGVWADTMGVAYDRVSKTIDPNTFAPHSTVEGITEYIKASLAVHPALSSYASGSTVHCSSQS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP011543_1	1.1\|29572\|32\|NZ_CP011543\|PILER-CR	29572-29603	32	NZ_CP011543	Corynebacterium mustelae strain DSM 45274 plasmid pCmus45274, complete sequence	29572-29603	0	1.0
NZ_CP011543_1	1.2\|29633\|32\|NZ_CP011543\|PILER-CR	29633-29664	32	NZ_CP011543	Corynebacterium mustelae strain DSM 45274 plasmid pCmus45274, complete sequence	29633-29664	0	1.0
NZ_CP011543_1	1.1\|29572\|32\|NZ_CP011543\|PILER-CR	29572-29603	32	MH791398	UNVERIFIED: Aeromonas phage Asswx_1, complete genome	65507-65538	8	0.75
NZ_CP011543_1	1.1\|29572\|32\|NZ_CP011543\|PILER-CR	29572-29603	32	MN871442	UNVERIFIED: Aeromonas phage Aszh-1, complete genome	191259-191290	8	0.75
NZ_CP011543_1	1.1\|29572\|32\|NZ_CP011543\|PILER-CR	29572-29603	32	KY883634	Vibrio phage JSF5, complete genome	22322-22353	10	0.688
NZ_CP011543_1	1.1\|29572\|32\|NZ_CP011543\|PILER-CR	29572-29603	32	HQ641354	Vibrio phage ICP1_2004_A, complete genome	68013-68044	10	0.688
NZ_CP011543_1	1.1\|29572\|32\|NZ_CP011543\|PILER-CR	29572-29603	32	MH310934	Vibrio phage ICP1_2006_E, complete genome	68425-68456	10	0.688
NZ_CP011543_1	1.1\|29572\|32\|NZ_CP011543\|PILER-CR	29572-29603	32	HQ641353	Vibrio phage ICP1_2001_A, complete genome	62618-62649	10	0.688
NZ_CP011543_1	1.1\|29572\|32\|NZ_CP011543\|PILER-CR	29572-29603	32	HQ641352	Vibrio phage ICP1_2005_A, complete genome	68275-68306	10	0.688
NZ_CP011543_1	1.1\|29572\|32\|NZ_CP011543\|PILER-CR	29572-29603	32	NC_048827	Vibrio phage vB_VchM_Kuja, complete genome	115392-115423	10	0.688
NZ_CP011543_1	1.1\|29572\|32\|NZ_CP011543\|PILER-CR	29572-29603	32	HQ641350	Vibrio phage ICP1_2006_B, complete genome	62004-62035	10	0.688
NZ_CP011543_1	1.1\|29572\|32\|NZ_CP011543\|PILER-CR	29572-29603	32	MN402506	Vibrio phage VMJ710, complete genome	29396-29427	10	0.688
NZ_CP011543_1	1.1\|29572\|32\|NZ_CP011543\|PILER-CR	29572-29603	32	HQ641351	Vibrio phage ICP1_2006_A, complete genome	62011-62042	10	0.688
NZ_CP011543_1	1.1\|29572\|32\|NZ_CP011543\|PILER-CR	29572-29603	32	MH310936	Vibrio phage ICP1, complete genome	60120-60151	10	0.688
NZ_CP011543_1	1.1\|29572\|32\|NZ_CP011543\|PILER-CR	29572-29603	32	KY065147	Vibrio phage JSF4, complete genome	9162-9193	10	0.688
NZ_CP011543_1	1.1\|29572\|32\|NZ_CP011543\|PILER-CR	29572-29603	32	MN855619	Siphoviridae sp. isolate 157, complete genome	8390-8421	11	0.656

1. spacer 1.1|29572|32|NZ_CP011543|PILER-CR matches to NZ_CP011543 (Corynebacterium mustelae strain DSM 45274 plasmid pCmus45274, complete sequence) position: , mismatch: 0, identity: 1.0

gttgatgagaatggtgaaaaagttgggccgcc	CRISPR spacer
gttgatgagaatggtgaaaaagttgggccgcc	Protospacer
********************************

2. spacer 1.2|29633|32|NZ_CP011543|PILER-CR matches to NZ_CP011543 (Corynebacterium mustelae strain DSM 45274 plasmid pCmus45274, complete sequence) position: , mismatch: 0, identity: 1.0

cgcccggtatctggttgtgaacgagcaagctg	CRISPR spacer
cgcccggtatctggttgtgaacgagcaagctg	Protospacer
********************************

3. spacer 1.1|29572|32|NZ_CP011543|PILER-CR matches to MH791398 (UNVERIFIED: Aeromonas phage Asswx_1, complete genome) position: , mismatch: 8, identity: 0.75

gttgatgagaatggtgaaaaagttg--ggccgcc	CRISPR spacer
gttgatgagaacggtaaaaaagttattggtga--	Protospacer
***********.***.********.  **. .

4. spacer 1.1|29572|32|NZ_CP011543|PILER-CR matches to MN871442 (UNVERIFIED: Aeromonas phage Aszh-1, complete genome) position: , mismatch: 8, identity: 0.75

gttgatgagaatggtgaaaaagttg--ggccgcc	CRISPR spacer
gttgatgagaacggtaaaaaagttattggtga--	Protospacer
***********.***.********.  **. .

5. spacer 1.1|29572|32|NZ_CP011543|PILER-CR matches to KY883634 (Vibrio phage JSF5, complete genome) position: , mismatch: 10, identity: 0.688

gttgatgagaatggtgaaaaagttgggccgcc	CRISPR spacer
ctgaatgtgaatggtgtaaaagttggggataa	Protospacer
 * .*** ******** **********

6. spacer 1.1|29572|32|NZ_CP011543|PILER-CR matches to HQ641354 (Vibrio phage ICP1_2004_A, complete genome) position: , mismatch: 10, identity: 0.688

gttgatgagaatggtgaaaaagttgggccgcc	CRISPR spacer
ctgaatgtgaatggtgtaaaagttggggataa	Protospacer
 * .*** ******** **********

7. spacer 1.1|29572|32|NZ_CP011543|PILER-CR matches to MH310934 (Vibrio phage ICP1_2006_E, complete genome) position: , mismatch: 10, identity: 0.688

gttgatgagaatggtgaaaaagttgggccgcc	CRISPR spacer
ctgaatgtgaatggtgtaaaagttggggataa	Protospacer
 * .*** ******** **********

8. spacer 1.1|29572|32|NZ_CP011543|PILER-CR matches to HQ641353 (Vibrio phage ICP1_2001_A, complete genome) position: , mismatch: 10, identity: 0.688

gttgatgagaatggtgaaaaagttgggccgcc	CRISPR spacer
ctgaatgtgaatggtgtaaaagttggggataa	Protospacer
 * .*** ******** **********

9. spacer 1.1|29572|32|NZ_CP011543|PILER-CR matches to HQ641352 (Vibrio phage ICP1_2005_A, complete genome) position: , mismatch: 10, identity: 0.688

gttgatgagaatggtgaaaaagttgggccgcc	CRISPR spacer
ctgaatgtgaatggtgtaaaagttggggataa	Protospacer
 * .*** ******** **********

10. spacer 1.1|29572|32|NZ_CP011543|PILER-CR matches to NC_048827 (Vibrio phage vB_VchM_Kuja, complete genome) position: , mismatch: 10, identity: 0.688

gttgatgagaatggtgaaaaagttgggccgcc	CRISPR spacer
gctgttgaaaatggtgaaaaagttgttttatg	Protospacer
*.** ***.****************  ....

11. spacer 1.1|29572|32|NZ_CP011543|PILER-CR matches to HQ641350 (Vibrio phage ICP1_2006_B, complete genome) position: , mismatch: 10, identity: 0.688

gttgatgagaatggtgaaaaagttgggccgcc	CRISPR spacer
ctgaatgtgaatggtgtaaaagttggggataa	Protospacer
 * .*** ******** **********

12. spacer 1.1|29572|32|NZ_CP011543|PILER-CR matches to MN402506 (Vibrio phage VMJ710, complete genome) position: , mismatch: 10, identity: 0.688

gttgatgagaatggtgaaaaagttgggccgcc	CRISPR spacer
ctgaatgtgaatggtgtaaaagttggggataa	Protospacer
 * .*** ******** **********

13. spacer 1.1|29572|32|NZ_CP011543|PILER-CR matches to HQ641351 (Vibrio phage ICP1_2006_A, complete genome) position: , mismatch: 10, identity: 0.688

gttgatgagaatggtgaaaaagttgggccgcc	CRISPR spacer
ctgaatgtgaatggtgtaaaagttggggataa	Protospacer
 * .*** ******** **********

14. spacer 1.1|29572|32|NZ_CP011543|PILER-CR matches to MH310936 (Vibrio phage ICP1, complete genome) position: , mismatch: 10, identity: 0.688

gttgatgagaatggtgaaaaagttgggccgcc	CRISPR spacer
ctgaatgtgaatggtgtaaaagttggggataa	Protospacer
 * .*** ******** **********

15. spacer 1.1|29572|32|NZ_CP011543|PILER-CR matches to KY065147 (Vibrio phage JSF4, complete genome) position: , mismatch: 10, identity: 0.688

gttgatgagaatggtgaaaaagttgggccgcc	CRISPR spacer
ctgaatgtgaatggtgtaaaagttggggataa	Protospacer
 * .*** ******** **********

16. spacer 1.1|29572|32|NZ_CP011543|PILER-CR matches to MN855619 (Siphoviridae sp. isolate 157, complete genome) position: , mismatch: 11, identity: 0.656

gttgatgagaatggtgaaaaagttgggccgcc	CRISPR spacer
gttaatgagaatggagaaaaagtgaaagtaaa	Protospacer
***.********** ******** ... ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 9705

Mycobacterium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047263728.1\|907_2680_+	TraM recognition domain-containing protein	NA	NA	NA	NA
WP_052844865.1\|2833_3649_-	hypothetical protein	NA	NA	NA	NA
WP_047263729.1\|3875_4457_+	ParA family protein	W0LIU2	Mycobacterium_phage	2.4e-36	47.1
WP_047263730.1\|4465_4717_+	hypothetical protein	NA	NA	NA	NA
WP_047263732.1\|5597_5906_-	hypothetical protein	NA	NA	NA	NA
WP_052844866.1\|6096_9705_+	relaxase domain-containing protein	V5UQN3	Mycobacterium_phage	2.9e-23	21.6

DBSCAN-SWA_2

14128 : 15664

Corynebacterium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052844867.1\|14128_15664_-	peptidoglycan DD-metalloendopeptidase family protein	A0A1W6JQH9	Corynebacterium_phage	7.5e-29	50.7

DBSCAN-SWA_3

27835 : 34893

Moraxella_phage(25.0%)

integrase,transposase

attL 23881:23896|attR 37819:37834

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
23881:23896	attL	NA	NA	NA	NA
WP_052844870.1\|27835_28903_-	helix-turn-helix domain-containing protein	A0A0R6PHP4	Moraxella_phage	4.0e-05	41.2
WP_083987810.1\|28892_29057_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_144414291.1\|29200_29512_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_083987812.1\|29987_30899_+	hypothetical protein	NA	NA	NA	NA
WP_047263746.1\|31496_32690_+	DNA cytosine methyltransferase	F2Y148	Organic_Lake_phycodnavirus	1.1e-24	27.7
WP_047263747.1\|32686_33286_+	Eco29kI family restriction endonuclease	NA	NA	NA	NA
WP_047263748.1\|33364_33541_-\|transposase	transposase	NA	NA	NA	NA
WP_158408252.1\|33712_33943_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A1B3AZE5	Gordonia_phage	2.9e-14	53.9
WP_047263750.1\|34254_34893_+	AAA family ATPase	E5FFJ3	Burkholderia_phage	2.2e-11	29.6
37819:37834	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP011544

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

14077 : 34847

Gordonia_phage(29.41%)

portal,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047261495.1\|14077_14671_-	hypothetical protein	A0A2H4JC28	uncultured_Caudovirales_phage	4.0e-55	57.2
WP_047261494.1\|14700_15048_-	hypothetical protein	A0A0U4B5G0	Arthrobacter_phage	9.9e-06	37.0
WP_047261493.1\|15044_15278_-	hypothetical protein	NA	NA	NA	NA
WP_047261492.1\|15252_15456_-	hypothetical protein	NA	NA	NA	NA
WP_083987691.1\|15452_15758_-	hypothetical protein	A0A2H4J5S1	uncultured_Caudovirales_phage	4.3e-13	46.2
WP_047263768.1\|15814_16189_-	hypothetical protein	A0A2P1A0R2	Gordonia_phage	2.4e-05	35.7
WP_047261491.1\|16172_16460_-	hypothetical protein	NA	NA	NA	NA
WP_047261490.1\|16474_17515_-\|capsid	major capsid protein	A0A166XYQ6	Gordonia_phage	7.2e-52	37.4
WP_047261489.1\|17514_17898_-	hypothetical protein	A0A160DEN0	Gordonia_phage	2.1e-17	37.0
WP_052844523.1\|17951_18503_-	hypothetical protein	NA	NA	NA	NA
WP_144414124.1\|18638_18995_-	hypothetical protein	NA	NA	NA	NA
WP_052844522.1\|18991_20323_-	hypothetical protein	A0A2H4PEX4	Gordonia_phage	5.7e-09	32.6
WP_047261487.1\|20347_21817_-\|portal	phage portal protein	A0A161HSN6	Gordonia_phage	1.1e-72	37.8
WP_144414123.1\|23611_24043_-	hypothetical protein	A0A162E1R7	Tsukamurella_phage	2.6e-24	52.5
WP_083987411.1\|24058_24460_-	bifunctional DNA primase/polymerase	A0A1D8ETM8	Propionibacterium_phage	8.7e-30	51.6
WP_047261484.1\|24906_25194_-	HNH endonuclease	A0A097EWJ7	Mycobacterium_phage	2.7e-09	45.8
WP_047261483.1\|25303_25912_-	hypothetical protein	NA	NA	NA	NA
WP_047261482.1\|25908_26184_-	hypothetical protein	A0A1W6JQD4	Corynebacterium_phage	1.1e-07	45.7
WP_047261481.1\|26180_27536_-	DEAD/DEAH box helicase	A0A1W6JQF1	Corynebacterium_phage	1.4e-175	67.1
WP_047261480.1\|27486_27798_-	VRR-NUC domain-containing protein	A0A1W6JQA8	Corynebacterium_phage	2.7e-23	59.3
WP_047263365.1\|28043_30455_-	phage-like protein	A0A1W6JQ82	Corynebacterium_phage	4.1e-284	58.6
WP_047261479.1\|30575_30818_-	hypothetical protein	NA	NA	NA	NA
WP_047261478.1\|30830_31019_-	hypothetical protein	NA	NA	NA	NA
WP_047261477.1\|31015_31312_-	hypothetical protein	NA	NA	NA	NA
WP_047261476.1\|31274_31742_-	hypothetical protein	NA	NA	NA	NA
WP_047261474.1\|32100_32652_+	DUF4145 domain-containing protein	Q20DE2	Lactobacillus_phage	6.4e-15	35.8
WP_144414122.1\|32581_32815_-	hypothetical protein	NA	NA	NA	NA
WP_047261473.1\|32849_34847_-	DNA polymerase	A0A1W6JQ98	Corynebacterium_phage	3.7e-214	58.2

Anti-CRISPR protein detection

Acr_ID: NZ_CP011544.1|WP_052844523.1|17951_18503_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP011544.1|WP_052844523.1|17951_18503_-|hypothetical-protein

17951_18503_-

183 aa aa

14077-34847

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP011542_3	TypeI-E	3.85\|2753763\|33\|NZ_CP011542\|CRISPRCasFinder,CRT,PILER-CR	2753763-2753795	33	22525-22493	1

1. spacer 3.85|2753763|33|NZ_CP011542|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011544 position: 22525-22493, mismatch: 1

gcttcagcccggcgatgacatcgccatgttctt	CRISPR spacer
gcttcagcccggcgacgacatcgccatgttctt	Protospacer
***************.*****************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011542

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP011543

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP011544

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information