CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011573	Klebsiella aerogenes strain CAV1320 plasmid pKPC_CAV1320, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP011574	Klebsiella aerogenes strain CAV1320 chromosome, complete genome	3 crisprs	DinG,cas3,DEDDh,WYL,csa3	0	3	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011574_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011574_1

1222700-1222808

Orphan

Consensus_repeat	Method
ACTGCTATCTCCTCGCTCGCGCTTCGCTTAGCGAGGCTACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011574_1

>merge|NZ_CP011574|1|1222700-1222808|CRISPRCasFinder
ACTGCTATCTCCTCGCTCGCGCTTCGCTTAGCGAGGCTACACATTCTTGCACACTCTCAACCATCTGCACTGCTATCTCCTCGCTCGCGCTTCGCTTAGCGAGGCTACA

>NZ_CP011574|1|1|1222700-1222808|CRISPRCasFinder
ACTGCTATCTCCTCGCTCGCGCTTCGCTTAGCGAGGCTACA	CATTCTTGCACACTCTCAACCATCTGC
ACTGCTATCTCCTCGCTCGCGCTTCGCTTAGCGAGGCTACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011574.1\|WP_045361326.1\|1227221_1230965_-\|nitrate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|227346
NZ_CP011574.1\|WP_015705105.1\|1212669_1215348_+\|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|237515
NZ_CP011574.1\|WP_042893958.1\|1220446_1220905_+\|YchJ-family-protein	unknown	unknown	gnl\|CDD\|234966
NZ_CP011574.1\|WP_047739872.1\|1223412_1224309_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP011574.1\|WP_015705095.1\|1231351_1232740_-\|NarK-family-nitrate/nitrite-MFS-transporter	unknown	unknown	gnl\|CDD\|184994
NZ_CP011574.1\|WP_004103116.1\|1216700_1217108_+\|DNA-binding-transcriptional-regulator-H-NS	unknown	unknown	gnl\|CDD\|182858
NZ_CP011574.1\|WP_015367083.1\|1224305_1224983_-\|respiratory-nitrate-reductase-subunit-gamma	unknown	unknown	gnl\|CDD\|273030
NZ_CP011574.1\|WP_015705098.1\|1224982_1225693_-\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	unknown	unknown	gnl\|CDD\|185014
NZ_CP011574.1\|WP_047041473.1\|1222861_1223305_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP011574.1\|WP_015367071.1\|1211543_1212191_-\|YchE-family-NAAT-transporter	unknown	unknown	gnl\|CDD\|236850
NZ_CP011574.1\|WP_047739873.1\|1233051_1234830_+\|nitrate/nitrite-two-component-system-sensor-histidine-kinase-NarX	unknown	unknown	gnl\|CDD\|182581
NZ_CP011574.1\|WP_015367091.1\|1235487_1236864_-\|YchO/YchP-family-invasin	unknown	unknown	gnl\|CDD\|236661
NZ_CP011574.1\|WP_015367070.1\|1209161_1210793_-\|oligopeptide-ABC-transporter-substrate-binding-protein-OppA	unknown	unknown	gnl\|CDD\|185059
NZ_CP011574.1\|WP_015705104.1\|1215530_1216151_-\|thymidine-kinase	unknown	unknown	gnl\|CDD\|235272
NZ_CP011574.1\|WP_045375156.1\|1234840_1235491_+\|two-component-system-response-regulator-NarL	unknown	unknown	gnl\|CDD\|182619
NZ_CP011574.1\|WP_047739871.1\|1217233_1218136_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|184021
NZ_CP011574.1\|WP_020079113.1\|1218333_1219347_-\|two-component-system-response-regulator-RssB	unknown	unknown	gnl\|CDD\|182652
NZ_CP011574.1\|WP_015367078.1\|1219436_1220336_-\|patatin-like-phospholipase-RssA	unknown	unknown	gnl\|CDD\|182352
NZ_CP011574.1\|WP_015705097.1\|1225689_1227225_-\|nitrate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|224063
NZ_CP011574.1\|WP_015705100.1\|1220949_1221792_+\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676

Protein	Function_ID	Function_description	E-value
NZ_CP011574.1\|WP_045361326.1\|1227221_1230965_-\|nitrate-reductase-subunit-alpha	gnl\|CDD\|227346	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion].	0
NZ_CP011574.1\|WP_015705105.1\|1212669_1215348_+\|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase	gnl\|CDD\|237515	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional.	0
NZ_CP011574.1\|WP_042893958.1\|1220446_1220905_+\|YchJ-family-protein	gnl\|CDD\|234966	PRK01617, PRK01617, hypothetical protein; Provisional.	1.61218e-105
NZ_CP011574.1\|WP_047739872.1\|1223412_1224309_+\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	5.35598e-15
NZ_CP011574.1\|WP_015705095.1\|1231351_1232740_-\|NarK-family-nitrate/nitrite-MFS-transporter	gnl\|CDD\|184994	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional.	0
NZ_CP011574.1\|WP_004103116.1\|1216700_1217108_+\|DNA-binding-transcriptional-regulator-H-NS	gnl\|CDD\|182858	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS.	4.61486e-79
NZ_CP011574.1\|WP_015367083.1\|1224305_1224983_-\|respiratory-nitrate-reductase-subunit-gamma	gnl\|CDD\|273030	TIGR00351, Respiratory_nitrate_reductase_2_gamma_chain., respiratory nitrate reductase, gamma subunit. Involved in anerobic respiration the gene product catalyzes the reaction (reduced acceptor + NO3- = Acceptor + nitrite). Another possible role_id for this gene product is in nitrogen fixation (Role_id:160). [Energy metabolism, Anaerobic].	1.25701e-130
NZ_CP011574.1\|WP_015705098.1\|1224982_1225693_-\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	gnl\|CDD\|185014	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone.	2.06548e-83
NZ_CP011574.1\|WP_047041473.1\|1222861_1223305_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	3.93387e-31
NZ_CP011574.1\|WP_015367071.1\|1211543_1212191_-\|YchE-family-NAAT-transporter	gnl\|CDD\|236850	PRK11111, PRK11111, YchE family NAAT transporter.	1.54416e-133
NZ_CP011574.1\|WP_047739873.1\|1233051_1234830_+\|nitrate/nitrite-two-component-system-sensor-histidine-kinase-NarX	gnl\|CDD\|182581	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX.	0
NZ_CP011574.1\|WP_015367091.1\|1235487_1236864_-\|YchO/YchP-family-invasin	gnl\|CDD\|236661	PRK10177, PRK10177, YchO/YchP family invasin.	0
NZ_CP011574.1\|WP_015367070.1\|1209161_1210793_-\|oligopeptide-ABC-transporter-substrate-binding-protein-OppA	gnl\|CDD\|185059	PRK15104, PRK15104, oligopeptide ABC transporter substrate-binding protein OppA; Provisional.	0
NZ_CP011574.1\|WP_015705104.1\|1215530_1216151_-\|thymidine-kinase	gnl\|CDD\|235272	PRK04296, PRK04296, thymidine kinase; Provisional.	2.59522e-118
NZ_CP011574.1\|WP_045375156.1\|1234840_1235491_+\|two-component-system-response-regulator-NarL	gnl\|CDD\|182619	PRK10651, PRK10651, transcriptional regulator NarL; Provisional.	4.09827e-141
NZ_CP011574.1\|WP_047739871.1\|1217233_1218136_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|184021	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU.	0
NZ_CP011574.1\|WP_020079113.1\|1218333_1219347_-\|two-component-system-response-regulator-RssB	gnl\|CDD\|182652	PRK10693, PRK10693, two-component system response regulator RssB.	0
NZ_CP011574.1\|WP_015367078.1\|1219436_1220336_-\|patatin-like-phospholipase-RssA	gnl\|CDD\|182352	PRK10279, PRK10279, patatin-like phospholipase RssA.	0
NZ_CP011574.1\|WP_015705097.1\|1225689_1227225_-\|nitrate-reductase-subunit-beta	gnl\|CDD\|224063	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion].	0
NZ_CP011574.1\|WP_015705100.1\|1220949_1221792_+\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	1.89921e-175

>NZ_CP011574.1|WP_015705100.1|1220949_1221792_+|formyltetrahydrofolate-deformylase
MHSLQRKVLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTELEGIFNDATLLADLDSALPEGSIRELNPAGRRRVVILVTKEAHCLGDLLMKANYGGLDVDIAAVIGNHETLRTLVERFDIPFELVSHEGLSREEHDQRMGDAIAAHDPDYVVLAKYMRVLTPEFVARFPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAHYVNDNLDEGPIIMQDVIHVDHTYTAEDMMRAGRDVEKNVLSRALYQVLAQRVFVYGNRTIIL
>NZ_CP011574.1|WP_042893958.1|1220446_1220905_+|YchJ-family-protein
MSHLCPCGSALEYSSCCQRYLTGGQLAPSPSQLMRSRYSAFVMKDVDYLIKTWHPHCEAPRFRADIEKGFANTQWLGLTVFATDNGRSPDEGFVSFIARFTEDNRPGAIIERSRFLKENGQWYYIDGTRPLIGRNDPCPCGSGKKFKKCCGQ
>NZ_CP011574.1|WP_015367078.1|1219436_1220336_-|patatin-like-phospholipase-RssA
MRKLKIGLALGAGAARGWSHIGVIKALHRAGVDVDVVAGCSIGALVGAAYACNRLPALEKWVSSFSNWDVLRLMDLSWRRGGLLRGERVFNQYRQIMPVAQIEACERRFAAVATNLSTGRELWFTEGDLHMAVRASCSMPGLMSPVMHNGYWLVDGAVVNPVPVSLTRALGADIVIAVDLQHDAHLMQQDLLSIESPRPEPIEELSWHSRLRSRLGRMSSRRATITPTAMEIMSTSIQVLENRLKRNRMAGDPPDILLQPFCPQISTLDFHRAGEAMAAGQLAVEKKMDELLPLVRTSA
>NZ_CP011574.1|WP_020079113.1|1218333_1219347_-|two-component-system-response-regulator-RssB
MTQPLAGKQILIVEDEPVFRSLLDSWLTSLGATTRQAEDGIEALQQIAISKPDLMICDISMPRMNGLELVEQVRNQGEQLPILMISATENMADIAKALRLGVQDVLLKPVKDFNRLRETVYACLYPTMFSSRVEEEERLFEDWDALVSDPLAASRLLQELQPPVQQEISHCRINYRQLISADKPGLVLDIAPLSENDLAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLAHQGQRLPEMGALLKQVNQLLRQANLPGQFPLLVGYYHSGLKNLILVSAGLNGTLNTGEHKIQISNGVPLGTLGNAYLNQISQRCTSWQCQIWGAGGRLRLMLSAD
>NZ_CP011574.1|WP_047739871.1|1217233_1218136_-|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MAALNSKVRKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLEEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLTRDNLAEMIARFDETGASQIMVEPVEDVTAYGVVDCKGESLQPGESVPMVGVVEKPKADVAPSNLAVVGRYVLSADIWPLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGVRHKTLGEDFKAWLVQAVAK
>NZ_CP011574.1|WP_004103116.1|1216700_1217108_+|DNA-binding-transcriptional-regulator-H-NS
MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEIEERTRKLQQYREMLIADGIDPNELLSTMAAVKAGTKTKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKTLDDFLL
>NZ_CP011574.1|WP_015705104.1|1215530_1216151_-|thymidine-kinase
MAQLYFYYSAMNAGKSTALLQSSYNYQERGMRTVVYTAEIDDRFGSGKVSSRIGLSSPARLYNPQTSLYADIASEHARQPIHCVLVDESQFLTREQVHELSEVVDELDIPVLCYGLRTDFRGELFSGSQYLLAWSDKLVELKTICFCGRKASMVLRLDQEGRPYNEGEQVVIGGNERYVSVCRKHYKEALSTGSLTQVQSKLRHGE
>NZ_CP011574.1|WP_015705105.1|1212669_1215348_+|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase
MAVTNVAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAADARIPLAKMAVAESGMGIIEDKVIKNHFASEYIYNAYKDEKTCGVLSEDDTFGTITIAEPIGIICGIVPTTNPTSTAIFKSLISLKTRNAIIFSPHPRAKDATNKAADIVLQAAIAAGAPKDLIGWIDQPSVELSNALMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTPVVIDETADIKRAVASVLMSKTFDNGVICASEQSVVVVDSVYDAVRERFASHGGYLLQGKELKAVQDIILKNGALNAAIVGQPAAKIAELAGFTVPATTKILIGEVTDVDESEPFAHEKLSPTLAMYRAKDFEDAVNKAEKLVAMGGIGHTSCLYTDQDNQPARVAYFGQMMKTARILINTPASQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAENMLWHKLPKSIYFRRGSLPIALDEVITDGHKRALIVTDRFLFNNGYADQITSVLKAAGVETEVFFEVEADPTLTIVRKGADLANSFKPDVIIALGGGSPMDAAKIMWVMYEHPETHFEELALRFMDIRKRIYKFPKMGVKAKMVAITTTSGTGSEVTPFAVVTDDATGQKYPLADYALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHALEAYVSVLASEFSDGQALQALKLLKEYLPASYHEGSKNPVARERVHSAATIAGIAFANAFLGVCHSMAHKLGSQFHIPHGLANALLISNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIADHLGLSAPGDRTAAKIEKLLAWLESLKAELGIPKSIREAGVQEADFLAHVDKLSEDAFDDQCTGANPRYPLIAELKQILLDTYYGRDFVEGEAAAVKKEAAPAKAEKKAKKSA
>NZ_CP011574.1|WP_015367071.1|1211543_1212191_-|YchE-family-NAAT-transporter
MTLPLFDFAIYFKFFIGLFALVNPVGIIPVFISMTSYQTALVRNKTNLTANLSVGIILLTSLFLGDGILQIFGISIDSFRIAGGILVVTIAMSMISGKLGEDKQNKQEKSETAIRESIGVVPLALPLMAGPGAISSTIVWGTRYHSIAHLIGFSIAIALFAACCWGIFRMAPWLVRLLGQTGINVITRIMGLLLMALGIEFIVTGIKALFPGLTA
>NZ_CP011574.1|WP_015367070.1|1209161_1210793_-|oligopeptide-ABC-transporter-substrate-binding-protein-OppA
MTIITKKSLVAAGILSALITANVAMAADVPAGVQLADKQTLVRNNGAEVQSLDPHKIEGVPESNVNRDLFEGLVIGDLNGHPVPGVAESWDNKDFKVWTFHIRKDAKWSDGSPVTAQDFVYSWQRLADPKTASPYASYLQYGHVANVDEIIAGKKPATDLGVKAIDDKTFEVTLSEPVPYFYKLLVHPSVSPVPKAAIEKYGEKWTQPANIVTNGAYKLKDWVVNERIVLERNTNYWDNAKTVINQVTYLPISSEVTDVNRYRSGEIDMTYNNMPIELFQKLKKEIPKEVHVDPYLCTYYYEINNQKAPFTDVRVRTALKLALDRDIIVNKVKNQGDLPAYSYTPPYTDGMKLVEPEWFKWSQEKRNEEAKKLLAEAGYTADKPLTFNLLYNTSDLHKKLAIAVASIWKKNLGANVKLENQEWKTFLDSRHQGTFDVARAGWCADYNEPTSFLNTMLSDSSNNTAHYKSPAFDKIIGDTLQVTDEAKRAELYAQSEQQLDKDSAIVPVYYYVNARLVKPWVGGYTGKDPLDNIYVKNLYIIKH
>NZ_CP011574.1|WP_047041473.1|1222861_1223305_-|Lrp/AsnC-family-transcriptional-regulator
MEYIIDEIDRAILTCLTEDARVSLKVLSAQVGLTSPSTAERVKRLEEKGVIEGYGARVNLAALGYSLQALVRVRPLPGLLQKVDKYIQAMPECIESDKVTGEDCFVMRLVVRDIAQLDTILDALAEYAQCNTSVVKSSPVKRRLPPL
>NZ_CP011574.1|WP_047739872.1|1223412_1224309_+|DMT-family-transporter
MQLSRGVWQMSLAMIISGSIGAFVLLSGLPVIDVVFWRCLIGAVTLLLFILLSRQPFSRLTCLTLALAVLGGVALVINWLLLFAAYSRVSIGMATVVYNTQPFMLVLLSMILGEKVSAVKWGWLLLAFGGVVILLSSELTPAHGDNLVTGIALALCAAFFYALTAIIARKLQPLPAQHIAFIQVIVGTVMLLPLVHAPEFNGHFPWRYLLILGIVHTGIMYQLLYSAIQKLPTPVTGSLSFIYPLMAIVVDYLVFHHALTPLQLAGGVLILFAAAGNNLGWGEKKPRHGGVSQPSRMN
>NZ_CP011574.1|WP_015367083.1|1224305_1224983_-|respiratory-nitrate-reductase-subunit-gamma
MHFLNMFFFDIYPYIAGSVFLIGSWLRYDYGQYTWRAASSQMLDRKGMNLASNLFHIGILGIFAGHFLGMLTPHWMYESFLPIDVKQKMAMFAGGACGVMTLVGGLLLLKRRLLSPRVRATTTTADILILSLLMVQCALGLLTIPFSAQHMDGSEMMKLVGWAQSVVTFHGGASQHLDGVAFVFRVHLVLGMTLFLLFPFSRLVHIWSAPVEYLTRKYQIVRARR
>NZ_CP011574.1|WP_015705098.1|1224982_1225693_-|nitrate-reductase-molybdenum-cofactor-assembly-chaperone
MIELVIVSRLLEYPDAALWQHQQEMFEALASSEKLAKEDAQALGVFLRDLVAQDPLDAQSAYSELFDRGRATSLLLFEHVHGESRDRGQAMVDLMAQYERHGLLLDSHELPDHLPLYLEYLAQLPEEEALGGLRDVAPILGLLSARLQQRESRYAVLFELLLKLANTQVDSQKVAEKIADEARDDTPQALDAVWEEEQVKFFADQGCGESEISAHQRRFAGAVAPQYLNISNGGQH
>NZ_CP011574.1|WP_015705097.1|1225689_1227225_-|nitrate-reductase-subunit-beta
MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGMEYAWFNNVESKPGVGFPNDWENQEKWKGGWIRKINGKLQPRMGNRAMLLGKIFANPHLPGIDDYYEPFDFDYQNLHNAPESKHQPIARPRSLITGQRMDKITSGPNWEEILGGEFEKRAKDQNFENMQKAMYGQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIESGMPTVCSETCVGRIRYLGVLLYDADAIENAASTENEKDLYQRQLDVFLDPNDPKVIEQALKDGVPQGVIEAAQQSPVYKMAMDWKLALPLHPEYRTLPMVWYVPPLSPIQSAADAGELGSNGILPDVESLRIPVQYLANLLTAGDTQPVLLALKRMLAMRHFKRAETVDGIVDTRALEEVGLSEAQAQEMYRYLAIANYEDRFVVPSSHREQARDAFPEKSGCGFTFGDGCHGSDSEFNLFNSRRIDAIDVTSKTEPHA
>NZ_CP011574.1|WP_045361326.1|1227221_1230965_-|nitrate-reductase-subunit-alpha
MSKFLDRFRYFKQKGETFADGHGQLLKTNRDWEDGYRQRWQHDKIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLKYPLMRKRLMKMWREAKVQHSDPVEAWASIIEDADKAKSFKQARGRGGFVRSSWKEVNELIAASNVYTVKTYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPPASPMTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAITPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDKPSQYFTDYVRRYTDMPMLVMLEERDGYYAAGRMLRAADLVDSLGQEQNPEWKTVAFDEKGEMTVPNGSLGFRWGDKGKWNLEQRDGKTGEEIELRLSLLGSHDDIANVGFPYFGGEGSEHFNKVDLENILLHKLPVKRLQMADGSTALVTTVYDLTMANYGLERGLNDENCATSYDDVKAYTPAWAEKITGVSRAHIIRTAREFADNADKTHGRSMIIVGAGLNHWFHLDMNYRGLINMLIFCGCVGQSGGGWAHYVGQEKLRPQTGWQPLAFGLDWQRPARHMNSTSYFYNHSSQWRYETVTAQELLSPMADKSRYSGHLIDFNVRAERMGWLPSAPQLSVNPLRIADEAKKAGMTPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEYMLKYLLGTENGIQGKDLGKQGGVKPEEVEWRDNGLDGKLDLVVTLDFRLSSTCLYSDIVLPTATWYEKDDMNTSDMHPFIHPLSAAVDPAWESKSDWDIYKGIAKKFSEVCVGHLGKETDVVTLPIQHDSAAEMAQPFDVKDWKKGECDLIPGKTAPHIIPVERDYPATYERFTSIGPLLETIGNGGKGIAWNTQSEMDLLRKLNYTKAEGPAKGQPKLETAIDAAEMILTLAPETNGQVAVKAWKALSEFTGRDHAHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNVHELIPWRTLSGRQSLYQDHQWMRDFGESLLVYRPPIDTRSVKAVMGEKSNGNKEKALNFLTPHQKWGIHSTYSDNLLMLTLSRGGPIVWMSEADAKDLGIEDNDWIEVFNANGALTARAVVSQRVPAGMTMMYHAQERIVNLPGSEVTGQRGGIHNSVTRITPKPTHMIGGYGHLAYGFNYYGTVGSNRDEFVVVRKMKNINWLDGEGNDQVQESVK
>NZ_CP011574.1|WP_015705095.1|1231351_1232740_-|NarK-family-nitrate/nitrite-MFS-transporter
MSQSSIPEKASSSVITDWRPEDPEFWQQRGHRVASRNLWISVPCLLLAFCVWMLFSAVAVNLNKVGFQFTTDQLFMLTALPALSGALLRVPYAFMVPLFGGRRWTAFSTGIMIIPCVWLGFAVQDTSTPFSVFVIISLLCGFAGANFASSMANISFFFPKEKQGGALGVNGGLGNMGVSVMQLVAPLVVSISIFAVFGGSGSEQPDGSMLYLENAAWIWVPFLIIFTLAAWFFMNDLSASKASLSEQLPVLKRLHLWIMALLYLATFGSFIGFSAGFAMLSKTQFPDVQILHYAFFGPFIGALARSMGGAISDRLGGTRVTLVNFVVMAIFCALLFLTLPTNGQGGNFIAFFAVFMVLFLTAGLGSASTFQMISVIFRKLTMDRVKAQGGSEAQAMREAATDTAAALGFISAIGAIGGFFIPKAFGISLDLTGSPAGAMKVFLVFYIACVVITWAVYGRKQK
>NZ_CP011574.1|WP_047739873.1|1233051_1234830_+|nitrate/nitrite-two-component-system-sensor-histidine-kinase-NarX
MLKRLFTPLTLVNQLALIVLLATIIGVAGMAISARLVHGVQGSAHAINKAGSLRMQSYRLLAAIPLTANDQKLFNDMTATVFSPELQYSARRDGQEVQLKALQQYWQLSLGPGMKQAVRQSDVAQDVADFVDRIDQLVTAFDHTTEQRIERVVWIHRILAIGMALLLIFTIIWLRARLLRPWKQLLGMARAVSQRDFTQRAHISGRNEMATLGMALNNMSEELAESYAVLERRVQEKTAGLEQKNEILAFLWQANRRLHSSAPLCERISPVLNGLQGLTLLRDIEVRVYDLEDEDNHQEFACHSDIECDDKGCYLCPRDLPPLPDGGTTLKWRLSDAHNQYGILLATLPVGRHLSHDQQQLVDTLVEQLTSTLALDRHQEKQQQLIVMEERATIARELHDSIAQSLSCMKMQVSCLQMQGDSLPDESRLLLGQIRNELNTSWAQLRELLTTFRLQLTEAGLRPALEASCQEYSAHFGFTVQLDYQLPPRFVPSHQAIHLLQIAREALSNALKHANATEVTVTVSQRDNQVRLVVADNGRGVPENAERSNHYGLIIMRDRAQSLRGDCQVRRRETGGTEVVVTFIPEKAFSIQ
>NZ_CP011574.1|WP_045375156.1|1234840_1235491_+|two-component-system-response-regulator-NarL
MSQQERATILLIDDHPMLRTGVKQLISMAPDIQVIGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRVVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLAASLRANRATSDRDISQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF
>NZ_CP011574.1|WP_015367091.1|1235487_1236864_-|YchO/YchP-family-invasin
MPLPYRLTPSLTLLLLLTGAPAWALIANDSSMPPQTTLPDLGIAPQVDDDAKHFAEMAKKFGEASMSDNGLTTGEQARMFAISKIGNEFSHQLENWLSPWGNANIDLLVDKEGNFTGSKGSWFVPLQDNERYLTWNQYSVTRRENDLVGNVGLGQRWRVGSWLLGYNSFYDKVLSESLARGSIGAEAWGEYLRLSANYYHPLGDWQLRENQTQEQRMAVGYDVTAQARLPFYQHINTSVSVEQYFGDSVDLFHSGTGYHNPVAVSVGLNYTPVPLVTVTAKHKQGENGVSQNNVGLKLNYRFGVPLKQQLAADEVAISNSLRGSRYDSPERDNLPVVEYRQRKNLTVYLATPPWDLHSGETVQLKLQINSLHGIKSLHWQGDTQALSLTPPVNANSADGWSIIMPVWNSEPGAVNRWRLSVVVEDKSGQRVSSNEIALALTEPLVTFTAPDVSWTESP

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Crispr_ID: NZ_CP011574_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011574_2

1588548-1588678

Orphan

Consensus_repeat	Method
GCTGCGCAGGTTGATAAGCCTGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP011574_2

>merge|NZ_CP011574|2|1588548-1588678|CRISPRCasFinder
GCTGCGCAGGTTGATAAGCCTGCGGCTGCGGCGCTACCGGCTGATGGTGTACGGGCGGCTGCGCAGGTTGATAACCCTGCTGTGGCGCAGCTGCCGGTTGTTGATAATGCTGAGCCGGTTGCTGGGGCTGC

>NZ_CP011574|2|2|1588548-1588678|CRISPRCasFinder
GCTGCGCAGGTTGATAAGCCTGC	GGCTGCGGCGCTACCGGCTGATGGTGTACGGGCG
GCTGCGCAGGTTGATAACCCTGC	TGTGGCGCAGCTGCCGGTTGTTGATAAT
GCTGAGCCGGTTGCTGGGGCTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011574.1\|WP_015367492.1\|1596796_1597501_+\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP011574.1\|WP_015367494.1\|1601047_1601365_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP011574.1\|WP_015367495.1\|1601689_1601911_+\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|184960
NZ_CP011574.1\|WP_015367485.1\|1584854_1586198_-\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
NZ_CP011574.1\|WP_047739924.1\|1580836_1583275_-\|dimethylsulfoxide-reductase-subunit-A	unknown	unknown	gnl\|CDD\|184952
NZ_CP011574.1\|WP_032714159.1\|1598162_1598639_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011574.1\|WP_015367484.1\|1583469_1584762_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP011574.1\|WP_001040187.1\|1597860_1598079_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP011574.1\|WP_015367480.1\|1577921_1579070_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|179614
NZ_CP011574.1\|WP_047739923.1\|1580208_1580826_-\|dimethylsulfoxide-reductase-subunit-B	unknown	unknown	gnl\|CDD\|131996
NZ_CP011574.1\|WP_015367477.1\|1573640_1574498_+\|formate-transporter-FocA	unknown	unknown	gnl\|CDD\|182746
NZ_CP011574.1\|WP_045364547.1\|1593265_1595032_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP011574.1\|WP_000228469.1\|1591155_1591650_-\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP011574.1\|WP_015367481.1\|1579343_1580207_-\|dimethyl-sulfoxide-reductase-anchor-subunit	unknown	unknown	gnl\|CDD\|113736
NZ_CP011574.1\|WP_032707682.1\|1595032_1596754_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP011574.1\|WP_015367489.1\|1592182_1593151_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP011574.1\|WP_015367479.1\|1577023_1577764_+\|pyruvate-formate-lyase-1-activating-protein	unknown	unknown	gnl\|CDD\|182994
NZ_CP011574.1\|WP_015367493.1\|1598737_1601017_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP011574.1\|WP_015367486.1\|1586206_1586818_-\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NZ_CP011574.1\|WP_015367478.1\|1574549_1576832_+\|formate-C-acetyltransferase	unknown	unknown	gnl\|CDD\|153087

Protein	Function_ID	Function_description	E-value
NZ_CP011574.1\|WP_015367492.1\|1596796_1597501_+\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.25453e-138
NZ_CP011574.1\|WP_015367494.1\|1601047_1601365_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	3.47571e-47
NZ_CP011574.1\|WP_015367495.1\|1601689_1601911_+\|cold-shock-like-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	7.509e-48
NZ_CP011574.1\|WP_015367485.1\|1584854_1586198_-\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP011574.1\|WP_047739924.1\|1580836_1583275_-\|dimethylsulfoxide-reductase-subunit-A	gnl\|CDD\|184952	PRK14990, PRK14990, anaerobic dimethyl sulfoxide reductase subunit A; Provisional.	0
NZ_CP011574.1\|WP_015367484.1\|1583469_1584762_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP011574.1\|WP_001040187.1\|1597860_1598079_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
NZ_CP011574.1\|WP_015367480.1\|1577921_1579070_-\|MFS-transporter	gnl\|CDD\|179614	PRK03633, PRK03633, putative MFS family transporter protein; Provisional.	0
NZ_CP011574.1\|WP_047739923.1\|1580208_1580826_-\|dimethylsulfoxide-reductase-subunit-B	gnl\|CDD\|131996	TIGR02951, anaerobic_dimethyl_sulfoxide_reductase_subunit_B, DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.	1.9377e-91
NZ_CP011574.1\|WP_015367477.1\|1573640_1574498_+\|formate-transporter-FocA	gnl\|CDD\|182746	PRK10805, PRK10805, formate transporter; Provisional.	0
NZ_CP011574.1\|WP_045364547.1\|1593265_1595032_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP011574.1\|WP_000228469.1\|1591155_1591650_-\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	1.61477e-117
NZ_CP011574.1\|WP_015367481.1\|1579343_1580207_-\|dimethyl-sulfoxide-reductase-anchor-subunit	gnl\|CDD\|113736	pfam04976, DmsC, DMSO reductase anchor subunit (DmsC). The terminal electron transfer enzyme Me2SO reductase of Escherichia coli is a heterotrimeric enzyme composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic polytopic anchor subunit (DmsC).	1.57977e-105
NZ_CP011574.1\|WP_032707682.1\|1595032_1596754_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP011574.1\|WP_015367489.1\|1592182_1593151_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP011574.1\|WP_015367479.1\|1577023_1577764_+\|pyruvate-formate-lyase-1-activating-protein	gnl\|CDD\|182994	PRK11145, pflA, pyruvate formate lyase 1-activating protein.	0
NZ_CP011574.1\|WP_015367493.1\|1598737_1601017_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP011574.1\|WP_015367486.1\|1586206_1586818_-\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.56232e-117
NZ_CP011574.1\|WP_015367478.1\|1574549_1576832_+\|formate-C-acetyltransferase	gnl\|CDD\|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0

>NZ_CP011574.1|WP_015367486.1|1586206_1586818_-|outer-membrane-lipoprotein-chaperone-LolA
MKKLAITCALLSGFVVSQVWADAAGDLKSRLDKVSSFHASFTQKVTDASGNAVQDGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKNATSNTPFMLIARNQSADWQQYNIKQNGDDFVLTPKSGNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDASKFTFTPPQGVTVDDQRK
>NZ_CP011574.1|WP_015367485.1|1584854_1586198_-|replication-associated-recombination-protein-A
MSNFSLDFSDNAFQPLAARMRPENLAQYIGQQHLLAPGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIEQVLNQAMSDKARGYGGQDIILPDETRKAIAELVNGDARRALNTLEMMADMAENDDSGKRVLKAELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARDRPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEQYFPQEMAQTRYYQPTNRGLEGKIAEKLAWLAELDQNSQIKRYR
>NZ_CP011574.1|WP_015367484.1|1583469_1584762_-|serine--tRNA-ligase
MLDPNLLRTEPDAVAEKLARRGFKLDVDKLRALEERRKVLQVQTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEQLDAAKSELETLLAEIRDIALAIPNIPHDDVPVGRDENDNVEVSRWGTPRQFDFEVRDHVTLGEMHGGLDFAAAVKLTGSRFVVMKGQLARLHRALAQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADSSNYALIPTAEVPLTNLVRDEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKVALCSGDMGFSACKTYDLEVWVPAQDTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEIPEVLRPYMRGLEYIG
>NZ_CP011574.1|WP_047739924.1|1580836_1583275_-|dimethylsulfoxide-reductase-subunit-A
MKIKAPDALLAAEVSRRGLMKTTAIGGLAMASNALTLPFTRIAHAADTLAPASEKVVWSACTVNCGSRCPLRMHVVDGAIKYVETDNTGDDNYDGLHQVRACLRGRSMRRRVYNPDRLKYPMKRVGKRGEGKFEQISWEEAFDTIASNMQRLIKDYGNESIYLNYGTGTLGGTLTRSWPPGKTLIARLMNCCGGYLNHYGDYSSAQIAAGLNYTYGGWADGNSPSDIENSQLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWIPIRPGTDAALISALAWVMITENLVDQPFLDKYCVGYDEKTLPVDAPANGHYKAYILGRGSDGIAKTPEWASTITGIPRERIVKLAREIATAKPAYISQGWGPQRHANGEIATRAISMLAILTGNVGINGGNSGAREGSYSLPFERMPTLENPVETSISMFMWTDAIERGPEMTALRDGVRGKDKLDVPIKMIWNYAGNCLINQHSEINRTHEILQDDKKCEMIVVIDCHMTSSAKYADILLPDCTASEQMDFALDASCGNMSYVIFADQAIKPRFECKTIYEMTTELAKRMGVAEKFTEGRTQEGWMRYLYEQSRKAIPELPDFDTFRQQGIFKQRDPQGHHVAYKAFRDDPQANPLTTPSGKIEIYSQELAKIAATWELPEGDVIDPLPIYTPGFENYNDPLSAKYPLQLTGFHYKSRVHSTYGNVDVLQAACRQEMWINPIDAKMRGIVNGDRIRIFNDRGEVHIEAKVTPRMMPGVVALGEGAWYNPDASRVDQAGSINVLTTQRPSPLAKGNPSHTNLVQVEKL
>NZ_CP011574.1|WP_047739923.1|1580208_1580826_-|dimethylsulfoxide-reductase-subunit-B
MTTQYGFFIDSARCTGCKTCELACKDYKNLTPDVSFRRIYEYAGGDWQEDNGVWSQNVFAYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVNEEVCIGCRYCHMACPYGAPQYNAAKGHMTKCDGCHERVAQGKKPICVESCPLRALDFGPIAELREKHGQLAAVAPLPSAHFTRPSIVIKPNANSRPCGDTTGYLANPKEV
>NZ_CP011574.1|WP_015367481.1|1579343_1580207_-|dimethyl-sulfoxide-reductase-anchor-subunit
MGNGWHEWPLMIFTVFGQCVAGGFIVLALALMKGELSREQQRRVIMSMFGLWVLMGIGFIASTMHLGSPMRAFNSLNRVGASSLSNEIASGALFFAVGGIGWLLAVVNKLPSGLRNLWLVVTMILGVIFVWMMIRVYNTIDTVPTWYTIWTPLNFFLTLFIGGPLLGYLLLRVAGVDGWAMRLLPVIMLVALVISVTVALIQGSELATIHSSIQQASALVPNYGSLMAWRTVALVLALVCWIVPQLKGYQPALPLLGLAFVLVLVGEMIGRGVFYGLHMTVGMAIAS
>NZ_CP011574.1|WP_015367480.1|1577921_1579070_-|MFS-transporter
MTIYTRPVQMLLCGLLLLTLAIAVLNTLVPLWLAHENMPTWQVGMVGSSYFTGNLVGTLFAGWVIKRLGFNRSYYLASLIFAVGCVGLGITLGFWTWLSWRFIAGVGCAMIWVVVESALVCSGTSRSRGRLLAAYMMVYYIGTVLGQLMVSKLPTDLMSVLPWVTGLALAAILPLMFTRIMSQADEPHETVRIWPMLKLRQARHGVNGCIISGIVLGSLYGLMPLWLNHQGVSDSGIGFWMAVMVSAGILGQWPVGRLADRYGRLLVLRVQVFVVILGCLAMLSQAAMAPALFVLGASGFTLYPVAMAWACEKVEHHQLVAMNQALLMSYTIGSLLGPTLTAMLMQNFSDNLLFIMIASVSFIYLLTLLRKAGHHPTPVAHA
>NZ_CP011574.1|WP_015367479.1|1577023_1577764_+|pyruvate-formate-lyase-1-activating-protein
MSTIGRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWDTHGGKEITVEELMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAQYLSKKGINVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVHPPKKETMERVKGILEQYGHKVMY
>NZ_CP011574.1|WP_015367478.1|1574549_1576832_+|formate-C-acetyltransferase
MSELNEKLATAWEGFAKGDWQNEVNVRDFIQKNYTPYEGDESFLAGATDATTKLWDSVMEGVKQENRTHAPVDFDTSLASTITSHDAGYIEKALEKIVGLQTEAPLKRAIIPFGGIKMVEGSCKAYNRELDPMLKKIFTEYRKTHNQGVFDVYTPDILRCRKSGVLTGLPDAYGRGRIIGDYRRVALYGIDFLMKDKFAQFNSLQAKLESGEDLEATIRLREEIAEQHRALGQIKEMAAKYGYDISGPATTAQEAIQWTYFGYLAAVKSQNGAAMSFGRTSSFLDIYIERDLQAGKITEQDAQEMVDHLVMKLRMVRFLRTPEYDELFSGDPIWATESIGGMGVDGRTLVTKNSFRFLNTLYTMGPSPEPNITILWSEKLPLSFKKFAAKVSIDTSSLQYENDDLMRPDFNNDDYAIACCVSPMIVGKQMQFFGARANLAKTMLYAINGGVDEKLKMQVGPKSEPIKGDVLNFDEVMERMDHFMDWLAKQYVTALNIIHYMHDKYSYEASLMALHDRDVIRTMACGIAGLSVAADSLSAIKYAKVKPIRDEDGLAVDFEIEGEYPQFGNNDARVDDMAVDLVERFMKKIQKLHTYRNAIPTQSVLTITSNVVYGKKTGNTPDGRRAGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTFSIVPNALGKDDEVRKTNLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAMENPEKYPQLTIRVSGYAVRFNSLTKEQQQDVITRTFTQTM
>NZ_CP011574.1|WP_015367477.1|1573640_1574498_+|formate-transporter-FocA
MKADNPFDLLLPAAMAKVAEEAGVYKATKHPLKTFYLAITAGVFISIAFVFYITATTGTAAMPFGIAKLIGGVCFSLGLILCVICGADLFTSTVLIVVAKASGRITWGQLAKNWLNVYVGNLIGALLFVLLMWLSGEYMTANGGWGLNVLQTADHKMHHTFIEAVCLGILANLMVCLAVWMSYSGRSLMDKAMIMVLPVAMFVASGFEHSIANMFMIPMGIVIRNFASPEFWTAIGSTPESFSHLTVMNFITDNLIPVTIGNIIGGGLLVGLTYWVIYLRGDDHH
>NZ_CP011574.1|WP_000228469.1|1591155_1591650_-|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNAAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP011574.1|WP_015367489.1|1592182_1593151_+|thioredoxin-disulfide-reductase
MGTAKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHISSVDLQNRPFRLVGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIAAEVHLIHRRDTFRAEKILIKRLMDKVESGNIVLHTDRTLEEVTGDQMGVSGLRLRDTKNSDNVETLDVAGLFVAIGHSPNTAIFEGQLALENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADACK
>NZ_CP011574.1|WP_045364547.1|1593265_1595032_+|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MNKTRQQELTRWLKEKSIISRRWLMISRLLGVVSGLLIVAQAWFLARILHRMIMENIPATALLLPFTLLALVLILRAWVVWLRERVGFHAGQHIRYEIRRQVLDRLQQAGPAWIQGKPAGSWATLILEQIDDMHDYYARYLPQMTLAACVPLLIVITIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALGRLSGHFLDRLRGMETLRLFNRGEAEINNIRDASQDFRQRTMEVLRLAFLSSGVLEFFTSLSIALVAVYFGFSYLGELDFGHYGVGVTLMSGFLTLILAPEFFQPLRDLGTFYHAKAQAIGAADSLKTFMETPLAQAERGEKTLSDHELIRLEARDLMVKSPDGKTLAGPLSFTLNAGERVVLVGQSGSGKSSLLNTLTGFLPYEGSLQVNGVELRDLDAERWRRLISWVGQNPQLPAATLRENVLLAWPEATEAQLQLALDKAWVSEFISQLPQGINTPLGDQAGGLSVGQAQRIAVARALLVPCRLLLLDEPAASLDAHSEQRVMQALSNASTQQTTLMVTHQLAGLAEWDAIWVMQDGQIVEQGGYGQLSAAGGAFASLLAHRQEEI
>NZ_CP011574.1|WP_032707682.1|1595032_1596754_+|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWLLTLGVVLAIVTLLASIGLLTLSGWFLSASAVVGVAGIYSFNYMLPAAGVRGAAIIRTAGRYFERLVSHDATFRVLQHLRVATFSKLLPLSPAGLARFRQGELLNRIVADVDTLDHLYLRVISPLVGALVVILVVTIGLSVLDVTLALTLGGIMLATLLLLPPLFYRAGKPTGEQITQLRGQYRQQLTSWLQGQAELMLFNASDRYRKQMEKTEQRWQEAQRRQAELTALSQALMLLIGGIAVIAMLWMASEGVGGNSQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASARRITQITEQQPEVTFSQQAPQSFSQVALTLNEVTFSYPQQSAPALKDISLQVAAGEHIAILGRTGCGKSTLLQLLTRAWDPANGQIQLNGQPLSELSETTLRQAMSVVPQRVHLFSATLRDNLLLAAPQVSDARLADILARVGLEKLLEDSGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLMLLDEPTEGLDATTESQILDLLSEVMRDKTVLMVTHRLRGLARFNQIIVMDNGQIIEQGSHAELLAKQGRYYQFKQRL
>NZ_CP011574.1|WP_015367492.1|1596796_1597501_+|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRDSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPEQFHYSRSMKRFHQRSPYRVTLNHAFGQVIEGCASHRDEGTWITHGIVQAYHQLHELGHAHSIEVWDEDRLVGGMYGVAQGALFCGESMFSRAENASKTALMIFCQAFAQGGGRLIDCQVLNAHTASLGAIEIPRRDYLDYLSVLRTYRLPERFWVPRVLFTGNG
>NZ_CP011574.1|WP_001040187.1|1597860_1598079_+|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP011574.1|WP_032714159.1|1598162_1598639_-|hypothetical-protein
MKPGKLLLCASLALFSITAQAQCPDMTGSYRFTGAEHPFYLVKIPGQSRYNAFFPNEAGQFTRVQTVDISAEEMKTQQIPECALIIQRVGMMMKTNKGEKVDVMTQSQNYTTEKTITTEYGLMIYAGFASDFIGIDKISAQVPKEAQNDTLPLITEAQ
>NZ_CP011574.1|WP_015367493.1|1598737_1601017_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPATEEERDTQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPSQPSENNASQPGNEEQAGGEDRMENFTTNLNQLARVGGIDPLIGRDKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSGGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDVTEPSVEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSRSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLAKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIQQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTTVIHQVVDKFIVELQVQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVELDKANNVLTYGFHSAQKHKPEAAH
>NZ_CP011574.1|WP_015367494.1|1601047_1601365_-|ATP-dependent-Clp-protease-adapter-ClpS
MSKRDWLDFDQLVEDEVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLTVHYEGKAICGVFTAEVAETKVAMVNQYAKENEHPLLCTLEKA
>NZ_CP011574.1|WP_015367495.1|1601689_1601911_+|cold-shock-like-protein-CspD
MEMGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKGNHASVIVPVEAETAA

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Crispr_ID: NZ_CP011574_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011574_3

2350160-2350274

Orphan

Consensus_repeat	Method
CGCTGTAGCCCCGGTAAGCGCTAGCGCCACCGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011574_3

>merge|NZ_CP011574|3|2350160-2350274|CRISPRCasFinder
CGCTGTAGCCCCGGTAAGCGCTAGCGCCACCGGGGATTTTCCCGCAGGCGGCGCCTTGTCCGGGCTACTAAATCGCACAACGCTGTAGCCCCGGTAAGCGCTAGCGCCACCGGGG

>NZ_CP011574|3|3|2350160-2350274|CRISPRCasFinder
CGCTGTAGCCCCGGTAAGCGCTAGCGCCACCGGGG	ATTTTCCCGCAGGCGGCGCCTTGTCCGGGCTACTAAATCGCACAA
CGCTGTAGCCCCGGTAAGCGCTAGCGCCACCGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011574.1\|WP_032713395.1\|2342946_2344461_-\|dGTPase	unknown	unknown	gnl\|CDD\|235320
NZ_CP011574.1\|WP_032709909.1\|2348799_2350080_+\|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl\|CDD\|234607
NZ_CP011574.1\|WP_020079586.1\|2352275_2353166_-\|Fe(3+)-hydroxamate-ABC-transporter-substrate-binding-protein-FhuD	unknown	unknown	gnl\|CDD\|236719
NZ_CP011574.1\|WP_032706960.1\|2341371_2342805_-\|serine-endoprotease-DegP	unknown	unknown	gnl\|CDD\|236802
NZ_CP011574.1\|WP_015368192.1\|2359399_2361829_-\|ATP-dependent-helicase-HrpB	unknown	unknown	gnl\|CDD\|236950
NZ_CP011574.1\|WP_020079587.1\|2353165_2353963_-\|Fe3+-hydroxamate-ABC-transporter-ATP-binding-protein-FhuC	unknown	unknown	gnl\|CDD\|182561
NZ_CP011574.1\|WP_015368189.1\|2356476_2359029_-\|bifunctional-glycosyl-transferase/transpeptidase	unknown	unknown	gnl\|CDD\|236544
NZ_CP011574.1\|WP_015368181.1\|2346775_2347120_-\|iron-sulfur-cluster-insertion-protein-ErpA	unknown	unknown	gnl\|CDD\|184186
NZ_CP011574.1\|WP_047740042.1\|2362437_2363154_+\|DNA/RNA-nuclease-SfsA	unknown	unknown	gnl\|CDD\|234733
NZ_CP011574.1\|WP_032709911.1\|2346070_2346697_+\|TRIC-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|182564
NZ_CP011574.1\|WP_015368175.1\|2340037_2341195_-\|CdaR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183155
NZ_CP011574.1\|WP_015704429.1\|2359252_2359387_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011574.1\|WP_047740040.1\|2337013_2340001_+\|viral-enhancin-protein	unknown	unknown	gnl\|CDD\|367432
NZ_CP011574.1\|WP_007373199.1\|2363317_2363773_+\|RNA-polymerase-binding-protein-DksA	unknown	unknown	gnl\|CDD\|182722
NZ_CP011574.1\|WP_015368188.1\|2354008_2356234_-\|ferrichrome-porin-FhuA	unknown	unknown	gnl\|CDD\|236643
NZ_CP011574.1\|WP_015368182.1\|2347201_2348620_-\|H(+)/Cl(-)-exchange-transporter-ClcA	unknown	unknown	gnl\|CDD\|235385
NZ_CP011574.1\|WP_015704439.1\|2344544_2345243_+\|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase	unknown	unknown	gnl\|CDD\|180148
NZ_CP011574.1\|WP_020079590.1\|2361901_2362438_+\|RNA-2',3'-cyclic-phosphodiesterase	unknown	unknown	gnl\|CDD\|185079
NZ_CP011574.1\|WP_047740041.1\|2350296_2352279_-\|Fe(3+)-hydroxamate-ABC-transporter-permease-FhuB	unknown	unknown	gnl\|CDD\|236720
NZ_CP011574.1\|WP_015368179.1\|2345235_2346036_+\|vitamin-B12-ABC-transporter-substrate-binding-protein-BtuF	unknown	unknown	gnl\|CDD\|179575

Protein	Function_ID	Function_description	E-value
NZ_CP011574.1\|WP_032713395.1\|2342946_2344461_-\|dGTPase	gnl\|CDD\|235320	PRK04926, dgt, deoxyguanosinetriphosphate triphosphohydrolase; Provisional.	0
NZ_CP011574.1\|WP_032709909.1\|2348799_2350080_+\|glutamate-1-semialdehyde-2,1-aminomutase	gnl\|CDD\|234607	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase.	0
NZ_CP011574.1\|WP_020079586.1\|2352275_2353166_-\|Fe(3+)-hydroxamate-ABC-transporter-substrate-binding-protein-FhuD	gnl\|CDD\|236719	PRK10576, PRK10576, Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD.	0
NZ_CP011574.1\|WP_032706960.1\|2341371_2342805_-\|serine-endoprotease-DegP	gnl\|CDD\|236802	PRK10942, PRK10942, serine endoprotease DegP.	0
NZ_CP011574.1\|WP_015368192.1\|2359399_2361829_-\|ATP-dependent-helicase-HrpB	gnl\|CDD\|236950	PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional.	0
NZ_CP011574.1\|WP_020079587.1\|2353165_2353963_-\|Fe3+-hydroxamate-ABC-transporter-ATP-binding-protein-FhuC	gnl\|CDD\|182561	PRK10575, PRK10575, Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC.	0
NZ_CP011574.1\|WP_015368189.1\|2356476_2359029_-\|bifunctional-glycosyl-transferase/transpeptidase	gnl\|CDD\|236544	PRK09506, mrcB, bifunctional glycosyl transferase/transpeptidase; Reviewed.	0
NZ_CP011574.1\|WP_015368181.1\|2346775_2347120_-\|iron-sulfur-cluster-insertion-protein-ErpA	gnl\|CDD\|184186	PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional.	1.42921e-81
NZ_CP011574.1\|WP_047740042.1\|2362437_2363154_+\|DNA/RNA-nuclease-SfsA	gnl\|CDD\|234733	PRK00347, PRK00347, DNA/RNA nuclease SfsA.	3.76788e-141
NZ_CP011574.1\|WP_032709911.1\|2346070_2346697_+\|TRIC-cation-channel-family-protein	gnl\|CDD\|182564	PRK10578, PRK10578, hypothetical protein; Provisional.	4.72356e-129
NZ_CP011574.1\|WP_015368175.1\|2340037_2341195_-\|CdaR-family-transcriptional-regulator	gnl\|CDD\|183155	PRK11477, PRK11477, CdaR family transcriptional regulator.	0
NZ_CP011574.1\|WP_047740040.1\|2337013_2340001_+\|viral-enhancin-protein	gnl\|CDD\|367432	pfam03272, Mucin_bdg, Putative mucin or carbohydrate-binding module. This family is the putative binding domain for the substrates of enhancin, and other similar metallopeptidases. This is not the enzymically active, peptidase, part of the proteins - see pfam13402.	1.04194e-24
NZ_CP011574.1\|WP_007373199.1\|2363317_2363773_+\|RNA-polymerase-binding-protein-DksA	gnl\|CDD\|182722	PRK10778, dksA, RNA polymerase-binding protein DksA.	8.14556e-92
NZ_CP011574.1\|WP_015368188.1\|2354008_2356234_-\|ferrichrome-porin-FhuA	gnl\|CDD\|236643	PRK10044, PRK10044, ferrichrome outer membrane transporter; Provisional.	0
NZ_CP011574.1\|WP_015368182.1\|2347201_2348620_-\|H(+)/Cl(-)-exchange-transporter-ClcA	gnl\|CDD\|235385	PRK05277, PRK05277, H(+)/Cl(-) exchange transporter ClcA.	0
NZ_CP011574.1\|WP_015704439.1\|2344544_2345243_+\|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase	gnl\|CDD\|180148	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase.	1.01373e-138
NZ_CP011574.1\|WP_020079590.1\|2361901_2362438_+\|RNA-2',3'-cyclic-phosphodiesterase	gnl\|CDD\|185079	PRK15124, PRK15124, RNA 2',3'-cyclic phosphodiesterase.	2.65482e-117
NZ_CP011574.1\|WP_047740041.1\|2350296_2352279_-\|Fe(3+)-hydroxamate-ABC-transporter-permease-FhuB	gnl\|CDD\|236720	PRK10577, PRK10577, Fe(3+)-hydroxamate ABC transporter permease FhuB.	0
NZ_CP011574.1\|WP_015368179.1\|2345235_2346036_+\|vitamin-B12-ABC-transporter-substrate-binding-protein-BtuF	gnl\|CDD\|179575	PRK03379, PRK03379, vitamin B12-transporter protein BtuF; Provisional.	8.32544e-165

>NZ_CP011574.1|WP_032709909.1|2348799_2350080_+|glutamate-1-semialdehyde-2,1-aminomutase
MSKSENLYNAARELIPGGVNSPVRAFTGVGGTPLFIERADGAYLYDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAELVTELVPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPADFAKHTLTCTYNDLASVRAAFEQYPQDIACIIVEPVAGNMNCIPPQPEFLPGLRALCDEFGALLIIDEVMTGFRVALAGAQSYYGVEPDLTCLGKIIGGGMPVGAFGGRREVMDALAPTGPVYQAGTLSGNPIAMAAGFACLSEVAQPGVHETLTELTNQLADGLLNAARETGIPLVVNNVGGMFGIFFTEAETVTCYQDVVKCDVERFKRFFHLMLEEGVYLAPSAFEAGFMSVAHSEADINNTIDAARRVFAKL
>NZ_CP011574.1|WP_015368182.1|2347201_2348620_-|H(+)/Cl(-)-exchange-transporter-ClcA
MKAETPSFEAHQFVRVRRSDAVRRLIQRDKTPLAVLLMAAVVGTLAGLVGVAFEKSVNWVQNQRIGALVQVADHWYLVWPLAFILSGLLAMVGYFLVRRFAPEAGGSGIPEIEGALEELRPVRWWRVLPVKFIGGMGTLGAGMVLGREGPMVQLGGNIGRMVVDVFRLRSPEARHTLLATGAASGLSAAFNAPLAGILFIIEEMRPQFRYNLISIKAVFTGVIMSSIVFRIFNGEGAIIEVGKLSNAPVNTLWLYLVLGMIFGCFGPLFNALVLRTQDMFQRFHGGNIKKWVLIGGLIGGLCGLLGLMQPTAVGGGFNLIPIAAAGNFSVGLLLFIFIARVITTLLCFSSGAPGGIFAPMLALGTLLGTAFGMAAIPLFPSYHLDAGTFAIAGMGALLAASVRAPLTGIVLVLEMTDNYQLILPMIITCLGATLLAQFLGGKPLYSTILQRTLAKQKAEEAAKAQQVPRENT
>NZ_CP011574.1|WP_015368181.1|2346775_2347120_-|iron-sulfur-cluster-insertion-protein-ErpA
MSDDVALPLEFTEAAANKVKHLIADEDNPNLKLRVYITGGGCSGFQYGFTFDDQINEGDMTIEKQGVGLVVDPMSLQYLVGGAVDYTEGLEGSRFIVTNPNAKSTCGCGSSFSV
>NZ_CP011574.1|WP_032709911.1|2346070_2346697_+|TRIC-cation-channel-family-protein
MLVYWLDIIGTAVFAISGVLLAGKLRMDPFGVLVLGVVTAVGGGTIRDMALANGPVFWVKDPTDLVVAMVTSMLTILLVRQPRRMPKWVLPVLDAVGLAVFVGIGVNKAFIAHTGPLVAICMGVVTGVGGGIIRDVLAREVPMILRTEIYATACIVGGIVHATAHYTFQLSLENSAMLGMVVTLGIRLAAIRWHLKLPTFALDDNGRS
>NZ_CP011574.1|WP_015368179.1|2345235_2346036_+|vitamin-B12-ABC-transporter-substrate-binding-protein-BtuF
MAKSLQKALTALLLLAPAWLFAAPRVVTLSPANTELAFAAGITPVGVSSYSDYPPAAAKIEQVASWQGMNLERIVALKPDLVLAWRGGNAERQVNQLSSLGIKVIWVETGSIEQIISALRMLAPWSPQPEKARQAAQAMQDDYQALKARYANAPKKRVFLQFGANPLFTSNSASIQNQVLSLCGGENIFAASRVPWPQVSREQVLSRHPQAIVITGDASKIPAVDRYWQNQLTISLIALHSDWFERAGPRIILAAKQLCTALEQVK
>NZ_CP011574.1|WP_015704439.1|2344544_2345243_+|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase
MKIGIIGAMEEEVTLLRDKIENRQTISIGGSEIYTGQLHGTEVALLKSGIGKVAAAMGATLLLERCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFKADDKLIAAAETCIKALNLNAVRGLIVSGDAFINGSVGLAKIRHNFPQAVAVEMEATAIAHVCHNFSIPFVVVRAISDVADQQSHLSFDEFLAVAAKQSTLMVENLVQNLARG
>NZ_CP011574.1|WP_032713395.1|2342946_2344461_-|dGTPase
MANIDFRNKIHWRRRYRSPQGVETEREILRVFESDRGRIINSPAIRRLQQKTQVFPLERNAAVRTRLTHSLEVQQVGRYIAKEVLSRLKEQKLLECYGLDELSGPFESVVEMACLMHDIGNPPFGHFGEAAINDWFSKRLAPKDAASQPLSQDRCQVDALRLHDGEGVLNELRRKVRQDLCCFEGNAQGIRLVHTLMRMNLTWTQVGCILKYTRPAWWRGETLASHSYLMKKPGYYLAEEEYIARLRKELDLAPYNRFPLTWIMEAADDISYCVADLEDAVEKRIFSAEQLYQHLYDAWGTHEKGSLFAQVVENAWEKSRANSLSRSTEDQFFMYLRVNTLNKLVPYAAHRFIENLPAIFNGDFNHALLEDDSDCSQLLELYKNVAIKQVFSHPDVEQLELQGYRVISGLLDIYEPLLKLSLEEFSQLVEQDRVRSLPIASRLFQKLSTRHRLAYVEAVNKLSRDAEEYPVLEYYYRCRLIQDYISGMTDLYAWDEYRRLMAVE
>NZ_CP011574.1|WP_032706960.1|2341371_2342805_-|serine-endoprotease-DegP
MKKTTLAMSALALSLGLALSPLSASAAETASSATTAQQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDNSPFCQDGSPFQSSPFCQGGGQGAPGDNAQQQKFMALGSGVIIDAAKGYVVTNNHVVDNATTIKVQLSDGRKFDAKVVGKDPRSDIALIQIQDPKNLTAIKLADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNVENYENFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTEQMVKFGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVMPGSAAAKAGIKAGDVITTLNGKPISSFAALRAQVGTMPIGSKVELGLLRDGKPVNVTVELQQSNQNQVDSSSIFNGIQGAEMSNKGQDKGVVVSNVKAGTPAAQIGLKKGDIIVGANQQPVKNIADLRKIFDAKPSVLALNIKRGDTSIYLLMQ
>NZ_CP011574.1|WP_015368175.1|2340037_2341195_-|CdaR-family-transcriptional-regulator
MAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALLVLSQGRVVDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPESLRKYGELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQAEENTPALNEWAQRLGIDLNQPRVVAMIEVDSGQLGVDSAMAELQQLQTALTTPDRNNLVAIVSLTEMVVLKPALNAFGRWDADDHCKRVEQLIARMKENGQLQFRVALGNFFTGPGSIARSYRTARTTMMVGKQRMPESRSYFYQDLMLPVLLDSLRGGWQANELARPLTRLKAMDNNGLLRRTLQAWFRHNVQPLATSKALFIHRNTLEYRLNRISELTGLDLGSFDDRLLLYIALQLDEQR
>NZ_CP011574.1|WP_047740040.1|2337013_2340001_+|viral-enhancin-protein
MTQEIEQKCYTLQSASWLDNAGFEKGRKHDRQALGFILPANTVLKIRQTDLSNGISTLRLMCDDSAVEKSSALTTNWTTISTTVDSVPFVDTLFTDSPCEFSVIYQQPAATKPLPCWKSGQSEETFFLDWENNKSSFALVDLDVINLLLPYADRDNAMKAGLAALHRFYNHLFTSYNDWAGLSENPDSQWNQNVANRYFLRADKHGVGSAYYNTNWCAQTAATVGEGWLDNVATQWVILHEIGHGYQGKFMQDPTLSVSEVWNNIYASFYQQLTLSQDNHLYTDGWLYNYGKLAAQEAQLVNYITDKTPVTSWGLRSRLQFLMLMLFKAGIASFRTFNQNYRQLANSESFQPSDHQLADMLATAIATSAGYDVTPFIELCGLTLKNATRENIVSLATKPLYPLYRFLPQSEWDSARQQLGLDSFFWLVDNSELAILGKTGALTLTLNIDRPEQIYGQTLAIKDNCGNHYSLVINSDVLTLKDMPIGVYQVELPKGRSQKYRPDISYITVKEGANTVTVNYVQQNDTSERNVTISFLGYSDAPFAHLDVDYENQQLILNVTSATPHSYYPGTLYAAVSVLSANGEKVFERKMTGTNCATGKVIIPFSPHYHLYITHMEPGRLKTSPGYLTLVAREKYQLMRIDDNGLYNFILGNSPADDLEAIFEHNAQAIRTQPSLVAQEECVCKNDLWLMLPHIEEPRRSELLKAYADVLPQDNNVPGELTGKSVTLNLRGQGNNEFCQVVIDNKQRAMTVATRAGTPHSYYTTHTYASITVTAEDDAVVYQRSYAGATNNLASSETIALAEGMIIDIFHDEPFRSSATNGTTQNAVTLTQHNRWRVVKAGLEVYTLTPDKPDEEATDTEEETQEATALYGDRFSLQLLGDDDVCFAGMEMDIGSGALTFSANAVVPNKHFTTTYATVNVYNTRGSVVYRQSIKGSSQLGDYVDTAILDEGYTIEVFHAEAGNRSVIINPLNGNSWQQPNTVTWQVTTRGLQRL
>NZ_CP011574.1|WP_047740041.1|2350296_2352279_-|Fe(3+)-hydroxamate-ABC-transporter-permease-FhuB
MNARFSPLAMILLAVLLVAAFALSIVNLQVALPYAQWRQALWQPDSDNIAQMLFHYSLLPRLAVSLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLGMTVTTLWAIPGVLASQFAALAGACLVGALVFGVSWGKRLSPVTLILAGLVVSLYCGAVNQLMVIFHHDQLQSMFLWSTGTLTQTDWSVAQRLWPQLLGGAMLTLLLLRPLTLMGLDDGVARNLGLALSLARLGVLTLAIVISALLVNAVGIIGFIGLFAPLLAKMLGARRLLSRLVLAALLGALILWLSDQIILWLSRIWREVSTGSVTALIGAPLLLWLLPRLRSISAPVMNGGDKALIERRNVQWFALGGLALMLLAVTAALTFGRDAQGWQWASGDLLEQLMPWRWPRVFSALFAGVMLAVAGCIIQRLTGNPMASPEVLGISAGAAFGVVLMLFFVPGNAFVWLLPAGSLGAAATLLVILVAAGRGGFSPHRMLLAGMALSTAFTMLLMMLQASGDPRMAQILTWMSGSTYSATPEMVLRSGVVMLALLALAPLCRRWLTILPLGGEAARAVGMALTPSRIGLLLLAASLTATATLTIGPLSFVGLMAPHIARMMGFRRTMPHMVISGLIGGMLLVFADWCGRMIMFPYQIPAGLLSTFIGAPYFIYLLRKQSR
>NZ_CP011574.1|WP_020079586.1|2352275_2353166_-|Fe(3+)-hydroxamate-ABC-transporter-substrate-binding-protein-FhuD
MENSNFFSRRRLLTAMALSPLLWQMRGAQAANVDPQRVVALEWLPAELLLALGVTPYGVADIPNYNLWVNEPALPASVIDVGLRTEPNLELLTQMKPSFIVWSAGYGPSPEKLARIAPGRGFTFSDGKRPLAMAQRSLQEMADLLGKQQQAKRHLAEFDALMESLRPRFVDRDDRPLLMISLLDARHVLVFGENCLFQEVLDRFGIKNAWHGEAAFWGSITVGIDRLAEFKEADVICFDHGNDREMAQLMATPLWQAMPFVRAGRFQRLPAVWFYGATLSAMHFARVLADTQGRAV
>NZ_CP011574.1|WP_020079587.1|2353165_2353963_-|Fe3+-hydroxamate-ABC-transporter-ATP-binding-protein-FhuC
MQEQTPHSETTFALNRVTFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGDVLLDGQPLDSWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAIALVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQQRGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRSETLEQIYGIPMGILPHPAGAAPVSFVY
>NZ_CP011574.1|WP_015368188.1|2354008_2356234_-|ferrichrome-porin-FhuA
MARLKTAQPNHSLRKIAVVVATAVSGMSVYAQAAEQPKEETLVVTAAPASQESAWGPAPTIAAKRSATATKTDTPIEKTPQSISVVTNEEMQMHQFQSVKEALGYTPGVTVSSRGASNTYDFVIIRGFSSVGLNQNNYLDGLKLQGDFYNDAVVDPYMLERVEVMRGPTSVLYGKSNPGGIVSMVSKRPTTEPLKEVQFKMGTDNLFQTGFDFSDALDEDGVFSYRLTGVARSNNEQQQNAEQQRYAIAPSFSWRPDDKTNFTFLSYFQNEPETGYYGWLPKEGTVQPLPNGGHLPTSFNEGATNNTYSRNQKMVGYSFEHGFNDTFTVRQNLRFSEMKVAQKSAYGTGLCNNSMNAFNSYCQSLTPEQQAHYLGRGTVVDNERLQNFSVDTQLQSNFSTGNVDHILLTGVDYMRMRNDISALFGNAPSLDLNNLPSMSSVDFGDAVPYQMNESKQTGIYLQDQAEWNKWVLTLGGRYDWSKQATTVRSDNGYIERNDHQFTWRGGINYLFDNGISPYVSYSQSFEPNAFSLYSTPRVAYEPSKGEQYEAGVKYVPKDMPVVVTGAVYQLTKSDTLMADPNNALNQVPAGEIRSRGVELEAKAALNANINMTASYTYTDAIYTKDTNLKGNTVVQVPKHMASLWGDYTFYDGPLSGLTLGTGGRFIGSSYGDPANTFKVGSAAVMDAVVKYDLARFGMAGSNIAVNVNNLLDREYVASCFETYGCFWGAERQVVATATFRF
>NZ_CP011574.1|WP_015368189.1|2356476_2359029_-|bifunctional-glycosyl-transferase/transpeptidase
MAGDDREPIGRKGRPSRPAKQKVTRRRVREEDYDDDYDDDYEDERPMPKKGKGKGNKPRRKRSWLWLLVKLGIVFAVIIAAYGVYLDQKIRSRIDGKVWELPAAVYGRMVNLEPDMQISKNEMVRLLNATQYRQVSAMTRPGEYTVQANSIEMIRRPFDFPDSKEGQVRARLTFDGDHLDTIENMDNNRQFGFFRLDPRLITMLQSANGEQRLFVKRSGFPDLLVDTLLATEDRHFYEHDGISLYSMGRAVLANLTAGRTVQGASTLTQQLVKNLFLSSERSYWRKANEAYMALIVDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPVEELSLDQQALLVGMVKGASIYNPWRNPKLALERRNLVLRLLQQQNIIDQELYDMLSARPLGVQPRGGVISPQPAFMQMVRQELQAKLGDKVKDLSGVKIFTTFDPVAQDAAEKAAIEGIPVLKKQRKLPDLETAMVVVDRFTGEVRAMVGGAEPQFAGYNRAMQARRSIGSLAKPATYLTALSQPNQYRLNTWIADAPVTIRLSNGQTWSPQNDDRRFSGQVMLVDALTRSMNVPTVNLGMSLGLPAITDTWQKLGVPKDQLNAVPAMILGALNLTPIEVAQAFQTIASGGNRATLSALRSVIAEDGTVLYQSYPQAERAVPAQAAYMTLWTMQQVVQRGTGRQLGAKYPGLHLAGKTGTTNNNVDTWFAGIDGSQVTITWVGRDNNQPTKLYGASGAMSIYQRYLANQTPTPLALTPPEDVVDMGVDSNGYFQCSGGMRTLPVWTTSPDALCRQGEALQQQQQQQQEANNPFNQSGQQQPANQPQQQQQQPAKQEKSDGVAGWIKDMFGGN
>NZ_CP011574.1|WP_015704429.1|2359252_2359387_-|hypothetical-protein
MLWAWFRKSLAAVTRRNIYVIKKHHILPFIAFYGCKMLVKNGAD
>NZ_CP011574.1|WP_015368192.1|2359399_2361829_-|ATP-dependent-helicase-HrpB
MSSLPVAAILPELLSALQQAPQVLLNAPTGAGKSTWLPLQILADGNIDGRIILLEPRRLAARNVAQRLAELLGEKPGETIGYRMRAESCVGPNTRLEVVTEGILTRTLQHDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQRLLPEAPVVVSEGRAFPVERRFAPLASHQRFAEAVAIAAADLLREEQGSMLLFLPGVGEIQRVQEQLSERVASDVLLCPLYGALPLSEQRKAILPAPAGMRKVVLATNIAETSLTIEGIRLVVDSAQERVARFDPRTGLTRLITQRISQASMTQRAGRAGRLEPGICLHLLAKEQAERAAAQSDPEILQSDLSGLLLELLQWGCRDPAELRWLDLPPAINLAAARRLLTALSALEGERLSAHGRQMAALGNDPRLAAMLTAADSADDAATAAKLAAILEEPPRGGSSDLGAAFARQQGNWQQRAQQLLKRLASRGGQPDAARMAALLAPAFADRIARRRGQEGRYQLANGMGAMLDADDALGRHEWLIAPLLLQGSSAPDARILLALPLDIDQLVAQRPELIQRSDTVEWDEAQGTLKAWRRSCIGQLVIKTQPLAKPSEAELHQAMLNGIRDKGLEVLNWTPEAEQLRLRLHCAAQWLPEADWPAVDDASLLASLEAWLLPQMTGVHSLRALKAVDLRQALQNWLPWTLRQKLDSELPTHYTVPTGTRIAIRYHEDNPPALAVRMQEMFGEAATPRIAEGRVPLVLELLSPAQRPLQITRDLSAFWQGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS
>NZ_CP011574.1|WP_020079590.1|2361901_2362438_+|RNA-2',3'-cyclic-phosphodiesterase
MSEPKRLFFALELPKAIQKQIIHWRAAHFADDAGRPVAADNLHLTLAFLGDVSAEKQRALSAMAGRIQQPPFTLTLDDAGQWLRSRVVWLGTRQPPRGMLQLANMLRAQAARSGCYQSPQPFHPHITLLRDARHAVPLPPPGFCWQVPVNEFVLYESSFIRGRTRYNALERYPFTREL
>NZ_CP011574.1|WP_047740042.1|2362437_2363154_+|DNA/RNA-nuclease-SfsA
MLFTPPLQSATLIKRYKRFLADVITPEGQALTLHCPNTGAMTGCAAPGDTVWYSTSDNPKRKYAHTWELTETRQGAVICVNTLRANTLAKEAVLAGNIPELTGYNILKSEVKYGEENSRIDLMLQAEDRRNCYIEVKSVTLAEKEYGYFPDAVTARGQKHLRELMCVAAAGHRAVILFAVLHSAIDRFSPAHHIDAKYAQLLIEAQEKGVEILAWKAELSTKMMTLNKPIAVALTPGN
>NZ_CP011574.1|WP_007373199.1|2363317_2363773_+|RNA-polymerase-binding-protein-DksA
MQEGQNRKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFKRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGFCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP011574_2	2.2\|1588628\|28\|NZ_CP011574\|CRISPRCasFinder	1588628-1588655	28	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	238670-238697	1	0.964
NZ_CP011574_2	2.1\|1588571\|34\|NZ_CP011574\|CRISPRCasFinder	1588571-1588604	34	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	238613-238646	2	0.941
NZ_CP011574_1	1.1\|1222741\|27\|NZ_CP011574\|CRISPRCasFinder	1222741-1222767	27	MN850601	Escherichia phage inny, complete genome	26417-26443	4	0.852
NZ_CP011574_1	1.1\|1222741\|27\|NZ_CP011574\|CRISPRCasFinder	1222741-1222767	27	MN850584	Escherichia phage arall, complete genome	111745-111771	4	0.852
NZ_CP011574_1	1.1\|1222741\|27\|NZ_CP011574\|CRISPRCasFinder	1222741-1222767	27	FR775895	Enterobacteria phage phi92, complete genome	34608-34634	4	0.852
NZ_CP011574_1	1.1\|1222741\|27\|NZ_CP011574\|CRISPRCasFinder	1222741-1222767	27	MN850632	Escherichia phage alia, complete genome	123262-123288	4	0.852
NZ_CP011574_1	1.1\|1222741\|27\|NZ_CP011574\|CRISPRCasFinder	1222741-1222767	27	MN850573	Escherichia phage muut, complete genome	28894-28920	4	0.852
NZ_CP011574_1	1.1\|1222741\|27\|NZ_CP011574\|CRISPRCasFinder	1222741-1222767	27	MG065689	UNVERIFIED: Campylobacter phage A110a, complete genome	130286-130312	5	0.815
NZ_CP011574_1	1.1\|1222741\|27\|NZ_CP011574\|CRISPRCasFinder	1222741-1222767	27	MT932211	Escherichia phage VEcB, complete genome	33352-33378	5	0.815
NZ_CP011574_1	1.1\|1222741\|27\|NZ_CP011574\|CRISPRCasFinder	1222741-1222767	27	KU522583	Enterobacteria phage ECGD1, complete genome	44380-44406	5	0.815
NZ_CP011574_1	1.1\|1222741\|27\|NZ_CP011574\|CRISPRCasFinder	1222741-1222767	27	MF805809	Escherichia phage vB_EcoM_PHB05, complete genome	34264-34290	5	0.815
NZ_CP011574_1	1.1\|1222741\|27\|NZ_CP011574\|CRISPRCasFinder	1222741-1222767	27	MH675927	Escherichia phage vB_vPM_PD114, complete genome	34937-34963	5	0.815
NZ_CP011574_1	1.1\|1222741\|27\|NZ_CP011574\|CRISPRCasFinder	1222741-1222767	27	MG065645	UNVERIFIED: Campylobacter phage A145, complete genome	90878-90904	5	0.815
NZ_CP011574_1	1.1\|1222741\|27\|NZ_CP011574\|CRISPRCasFinder	1222741-1222767	27	MG065639	UNVERIFIED: Campylobacter phage A150, complete genome	6319-6345	5	0.815
NZ_CP011574_1	1.1\|1222741\|27\|NZ_CP011574\|CRISPRCasFinder	1222741-1222767	27	MG065656	UNVERIFIED: Campylobacter phage C3, complete genome	107977-108003	5	0.815
NZ_CP011574_1	1.1\|1222741\|27\|NZ_CP011574\|CRISPRCasFinder	1222741-1222767	27	MH816848	Escherichia phage vB_vPM_PD06, complete genome	114937-114963	5	0.815
NZ_CP011574_2	2.2\|1588628\|28\|NZ_CP011574\|CRISPRCasFinder	1588628-1588655	28	NZ_KM406416	Bifidobacterium breve strain JCM 7017 plasmid megaplasmid pMP7017, complete sequence	3293-3320	6	0.786
NZ_CP011574_2	2.2\|1588628\|28\|NZ_CP011574\|CRISPRCasFinder	1588628-1588655	28	NZ_MF788070	Raoultella ornithinolytica strain 23141 plasmid p23141-2, complete sequence	59889-59916	6	0.786
NZ_CP011574_2	2.2\|1588628\|28\|NZ_CP011574\|CRISPRCasFinder	1588628-1588655	28	NZ_CP014802	Salipiger profundus strain JLT2016 plasmid pTPRO6, complete sequence	169438-169465	7	0.75
NZ_CP011574_2	2.1\|1588571\|34\|NZ_CP011574\|CRISPRCasFinder	1588571-1588604	34	NZ_CP010865	Marinovum algicola DG 898 plasmid pMaD10, complete sequence	31936-31969	8	0.765

1. spacer 2.2|1588628|28|NZ_CP011574|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 1, identity: 0.964

tgtggcgcagctgccggttgttgataat	CRISPR spacer
tgtggcgcggctgccggttgttgataat	Protospacer
********.*******************

2. spacer 2.1|1588571|34|NZ_CP011574|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 2, identity: 0.941

ggctgcggcgctaccggctgatggtgtacgggcg	CRISPR spacer
ggttgcggagctaccggctgatggtgtacgggcg	Protospacer
**.***** *************************

3. spacer 1.1|1222741|27|NZ_CP011574|CRISPRCasFinder matches to MN850601 (Escherichia phage inny, complete genome) position: , mismatch: 4, identity: 0.852

cattcttgcacactctcaaccatctgc	CRISPR spacer
aattattgcacactctcaaacatctga	Protospacer
 *** ************** ******

4. spacer 1.1|1222741|27|NZ_CP011574|CRISPRCasFinder matches to MN850584 (Escherichia phage arall, complete genome) position: , mismatch: 4, identity: 0.852

cattcttgcacactctcaaccatctgc	CRISPR spacer
aattattgcacactctcaaacatctga	Protospacer
 *** ************** ******

5. spacer 1.1|1222741|27|NZ_CP011574|CRISPRCasFinder matches to FR775895 (Enterobacteria phage phi92, complete genome) position: , mismatch: 4, identity: 0.852

cattcttgcacactctcaaccatctgc	CRISPR spacer
aattattgcacactctcaaacatctga	Protospacer
 *** ************** ******

6. spacer 1.1|1222741|27|NZ_CP011574|CRISPRCasFinder matches to MN850632 (Escherichia phage alia, complete genome) position: , mismatch: 4, identity: 0.852

cattcttgcacactctcaaccatctgc	CRISPR spacer
aattattgcacactctcaaacatctga	Protospacer
 *** ************** ******

7. spacer 1.1|1222741|27|NZ_CP011574|CRISPRCasFinder matches to MN850573 (Escherichia phage muut, complete genome) position: , mismatch: 4, identity: 0.852

cattcttgcacactctcaaccatctgc	CRISPR spacer
aattattgcacactctcaaacatctga	Protospacer
 *** ************** ******

8. spacer 1.1|1222741|27|NZ_CP011574|CRISPRCasFinder matches to MG065689 (UNVERIFIED: Campylobacter phage A110a, complete genome) position: , mismatch: 5, identity: 0.815

cattcttgcacactctcaaccatctgc	CRISPR spacer
aattattgcacactctcaaacatccga	Protospacer
 *** ************** ****.*

9. spacer 1.1|1222741|27|NZ_CP011574|CRISPRCasFinder matches to MT932211 (Escherichia phage VEcB, complete genome) position: , mismatch: 5, identity: 0.815

cattcttgcacactctcaaccatctgc	CRISPR spacer
aattattgcacactctcaaacatccga	Protospacer
 *** ************** ****.*

10. spacer 1.1|1222741|27|NZ_CP011574|CRISPRCasFinder matches to KU522583 (Enterobacteria phage ECGD1, complete genome) position: , mismatch: 5, identity: 0.815

cattcttgcacactctcaaccatctgc	CRISPR spacer
aattattgcacactctcaaacatccga	Protospacer
 *** ************** ****.*

11. spacer 1.1|1222741|27|NZ_CP011574|CRISPRCasFinder matches to MF805809 (Escherichia phage vB_EcoM_PHB05, complete genome) position: , mismatch: 5, identity: 0.815

cattcttgcacactctcaaccatctgc	CRISPR spacer
aattattgcacactctcaaacatccga	Protospacer
 *** ************** ****.*

12. spacer 1.1|1222741|27|NZ_CP011574|CRISPRCasFinder matches to MH675927 (Escherichia phage vB_vPM_PD114, complete genome) position: , mismatch: 5, identity: 0.815

cattcttgcacactctcaaccatctgc	CRISPR spacer
aattattgcacactctcaaacatccga	Protospacer
 *** ************** ****.*

13. spacer 1.1|1222741|27|NZ_CP011574|CRISPRCasFinder matches to MG065645 (UNVERIFIED: Campylobacter phage A145, complete genome) position: , mismatch: 5, identity: 0.815

cattcttgcacactctcaaccatctgc	CRISPR spacer
aattattgcacactctcaaacatccga	Protospacer
 *** ************** ****.*

14. spacer 1.1|1222741|27|NZ_CP011574|CRISPRCasFinder matches to MG065639 (UNVERIFIED: Campylobacter phage A150, complete genome) position: , mismatch: 5, identity: 0.815

cattcttgcacactctcaaccatctgc	CRISPR spacer
aattattgcacactctcaaacatccga	Protospacer
 *** ************** ****.*

15. spacer 1.1|1222741|27|NZ_CP011574|CRISPRCasFinder matches to MG065656 (UNVERIFIED: Campylobacter phage C3, complete genome) position: , mismatch: 5, identity: 0.815

cattcttgcacactctcaaccatctgc	CRISPR spacer
aattattgcacactctcaaacatccga	Protospacer
 *** ************** ****.*

16. spacer 1.1|1222741|27|NZ_CP011574|CRISPRCasFinder matches to MH816848 (Escherichia phage vB_vPM_PD06, complete genome) position: , mismatch: 5, identity: 0.815

cattcttgcacactctcaaccatctgc	CRISPR spacer
aattattgcacactctcaaacatccga	Protospacer
 *** ************** ****.*

17. spacer 2.2|1588628|28|NZ_CP011574|CRISPRCasFinder matches to NZ_KM406416 (Bifidobacterium breve strain JCM 7017 plasmid megaplasmid pMP7017, complete sequence) position: , mismatch: 6, identity: 0.786

tgtggcgcagctgccggttgttgataat	CRISPR spacer
attggcgtagctggcggttgttgatgct	Protospacer
  *****.***** ***********. *

18. spacer 2.2|1588628|28|NZ_CP011574|CRISPRCasFinder matches to NZ_MF788070 (Raoultella ornithinolytica strain 23141 plasmid p23141-2, complete sequence) position: , mismatch: 6, identity: 0.786

tgtggcgcagctgccggttgttgataat	CRISPR spacer
caagccgctgctgcaggttgttgataat	Protospacer
.. * *** ***** *************

19. spacer 2.2|1588628|28|NZ_CP011574|CRISPRCasFinder matches to NZ_CP014802 (Salipiger profundus strain JLT2016 plasmid pTPRO6, complete sequence) position: , mismatch: 7, identity: 0.75

tgtggcgcagctgccggttgttgataat	CRISPR spacer
gctggcgcagctgccggtcggtgatgtc	Protospacer
  ****************.* ****. .

20. spacer 2.1|1588571|34|NZ_CP011574|CRISPRCasFinder matches to NZ_CP010865 (Marinovum algicola DG 898 plasmid pMaD10, complete sequence) position: , mismatch: 8, identity: 0.765

ggctgcggcgctaccggctgatggtgtacgggcg-	CRISPR spacer
cgctgcggcgctatccgctgatggtgc-tgctcga	Protospacer
 ************.* **********. .*  **

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

426091 : 431461

Escherichia_phage(50.0%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047042836.1\|426091_427465_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	3.9e-53	32.3
WP_032711785.1\|427512_428448_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	3.5e-138	93.0
WP_032711784.1\|428798_429134_-	HigA family addiction module antidote protein	A0A222YWD7	Escherichia_phage	2.4e-41	76.8
WP_042894575.1\|429191_429488_-	hypothetical protein	A0A222YWE2	Escherichia_phage	4.0e-40	77.9
WP_015705624.1\|429724_430150_-	universal stress protein UspF	A0A1W6JNV4	Morganella_phage	3.0e-28	50.7
WP_047739673.1\|430303_431461_-	porin OmpC	Q1MVN1	Enterobacteria_phage	5.7e-114	59.8

DBSCAN-SWA_2

5016066 : 5057339

uncultured_Caudovirales_phage(31.03%)

terminase,tail,integrase,holin,head

attL 5013949:5013963|attR 5033835:5033849

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5013949:5013963	attL	NA	NA	NA	NA
WP_042895686.1\|5016066_5018169_+	elongation factor G	E4ZFJ7	Streptococcus_phage	6.8e-65	27.8
WP_047740560.1\|5018207_5019638_-	exodeoxyribonuclease I	NA	NA	NA	NA
WP_047740562.1\|5019812_5020994_+\|integrase	site-specific integrase	A0A0M4QX09	Salmonella_phage	1.4e-200	83.7
WP_077255481.1\|5020974_5021166_-	AlpA family transcriptional regulator	A0A0M4RTZ2	Salmonella_phage	2.1e-18	73.8
WP_047740564.1\|5021183_5022584_-	DEAD/DEAH box helicase	Q3LZN8	Bacteriophage	2.7e-211	73.0
WP_047740566.1\|5022639_5023356_+	hypothetical protein	NA	NA	NA	NA
WP_047740568.1\|5023348_5023618_-	VRR-NUC domain-containing protein	B6SD64	Bacteriophage	8.7e-26	67.1
WP_047740571.1\|5023617_5023830_-	hypothetical protein	A0A2R2Z313	Escherichia_phage	6.6e-21	73.0
WP_047740573.1\|5023902_5024130_-	ANR family transcriptional regulator	NA	NA	NA	NA
WP_045391725.1\|5024140_5024344_-	hypothetical protein	NA	NA	NA	NA
WP_047740575.1\|5024349_5026413_-	DNA polymerase	Q775A3	Bordetella_phage	1.5e-271	67.2
WP_047740577.1\|5026435_5026966_+	hypothetical protein	NA	NA	NA	NA
WP_047740578.1\|5027022_5027571_-	DUF2815 family protein	Q775A5	Bordetella_phage	2.7e-66	64.8
WP_047740579.1\|5027587_5028817_-	DUF2800 domain-containing protein	B6SCX9	Bacteriophage	4.9e-132	56.4
WP_047740580.1\|5028820_5029711_-	hypothetical protein	Q3LZP9	Bacteriophage	1.8e-06	51.6
WP_047740583.1\|5030616_5031240_-	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	2.2e-35	49.1
WP_004141056.1\|5031360_5031573_+	helix-turn-helix transcriptional regulator	A0A0R6PHL1	Moraxella_phage	2.4e-07	43.8
WP_047740587.1\|5031576_5033745_+	replication protein	B6SCY1	Bacteriophage	2.9e-172	71.3
WP_047740589.1\|5034630_5035029_+	hypothetical protein	NA	NA	NA	NA
5033835:5033849	attR	NA	NA	NA	NA
WP_047036543.1\|5035040_5035265_+	hypothetical protein	NA	NA	NA	NA
WP_047740590.1\|5035268_5036891_+\|head,tail	bacteriophage head to tail connecting protein	A0A2H4J3N6	uncultured_Caudovirales_phage	1.3e-169	57.6
WP_047740592.1\|5036890_5037124_+	hypothetical protein	NA	NA	NA	NA
WP_047740595.1\|5037110_5037959_+	hypothetical protein	A0A2H4JEQ5	uncultured_Caudovirales_phage	1.0e-43	41.9
WP_047740597.1\|5038177_5039089_+	hypothetical protein	A0A2H4JC66	uncultured_Caudovirales_phage	5.4e-43	38.6
WP_047036559.1\|5039148_5039712_+	hypothetical protein	A0A2H4JID6	uncultured_Caudovirales_phage	2.0e-48	49.2
WP_047740599.1\|5039713_5041702_+	hypothetical protein	A0A2H4J6H2	uncultured_Caudovirales_phage	2.2e-182	48.1
WP_080962814.1\|5041701_5042154_+	GNAT family N-acetyltransferase	A0A2H4J9Z5	uncultured_Caudovirales_phage	2.0e-22	43.0
WP_047740604.1\|5042156_5042624_+	hypothetical protein	A0A2H4J679	uncultured_Caudovirales_phage	3.2e-07	46.9
WP_047740605.1\|5042624_5045339_+	transglycosylase SLT domain-containing protein	G9L6D3	Escherichia_phage	1.1e-282	58.1
WP_047740608.1\|5045338_5048233_+	hypothetical protein	G9L6D4	Escherichia_phage	0.0e+00	70.7
WP_047740610.1\|5048229_5048643_-	hypothetical protein	NA	NA	NA	NA
WP_047740611.1\|5048825_5049167_+	hypothetical protein	A0A2H4J7H0	uncultured_Caudovirales_phage	6.9e-20	50.0
WP_047740612.1\|5049163_5050774_+\|terminase	phage terminase large subunit	A0A2H4JCA3	uncultured_Caudovirales_phage	1.2e-226	70.8
WP_047740615.1\|5050792_5054569_+	hypothetical protein	A0A1V0E6N8	Klebsiella_phage	2.5e-78	26.1
WP_047740616.1\|5054647_5054872_+\|holin	holin	A0A0P0ZFW5	Escherichia_phage	1.2e-20	69.0
WP_047740617.1\|5054855_5055392_+	lysozyme	H6WRZ4	Salmonella_phage	3.5e-74	70.5
WP_047740619.1\|5055388_5055748_+	hypothetical protein	R9TPM9	Aeromonas_phage	1.2e-14	42.2
WP_020078367.1\|5056166_5057339_+	serine-type D-Ala-D-Ala carboxypeptidase DacD	B6DZZ7	Stx2-converting_phage	1.5e-186	81.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011574

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection