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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011584 Enterobacter hormaechei strain CAV1668 chromosome, complete genome 3 crisprs csa3,WYL,DEDDh,DinG,cas3,PD-DExK 0 2 9 0
NZ_CP011583 Enterobacter hormaechei strain CAV1668 plasmid pCAV1668-85, complete sequence 0 crisprs NA 0 0 2 0
NZ_CP011582 Enterobacter hormaechei strain CAV1668 plasmid pKPC_CAV1668, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP011584
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011584_1 1011432-1011708 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011584_2 1192370-1192458 Orphan I-F
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011584_3 1813112-1813273 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP011584_2 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder 1192399-1192429 31 JF974302 Vibrio phage VBpm10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces 21037-21067 6 0.806
NZ_CP011584_2 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder 1192399-1192429 31 MG592513 Vibrio phage 1.142.O._10N.261.49.E11, partial genome 26631-26661 7 0.774
NZ_CP011584_2 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder 1192399-1192429 31 MG592412 Vibrio phage 1.028.O._10N.286.45.B6, partial genome 26631-26661 7 0.774
NZ_CP011584_2 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder 1192399-1192429 31 MG592527 Vibrio phage 1.159.O._10N.261.46.F12, partial genome 26631-26661 7 0.774
NZ_CP011584_2 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder 1192399-1192429 31 MG592588 Vibrio phage 1.217.O._10N.261.45.A1, partial genome 26631-26661 7 0.774
NZ_CP011584_2 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder 1192399-1192429 31 MG592589 Vibrio phage 1.219.O._10N.261.45.E2, partial genome 26631-26661 7 0.774
NZ_CP011584_2 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder 1192399-1192429 31 MG592524 Vibrio phage 1.156.O._10N.261.45.A6, partial genome 26631-26661 7 0.774
NZ_CP011584_2 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder 1192399-1192429 31 MG592669 Vibrio phage 2.159.A._10N.261.46.F12, partial genome 26631-26661 7 0.774
NZ_CP011584_2 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder 1192399-1192429 31 MG592670 Vibrio phage 2.159.B._10N.261.46.F12, partial genome 26631-26661 7 0.774
NZ_CP011584_2 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder 1192399-1192429 31 MG592507 Vibrio phage 1.136.O._10N.261.45.E11, partial genome 26631-26661 7 0.774
NZ_CP011584_2 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder 1192399-1192429 31 NZ_CP043441 Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence 1534665-1534695 7 0.774
NZ_CP011584_2 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder 1192399-1192429 31 NC_015184 Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence 62534-62564 8 0.742
NZ_CP011584_2 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder 1192399-1192429 31 NZ_CP035511 Haematobacter massiliensis strain OT1 plasmid pOT1-1, complete sequence 283146-283176 8 0.742
NZ_CP011584_2 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder 1192399-1192429 31 NZ_CP054620 Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence 22328-22358 9 0.71
NZ_CP011584_2 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder 1192399-1192429 31 NC_013859 Azospirillum sp. B510 plasmid pAB510e, complete sequence 475099-475129 9 0.71
NZ_CP011584_2 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder 1192399-1192429 31 NZ_CP054621 Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence 714186-714216 10 0.677
NZ_CP011584_3 3.1|1813164|58|NZ_CP011584|CRISPRCasFinder 1813164-1813221 58 NZ_LN868946 Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence 15954-16011 12 0.793

1. spacer 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder matches to JF974302 (Vibrio phage VBpm10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces) position: , mismatch: 6, identity: 0.806

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
acggcgacactgaaacgcgccagagcattgt	Protospacer
**********.** ********* *..** *

2. spacer 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder matches to MG592513 (Vibrio phage 1.142.O._10N.261.49.E11, partial genome) position: , mismatch: 7, identity: 0.774

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
acggcgacactgaaacgcgccagagcatagt	Protospacer
**********.** ********* *..*  *

3. spacer 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder matches to MG592412 (Vibrio phage 1.028.O._10N.286.45.B6, partial genome) position: , mismatch: 7, identity: 0.774

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
acggcgacactgaaacgcgccagagcatagt	Protospacer
**********.** ********* *..*  *

4. spacer 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder matches to MG592527 (Vibrio phage 1.159.O._10N.261.46.F12, partial genome) position: , mismatch: 7, identity: 0.774

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
acggcgacactgaaacgcgccagagcatagt	Protospacer
**********.** ********* *..*  *

5. spacer 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder matches to MG592588 (Vibrio phage 1.217.O._10N.261.45.A1, partial genome) position: , mismatch: 7, identity: 0.774

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
acggcgacactgaaacgcgccagagcatagt	Protospacer
**********.** ********* *..*  *

6. spacer 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder matches to MG592589 (Vibrio phage 1.219.O._10N.261.45.E2, partial genome) position: , mismatch: 7, identity: 0.774

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
acggcgacactgaaacgcgccagagcatagt	Protospacer
**********.** ********* *..*  *

7. spacer 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder matches to MG592524 (Vibrio phage 1.156.O._10N.261.45.A6, partial genome) position: , mismatch: 7, identity: 0.774

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
acggcgacactgaaacgcgccagagcatagt	Protospacer
**********.** ********* *..*  *

8. spacer 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder matches to MG592669 (Vibrio phage 2.159.A._10N.261.46.F12, partial genome) position: , mismatch: 7, identity: 0.774

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
acggcgacactgaaacgcgccagagcatagt	Protospacer
**********.** ********* *..*  *

9. spacer 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder matches to MG592670 (Vibrio phage 2.159.B._10N.261.46.F12, partial genome) position: , mismatch: 7, identity: 0.774

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
acggcgacactgaaacgcgccagagcatagt	Protospacer
**********.** ********* *..*  *

10. spacer 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder matches to MG592507 (Vibrio phage 1.136.O._10N.261.45.E11, partial genome) position: , mismatch: 7, identity: 0.774

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
acggcgacactgaaacgcgccagagcatagt	Protospacer
**********.** ********* *..*  *

11. spacer 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

acggcgacaccgacacgcgccag----cgtgtttt	CRISPR spacer
acggcgagaccgtcacgcgccaggtgccggg----	Protospacer
******* **** **********    ** *    

12. spacer 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder matches to NC_015184 (Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence) position: , mismatch: 8, identity: 0.742

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
gcggcgacaccgacactcgcccgcgatctca	Protospacer
.*************** **** ***  .*. 

13. spacer 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder matches to NZ_CP035511 (Haematobacter massiliensis strain OT1 plasmid pOT1-1, complete sequence) position: , mismatch: 8, identity: 0.742

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
tcggcgatgccgacacgcgccagcagttcta	Protospacer
 ******..***************.  *.* 

14. spacer 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.71

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
ccggcgacatcgacacgcggcagcccaggat	Protospacer
 ********.********* **** ..   *

15. spacer 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 9, identity: 0.71

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
ccggcgacaccgacacccggcagcccaggat	Protospacer
 *************** ** **** ..   *

16. spacer 2.1|1192399|31|NZ_CP011584|CRISPRCasFinder matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 10, identity: 0.677

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
ggggcgactccgacccgcgccagcgccgcag	Protospacer
. ****** ***** **********.  .  

17. spacer 3.1|1813164|58|NZ_CP011584|CRISPRCasFinder matches to NZ_LN868946 (Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence) position: , mismatch: 12, identity: 0.793

atatgtagaacatgtaggccgggtaaggcgtagccgccacccggctttttatcgtttc	CRISPR spacer
tcaagcagacgatgtaggccgggtaaggcgtagccgccacccggctttttatttgcga	Protospacer
 .* *.***  *****************************************.  .  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 207367 : 213487 9 Enterobacteria_phage(75.0%) integrase,transposase attL 202319:202332|attR 214318:214331
DBSCAN-SWA_2 1434260 : 1492802 77 Enterobacterial_phage(33.33%) head,holin,tRNA,portal,capsid,tail,integrase,protease,terminase attL 1437019:1437034|attR 1472671:1472686
DBSCAN-SWA_3 2364064 : 2459021 103 Salmonella_phage(12.77%) coat,plate,holin,tRNA,portal,tail,protease,integrase,terminase attL 2415400:2415415|attR 2460238:2460253
DBSCAN-SWA_4 2558908 : 2569721 9 Bodo_saltans_virus(12.5%) NA NA
DBSCAN-SWA_5 3033468 : 3057958 30 Enterobacteria_phage(40.0%) integrase,transposase attL 3051018:3051031|attR 3059067:3059080
DBSCAN-SWA_6 3093889 : 3136596 40 Staphylococcus_phage(14.29%) tRNA,integrase,protease,transposase attL 3099235:3099254|attR 3139486:3139505
DBSCAN-SWA_7 3515008 : 3551516 25 Stx2-converting_phage(20.0%) integrase,transposase attL 3528009:3528023|attR 3555443:3555457
DBSCAN-SWA_8 3609454 : 3651834 49 Erwinia_phage(38.1%) lysis,head,plate,tRNA,portal,capsid,tail,integrase,terminase attL 3602418:3602437|attR 3657291:3657310
DBSCAN-SWA_9 4776312 : 4820372 55 Enterobacteria_phage(28.26%) tRNA,portal,tail,integrase,protease,terminase attL 4767899:4767914|attR 4825815:4825830
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP011583
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 57509 56 Enterobacteria_phage(21.05%) transposase,integrase attL 14329:14344|attR 59068:59083
DBSCAN-SWA_2 77744 : 83721 5 Anoxybacillus_phage(25.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage