CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP004021	Candidatus Liberibacter africanus PTSAPSY chromosome, complete genome	3 crisprs	DEDDh,cas3	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP004021_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP004021_1

63355-63449

Orphan

Consensus_repeat	Method
AATAATGAACCTGCAAATCCAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP004021_1

>merge|NZ_CP004021|1|63355-63449|CRISPRCasFinder
AATAATGAACCTGCAAATCCAGCACCAGACAAAGGTAATAATGAACCTGCAAATCCAGCACCAGAACAAGAAAACAATGAACCTGCAAATCCAGC

>NZ_CP004021|1|1|63355-63449|CRISPRCasFinder
AATAATGAACCTGCAAATCCAGC	ACCAGACAAAGGTAATAATGAACCTGCAAATCCAGCACCAGAACAAGAA
AACAATGAACCTGCAAATCCAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP004021.1\|WP_047263808.1\|50287_50488_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004021.1\|WP_047263824.1\|72640_73861_+\|NADP-dependent-isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|236226
NZ_CP004021.1\|WP_047263809.1\|50588_51470_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226121
NZ_CP004021.1\|WP_047263810.1\|51521_52445_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226121
NZ_CP004021.1\|WP_047263823.1\|70159_72472_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP004021.1\|WP_083965929.1\|75631_76060_-\|preprotein-translocase-subunit-SecG	unknown	unknown	gnl\|CDD\|235881
NZ_CP004021.1\|WP_047263813.1\|54145_56911_-\|DNA-gyrase-subunit-A	unknown	unknown	gnl\|CDD\|235502
NZ_CP004021.1\|WP_162488567.1\|68299_69106_-\|glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
NZ_CP004021.1\|WP_047263820.1\|67292_67913_-\|30S-ribosomal-protein-S4	unknown	unknown	gnl\|CDD\|235411
NZ_CP004021.1\|WP_047263819.1\|66323_67259_-\|glutaminase	unknown	unknown	gnl\|CDD\|234880
NZ_CP004021.1\|WP_047263814.1\|57005_57485_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|235782
NZ_CP004021.1\|WP_047263822.1\|69110_69917_-\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223639
NZ_CP004021.1\|WP_047263807.1\|49515_49746_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004021.1\|WP_047263817.1\|63986_64880_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004021.1\|WP_047263811.1\|53008_53350_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004021.1\|WP_047263825.1\|73867_75541_-\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
NZ_CP004021.1\|WP_158402209.1\|65860_65998_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004021.1\|WP_052774993.1\|46611_47355_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004021.1\|WP_047263806.1\|47613_48147_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP004021.1\|WP_047263815.1\|61026_62403_+\|type-I-glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|181884

Protein	Function_ID	Function_description	E-value
NZ_CP004021.1\|WP_162488567.1\|68299_69106_-\|glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	5.35792e-76
NZ_CP004021.1\|WP_083965929.1\|75631_76060_-\|preprotein-translocase-subunit-SecG	gnl\|CDD\|235881	PRK06870, secG, preprotein translocase subunit SecG; Reviewed.	2.62189e-13
NZ_CP004021.1\|WP_047263809.1\|50588_51470_+\|AAA-family-ATPase	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	1.95674e-07
NZ_CP004021.1\|WP_047263810.1\|51521_52445_+\|AAA-family-ATPase	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	1.48991e-08
NZ_CP004021.1\|WP_047263823.1\|70159_72472_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.72073e-53
NZ_CP004021.1\|WP_047263813.1\|54145_56911_-\|DNA-gyrase-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NZ_CP004021.1\|WP_047263824.1\|72640_73861_+\|NADP-dependent-isocitrate-dehydrogenase	gnl\|CDD\|236226	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase.	0
NZ_CP004021.1\|WP_047263820.1\|67292_67913_-\|30S-ribosomal-protein-S4	gnl\|CDD\|235411	PRK05327, rpsD, 30S ribosomal protein S4; Validated.	1.12991e-102
NZ_CP004021.1\|WP_047263814.1\|57005_57485_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|235782	PRK06341, PRK06341, single-stranded DNA-binding protein; Provisional.	6.59756e-72
NZ_CP004021.1\|WP_047263822.1\|69110_69917_-\|RNA-methyltransferase	gnl\|CDD\|223639	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis].	8.05039e-83
NZ_CP004021.1\|WP_047263806.1\|47613_48147_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.33442e-11
NZ_CP004021.1\|WP_047263825.1\|73867_75541_-\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP004021.1\|WP_047263819.1\|66323_67259_-\|glutaminase	gnl\|CDD\|234880	PRK00971, PRK00971, glutaminase; Provisional.	6.11249e-170
NZ_CP004021.1\|WP_047263815.1\|61026_62403_+\|type-I-glutamate--ammonia-ligase	gnl\|CDD\|181884	PRK09469, glnA, glutamate--ammonia ligase.	3.88865e-159

>NZ_CP004021.1|WP_047263815.1|61026_62403_+|type-I-glutamate--ammonia-ligase
MVDEAATIIQKIEQEKTKFIDLRFTDLQGKFLHISISTPLFNEDTLLNGIILDSSSIPGWDSQHLKLLLIPDMKTMHIDPFYAQSTIAFICNVYDPVSLKPYNRDPRYTAQKAIDYLQLVGIGDTLLLGITAEFFIFDSAHCTMSPIKSGFSLESTELSKNETNKGYIPNTKSGYTLSPEDKSHDLRSEIVSALNNIDVQITKYQNQAHDAQHSFSLQLESLLQASDNLQKYKYSVHQVANSYCKTATFMPKPLAYHNGSSMYLNMSIHKGGKEVFAGNQYEGLSETCLYYLGGIIKHAKALNAFTNPSTNSYKRLLSDHQSPIKLSYSMHNNASSCRIPLNNQLEHKNIEIRFADPSANPYLASTAILMAGLDGIAKKIHPGKNFDELSLKEQMKVPKISSSLRESLKNLNSDREFLKVGNVFDDDQIDAFINLKNNEVLRLEQTPCPIEFEMYYSI
>NZ_CP004021.1|WP_047263814.1|57005_57485_-|single-stranded-DNA-binding-protein
MVASVNKVILIGHLGADPDVRHTQDGRKIVNLRIATSESWKDRTTNERREKTEWHSVVVFVEELCKIVEQYLRKGSKVYVEGSLQTRKWQDQSGNNRYTTEIIMRTMVMLDSRKDSLQGNEHSNNNSNSNLKENVVEDRYSSSQGGSVFSDELDDDIPF
>NZ_CP004021.1|WP_047263813.1|54145_56911_-|DNA-gyrase-subunit-A
MTQNIIPSDKEEEKGITSVSISDEMQKSYLTYAINVILGRAIPDLRDGLKAVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNLAIYDALARMAQDWSLRLLLIEGQGNFGSIDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAKFPNLLVNGAGGIAVGMATNIPTHNLGEVVDGCVAFIDNPDIELDDLMKIIRGPDFPTGAIILGRTGIKNAYATGRGSIVIRGVSHIEKISGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAAADVILNQLYRYTSLQSLFSVNMVALDGCKPERFTLIGIIKAFVAFREEVVVRRTKYLLNKARDRANILVGLAVAVANLDEVVRIIRFAPNPETARKELMQRSWEASDIQDLINLIDDSSYNIRSDGTIYLSEVQTRAILELRLARLTGLGRNDIRDELNNLGIEIKECLDILASRSRILDIIKQEMILIKNELDTPRKTEIVDGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVTMRDEDFVTDIFIVNTHTPVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLKQGERITTIMPIPEDESTWNDLHVVFATKCGNIRRNNLSDFVQVNRNGKIAMKLDPEDEILSVETCTEDHDVLLTTKFGQCVRFPITDVRLFSGRNSVGVRGISLSEGDYVISMAIVLHVDADYNERVCYIKQTAAHRRLITCEEGLSSVKNDDSDLNSSSDLNSSSDLNSISEERFEELKAKEQFILTISEKGFGKRTSSYDFRIANRRGKGIRAIDVSKMNEIGALVAAFPVEDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERVSESLMVDGDSETE
>NZ_CP004021.1|WP_047263811.1|53008_53350_-|hypothetical-protein
MYSYLAIKELTRSNDLLKLFISVIVDHLVDLIDDEEKKDFIRHGEDLMFSQQQENEDALLRLTTEISKRLEGYKALNKQFQQLNSDIDEDLIDRIQRKADERYCKESKNALGE
>NZ_CP004021.1|WP_047263810.1|51521_52445_+|AAA-family-ATPase
MFTQFYKDNSNTLFLFDEPASNLHPSAQQKILENFKYLSQKKNHQIIYSTHSHHLINVHWIEKTHIVKNYSSNKNGEESEKDKIGIIATIYKQFHNSHPKKIHYYQPILDALKVKVSPLDITKNSLLVEGISDHFAYTYFIKKILKRSDNPYVIPLNGVNAMNPVISILIGLGVEFRVLLDGDKQGIDAKKKYEENFEIKNGETIKTVSELCESKVDTQLEDLFEDDIKEHPDYPKENKNKNKNKNKKQYAQFFCKIKDEEPLQKFPKTEKNMKPIMDWIAKEFPVKNEETNPSSTLNLAPLNNQHK
>NZ_CP004021.1|WP_047263809.1|50588_51470_+|AAA-family-ATPase
MIIDTITIKNYKGIRETSIYFNGGNIIPIVGLNESGKSTILKAISLFYRAIFWDYEKEEPIFEDDTIPRSDKGVFQGDIILEDIVRLTKQEIKDYFTPEEIETYFTKKKKRQKKSISDDQEVLITYTEKYVDDKYKNKSRKSYIINNNKEYPEIPYEVTRTICYLFPNIYYFPDFLFTFPEEVYLSSEDRDSSMRDSDRSTHEKFTESLEQIFMSIHSGQDFKKLFIDKMSSNDPKDENCINNIIATINNHITETFQSSWEKVTGDNNKKVNFTIKQVNKYKKIKINATEDGK
>NZ_CP004021.1|WP_047263808.1|50287_50488_+|hypothetical-protein
METPLRVLISSCCANQVIRSLSSPNRVVDRQFFKNVKDARALLRSANVTILEIEKMHKVKKRINKV
>NZ_CP004021.1|WP_047263807.1|49515_49746_+|hypothetical-protein
MVLDAGAMTLCGGRKLVISTPFPMKVSAELTTKRRFTTVLGVKGNTVVKNKAVVIEGSQIYEDDEDRDEFLVDGAR
>NZ_CP004021.1|WP_047263806.1|47613_48147_-|helix-turn-helix-transcriptional-regulator
MGNENKKSFDWQEIGQRFRSVRLGRDYTQLKMGEVANQKKSAIGQFEIGSKPASTHYALFLRNEFGVSFDWLYDGVETKIKSSDREKKRILNPTAIGERLKKFRKEEGLTLKEFGEWVGLPIPTINSYERGRSAPEIKSALKIKRALHKPLDWIYFGDEPVLPKSRRLASASQPSSV
>NZ_CP004021.1|WP_052774993.1|46611_47355_-|hypothetical-protein
MIWKAVKSSPKYGKISLLFAFFGGISYTLRWGLSCFIASDWSYLILSFLLILLVSIVIPAIEDTLRANDSAFEEEEIVNNKIKDNLLEDSLTVIEECVNCLQFPDRYYRYFHKGDVDRIYEYSVPNFIYEVLDIPEENRLVDEIYHLNNVTSSKLLNITSDSKYRPSKEEVRKAFPSMIKKIEELLTAHYEIEPLGSNIKTYCAKTFDVDKNYIFHINKLTYLLRNRDFGGMVYDRKAYNRSPRISI
>NZ_CP004021.1|WP_047263817.1|63986_64880_+|hypothetical-protein
MKNKFNKIAMLSTTSILATTSILASCSLFESENNQKVIEKIELSNKQTENNSPTPPNTNTPQNTNTPPNTNTTQNTPTNDNVKVADTNDNAEVTATNDNVKVADTNDNAKVNEPVDFLATKVNNTNYTAVTAPIDIPAAEVNNINNDRFATPDNTAKVAAPVDFLSAEVKNTIIEKEKINLFNNQTVNNSHTPPTTNTPPTTHTKENSTPTKKIDNTEPATEVNDEDKILLTKVLYPSTSKTNPNYKIKTEVLRKHDLPKGTSIISFNKVINKLIFRRSKVTKQDAGIINVVNKFID
>NZ_CP004021.1|WP_158402209.1|65860_65998_-|hypothetical-protein
MAGGLGLTGVGSAGLVSVVFGSLRDMNFNTSDFSTLVSLLAKMVP
>NZ_CP004021.1|WP_047263819.1|66323_67259_-|glutaminase
MNLRKVVNGIYEDIKYQIGQGRVADYIPELAKVNPGFFGMSIALEDGSVYSSGDSGIPFSIQSISKVFLLTIALQKIDEDIWKRVGREPSGSSFDSIVQLEHDNGIPRNPFVNAGAIVVTDAVLENSSVDHEINSFLDFVRDIAHDPSVYIDSVVANSEIETGYRNFALANFIRSYGNIKCEISDVLKFYFYQCSLMMSCLQLAKSGLYLACRGYNPLTSKNIISPLQSRCVNAVMLTCGHYDNSGDFAYRVGFPGKSGVGGGILAIVPSKASIAVWSPGLNNFGNSLLGAKALELLAVRTGWSIFDPLLI
>NZ_CP004021.1|WP_047263820.1|67292_67913_-|30S-ribosomal-protein-S4
MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRRSKPSYFGLQLRAKQKMKKYYGDISEKQFCSIFKKADRSKGDTSHNLISLLESRLDTIVYRSKFVPTIFAARQFVNHRHVLVNGVSVNIGSYCCKEGDVIEVKEKSKQLVSVLESVQLAERDVPEYIKADHEKMVATFVRIPSSLSDVPYPVVMQPNLVIEFYSR
>NZ_CP004021.1|WP_162488567.1|68299_69106_-|glutamate-racemase
MVIFVTKKINNCILIFDSGIGGLVVLQKTRLLMPDYNFIYVADDIGFPYGNWEDRALKKRLMFIFSDILDKYRPVLSIVACNTAFTLIKDELRSTFPSMTFLGAVPDIKKAVEVTQSGLVSILSTPATLRRAYTGHLIDTYASKCQINLVSSTTLASKIEGYACGENIKDDEIKREIEKCFVEKEGKKTDVIVLACTHYPLITHVFRRVSPWLVEWVDNSDSIALRARTILPKINDRHIELSEDHVFFLSEKRDMSMRSLMQEFGLKY
>NZ_CP004021.1|WP_047263822.1|69110_69917_-|RNA-methyltransferase
MTQCSPRLQNYTKGPVIVLVDPQLGENIGMVARAMWNYNLTQLRLVNPRDGWPNEKARSSSANADRVIDSVCVFSSLREAIADLHFVYATTARSRNNFKSVFSPKEAAIVLNERIASEQNVGIIFGRESRGLTNEEISLSNAIISFPVNPAFSSLNISHAVLLMVWEYMENSVLISEKIVKEHNKPATKGELLSFLDYLENSLEERGYFRPVEKREKMLDDLRSVFIRAELMQQEIFLLRGIISALDRFSRKYPRGSVMCPKKTETSE
>NZ_CP004021.1|WP_047263823.1|70159_72472_+|two-component-sensor-histidine-kinase
MENVHNISANCGLYYSITQQKIPFSLKNIFKKLHISRIFSIISSFHKTIPMVSMVFIVLIAITSTIKVITRYTQQEKMIHQTSLFLEETIETIFKNNNIKFDIAFQQKAESILEQLPIRHISPKSFVLLVQPNGVVFASSKKQSPHIGKRIEEVIPGFNHVNNMVKKTQNLEITLSQQPYHVSSIHHLHNDGLILIANSKLPLLRFWREEVTLELMFFSSISAVILLVLFNYYKQAKNTKDSNNLLFDSSTYVETALSRGRCGIWNFNFDEKKFYLSQSMHEIFGIPCENQPLSFRAIARLIHGNDTTIYDIARSIIKNRITQLDQIFHMRHSSGADIWIKVRAQVMRTISGSINIIGIAIDITEQYYLEKRFAEADKRLSKAIECTSEAFVLWDKDDRLVMCNVHYQKAYGLPDHVIFPGNSRSIIQEAQIHPIIEYHTSDPTRSQDISKEIKLADSRWLQINEWRTKDGDTIAVGTDITKLKRSQKKLRESERRLKATINDLSTSRQILERQKTELSIANTKYQVEKERAEIANKAKSEFLAKMSHELRTPLNAILGFSEIIKREIFGELGSVKYYEYAKDIHDSGQHLLNLINDILEMSKIETEQIPIEKQNTNLMPIIDGILQLISPLAQNKNIKIEKNISPELFFHADKRIIKKILIPIISNSIKFTNDGGKMIIRASQIDQRMIITIADTGIGIPKSALERIGQPFEQLNNQHDKSLGGSGLGLSISYALTHLHGGRLKIISQEGKGTIVTICMPQQNNHALIA
>NZ_CP004021.1|WP_047263824.1|72640_73861_+|NADP-dependent-isocitrate-dehydrogenase
MKKIKVTKPVVSLDGDEMTRIIWKLIQEKLINPYLDIKIEYFDLSIQNRDMTDDQVTVDAANAIKNCGVGIKCATITADRARVKEFNLKEMWKSPNGTIRNILGGIIFREPIICNNVPRLVPGWKKPIIIGRHAFGDQYRATDFQFPGKGKLILKFVGNDGQTIEKEVYNSPGSGIAMAMYNLDDSIRNFARAAMQYALSRQLPLYLSTKDTILKSYDGRFKSIFDEIFENEFKNKFDELNITYAHRLIDDMVASSIKWSGGYVWACKNYDGDVQSDIIAQGFGSLGLMTSVLVTADGKTMETEAAHGTVTRHYRQYQQGKETSTNSIASIFAWTRGLLHRAKLDDNIDLKNFAESLEHVCVKTVEDGFMTKDLALLIGPQQDWLSTTDFIEKISSNLRDKLQIES
>NZ_CP004021.1|WP_047263825.1|73867_75541_-|CTP-synthase
MVRYIFITGGVVSSLGKGVAAASLGALLQARQYKVRVRKLDPYLNADPGTMSPMQHGEVFVTDDGAEADLDLGHYERFMGVCSTKTDNITTGRIYKNVIEKERRGYYLGATVQVIPHVTNEIKEFITRGNEDVDFVICEIGGTVGDIEAMPFVEAIRQLGNDLLYHGSKALYIHLTLMPYIKSSGELKTKPIQHSVKELQALGVHPDILLIRVDRDIPEMERRKLSLFCNVPISAVIQALDVDDIYKVPLTYHRAGMDSVVLSSFGIENVQPPQIDNWKSFCDSTSLFKHEVKVAIVGKYIHLKDAYRSLIEALRHGGVSSYTKVQLSWVDAEVLEKEDPVKHLYGVHGIIIPGGFDKRGSEGKIVAIRFARENKIPFLGICFGMQMAVIEVARNLIGISNACSTEFSDAGEPVVALMREWIKGDKREKRLVSDDLGATMRLGAYDVSLKEKTLISKIYGVNVISERHRHRYEVNLNYQEKLEDCGLKFSGFSIDQNLPEVVEYTNHPWFIGVQYHPELKSRPLDPHPLFTSFIQAALSYSHNPSKELNEINDDNFL
>NZ_CP004021.1|WP_083965929.1|75631_76060_-|preprotein-translocase-subunit-SecG
MQIFLIVAHLIVVFILVSVILIQSSDSSAFGSSSSSSNFTSVRSSAHSLWRFTAIIAFFFFATSLALGITSRYFSLKNKEALNQSLIDLTKNQVVDNSSDANYHKQVVDNSSDANSHTKSSSKSKKSLSSAVPPNNSSSSKK

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Crispr_ID: NZ_CP004021_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP004021_2

1112590-1112684

Orphan

Consensus_repeat	Method
AAGCTTGAATTGGCGAAGATCAATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP004021_2

>merge|NZ_CP004021|2|1112590-1112684|CRISPRCasFinder
AAGCTTGAATTGGCGAAGATCAATGCAGAACAAATGAATTCCGATCAATCAATAGAACATGATAGGTTGAAGCTTGAATTGGCGAAGATCAATGC

>NZ_CP004021|2|2|1112590-1112684|CRISPRCasFinder
AAGCTTGAATTGGCGAAGATCAATGC	AGAACAAATGAATTCCGATCAATCAATAGAACATGATAGGTTG
AAGCTTGAATTGGCGAAGATCAATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP004021.1\|WP_047264565.1\|1117776_1118460_+\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|235376
NZ_CP004021.1\|WP_047264742.1\|1105083_1105683_+\|DUF882-domain-containing-protein	unknown	unknown	gnl\|CDD\|283577
NZ_CP004021.1\|WP_047264562.1\|1114550_1114736_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004021.1\|WP_047264567.1\|1119504_1120161_+\|ribonuclease-HII	unknown	unknown	gnl\|CDD\|260003
NZ_CP004021.1\|WP_047264569.1\|1121211_1122000_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP004021.1\|WP_047264553.1\|1106388_1106568_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004021.1\|WP_047264554.1\|1106738_1107353_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP004021.1\|WP_158402241.1\|1123478_1123631_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004021.1\|WP_148407350.1\|1108699_1108975_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004021.1\|WP_052775053.1\|1103905_1104811_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626
NZ_CP004021.1\|WP_158402237.1\|1109969_1110137_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004021.1\|WP_158402239.1\|1113054_1113225_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004021.1\|WP_047264552.1\|1103007_1103901_-\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|319803
NZ_CP004021.1\|WP_047264556.1\|1108006_1108273_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004021.1\|WP_047264563.1\|1115193_1115754_-\|SLATT-domain-containing-protein	unknown	unknown	gnl\|CDD\|375597
NZ_CP004021.1\|WP_047264570.1\|1122062_1122320_-\|DUF2312-domain-containing-protein	unknown	unknown	gnl\|CDD\|237474
NZ_CP004021.1\|WP_047264740.1\|1101943_1102837_+\|protease-modulator-HflC	unknown	unknown	gnl\|CDD\|259803
NZ_CP004021.1\|WP_047264568.1\|1120277_1120991_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004021.1\|WP_158402235.1\|1106239_1106389_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004021.1\|WP_047264573.1\|1123851_1124124_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222782

Protein	Function_ID	Function_description	E-value
NZ_CP004021.1\|WP_047264565.1\|1117776_1118460_+\|uracil-DNA-glycosylase	gnl\|CDD\|235376	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional.	4.03537e-138
NZ_CP004021.1\|WP_047264742.1\|1105083_1105683_+\|DUF882-domain-containing-protein	gnl\|CDD\|283577	pfam05951, Peptidase_M15_2, Bacterial protein of unknown function (DUF882). This family consists of a series of hypothetical bacterial proteins of unknown function.	1.34832e-50
NZ_CP004021.1\|WP_047264570.1\|1122062_1122320_-\|DUF2312-domain-containing-protein	gnl\|CDD\|237474	PRK13694, PRK13694, hypothetical protein; Provisional.	1.15441e-25
NZ_CP004021.1\|WP_047264552.1\|1103007_1103901_-\|phosphoserine-phosphatase-SerB	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	8.94585e-77
NZ_CP004021.1\|WP_047264569.1\|1121211_1122000_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	3.44285e-47
NZ_CP004021.1\|WP_047264563.1\|1115193_1115754_-\|SLATT-domain-containing-protein	gnl\|CDD\|375597	pfam18160, SLATT_5, SMODS and SLOG-associating 2TM effector domain family 5. The SLATT domain contains two transmembrane helices. SLATT domains are generally predicted to function as pore-forming effectors in a class of conflict systems which are reliant on the production of second messenger nucleotide or nucleotide derivatives. SLATT domains are predicted to initiate cell suicide responses upon their activation. This SLATT family contains an additional C-terminal alpha-helix, and strictly associates with a reverse transcriptase domain, part of a predicted retroelement with diversity-generating potential.	9.9694e-35
NZ_CP004021.1\|WP_047264554.1\|1106738_1107353_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.70466e-10
NZ_CP004021.1\|WP_047264567.1\|1119504_1120161_+\|ribonuclease-HII	gnl\|CDD\|260003	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like. This family includes mostly bacterial type 2 RNases H, with some eukaryotic members. Bacterial RNase HII has a role in primer removal based on its involvement in ribonucleotide-specific catalytic activity in the presence of RNA/DNA hybrid substrates. Several bacteria, such as Bacillus subtilis, have two different type II RNases H, RNases HII and HIII; double deletion of these leads to cellular lethality. It appears that type I and type II RNases H also have overlapping functions in cells, as over-expression of Escherichia coli RNase HII can complement an RNase HI deletion phenotype. In Leishmania mitochondria, of the four distinct RNase H genes (H1, HIIA, HIIB, HIIC), HIIC is essential for the survival of the parasite and thus can be a potential target for anti-leishmanial chemotherapy. Ribonuclease H (RNase H) is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair.	1.8656e-97
NZ_CP004021.1\|WP_047264740.1\|1101943_1102837_+\|protease-modulator-HflC	gnl\|CDD\|259803	cd03405, SPFH_HflC, High frequency of lysogenization C (HflC) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflC (High frequency of lysogenization C). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another SPFH superfamily member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	4.4649e-87
NZ_CP004021.1\|WP_052775053.1\|1103905_1104811_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	9.05031e-112
NZ_CP004021.1\|WP_047264573.1\|1123851_1124124_-\|hypothetical-protein	gnl\|CDD\|222782	PHA00330, PHA00330, putative replication initiation protein.	0.00199834

>NZ_CP004021.1|WP_158402237.1|1109969_1110137_-|hypothetical-protein
MSDYDRTKKDLEHEEAKKKWEDTEKIRFRMIYEAHQAKGPLRRRVLELEEALRRK
>NZ_CP004021.1|WP_148407350.1|1108699_1108975_-|hypothetical-protein
MELIISEVSKGRMLIDVMDDAGRPTDYGFRRALDSNPELRERLDIAIEKQHDRIAKSLITEVDTPPPEEELKHPEYYSDKRDREHRVKCGI
>NZ_CP004021.1|WP_047264556.1|1108006_1108273_+|hypothetical-protein
MSSIYVTSKKYRPSEEEVKKAAPALIERIEGILNLYAKLPLPYYIKNHKDDSYNKHIQRLLYLMNEEKFDEMIEERECYNEKLRSKIT
>NZ_CP004021.1|WP_047264554.1|1106738_1107353_+|helix-turn-helix-transcriptional-regulator
MENNDKNKLNWIGIGQRFRNLRLNKGLNQLEIIDKAKAFNGSISMFEKGIQPASTHYALFLRNEFGASFDWLYDGSEAKIKSSDREKKRSLNPIEIGKRLRKFRKDEGLTLKEFGEWTGLPISTISTYEIGRSAPEIKTALKIKRALNKPLDWLYFEDEEIIPNSRKKGRRLPTKLNLNQINRRYLQGKSKERYKCWRQLFTTF
>NZ_CP004021.1|WP_047264553.1|1106388_1106568_-|hypothetical-protein
MKVHVPIFESLQTCLDVVGKKHDTFQQLPVVNLSHLQLLSATGLEIDVKEQDYPMNIEP
>NZ_CP004021.1|WP_158402235.1|1106239_1106389_-|hypothetical-protein
MDYEKHEQQYQRMQMLVELIAIYGWSKTDMDELYNREVNAKNLLIKRLE
>NZ_CP004021.1|WP_047264742.1|1105083_1105683_+|DUF882-domain-containing-protein
MKKYSNKTKILRFLKFGLILLGYFITLLLFNIISFNHQNLRQISSITNALEQKKVKTLKIYVVYTGVKAVITFKRGDQYDQEGLSQLNRLLYDRHSKKSTNLQPELFDFLWNIHSHFNESRYIYILSGFRAEETNQMLRKRNIKVARRSQHVLGKAVDFYIPGVSVKEIYKVAVRLRQGGVGYYPHFIHIDVGAVRFWL
>NZ_CP004021.1|WP_052775053.1|1103905_1104811_+|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MFLSTNNNAIFIFGQTASGKSLCALKLARKFNGAIINADSMQVYDTLSILTSRPSYQDMQSVPHYLYGHIPAQESYSVGKWLSSAVKTITEVRNNRFLPIIIGGTGLYFRALMGQISTMPEIPNEVRQNIREKIKKYGSHVIHDELSRVDHLAAQQIHPSDAQRIARALEIKVFSGRSIIEFWKQSSNPVIPLESTCKIIIIPEKDELKNRIYRRFKKMLDSGAIDEICSLVKMNLSLDLPIMKAIGVREIIALLNGEMNYDQTLNKGVVATNQYAKRQKTWISHQFKEDWIRINSIEDLL
>NZ_CP004021.1|WP_047264552.1|1103007_1103901_-|phosphoserine-phosphatase-SerB
MALIATLITHRSHPILSSSLVKQIIQTVNASAFYWLAYSIACDIILPSEEAIDDYKKKILSIIAEKPIDLVIHKHENRRKSLLVSDMDSTMIEQECIDELADTIGIKEQIAHITSRAMNDEISFQHSLRERVSLLKGTSTKIIDSLIEKKITYNPGGYELVHTMKKHGAFTLMITCGFTIFARIIAKNLGFDRYYANQFIEKDNILTGEIVEPMLDSVKKSKILLETTQKLRINPEDTIAVGDGINDFDMLKVAGYGVAFHAKPSLAKKAKIRIDHSDLESLLYIQGYKQEEFVRSQ
>NZ_CP004021.1|WP_047264740.1|1101943_1102837_+|protease-modulator-HflC
MSNKFSVYLFLFIFLFAGISYSSFFIVDARKQAVVTRFGRINAVYKNPGIYFKMPFSFMNIDNVKYLPKQTMRLNLDNIRVQVADGKFYEVNAMMTHRIVDPALFCESVSCDRVAAESRLRTRLDASIRRVYGLRRFDDALSKQRTKMMLEVRDDLRHDSEKLGISIEDVRVLRTDLTQEVSQQTYDRMKAERLAEAEFIRARGREEGQKRMSIADRKATQILSEARRDSEINYGKGEAERGRILSNVFQKDPEFFEFYRSMKAYSNSLSSSDTFLVLSPDSDFFKYFNHFQERNMK
>NZ_CP004021.1|WP_158402239.1|1113054_1113225_-|hypothetical-protein
MIIGRDTYGPTMEQIQVIETANKEKESKENANKNKESKETDNKDKESNKDKESNKN
>NZ_CP004021.1|WP_047264562.1|1114550_1114736_-|hypothetical-protein
MVLQVTEKNNLSEITSKNLKGEKIARLYQDGHMAMTGNPANGGWMTLTDTGYVFLEWQLVR
>NZ_CP004021.1|WP_047264563.1|1115193_1115754_-|SLATT-domain-containing-protein
MIEYKTYIANKIWLTSKVRMVAESKRRTMNTILWILGFYYSIASLSVHLFRVFHGSYSSEVGAFFSMIGLFAPYISLGLGLIKSSDEYRKCYLNLQKLLDNPSPSISKKYSDILDDSPNHNSYDYIDFVVKHAWIEMKTLTDGTSKNVEATTMMIVTWGFRRFFLWFFIVLFFSPPLVYWWFCFFY
>NZ_CP004021.1|WP_047264565.1|1117776_1118460_+|uracil-DNA-glycosylase
MEEVKIHESWKVLLENHFQSDYMHNLKKFLISEKRKGKKIFPRGSHYFRAFDITPFNKVKVVIIGQDPYHGYGQAHGLCFSVPVGTRIPPSLVNVYKELKEDINFIPPAHGFLEHWGYEGVLLLNAVLTVEEGHAASHRGKGWEKFTDSVIDLINNKRKNIVFMLWGAASQKKQDILDHKRHLVLKAAHPSPLSAHHGFFGCRHFSKANQYLKEHGQTSINWQLPLL
>NZ_CP004021.1|WP_047264567.1|1119504_1120161_+|ribonuclease-HII
MDILVKENISSYLITPKKPHFEFETIIQEKNMWPVAGIDEVGRGAIAGPVVVAAIILDPNNIPDDINDSKKMSQKKREELYEKIMSSAVVSIASASSQYIDQHNIHKATLDTMCRVVKNLPVIPQSVLIDGRSIPEHLPCQAFSIIKGDSISLSIAAASIIAKVTRDRFMKMAHKKYPEYGFDSHVGYPTVKHRQVIREKGPSRIHRMTFRPLHNLSI
>NZ_CP004021.1|WP_047264568.1|1120277_1120991_-|hypothetical-protein
MNFYKCGILFAVSLMISSYSMAGDIYIPMKKKSLDEKKIVRNIVHNVEYQDDEYGIWSGYHAGLNLTHRAGTQTAYGEIRPYGTPLRDKLEPIFGYNIQMGDYVHGFDVGVGFQYDQEERSSKLAGLGLNVDATYKLGYSIDSFLFYGMGTLGGIYIPIKKSVDNKSFSVYGLNPSAGFGVAYMIPNQNISVSADYRISPRVILYGMSKEMKDTMNAALDRKSGMAHMISCGINFHF
>NZ_CP004021.1|WP_047264569.1|1121211_1122000_+|GGDEF-domain-containing-protein
MIRSLKYFFGTWLRHEKNLESFSPRTFMIYFTILFTIFIIAVIFIANVSLFYIGLTPFYGLEYILLENISLVIFSIIISLLLGYISGSILKELFVSYNKISKLSRTDCLSGLLNHSSFISNLESENGKLSIVFFDIDYFKKINDNFGHPVGDKVISFIADQLVLVFEKPMFVGRLGGEEFAAAALGNSEKEAAILANNLRQIIEKSQIDILNGSSIRITVSAGIAERRNKEPISTIVYQADQALYVAKKSGRNRIVCFSDIK
>NZ_CP004021.1|WP_047264570.1|1122062_1122320_-|DUF2312-domain-containing-protein
MIDSIQSVTHDQLRTVIERLERLEEEKKLIAENIKDIYNEAKTTGFDVKAIRKILSLRKKDEKQWMEEEQILDVYLRALGMVRDD
>NZ_CP004021.1|WP_158402241.1|1123478_1123631_-|hypothetical-protein
MFEKHKTGNPHVHMLIHQDPDQELLKKAEIQNEWNYEGFSHVRLLQEDLS
>NZ_CP004021.1|WP_047264573.1|1123851_1124124_-|hypothetical-protein
MFFLQYYQREKIFFGIIFSFKYYFFVFTPCRKCESCLKNRGLFWLHRCQTEVIRSTRTWFISLTFTAKKHTIDYATSIGEFVDDSPDTRY

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Crispr_ID: NZ_CP004021_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP004021_3

1190479-1190594

Unclear

Consensus_repeat	Method
TTTTTGCTGTTCATATTTAGCTTCTTTCTTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP004021_3

>merge|NZ_CP004021|3|1190479-1190594|CRISPRCasFinder
ATTTTTCTGTTCATCGTTAGCTTTTTGCTGTTCATATTTAGCTTCTTTCTTTGAATTTTCAGCTTCTTGCTTTACAGATTTTAATTTTTGCTGTTCATGTTTAGCTTCTTTCTTTG

>NZ_CP004021|3|3|1190479-1190594|CRISPRCasFinder
ATTTTTCTGTTCATCGTTAGCTTTTTGCTGTT	CATATTTAGCTTCTTTCTTTGAATTTTCAGCTTCTTGCTTTACAGATTTTAA
TTTTTGCTGTTCATGTTTAGCTTCTTTCTTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP004021.1\|WP_158402245.1\|1191869_1192019_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004021.1\|WP_047264624.1\|1187123_1187495_-\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|234744
NZ_CP004021.1\|WP_047264623.1\|1186543_1186942_-\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|234610
NZ_CP004021.1\|WP_158402243.1\|1191200_1191362_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP004021.1\|WP_047264747.1\|1182641_1183970_-\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	unknown	unknown	gnl\|CDD\|184642
NZ_CP004021.1\|WP_047264622.1\|1185714_1186467_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|182787
NZ_CP004021.1\|WP_047264618.1\|1179979_1180672_-\|DUF502-domain-containing-protein	unknown	unknown	gnl\|CDD\|225480
NZ_CP004021.1\|WP_047264619.1\|1180727_1182554_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_CP004021.1\|WP_102030497.1\|1188634_1189402_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	unknown	unknown	gnl\|CDD\|223868
NZ_CP004021.1\|WP_047264620.1\|1184098_1185019_-\|GTPase-Era	unknown	unknown	gnl\|CDD\|234624
NZ_CP004021.1\|WP_047264621.1\|1185031_1185715_-\|ribonuclease-III	unknown	unknown	gnl\|CDD\|171444
NZ_CP004021.1\|WP_047264625.1\|1187773_1188343_+\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350235

Protein	Function_ID	Function_description	E-value
NZ_CP004021.1\|WP_047264620.1\|1184098_1185019_-\|GTPase-Era	gnl\|CDD\|234624	PRK00089, era, GTPase Era; Reviewed.	1.41456e-129
NZ_CP004021.1\|WP_102030497.1\|1188634_1189402_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	5.73738e-55
NZ_CP004021.1\|WP_047264618.1\|1179979_1180672_-\|DUF502-domain-containing-protein	gnl\|CDD\|225480	COG2928, COG2928, Uncharacterized conserved protein [Function unknown].	3.54839e-74
NZ_CP004021.1\|WP_047264624.1\|1187123_1187495_-\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|234744	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed.	1.63862e-24
NZ_CP004021.1\|WP_047264747.1\|1182641_1183970_-\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	gnl\|CDD\|184642	PRK14353, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU.	0
NZ_CP004021.1\|WP_047264619.1\|1180727_1182554_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_CP004021.1\|WP_047264623.1\|1186543_1186942_-\|holo-ACP-synthase	gnl\|CDD\|234610	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional.	4.25104e-54
NZ_CP004021.1\|WP_047264622.1\|1185714_1186467_-\|signal-peptidase-I	gnl\|CDD\|182787	PRK10861, PRK10861, signal peptidase I.	1.97499e-48
NZ_CP004021.1\|WP_047264625.1\|1187773_1188343_+\|NYN-domain-containing-protein	gnl\|CDD\|350235	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins. This subfamily contains Synechococcus elongatus PCC 7942 LabA which participates in cyanobacterial circadian timing, it is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system, and appears to be necessary for KaiC-dependent repression of gene expression. This subfamily belongs to the LabA-like domain family which includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Also included in the LabA-like domain family are human ZNF451, uncharacterized Bacillus subtilis YqxD, uncharacterized Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously Pseudomonas putida S16 NicB , which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	7.28541e-56
NZ_CP004021.1\|WP_047264621.1\|1185031_1185715_-\|ribonuclease-III	gnl\|CDD\|171444	PRK12371, PRK12371, ribonuclease III; Reviewed.	3.52139e-126

>NZ_CP004021.1|WP_102030497.1|1188634_1189402_-|septal-ring-lytic-transglycosylase-RlpA-family-protein
MSSCFSSSYKGDNLEYFPESTYGVSASNRIVFGKKVPRGGGYYYLGKPYLIRGRSYIPRQYISYAAVGMASWYGKAFHGRLTANGEIYGTEYITAAHPTLPLPSYVRVTNLDNGISLVVRVNDRGPYHNNRLIDLSNAAAKILHIEERGVSKVHVEYLGIAPLNGMDQDYLKSTVEVRTKAMVLPLGCKYREEIVKIPYFLTRSRIVNLSNCDDDSLRKQRDITLKNERKSNLIPVPGSYYSSKKPSTVPIPSRL
>NZ_CP004021.1|WP_047264625.1|1187773_1188343_+|NYN-domain-containing-protein
MFDPREKIALFIDGANLYAASKALGFDIDYRKLLKAFRSRARVLRAYYYTTVIEDSEQQFSPLHPLLDWLHYNGFQVVSKTAREFVEVSGRKRIKASMDVDLAVDAFEQSEGVEHSVIFSGDGDFTPLVAALQRKAKKVTIISTVLSNPSMVSDQLRRQADYFIDLAYLKNEIARDAPESTQEEKECTK
>NZ_CP004021.1|WP_047264624.1|1187123_1187495_-|DNA-directed-RNA-polymerase-subunit-omega
MARTTVEDCVDKVENRFELVLLASHRARHLSQGAKPTVVVENDKDTVLALREIASGTLSADDLEEDFIHSLQKHVEVDEPDNAVDNSEFTWNKPESLSFEQMSEGELIEGIGNIVAPDKRDDC
>NZ_CP004021.1|WP_047264623.1|1186543_1186942_-|holo-ACP-synthase
MIVGIGSDIVNIRRIERLLQKFDRKFELRCFSSSEQNICDLSFNRSAAYAKRFASKEAFSKAIGTGISHGISWKDIEVGNLPGGKPYISVSGRASCVLYSLVPKGHHPVIHLTISDDFPFAQAFVVIESRLV
>NZ_CP004021.1|WP_047264622.1|1185714_1186467_-|signal-peptidase-I
MWIKKILKYNFNVNKSDTFKSILQALFFAILIRTFLFQPSVIPSGSMIPTLLVGDYIIVNKFSYGYSKYSFPFSYDFFSGRIFGSQPRRGDVVVFRLPKDPTVDYVKRVIGLPGDKISLKQGAIYINDIPVARHAVGYLSYHYKEDWSNNIPIFQEKLDSGITYNVLSENILSSSNNISDFFVPKGHYFMMGDNRDKSKDSRWFDVGFIPEENLIGRASIVLFSIGDDTPFAKVWLWISNMRWNRFFKIL
>NZ_CP004021.1|WP_047264621.1|1185031_1185715_-|ribonuclease-III
MSALQYSAIEEKIGYTFSDKSLLEKAFTHSSISRSPQESYERLEFLGDRVLGLLISRLLFNHFDSAKEGELSVRFNALVSAETCSQVAKELSISSFILVSSDLRRDVCNFITSIQADVVESLIAALYLDGGMEVANDFVEKYWKHRALKEGKIRRDAKTELQEWAHAKFGVTPIYTVTFRSGPDHHPCFTVMVEVSGISPAKGVDFSKRAAEQVAAVEILKREGIWV
>NZ_CP004021.1|WP_047264620.1|1184098_1185019_-|GTPase-Era
MEMSEIIFSNEQENIVPDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFKANNSYNKLMIRSSWSTIKHADIVCLVVDSHRGLQSDVHDLFQEIGKRSDRLILILNKIDCVKPERLLEQSAIANKLVTIEKTFMVSATKGHGCDDILNYLCSTLPLAPWIYSSDQISDLPMFHFTAEITREKLFLYLHKEIPYSSCVATEKWEERKDGSVLIRQVIYVERSNQKKIVIGKNGQNIKMISLEAKKEIEEILEQTVHLILFVKVQKDWGSDPKYCS
>NZ_CP004021.1|WP_047264747.1|1182641_1183970_-|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU
MKRKCLAIVLAAGSGVRMKSSSSKVLQKIAGKPMISYVMDTIVAAGIRDVALVLGYGAEEIKKIIFPSELSVEYYMQSFQQGTAHAVLTAQDAIKRGYDDVIILYGDVPLISSHTLKEAVDKIAEGYSIAVIGFHADNPQGYGRLLIKNNEIISIREEKDATDEEKKTNYCNSGLIAIDGLHIMDWLLKIKKSEISQEYYLTDIVEKARLDGKSIVSIDAPEQEVRGCNNRYELSVIEHIWQLRCRRQMMMSGVTMIAPETVFFSHDTFIEPDTVIEPHVFFGCGVRIENSVRIRAFSYLEGVHIGKNSAIGPFSRLREGSKIEKNVRIGNFCEVKNTTIGGGSKINHLSYVGDSMMGDNVNIGAGTVTCNYDGIHKSKTNIGDNAFIGSNSSLIAPITIGQGTYIASGSVITKDTPENSLVFARSRQIVKENKSLLVRKKK
>NZ_CP004021.1|WP_047264619.1|1180727_1182554_-|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGIVGKESVGTRLLEALKRLEYRGYDSSGMATIHDGKIQCLRAQGKLSELEKEFAKDPLKGNIGIAHTRWATHGLPNKNNSHPHCIDGIAVTHNGIIENFSLLKKEYFSADKVFLTDTDTEVIACLIAKFIEDGLNKKKTIQKLMQCLTGSYSIAVIFEDDPNSIIVARKGPPLIIGHGEGEMFVGSDVAAFALLTDKVTYMEDGDWAIVRHSGLTIYDSHGHEVDRQSKVIQIAPLLIGKGDFRHFMEKEIYEQPESISRVISHYLNLSDNTIISNIFKYDFANISGLLISSCGTSYLAGLIGKFCFERLAGLKVEIDVSSEFRYRDFVYSSTWASLFISQSGETADTLASLRYMRSKGLQIGSLVNVTESSISRESDFIFPIKAGIEIGVASTKAFTCQLVVLLIMAIYAGRVRGHINIEQEGELVKSLVEIPRKMFDILQNIYSQIEKLCYALVKSNILLYIGRGPSYPLALEGALKIKEVSYLHAEGYAAGELKHGPIALITEDTLVIAIAPYDRFFQKTVSNIQEVVTRGGRIIFITDEEGAKRQSFPSVETIVLPYTSEIISPIIFSLPIQMIAYCTAILIGTDVDQPRNLAKSVTVE
>NZ_CP004021.1|WP_047264618.1|1179979_1180672_-|DUF502-domain-containing-protein
MKTKHFHLSVARRLRNNFFSGLVICAPIAITIVLTWSLVNWFDSFIMPYIPIQYNPKYYFDIAIPGYGLLIVVIFITTIGFLGRNLLGRFVFFLSEFILNNTPIVQHIYKSIKQIIRTILKEDSTSFKNACLVEYPSAGLWSLCFLTTDVKGELKEKFSDLGYEDMVTVFIPPTPLPTAGMLIFVPREKVIKLKMSAEDSAKMLISGGLVIPDDIISDEKDEEDSKKDNI
>NZ_CP004021.1|WP_158402243.1|1191200_1191362_+|hypothetical-protein
MQKEIAKAMITISEALKGNVYTARQFRQYFDNQAGMGSEASIQKRIEFLMSKG
>NZ_CP004021.1|WP_158402245.1|1191869_1192019_+|hypothetical-protein
MAAYLSILSGMPKEKFSPPVKKKKPLTTLKWLIGEYWESPYWTSLLRRL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

455816 : 488428

Liberibacter_phage(65.22%)

integrase,head,tail,terminase

attL 448468:448483|attR 488478:488493

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
448468:448483	attL	NA	NA	NA	NA
WP_047264102.1\|455816_456266_-	hypothetical protein	A0A1L2JXX6	Liberibacter_phage	8.3e-13	37.6
WP_047264104.1\|459186_460935_-	hypothetical protein	A0A1L2JXX0	Liberibacter_phage	6.1e-112	38.0
WP_047264105.1\|460927_461455_-	hypothetical protein	A0A1L2JYY9	Liberibacter_phage	9.0e-59	62.9
WP_047264106.1\|461454_462495_-	hypothetical protein	NA	NA	NA	NA
WP_047264107.1\|462518_463238_-	hypothetical protein	A0A1L2JXY9	Liberibacter_phage	1.7e-36	41.5
WP_047264108.1\|463251_463578_-	hypothetical protein	A0A1L2JXY6	Liberibacter_phage	4.7e-34	66.7
WP_047264109.1\|463570_465241_-\|head,tail	head-tail joining protein	A0A1L2JXZ4	Liberibacter_phage	6.9e-222	73.3
WP_047264110.1\|465240_465564_-	hypothetical protein	NA	NA	NA	NA
WP_102030493.1\|465556_467035_-\|terminase	terminase	E7DUG6	Liberibacter_phage	3.6e-206	68.2
WP_047264113.1\|468311_468797_-	hypothetical protein	K4ICN3	Acidithiobacillus_phage	5.2e-37	51.2
WP_148407351.1\|469564_469795_+	DUF4065 domain-containing protein	I6R0L8	Salmonella_phage	1.5e-10	45.7
WP_052775013.1\|470588_471101_+	DUF4065 domain-containing protein	NA	NA	NA	NA
WP_047264115.1\|471093_471570_+	hypothetical protein	NA	NA	NA	NA
WP_047264116.1\|471721_472363_-	hypothetical protein	NA	NA	NA	NA
WP_047264117.1\|472438_473059_-	helix-turn-helix domain-containing protein	A0A1L2K1H9	Liberibacter_phage	3.0e-37	47.5
WP_047264118.1\|473364_473730_+	hypothetical protein	A0A1L2K1R7	Liberibacter_phage	2.2e-40	64.1
WP_047264681.1\|473868_474081_+	hypothetical protein	A0A1L2K5T2	Liberibacter_phage	5.6e-12	54.5
WP_047264120.1\|474950_475199_+	hypothetical protein	NA	NA	NA	NA
WP_083965945.1\|475452_476934_+	hypothetical protein	A0A1L2JXX1	Liberibacter_phage	7.7e-15	51.2
WP_047264121.1\|476930_477254_-	hypothetical protein	A0A220A2V8	Liberibacter_phage	6.8e-09	71.0
WP_047264122.1\|477514_478309_-	hypothetical protein	NA	NA	NA	NA
WP_047264123.1\|478301_478520_-	hypothetical protein	NA	NA	NA	NA
WP_047264124.1\|478516_478783_-	hypothetical protein	E7DUM0	Liberibacter_phage	4.9e-21	69.6
WP_047264125.1\|479286_479748_+	DUF2800 domain-containing protein	NA	NA	NA	NA
WP_047264126.1\|479758_480589_+	ATP-binding protein	K4HZX9	Acidithiobacillus_phage	1.5e-71	50.5
WP_047264127.1\|480604_481216_+	hypothetical protein	A0A1B2LRU0	Wolbachia_phage	2.6e-17	37.7
WP_047264128.1\|481219_482818_+	DEAD/DEAH box helicase	A0A1B1IW48	uncultured_Mediterranean_phage	2.0e-40	30.7
WP_047264129.1\|482814_483534_+	hypothetical protein	K4HZA0	Acidithiobacillus_phage	1.6e-53	42.7
WP_052775015.1\|483520_485617_+	AAA family ATPase	A0A1B2LRQ1	Wolbachia_phage	2.6e-93	33.8
WP_047264130.1\|485633_485864_+	hypothetical protein	NA	NA	NA	NA
WP_047264131.1\|485949_486318_+	hypothetical protein	NA	NA	NA	NA
WP_047264132.1\|486358_486679_+	hypothetical protein	A0A1L2K1J5	Liberibacter_phage	2.7e-18	47.4
WP_047264133.1\|486681_487233_+	guanylate kinase	A0A1L2K1J4	Liberibacter_phage	2.1e-66	71.3
WP_083965946.1\|487528_488428_+\|integrase	tyrosine-type recombinase/integrase	A0A291AUF0	Sinorhizobium_phage	2.0e-42	38.0
488478:488493	attR	NA	NA	NA	NA

DBSCAN-SWA_2

864147 : 872700

Staphylococcus_phage(25.0%)

integrase

attL 865099:865158|attR 869871:873801

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047264396.1\|864147_865098_-	tyrosine recombinase XerC	A0A1I9SC88	Mycobacterium_phage	7.1e-14	32.1
865099:865158	attL	NA	NA	NA	NA
WP_102030485.1\|865121_865559_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	9.2e-09	40.9
WP_047264397.1\|866177_866696_+	hypothetical protein	E7DUN3	Liberibacter_phage	5.9e-47	53.5
WP_047264398.1\|867346_867928_+	GTP cyclohydrolase I FolE	A0A0P0HSD2	Acinetobacter_phage	1.1e-38	44.4
WP_047264399.1\|868347_868950_+	PilZ domain-containing protein	NA	NA	NA	NA
WP_047264722.1\|869030_869870_-\|integrase	tyrosine-type recombinase/integrase	Q83VS6	Escherichia_phage	9.7e-07	28.6
WP_102030485.1\|869893_870331_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	9.2e-09	40.9
WP_047264397.1\|870949_871468_+	hypothetical protein	E7DUN3	Liberibacter_phage	5.9e-47	53.5
WP_047264398.1\|872118_872700_+	GTP cyclohydrolase I FolE	A0A0P0HSD2	Acinetobacter_phage	1.1e-38	44.4
869871:873801	attR	NA	NA	NA	NA

DBSCAN-SWA_3

951110 : 959742

Acidithiobacillus_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047264447.1\|951110_953951_+\|tRNA	valine--tRNA ligase	A0A1V0S951	Catovirus	5.6e-139	36.3
WP_052775031.1\|954588_954927_-	hypothetical protein	NA	NA	NA	NA
WP_158402227.1\|955493_955682_-	hypothetical protein	Q9JMN6	Wolbachia_phage	5.0e-12	60.7
WP_047264449.1\|955675_956209_-	hypothetical protein	A0A1B2LRQ1	Wolbachia_phage	2.8e-23	43.3
WP_052775032.1\|956195_956525_-	hypothetical protein	K4HZA0	Acidithiobacillus_phage	1.2e-24	51.0
WP_052775033.1\|956702_956912_-	hypothetical protein	NA	NA	NA	NA
WP_162488566.1\|958519_958726_+	hypothetical protein	NA	NA	NA	NA
WP_083965959.1\|959084_959450_-	AAA family ATPase	K4HZX9	Acidithiobacillus_phage	3.5e-17	44.6
WP_052775038.1\|959481_959742_-	AAA family ATPase	K4HZX9	Acidithiobacillus_phage	1.2e-19	51.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP004021

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection