CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP011598	Phytobacter ursingii strain CAV1151 plasmid pKPC_CAV1151, complete sequence	0 crisprs	NA	0	0	0
NZ_CP011601	Phytobacter ursingii strain CAV1151 plasmid pCAV1151-296, complete sequence	0 crisprs	csa3	0	0	3
NZ_CP011600	Phytobacter ursingii strain CAV1151 plasmid pCAV1151-215, complete sequence	0 crisprs	csa3	0	0	2
NZ_CP011599	Phytobacter ursingii strain CAV1151 plasmid pCAV1151-83, complete sequence	0 crisprs	NA	0	0	1
NZ_CP011602	Phytobacter ursingii strain CAV1151 chromosome, complete genome	8 crisprs	DEDDh,cas3,csa3,DinG,WYL,RT	1	7	10

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011602_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011602_1

238417-238811

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCGAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCGAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCGAGCGGGGATAAACCG	CRT

6 spacers

The CRISPR arrays of NZ_CP011602_1

>merge|NZ_CP011602|1|238417-238811|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCGAGCGGGGATAAACCGCCCAGGGTATCGCGGGTAATCAAGCCGGTTTCGTGTTCCCCGCGCGAGCGGGGATAAACCGAGCGAATTTACGTTTTTCAGGGTGGCAGAAAAGTGTTCCCCGCGCGAGCGGGGATAAACCGGAGTGATGACACCCGTACAGGGAGAAGTCGAGGTGTTCCCCGCGCGAGCGGGGATAAACCGCTTCTATGCCGGAAAGGTCACGCTCAACAATGGTGTTCCCCGCGCGAGCGGGGATAAACCGGTGCCGCTTCCCTGGGGAAAACCAGACTGATTGTGTTCCCCGCGCGAGCGGGGATAAACCGTGTGCGAGTTGCCAGGCTGATGCAGAAAAGCGGTGTTCCCCACGCCAGTGGGGATAAATAA

>NZ_CP011602|1|1|238417-238750|PILER-CR
GTGTTCCCCGCGCGAGCGGGGATAAACCG	CCCAGGGTATCGCGGGTAATCAAGCCGGTTTC
GTGTTCCCCGCGCGAGCGGGGATAAACCG	AGCGAATTTACGTTTTTCAGGGTGGCAGAAAA
GTGTTCCCCGCGCGAGCGGGGATAAACCG	GAGTGATGACACCCGTACAGGGAGAAGTCGAG
GTGTTCCCCGCGCGAGCGGGGATAAACCG	CTTCTATGCCGGAAAGGTCACGCTCAACAATG
GTGTTCCCCGCGCGAGCGGGGATAAACCG	GTGCCGCTTCCCTGGGGAAAACCAGACTGATT
GTGTTCCCCGCGCGAGCGGGGATAAACCG

>NZ_CP011602|1|1|238417-238811|CRISPRCasFinder
GTGTTCCCCGCGCGAGCGGGGATAAACCG	CCCAGGGTATCGCGGGTAATCAAGCCGGTTTC
GTGTTCCCCGCGCGAGCGGGGATAAACCG	AGCGAATTTACGTTTTTCAGGGTGGCAGAAAA
GTGTTCCCCGCGCGAGCGGGGATAAACCG	GAGTGATGACACCCGTACAGGGAGAAGTCGAG
GTGTTCCCCGCGCGAGCGGGGATAAACCG	CTTCTATGCCGGAAAGGTCACGCTCAACAATG
GTGTTCCCCGCGCGAGCGGGGATAAACCG	GTGCCGCTTCCCTGGGGAAAACCAGACTGATT
GTGTTCCCCGCGCGAGCGGGGATAAACCG	TGTGCGAGTTGCCAGGCTGATGCAGAAAAGCG
GTGTTCCCCACGCCAGTGGGGATAAATAA

>NZ_CP011602|1|1|238417-238811|CRT
GTGTTCCCCGCGCGAGCGGGGATAAACCG	CCCAGGGTATCGCGGGTAATCAAGCCGGTTTC
GTGTTCCCCGCGCGAGCGGGGATAAACCG	AGCGAATTTACGTTTTTCAGGGTGGCAGAAAA
GTGTTCCCCGCGCGAGCGGGGATAAACCG	GAGTGATGACACCCGTACAGGGAGAAGTCGAG
GTGTTCCCCGCGCGAGCGGGGATAAACCG	CTTCTATGCCGGAAAGGTCACGCTCAACAATG
GTGTTCCCCGCGCGAGCGGGGATAAACCG	GTGCCGCTTCCCTGGGGAAAACCAGACTGATT
GTGTTCCCCGCGCGAGCGGGGATAAACCG	TGTGCGAGTTGCCAGGCTGATGCAGAAAAGCG
GTGTTCCCCACGCCAGTGGGGATAAATAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011602.1\|WP_038918153.1\|244203_244662_+\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|224854
NZ_CP011602.1\|WP_039077698.1\|237480_238152_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP011602.1\|WP_047369067.1\|235952_237062_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187547
NZ_CP011602.1\|WP_047369074.1\|248305_249721_+\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|182606
NZ_CP011602.1\|WP_047369060.1\|222922_224062_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|376844
NZ_CP011602.1\|WP_047369075.1\|249730_250639_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP011602.1\|WP_047369073.1\|247026_248070_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP011602.1\|WP_047369068.1\|238866_239229_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP011602.1\|WP_047369061.1\|224095_226846_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP011602.1\|WP_047369066.1\|232872_234510_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP011602.1\|WP_052958808.1\|245188_245467_+\|DUF5339-domain-containing-protein	unknown	unknown	gnl\|CDD\|375095
NZ_CP011602.1\|WP_047369070.1\|243265_244000_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP011602.1\|WP_052958807.1\|230665_231448_+\|DUF4225-domain-containing-protein	unknown	unknown	gnl\|CDD\|372865
NZ_CP011602.1\|WP_047369062.1\|226902_228201_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP011602.1\|WP_039077695.1\|241481_243194_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP011602.1\|WP_047369069.1\|239673_241482_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP011602.1\|WP_047369063.1\|228253_230494_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP011602.1\|WP_139153688.1\|245540_246698_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011602.1\|WP_039077700.1\|234588_235887_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP011602.1\|WP_047369065.1\|231839_232649_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569

Protein	Function_ID	Function_description	E-value
NZ_CP011602.1\|WP_038918153.1\|244203_244662_+\|IS200/IS605-family-transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.529e-47
NZ_CP011602.1\|WP_039077698.1\|237480_238152_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.9354e-148
NZ_CP011602.1\|WP_047369067.1\|235952_237062_-\|SDR-family-oxidoreductase	gnl\|CDD\|187547	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs. SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	7.12339e-63
NZ_CP011602.1\|WP_047369074.1\|248305_249721_+\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|182606	PRK10637, cysG, siroheme synthase CysG.	0
NZ_CP011602.1\|WP_047369060.1\|222922_224062_+\|glycerate-kinase	gnl\|CDD\|376844	pfam02595, Gly_kinase, Glycerate kinase family. This is family of Glycerate kinases.	0
NZ_CP011602.1\|WP_047369075.1\|249730_250639_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP011602.1\|WP_047369073.1\|247026_248070_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP011602.1\|WP_047369068.1\|238866_239229_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	5.44076e-58
NZ_CP011602.1\|WP_047369061.1\|224095_226846_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP011602.1\|WP_047369066.1\|232872_234510_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP011602.1\|WP_052958808.1\|245188_245467_+\|DUF5339-domain-containing-protein	gnl\|CDD\|375095	pfam17274, DUF5339, Family of unknown function (DUF5339). This is a family of unknown function that can be found mostly in Proteobacteria. Some of the family members are predicted to contain a coiled coil region.	3.58816e-13
NZ_CP011602.1\|WP_047369070.1\|243265_244000_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	3.91575e-139
NZ_CP011602.1\|WP_052958807.1\|230665_231448_+\|DUF4225-domain-containing-protein	gnl\|CDD\|372865	pfam13988, DUF4225, Protein of unknown function (DUF4225). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 182 and 282 amino acids in length.	7.44571e-33
NZ_CP011602.1\|WP_047369062.1\|226902_228201_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP011602.1\|WP_039077695.1\|241481_243194_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP011602.1\|WP_047369069.1\|239673_241482_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP011602.1\|WP_047369063.1\|228253_230494_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP011602.1\|WP_039077700.1\|234588_235887_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP011602.1\|WP_047369065.1\|231839_232649_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	7.19007e-159

>NZ_CP011602.1|WP_039077698.1|237480_238152_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLEDREVSLYSILAKTKESDKWGAASSEDLLAIIERQGWTARHVVITGGEPCIHDLIPLTHLLEKQGFSCQIETSGTHEVRTSHATWVTVSPKVNMRGGYDILQQALERADEIKHPVGRTRDIEALDELLTQLTDDKHRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP011602.1|WP_047369067.1|235952_237062_-|SDR-family-oxidoreductase
MKTLLITGVTGFLGGAVFEKILNDDSQINYLLLVRATDSQAGVERVKENMRKFNISESILSRLTCEHIIIGDLGTPEQFLDDPRLDSVTHVLNCAAVASFGNNPLIWKVNVEGTLAFAGRMAKVQGLQRFLHVGTAMSCAPEADSLVFESQEFKENAEHLVEYTHSKSTIEHLMRKTYPNLPLVIARPSIVVGHTHYGCQPSSSIFWVFSMALMLQKFMCSLEDRIDVVPVDYCADALIMMLKSDIPAGEVIHISAGEENSVKFADIDAAMACALETVPVKDVYTQVSYETLVKMRRELKNIFGPCNERLMLKAMRLYGAFAMLNVRFSNDKLIELGMPKPPRFTDYIAQCVQTTRGLSIPQQMAVDFK
>NZ_CP011602.1|WP_039077700.1|234588_235887_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGLAAAPSGASTGSREALELRDGDKSRFMGKGVLKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLATAKAAAASKGLPLYAHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKSLKEAVRMGSEVFHNLAKVLKSKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEDLTKQYPIVSIEDGLDESDWAGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIVNSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEQAPYNGRKEIKGQA
>NZ_CP011602.1|WP_047369066.1|232872_234510_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTMMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMTRRNNFTTGRIYSEVLRKERRGDYLGATVQVIPHITNAIKERIIEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEVGRERTLYMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLAEWEQVIYQQANPVDEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKGLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEYARNVAGMEGANSTEFVPDCKYPVVALITEWRDEEGKIEVRSEKSDLGGTMRLGAQQCQLGDDSLVRQLYGEPTIVERHRHRYEVNNLLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEYQKRQAK
>NZ_CP011602.1|WP_047369065.1|231839_232649_+|nucleoside-triphosphate-pyrophosphohydrolase
MTITINKTPIDRLLGIMQRLRDPEKGCPWDKEQTFATIAPYTLEETYEVLDAISREDFDDLRGELGDLLFQVVFYAQMAQEQKLFNFDDICAAISDKLERRHPHIFGDAHAENSSEVLARWEEIKSAERAEKSQHSALDDIPHSLPALMRAHKIQKRCSTVGFDWTSLGPVLDKVYEEIDEVMDEAKQAVVDEAKLEEEMGDLLFATVNLSRHLGVKAEVALQKANLKFERRFREVERIVAARGLEMSGIDLEAMEEVWQQVKRQETDI
>NZ_CP011602.1|WP_052958807.1|230665_231448_+|DUF4225-domain-containing-protein
MFYGSKKEFEQQKNAFLDAAHYLWMTDPFYFKQSGFFSRIDSVVRQVETEIGMNCLSWAGGEEILKYKTAVLSYQKSVILNNKIYSKWMAEQECKNKRSAELYKLYNKIIGFLAGIGQVATGVGICVSTASSGMIPGASMIMQGLNNTYENGYYLVVYEEVSGPLRDAYHYSANKTGYDEKKADIAYGTIDLALSGYGLFRKIPTPREKSWNLFGITIKQTDYVRSVREMTQPVFMLEIISDEFTVLSLMPAFNESDLRH
>NZ_CP011602.1|WP_047369063.1|228253_230494_+|GTP-diphosphokinase
MVAVRSAHLNKAGEFDPKKWIASLGISSQPSCERLAETWEYCLRQTQGHPHADLLLWRGVEMVEILSMLSMDLDTLRAALLFPLADADVVSEDTLRESVGKSIVELIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKIAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRIVREHYIEEFVGHLRSEMKEEGVKAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTRQMHEDAELGVAAHWKYKEGATAGTNSGGRGYEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKISGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNVLAGRQILDDELAHLGISLKEAEKQLLPRYNFNDLEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDDIVGFITQGRGISIHRADCDQLEELRTHAPERIVDAVWGESYSAGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKEQLATIDMNIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>NZ_CP011602.1|WP_047369062.1|226902_228201_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVTVNDLDPFGQGVARYNGKALFVKDLLPQETAEITLIEDKRQYARGEVKRRLNDSPERVAPVCPHFGVCGGCQQQHASVALQQRSKSAALARLMKQEVEEVIDASPWAYRRRARLSLNWQPKTQRLEMGFHKANASDIINVSRCPVLVPRLEALLAPLHTCLASLKAVRHLGHVELVLADNGPLMVLRHTAPLSAADREKLERFSHSEGLALFLAPESEILEHVTGESPWYNSDGLRLTFSPRDFIQVNDGVNQQMVARALEWLDVQPDERVLDLFCGMGNFTLPLAKRAASVVGVEGVAELVEKGRENARQNGLQSVTFFHENLEEDVTKQPWARQGFDKILLDPARAGAAGVMQHVVKLAPGKVVYVSCNPATLARDSEALVNAGYQIKRLAMLDMFPHTGHLESMVLFEHK
>NZ_CP011602.1|WP_047369061.1|224095_226846_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGVLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYSMTLQDREAIGQLISVLHRRHSEIVRGISIYDEQNHLFVTSNFQLDPGELRLADGSALPRRLSVTRRGDLMILRTPIISEGYSPDESALSDAKPAGNMLGYVALELDLKSVRLQQYKEIFISSLMILFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQSTSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHMLTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSAHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTENGNIDIHVERRSISNNKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQRLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNAISEGPVTGCLAGKRLAYIEPNAAAAQSTLDVLSATPLEVVYSPSFSGLPPDHYDILLFSVPVTFHEPLTMQHEKLAAAAAMTDHLLLALPCHAQINAEALKQDGAAACLLKPLTSTRLLPALTEYCCSTRQMDSVDMSKLPMTVMAVDDNPANLKLIGALLEDQVQRIELCDSGPQAVEKARQMQFDLILMDIQMPGMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEDKLYNLLLRYKPGALASNVVAAPEPAEPGETEDVTLDWQLALRQAAGKPDLAREMLQMLVAFLPEIRNKVEEQLVGEAPEGLLDLIHKLHGSCGYSGVPRLKKLCQLIEHQLRSGMPAEELEPEFLELLDEMDNVTRDARKMMG
>NZ_CP011602.1|WP_047369060.1|222922_224062_+|glycerate-kinase
MKIVIAPDSYKESLSALDVATAIESGFREIFPTAEYVKLPVADGGEGTVEAMVAATCGRIVSVAVKGPLGEPVDGFYGLSGDEKCAFIEMAAASGLELVPAAQRDPLVTTSWGTGELIRHALDAGVKHIIIGIGGSATNDGGAGMVQALGAKLLDNEDQQIGPGGASLETLARIDIRELDKRLAECRIEVACDVTNPLTGKDGASAIFGPQKGATPKMIARLDQALGHYAKIIARDLDQDVLNLAGGGAAGGMGAALYAFCGAELRQGIEIVTDALALDKHVADADLVITGEGRIDSQTVHGKVPVGVAKVAKRYNVPVIGIAGSLTADVGVVHDHGIDAVFSVIYKICTLEDALANAGENVRMTARNVAAVLKVGQGK
>NZ_CP011602.1|WP_047369068.1|238866_239229_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLFKDFMFEAAHRLPHVPAGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFAELKAAFKPTYDRLDHYYLNDIPGLENPTSEVLAKWIWDQIKPIVPLLSAVMIKETCTAGCIYRGE
>NZ_CP011602.1|WP_047369069.1|239673_241482_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVLNQQPGAAVATATPAATEAPTITLLSASQTGNARRVAEALRDDLLAAKLNVKLVSAGDYKFKQIANEKLLIVVASTQGEGEPPEEAVALHKFLFSKKAPKLNGTAFAVLGLGDTSYEFFCQAGKDFDSKLAELGAERLLDRVDADVEFQAAAAEWRARVVEVLKARVPKETPAQAAVTATGAVNEVFSSPYTKEEPLTATLSVNQKITGRDSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELIELLWLKGDEPVSVDGKTLPLSEALQWHFELTVNTGNIVENYATLTRSESLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAGALTGLLRPLTPRLYSIASSQAEVETEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLRQQGAELWRWINDGAHIYVCGDANRMAKDVEQALLDVIAEFGAMDAEAADEYLSELRVERRYQRDVY
>NZ_CP011602.1|WP_039077695.1|241481_243194_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAAENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESELHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAVAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPVEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGEFRITANQNLIIAGVPDSQKAKIEKIARQSGLMDAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDKVEEVMAKHGLSDEHIVTRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMFKENITEPEIIASLDELVGRWAKEREAGEGFGDFTIRAGIIRPVLDPARDLWD
>NZ_CP011602.1|WP_047369070.1|243265_244000_+|phosphoadenosine-phosphosulfate-reductase
MSVLDLSALNALSKDDRTQALAEANAQLEAQTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQVRPNIPVILTDTGYLFPETYRFIDELTDKLGLNLQIYRAPQSPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSSSRANLPVLDIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEDTRFFGLKRECGLHEG
>NZ_CP011602.1|WP_038918153.1|244203_244662_+|IS200/IS605-family-transposase
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRLAIGSILRKLCEWKNVRILEAECCADHIHMLVEIPPKMSVSGFMGYLKGKSSLMLYEQFGDLKFKYRNREFWCRGYYVDTVGKNTAKIQEYIKHQLEEDKMGEQLSIPYPGSPFTGRK
>NZ_CP011602.1|WP_052958808.1|245188_245467_+|DUF5339-domain-containing-protein
MMKKITLAALLMTTGFSAYAETETCKQYFAEVDSFIELASKQEGTKAQADMLKTQHAESKKQMEALTAEQQDAGCKQGLAAMQQLKAAMNPK
>NZ_CP011602.1|WP_139153688.1|245540_246698_-|hypothetical-protein
MFKKILLILTVMIWPTLSFAFTINCYGGSASTVTLPHSASLDKITVGLSNDTTHYRKLYTYNYFHFGKANSQCQVTESGAGTTLLWVAFVRTSTTPHIHDGNVIFPTSINGIGISFNEMTSGGNKALNTITTPTVLGPWSLTNTLAQATPEFNLKITLWKIPGKLGTGSLNFSDIYVDLGLQAKASDSYASRMNMSSSAALDTWSVMHAKLSGTLDINPGTCDIENKTVLMGEHFGDFPSRWKDATFTVNCPASWGYGMTATLNNSNVISSRTANTPHMGLALSVLPRAGIVSAIPGTIALTPGGATGYGIQLVWGDANTLTSSTGIPSDTVIFDAPNVVSTQTFTPGVTPAPVQVKLAARYVPTGETKSPGLANSAIEILANYN
>NZ_CP011602.1|WP_047369073.1|247026_248070_-|aminopeptidase
MLSALRHRTAALALGVCFIFSAQARAPHTGEFASNQARHIATYFPGRMTGTPAEMLAADYLRQQFSQMGYQSDIRKFNSRYSWTTHDNQQNWQNVTGSTVIAAHEGTHPQQIIIMAHLDTYAPRSDADTNHNLGGLTLQGIDDNAAGVGVMLELAEQLKSVPTEYTIRFMATSGEEEGSLGAENVLSRMSEREKKHTLLVINLDNLIVGDNLYFNSGKKTPASVRKLTRDRALAIARNLGIKATTNPGLNPAFPQGTSCCNDACVFDKAGIPVLSVEATNWSLGKKDGYQQRAKSKAFPDGVSWHDIKLDNIQHIDQALPGRIDRRSRDVVRIMLPLVKELAKAEKK
>NZ_CP011602.1|WP_047369074.1|248305_249721_+|uroporphyrinogen-III-C-methyltransferase
MDYLPLFADVKDRPVLVVGGGDVAARKIAFLRRAGARVMVVTKHLEPSLQQLVDEQKIHLLADVFEEAQLDNVFLVIAATDDATVNRRVFDAANARHRLVNVVDDQPLCSFIFPSIVDRSPLLVAISSGGNAPVLARLLREKIEALLPANLGRMAEVAGRWRTRIKAFRKTTDERRRFWESAFRGRFASLMAAGKEQAAEQVLADELAKPGSSTGEIILVGAGPGDAGLLTLRGLQVIQQADVVFYDHLVTDGVLELVRRDAELISVGKRAGSHLVAQHDTNRLLVEAAQAGKTVVRLKGGDPFIFGRGGEELQAAAEAGIPFQVVPGVTAASGATAYAGIPLTHRDYAQSATFVTGHYKADSAPFDWRQLAQSRQTLAIYMGTMKAAEIGEQLIAHGREANTPVAVISRGTRADQQVRTGTLQQLEELAKDAPMPALLVVGEVVQLHRELAWFQHATDSEAFDASVVNLA
>NZ_CP011602.1|WP_047369075.1|249730_250639_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMMYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTELDIWQYIYLENIEIVPLYLAAERPVLERDGMLMMIDDDRIDLQPGEVIEQRMVRFRTLGCWPLTGAVESEAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF

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Crispr_ID: NZ_CP011602_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011602_2

1463342-1463471

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011602_2

>merge|NZ_CP011602|2|1463342-1463471|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCACTAAAGAGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP011602|2|2|1463342-1463471|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCACTAAAGAGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011602.1\|WP_047370025.1\|1468984_1470184_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP011602.1\|WP_047370012.1\|1452773_1454045_+\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|236804
NZ_CP011602.1\|WP_047370016.1\|1457414_1458827_-\|pyruvate-kinase-PykF	unknown	unknown	gnl\|CDD\|181699
NZ_CP011602.1\|WP_007374746.1\|1456869_1457106_-\|major-outer-membrane-lipoprotein	unknown	unknown	gnl\|CDD\|185294
NZ_CP011602.1\|WP_047370024.1\|1467534_1468683_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP011602.1\|WP_090086635.1\|1472548_1472638_+\|YnhF-family-membrane-protein	unknown	unknown	unknown
NZ_CP011602.1\|WP_047370022.1\|1466022_1466631_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP011602.1\|WP_047370021.1\|1464157_1465531_-\|MdtK-family-multidrug-efflux-MATE-transporter	unknown	unknown	gnl\|CDD\|234981
NZ_CP011602.1\|WP_047370027.1\|1471224_1472250_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP011602.1\|WP_047370020.1\|1463756_1464041_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011602.1\|WP_047370019.1\|1461586_1463092_-\|DUF2235-domain-containing-protein	unknown	unknown	gnl\|CDD\|370774
NZ_CP011602.1\|WP_047370023.1\|1466758_1467400_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP011602.1\|WP_047370018.1\|1460422_1461478_+\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176186
NZ_CP011602.1\|WP_047370015.1\|1455787_1456804_+\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|182294
NZ_CP011602.1\|WP_047370017.1\|1459323_1460115_-\|inositol-monophosphatase-family-protein	unknown	unknown	gnl\|CDD\|238819
NZ_CP011602.1\|WP_047370013.1\|1454041_1455262_+\|cysteine-desulfurase-SufS	unknown	unknown	gnl\|CDD\|181766
NZ_CP011602.1\|WP_047370011.1\|1452052_1452799_+\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|181965
NZ_CP011602.1\|WP_047370014.1\|1455275_1455692_+\|cysteine-desulfuration-protein-SufE	unknown	unknown	gnl\|CDD\|181767
NZ_CP011602.1\|WP_047370028.1\|1472804_1473974_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP011602.1\|WP_047370026.1\|1470296_1471208_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948

Protein	Function_ID	Function_description	E-value
NZ_CP011602.1\|WP_047370025.1\|1468984_1470184_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP011602.1\|WP_047370012.1\|1452773_1454045_+\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|236804	PRK10948, PRK10948, Fe-S cluster assembly protein SufD.	0
NZ_CP011602.1\|WP_047370016.1\|1457414_1458827_-\|pyruvate-kinase-PykF	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP011602.1\|WP_007374746.1\|1456869_1457106_-\|major-outer-membrane-lipoprotein	gnl\|CDD\|185294	PRK15396, PRK15396, major outer membrane lipoprotein.	3.07419e-39
NZ_CP011602.1\|WP_047370024.1\|1467534_1468683_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP011602.1\|WP_047370017.1\|1459323_1460115_-\|inositol-monophosphatase-family-protein	gnl\|CDD\|238819	cd01641, Bacterial_IMPase_like_1, Predominantly bacterial family of Mg++ dependend phosphatases, related to inositol monophosphatases. These enzymes may dephosphorylate fructose-1,6-bisphosphate, inositol monophospate, 3'-phosphoadenosine-5'-phosphate, or similar substrates.	2.65593e-102
NZ_CP011602.1\|WP_047370027.1\|1471224_1472250_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP011602.1\|WP_047370022.1\|1466022_1466631_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.37856e-17
NZ_CP011602.1\|WP_047370019.1\|1461586_1463092_-\|DUF2235-domain-containing-protein	gnl\|CDD\|370774	pfam09994, DUF2235, Uncharacterized alpha/beta hydrolase domain (DUF2235). This domain, found in various hypothetical bacterial proteins, has no known function.	1.17209e-98
NZ_CP011602.1\|WP_047370023.1\|1466758_1467400_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	3.19595e-122
NZ_CP011602.1\|WP_047370018.1\|1460422_1461478_+\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NZ_CP011602.1\|WP_047370015.1\|1455787_1456804_+\|L,D-transpeptidase-family-protein	gnl\|CDD\|182294	PRK10190, PRK10190, L,D-transpeptidase; Provisional.	2.5585e-84
NZ_CP011602.1\|WP_047370021.1\|1464157_1465531_-\|MdtK-family-multidrug-efflux-MATE-transporter	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP011602.1\|WP_047370013.1\|1454041_1455262_+\|cysteine-desulfurase-SufS	gnl\|CDD\|181766	PRK09295, PRK09295, cysteine desulfurase SufS.	0
NZ_CP011602.1\|WP_047370011.1\|1452052_1452799_+\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|181965	PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.	0
NZ_CP011602.1\|WP_047370014.1\|1455275_1455692_+\|cysteine-desulfuration-protein-SufE	gnl\|CDD\|181767	PRK09296, PRK09296, cysteine desulfuration protein SufE.	4.24134e-104
NZ_CP011602.1\|WP_047370028.1\|1472804_1473974_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.53345e-97
NZ_CP011602.1\|WP_047370026.1\|1470296_1471208_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0

>NZ_CP011602.1|WP_047370019.1|1461586_1463092_-|DUF2235-domain-containing-protein
MHLIVFCDGTWNTPDQMDNGIPAPTNVVKLRNALAVTPEQQVYYHPGVGTDGGWWNRVVGGGTGEGLDNNIMSAYNWLARHYQPNAAIWLFGFSRGAYTVRSLSGMIARCGLLNPAGLSERDIWSAVSDIFAHYRDPTTKVPAWPVYEGGVDLPIHFIGVWDTVGALGVPDDMVILNLIDNPDNYRFHNTALSHNILHARHAMAIDEKRQSFIPTLWTDIPADADVIQLWSPGVHSDIGGGYSRCGLADGALDWMIKEAQALGLQFRDDVLQQIKPDAFDQLHDSVTGVFASLKTRPRNVPCFELPASPFHPSAMTRHTCPSLLQGIYWPGMILKIPGDKATLKVYAREHWNATGIYLEGGVTYSLRASGEWKDSSIICGPQGNNDGKFQPGEAVQMAASLLGQAEVLYQKLTHNHQADFWYTRREEDAPWFALMGMVANDVLPETPPKNATNFLPHEVFRIGSGCTFTPQKSGYLYAFANDAWQMYANNNGSVELKVTRT
>NZ_CP011602.1|WP_047370018.1|1460422_1461478_+|NAD(P)-dependent-alcohol-dehydrogenase
MTIKVLGYAAQSSKAPLSPYYFERRDPRADDVVIDILYCGVCHSDLHQARNDWGFSQYPLVPGHEIVGRVTRVGSSVSKFKAGDLVGIGCMVDSCRECSSCKQGLEQYCEEGNIQTYNGIDRHDHMPTYGGYSRTIICSEDFVLRIPENLDVQAVAPLLCAGITTWSPLRRWGVKAGSKVAVIGLGGLGHMALKLAHAMGAEVTLFTRSPGKEADARQLGAQHVVLSTDPQQMEAVKGQFELVIDTVPYAHDINPYMPTLTLDGTLVFVGLLGDIEPAVSTLPLILGRRSVSGSCIGGIAETQEMLDFCGQHNITADSEVIRMDQINDAFDRLLKSDVKYRFVIDMQTLSD
>NZ_CP011602.1|WP_047370017.1|1459323_1460115_-|inositol-monophosphatase-family-protein
MAHAVPDIAFLHELADAADKQTLPRFRSQLNLHVDTKPKEGYRFDPVTDADREAERAIRAIIDTRYPDHSIMGEEFGITGSGPLQWVLDPVDGTRPFLCGIPVWGTLIGLTVEGRGHLGMMSQPFTGERFWADGRQSWRSGPQGTAPLNTRKGLSLEGAILHITSPEPIARFPEINFAALDDAALMTRYGGECYAMAMLAAGQIDLCLEYSLQPYDIVALIPIIEQAGGIVTTLNGDRPEAGGHILAAGCPEVHAQALQRLHS
>NZ_CP011602.1|WP_047370016.1|1457414_1458827_-|pyruvate-kinase-PykF
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKKAAILLDTKGPEIRTIKLEGGNDVSLKAGQTFTFTTDKTVIGNAETVAVTYEGFTSDLQVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVEEIRQHLKAHGGENIQIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVTIMATICERTDRVMTSRLDFNNDSRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNETTARQLVLSKGVVAQLVEEIASTDDFYRLGKELAVQSGLAQKGDVVVMVSGALVSSGTTNTASVHVL
>NZ_CP011602.1|WP_007374746.1|1456869_1457106_-|major-outer-membrane-lipoprotein
MNRTKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAIRSDVQAAKDDAARANQRLDNQAHSYRK
>NZ_CP011602.1|WP_047370015.1|1455787_1456804_+|L,D-transpeptidase-family-protein
MKRASTITLSLIGAFSAIQMAWAVDYPLPPAGSRLIGQNQTYTVQESDKNLQAIARHFDTAAMLIIEANNTIAPVPRAGTVVTIPSQMLLPDTPRDGIVVNLAELRLYYYPPGKGIVQVFPLGIGQQGLETPVTTTRISQKIPNPTWTPTAGIRARSLAQGIELPPVVPAGPNNPLGRYALRLGIGNGEYLIHGTSAPDSVGLRVSSGCMRMNAADIQALFSQVNTGTRVTILNEPVKYAVEPDGRHYIEVHRPLSQNVGEDTQRLPIAFSMSLASTIEQGGGDRALIDKALYRRAGYPVAIPANQSGKVTTQSVLSVQNRGADTEVNTEEGGKTVTQ
>NZ_CP011602.1|WP_047370014.1|1455275_1455692_+|cysteine-desulfuration-protein-SufE
MAVLPDRDKLLRNFGRCANWEEKYLYIIELGQRLPALSDEAHSPENIIQGCQSQVWIVMRRNDEGMIELAGDSDAAIVKGLIAIVFILYQQMTAQDIVAFDVRPWFEKMSLTQHLTPSRSQGLEAMIRAIRSKAANIS
>NZ_CP011602.1|WP_047370013.1|1454041_1455262_+|cysteine-desulfurase-SufS
MSFSVHNVRADFPILTREVNGVPLAYLDSAASAQKPNQVIDAEAEFFRHGYAAVHRGIHTLSAEATQRMELVRTQVAGFLNARLPEELVFVRGTTEGINLVANSWGASQVHAGDNIIISAMEHHANIVPWQMLCERVGAELRVIPINIDGTLQLEALPGLFDARTRLLAITHVSNVLGTENPVADIIALAHQHGAKVLIDGAQAIMHHPVDVQALDCDFYVFSGHKLYGPTGIGVLYVKEDILQAMPPWEGGGAMIATVSLTEGTTYAKAPWRFEAGTPNTGGIIGLGAAIDYVSGLGLDAIAQYEETLMRYALNALADVPDLTLYGPQERLGVIAFNLGKHHAYDVGSFLDNYGVAVRTGHHCAMPLMAFYHVPAMCRASLVMYNTEEEVDRLVAGLKRIHQLLG
>NZ_CP011602.1|WP_047370012.1|1452773_1454045_+|Fe-S-cluster-assembly-protein-SufD
MAGLQNSSNALQQWHHLFEQQGGARSEQAQQHLQQMLRLGLPTRKHENWKYTPLDGLLNSQFVTTAGALSAQECDALALPVDALRLVFVDGYYNASLSDDIAGSGFTVTINDDRQPLQAPVQPEVFLHLTESLAQSITHISVGRNQRATKPLLLMHITQGLAGAGMNTAHYRHHISLAEGAEATLYEHYVSLNAHRHFTGARLTMDVAANARLHHVKLAFENPESYHFAHNDIRLGADAAAYSHSFLLGSAVLRHNTSTQLNGENTTLRMNSLAMPVKSEVCDTRTWLEHNKGYCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTDGQMTNNNLLLGRLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQLFYLRSRGIDQQAAQKMIIYAFAAELTEAISDEALRQQVMARIGERLAGGLA
>NZ_CP011602.1|WP_047370011.1|1452052_1452799_+|Fe-S-cluster-assembly-ATPase-SufC
MLRIKDLQVSVEDKEILRGLSLDVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGSVEYKGKDLLELSPEDRAGEGVFMAFQYPVEIPGVSNQFFLQTALNAVRKYREQDELDRFDFQDLMEDKIKLLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPDLCILDETDSGLDIDALKIVADGVNALRDDKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWLTEQQ
>NZ_CP011602.1|WP_047370020.1|1463756_1464041_-|hypothetical-protein
MAGIVALVYFVVGFVAFTRKIKLFTIASSLLLFAALKIIAASQVLTFFFIALLVIAFFVLLMVKFPRENKSTLYFSFPCWLLIGAVLLHLFYFS
>NZ_CP011602.1|WP_047370021.1|1464157_1465531_-|MdtK-family-multidrug-efflux-MATE-transporter
MQKYFTEARQLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPTVAQLNGSGRRERIAHQVRQGFWLAAAVSILIMIVLWNAGYIIHAMHDIDPQLADKAVGYLRALLWGAPGYLFFQVVRNQCEGLAKTKPGMVMGFLGLLVNIPVNYVFIYGHFGMPELGGVGCGVATASVYWVMFIAMLSYVKRAGSLRDIRSETHSGKPDLSVLKRLVQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGFRLGQGSTLDAQTAAHTGLGVGVCMAVLTAIFTVALREHIALLYNDNPEVVTLASQLMLLAGLYQISDSIQVIGSGILRGYKDTRSIFFITFTAYWVLGLPSGYVLALTDLVVDRMGPAGFWMGFIIGLTSAAILMMLRMRFLQRQPSSIILQRAAR
>NZ_CP011602.1|WP_047370022.1|1466022_1466631_+|class-I-SAM-dependent-methyltransferase
MESHAAKHILSLYERHADEFARLRPRDLFEKKWLDKFIQRLRPRGHILDIGCGNGKPIAEYFIAGGFTLTGVDGSAAMIAQAQTHFPAQRWIHRDMRHLTMDETFDGLIAWDSFFHLTQNDQRAMFPRFAALSHPGSALMFTSGTSNGIAMGTFAGEPLYHASLAPEEYREILAQHGFTVVDVQFEDPECGYHSIWLCKKVN
>NZ_CP011602.1|WP_047370023.1|1466758_1467400_+|riboflavin-synthase
MFTGIVQGTAKLVSIDDKPNFRTHVVELPDHMLEGLETGASVANNGCCLTVTDINGSHISFDLMKETLRITNLGELTVGDAVNVERAAKFSDEIGGHLMSGHIMTTAEIVKILTSENNRQIWFKVQDPALMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLQRTTLGSKKLGHRVNIEIDPQTQAVVDTVERVLAAKEAAAVMVSNDE
>NZ_CP011602.1|WP_047370024.1|1467534_1468683_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVRDDNWFRIANELLSRAGIQVNGPSASDIQVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDVFFTKVLRAGLEKQLPRHLKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFTRMLDPQMQYSCAYWKEAERLEDAQIAKLRLICEKLQLKPGMRVLDIGCGWGGLAQFMAQNYAVSVVGVTISAEQQKLAQQRCMGLDVDIRLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFTVVDRNLKPDGLFLLHTIGSRRTDHNVDPWIDRYIFPNGCLPSVRQIANASESHFVMEDWHNFGADYDKTLMAWHERFLACWPDIADNYSERFKRMFSYYLNACAGAFRARDIQLWQVVFSRGIEHGLRVAR
>NZ_CP011602.1|WP_047370025.1|1468984_1470184_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKGFLVWLAGLSVLGFLATDMYLPAFADIQQDLNTSAAAVSATLSLFLAGFAVAQLVWGPLSDRYGRKPVLLSGLAIFAVGCLGMLWVQNAVWLLVLRFIQAVGVCAAAVTWQALVTEHYPAQRTNRIFATIMPLVGLSPALAPLLGSWILAHFSWQAIFATLFMITVILMLPALRLRRGAHLPAQTTQALTFAALLRDKAYRGNVLIYATCSASFFAWLTGSPFILHEMGYGPAVIGLSYVPQTIAFLVGGYGCRAALQKWAGARLLPWLLLAFALSVAATWGVGLLPGATLTALLIPFCLMAMANGAIYPIVVAQALRPFPQATGRAAALQNTLQLGLCFVASLVVSGFIAHPLLATTSVMLSTVVLVAFGYRMQRQESESYHADEVSESSSHA
>NZ_CP011602.1|WP_047370026.1|1470296_1471208_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSGAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTPAGVWFLKEGRSVIKKMQITRQQCQQIANGWRGQLSIAVDNIVKPERTRQMIVDFYRHFSDVELLVSQEVFNGVWDALADGRVELAIGATQAIPVGGRYTFRDMGMLSWKCVVARHHPLAAMASPLSDDTLRNWPSLVREDTSRSLPKRITWLLDNQKRVVAPDWESSAACLSAGLCIGMVPAHFARPWIDRGEWVALALENPFPDAACCLTWQQNDASPALSWLLDYLGDSETLNREWLREQE
>NZ_CP011602.1|WP_047370027.1|1471224_1472250_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPESLLSMLEEYRHIPMVVMDWGEAKADFTDTVIDNAFAGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLSGFMKAMEEAHITVPESWIVQGDFEPESGYRAMQQILTQSSRPTAVFCGGDIMAMGALCAADEMGLRVPQDISVIGYDNVRNSRFFTPSLTTIHQPKDSLGETAFNMLLDRIVNKREESQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP011602.1|WP_090086635.1|1472548_1472638_+|YnhF-family-membrane-protein
MSTDLKFSLVTTVIVLALIVAGGLTAALH
>NZ_CP011602.1|WP_047370028.1|1472804_1473974_+|MFS-transporter
MKINFPLLALAIGAFGIGTTEFSPMGLLPVIAQGVDVSIPAAGMLISAYAIGVMVGAPLMTLLLSHRGRRNALVFLMAIFTLGNVLSALSPDYTTLMLSRIITSLNHGAFFGLGSVVAASVVAKEKQASAVATMFMGLTIANIGGVPAATWLGGAIGWRMSFLATAGLGIIAMVSLYFSLPKGRAGERPDVRKELAVLMRPQVVSALLTTVLGAGAMFTLYTYISPVLHRITDATPAFITAMLVLVGVGFSIGNYLGGKLADRSVTATLKGFLLLLIVIMAAIPWLARSEIGAAISMVIWGAATFAVVPPLQMRVMRVAHEAPGLSSSVNIGAFNLGNALGAAAGGAVISGGLGYTVVPVTGAIIAGMALLLVLLSGRTNAERTCTAAE

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Crispr_ID: NZ_CP011602_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011602_3

1644237-1644337

Orphan

Consensus_repeat	Method
GCAGCCTGAGCTTTCTGCTCTACAGCCGGTTTAGCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011602_3

>merge|NZ_CP011602|3|1644237-1644337|CRISPRCasFinder
GCAGCCTGAGCTTTCTGCTCTACAGCCGGTTTAGCGGCAACTTTTTTGTGGTGTTTTTTCTTGGCAGCCTGAGCTTTCTGCTCTACAGCTGGTTTAGCGGC

>NZ_CP011602|3|3|1644237-1644337|CRISPRCasFinder
GCAGCCTGAGCTTTCTGCTCTACAGCCGGTTTAGCGGC	AACTTTTTTGTGGTGTTTTTTCTTG
GCAGCCTGAGCTTTCTGCTCTACAGCTGGTTTAGCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011602.1\|WP_047370172.1\|1650805_1651501_+\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|237083
NZ_CP011602.1\|WP_047370169.1\|1647073_1648324_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340882
NZ_CP011602.1\|WP_047370168.1\|1645407_1646895_-\|carboxypeptidase-M32	unknown	unknown	gnl\|CDD\|341054
NZ_CP011602.1\|WP_052958824.1\|1634679_1634961_-\|flagellar-transcriptional-regulator-FlhD	unknown	unknown	gnl\|CDD\|368356
NZ_CP011602.1\|WP_047370171.1\|1649459_1650680_+\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
NZ_CP011602.1\|WP_047370162.1\|1638646_1639714_+\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NZ_CP011602.1\|WP_047370160.1\|1635838_1636549_+\|molecular-chaperone	unknown	unknown	gnl\|CDD\|225663
NZ_CP011602.1\|WP_047370164.1\|1640464_1640794_+\|multidrug/spermidine-efflux-SMR-transporter-subunit-MdtI	unknown	unknown	gnl\|CDD\|182618
NZ_CP011602.1\|WP_047370158.1\|1631178_1632015_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP011602.1\|WP_047373265.1\|1637861_1638254_-\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	unknown	unknown	gnl\|CDD\|182350
NZ_CP011602.1\|WP_047370165.1\|1643071_1643893_-\|serine-protease	unknown	unknown	gnl\|CDD\|226119
NZ_CP011602.1\|WP_047370159.1\|1632001_1632748_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|226599
NZ_CP011602.1\|WP_047370176.1\|1654328_1655039_-\|osmoprotectant-ABC-transporter-permease-OsmY	unknown	unknown	gnl\|CDD\|224095
NZ_CP011602.1\|WP_047370163.1\|1640115_1640478_+\|multidrug/spermidine-efflux-SMR-transporter-subunit-MdtJ	unknown	unknown	gnl\|CDD\|182471
NZ_CP011602.1\|WP_047370167.1\|1644877_1645348_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP011602.1\|WP_167337875.1\|1636920_1637613_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP011602.1\|WP_047370173.1\|1651600_1652749_-\|osmoprotectant-ABC-transporter-ATP-binding-protein-OsmV	unknown	unknown	gnl\|CDD\|224050
NZ_CP011602.1\|WP_047370175.1\|1653405_1654308_-\|osmoprotectant-ABC-transporter-substrate-binding-protein-OsmX	unknown	unknown	gnl\|CDD\|270329
NZ_CP011602.1\|WP_047370170.1\|1648432_1649329_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176106
NZ_CP011602.1\|WP_047370174.1\|1652748_1653396_-\|osmoprotectant-ABC-transporter-permease-OsmW	unknown	unknown	gnl\|CDD\|224095

Protein	Function_ID	Function_description	E-value
NZ_CP011602.1\|WP_047370172.1\|1650805_1651501_+\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|237083	PRK12374, PRK12374, ATP-dependent dethiobiotin synthetase BioD.	6.05798e-157
NZ_CP011602.1\|WP_047370169.1\|1647073_1648324_-\|MFS-transporter	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.35318e-88
NZ_CP011602.1\|WP_047370168.1\|1645407_1646895_-\|carboxypeptidase-M32	gnl\|CDD\|341054	cd06460, M32_Taq, Peptidase family M32, which includes thermostable carboxypeptidases TaqCP, PfuCP and FisCP. Peptidase family M32 is a subclass of metallocarboxypeptidases, distributed mainly in bacteria and archaea, whose members contain a HEXXH motif that participates in coordinating a divalent cation such as Zn2+ or Co2+. It includes the thermostable carboxypeptidases (E.C. 3.4.17.19) from Thermus aquaticus (TaqCP) and Pyrococcus furiosus (PfuCP), which have broad specificities toward a wide range of C-terminal substrates that include basic, aromatic, neutral and polar amino acids. These enzymes have a similar fold to the M3 peptidases such as neurolysin and the M2 angiotensin converting enzyme (ACE). The keratin-degrading extremophilic eubacterium Fervidobacterium islandicum M32 carboxypeptidase (FisCP) plays an important role in cellular metabolism, and significantly enhances the degradation of native chicken feathers. It has been shown to mainly cleave the C-termini of peptides with a basic amino acid sequence. Novel M32 peptidases from some eukaryotes: protozoa Trypanosoma cruzi, a causative agent of Chagas' disease, and Leishmania major, a parasite that causes leishmaniasis, have been identified, thus making these enzymes an attractive potential target for drug development against these organisms.	0
NZ_CP011602.1\|WP_052958824.1\|1634679_1634961_-\|flagellar-transcriptional-regulator-FlhD	gnl\|CDD\|368356	pfam05247, FlhD, Flagellar transcriptional activator (FlhD). This family consists of several bacterial flagellar transcriptional activator (FlhD) proteins. FlhD combines with FlhC to form a regulatory complex in E. coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator.	5.8441e-10
NZ_CP011602.1\|WP_047370171.1\|1649459_1650680_+\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.07868e-69
NZ_CP011602.1\|WP_047370162.1\|1638646_1639714_+\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	2.52985e-41
NZ_CP011602.1\|WP_047370160.1\|1635838_1636549_+\|molecular-chaperone	gnl\|CDD\|225663	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion].	1.45056e-69
NZ_CP011602.1\|WP_047370164.1\|1640464_1640794_+\|multidrug/spermidine-efflux-SMR-transporter-subunit-MdtI	gnl\|CDD\|182618	PRK10650, PRK10650, multidrug/spermidine efflux SMR transporter subunit MdtI.	4.78518e-51
NZ_CP011602.1\|WP_047370158.1\|1631178_1632015_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	6.92425e-127
NZ_CP011602.1\|WP_047373265.1\|1637861_1638254_-\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	gnl\|CDD\|182350	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit.	8.21811e-32
NZ_CP011602.1\|WP_047370165.1\|1643071_1643893_-\|serine-protease	gnl\|CDD\|226119	COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid transport and metabolism].	2.22874e-78
NZ_CP011602.1\|WP_047370159.1\|1632001_1632748_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|226599	COG4114, FhuF, Uncharacterized Fe-S protein [General function prediction only].	9.28373e-14
NZ_CP011602.1\|WP_047370176.1\|1654328_1655039_-\|osmoprotectant-ABC-transporter-permease-OsmY	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	2.77019e-68
NZ_CP011602.1\|WP_047370163.1\|1640115_1640478_+\|multidrug/spermidine-efflux-SMR-transporter-subunit-MdtJ	gnl\|CDD\|182471	PRK10452, PRK10452, multidrug/spermidine efflux SMR transporter subunit MdtJ.	2.02603e-58
NZ_CP011602.1\|WP_047370167.1\|1644877_1645348_-\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.35319e-11
NZ_CP011602.1\|WP_167337875.1\|1636920_1637613_+\|fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	1.2871e-10
NZ_CP011602.1\|WP_047370173.1\|1651600_1652749_-\|osmoprotectant-ABC-transporter-ATP-binding-protein-OsmV	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	2.22742e-159
NZ_CP011602.1\|WP_047370175.1\|1653405_1654308_-\|osmoprotectant-ABC-transporter-substrate-binding-protein-OsmX	gnl\|CDD\|270329	cd13611, PBP2_YehZ, Substrate-binding domain YehZ of an osmoregulated ABC-type transporter; the type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein YehZ of Clostridium sticklandii is predicted to be involved in uptake of compatible solutes such as choline, L-proline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. YehZ belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	9.5745e-137
NZ_CP011602.1\|WP_047370170.1\|1648432_1649329_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176106	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LTTRs involved in degradation of aromatic compounds, such as CbnR, BenM, CatM, ClcR and TfdR, as well as that of other transcriptional regulators clustered together in phylogenetic trees, including XapR, HcaR, MprR, IlvR, BudR, AlsR, LysR, and OccR. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.84805e-65
NZ_CP011602.1\|WP_047370174.1\|1652748_1653396_-\|osmoprotectant-ABC-transporter-permease-OsmW	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	4.09291e-74

>NZ_CP011602.1|WP_047370165.1|1643071_1643893_-|serine-protease
MRKTVVLLLGSFFLFSAYGHADEGDDDTIDAAQIKTLFFGHDDRVRVTTPTRSPWDAIGQLETASGNLCTATLISPHLALTAGHCLLTPPNGKPDKAVALRFVAQKGTWRYEIHGIEGRVDPSLGKRLKPDGDGWIVPSSAAPWDFGLVVLRNPPSGITPLPLFVGDKAALTDALKVAERKVTQSGYPADHLDTLYSHENCVVTGWAQNSVLSHQCDTLPGDSGSPLMLKTAEGWQLIAVQSSAPAAKDRWRADNRAISVTGFRDKLEALAKE
>NZ_CP011602.1|WP_047370164.1|1640464_1640794_+|multidrug/spermidine-efflux-SMR-transporter-subunit-MdtI
MQQFEWVHGAWLAAAIVLEIVGNIFLKLSAGFRHKLYGIGSLAAVLAAFAALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNNKGWAGVILLIVGMILIKLA
>NZ_CP011602.1|WP_047370163.1|1640115_1640478_+|multidrug/spermidine-efflux-SMR-transporter-subunit-MdtJ
MIYWVLLALAIVAEITGTLSMKWASVTDGYTGFILMLVMIALSYILLSFAVKKIALGVAYALWEGIGILLITLFSVVLFDEALSPLKIAGLMTLVAGIVLIKSGTRKAVNTPQERRNATV
>NZ_CP011602.1|WP_047370162.1|1638646_1639714_+|AI-2E-family-transporter
MTALKTHNFFFIVLLLLVSVAFFSLIQPYYAAIIWAVILALIFYPLRVKLTGWLRGRDGIASLLTVLLICVLVFIPLMIIVTSLITETNALYQRLQNNATDLPQLFTDSISYLPGWAQGYLRENDFDSVGAIREKLSGVALSSGRYLAGSAVIIGKNTLSISVSFCLMVYLLFFLLKDGSRLVRRIFTAIPLTDKIKRRLFHKFASVSRATVKGTLVVAIVQGALGGFGFWFSGINGSLLWGSLMAFLSLIPAVGTALIWVPAAIFLFSTGEIITGTMMSLYFIVVVGLADNILRPLLVGKDTRMPDYLILLTTLGGLQFFGINGFVLGPMIAGLFIASWNLLAEDRALAMKSEP
>NZ_CP011602.1|WP_047373265.1|1637861_1638254_-|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit
MTTSAFPSPAADYIEGAIDLVAHLISHPSATYVLRTASDAMCGAAILPGSLLLVDSSLQPVDGDIVVARLLSGFTVRRLRLSPPRLVAENENYRTVYIDEEEGAHIVGVVTTIITTPRRTLHVRAASVRA
>NZ_CP011602.1|WP_167337875.1|1636920_1637613_+|fimbrial-protein
MVWTEVYPPNIVVKNNLGSYHHGFGDGFFEAAQHFLIKAQLYVTGPIGDEADALDLNFTIEGWNNTTRNSTEGGVEWSRLTITGHVPVTVKSCETPDILVDLKKHSKPDFTTVGSTSAATPFNFEIKKCSKDMAAVKYTFKPAAGINLVNPGASNQHVTLRTGSTASGVGVQVLYANDTLVPFNTAVKYTGYNASLGGDYVIPMKARFIRTGEVTPGTAESAVEFTMAYE
>NZ_CP011602.1|WP_047370160.1|1635838_1636549_+|molecular-chaperone
MQGQVFFLFFLLASATAQAAVQFDGTRVIYPAAKREVTLALTNNASGPRLLQAWMDDGNPDLRPETGKVPFIVTPPVFRLNAEKGQSLRIRFTGGKVPQDRESVWWLNVLEVQPKTERGAKNPNLVHFPVRTRLKVFYRPAGLPGTPGGAVNTLRWRLSREAGAMKIICENPSAFNVSLARISLYATDRPNEEVKGMCLAKGSAAFTLEGTETGKVYFTTISDYGGFARHSAVYTG
>NZ_CP011602.1|WP_052958824.1|1634679_1634961_-|flagellar-transcriptional-regulator-FlhD
MITPVSVLKEIHNLNLSYLLLAQRVAAEDIKQAECFLNMDIELIQAVKQLTATQILALAETNQCLIKVQSNLVTSLAEQENPQPAHGLHQRGL
>NZ_CP011602.1|WP_047370159.1|1632001_1632748_+|(2Fe-2S)-binding-protein
MLTSEEYAYLQNVFRLRTLAQADRRSVPGEAIGDVQTCRALLERVMPLIGAPDLAIAASLFAKRVAFLPSGNVLYAMSVFDKGLPLSLNTCRLEYAHDGGLWTSSLPMDVTATAYTPGAREAWREAIIGALFRTFFAPLWQSLSQVSGLSQHILWENTAVRVYSLYQGRMEGLTVEQEERQQADFAWLLEGAEPSLFGLPWNPLQRFRRPLQQSAAGTRVRFRRTCCFYYKTVQPVAYCHNCPLCKVT
>NZ_CP011602.1|WP_047370158.1|1631178_1632015_+|ABC-transporter-ATP-binding-protein
MAAHPAANVTDEENVSLTTQKLSISYQQQQVIDSLDLALPAAKVSVLIGSNGCGKSTLLKAMARLLTPQSGTVILEGADIHTSNTAQIARKLAILPQTPVAPEGITVRQLVSLGRFPYQNWLRQWSIDDEQQVEEALRLTGTAALQHRPVDALSGGQRQRVWIAMTLAQATNTVLLDEPTTYLDLAHQIEILELLRGLNQQQGKTIVMVLHDLNLACRYADHLVAVHQGRIYAQGTPKQVMTETLVREVFNLRCRIIDDPFFHTPLCIPFPGETHADE
>NZ_CP011602.1|WP_047370167.1|1644877_1645348_-|N-acetyltransferase
MIVLHPMSETDFAGFLAYFIPDYAEEIAANYHLSQEEAVAQAKREIAASLPDGEKTQGQSLKSIVHTDNGGEQQIGYLWYRANTEDQSAFIYDFYLLPAFRSQGLGSRAMQSLEALLTGQGIRQIKLRVAAENAHAKKVYEANGYQVTGYNMNKLL
>NZ_CP011602.1|WP_047370168.1|1645407_1646895_-|carboxypeptidase-M32
MDNNQNYQSLTRTFTRLSRFQHLSAIAGWDMFAMMPPGGSTARGEALAELGVLQHQILTDKKVGEWLQNALSEDLNDVEQANLREMTRQYQQAALLPESLVEAKALAGSKCEHAWRTQRPANDWTGFSANLKEVVKLSREEAKIRARAKGCSPYDALLDIFEPDMTSARLDVLFADLKSWLPDLLQRVVDKQSRETLIAPVGPFPVATQRELGLEAMTLLGFDFNAGRLDVSAHPFCGGVPEDVRITTRYDENELLSALFGVVHETGHARYEQNLPRQWLGQPVALARSTAIHESQSLFFEMQLGRSEAFLKRLLPAIIQRFGAQPAFEEGNFIAWNQRVKPGFIRVDADEVSYPAHVILRYEIERALINGEIEVDDIPALWNEKMLAWLGLSTEGNYRNGCMQDIHWTDGGFGYFPSYTLGAMYAAQLFQAARTALPGLDDAIAQGDFSALFDWLRQNIWQHGSRFSTSQLIEQATGEALNSRYFRQHLTTRYL
>NZ_CP011602.1|WP_047370169.1|1647073_1648324_-|MFS-transporter
MSRTTTVDTLPASGVDENNRSLPTQFIKRGTPQFMRVTLALFSAGLATFALLYCVQPILPVLSQEFGVSPANSSISLSISTAMLAIGLLFTGPLSDAIGRKKVMVTALLLASCCTLLSTLMTSWHGILLMRALLGLSLSGVAAVGMTYLSEEIHPSFVAFSMGLYISGNSIGGMSGRLISGVFTDFFNWRIALAAIGCFALAAALMFWRILPESRHFRPSSLRPRTLFINFRLHWRDKGLPLLFLEGFLLMGSFVTLFNYIGYRLMQSPWFLSQAVVGLLSVAYLTGTWSSPRAGAMTAKYGRGPVMVASIAIMLSGLLLTLFPSLWTIFIGMLLFTAGFFASHSVASSWIGPRARRAKGQASSLYLFSYYLGSSIAGTLGGVFWHNYGWNGVGGFIALMLLLALCVGSRLHRRLR
>NZ_CP011602.1|WP_047370170.1|1648432_1649329_+|LysR-family-transcriptional-regulator
MNIELRHLRYFIAVAEELHFGHAAARLNISQPPLSQQIQILEQQIGAKLLARTNRSVSLTPAGRQFLADSRQILSQVDDAVSRAARLHQGETGDLRIGFTSSAPFITAVSDTLSSFRQRFPDVHIQTREINTREQIAPLNEGKLDLGLMRNTLLPDTLAWQVILREPLLAMIHRDHPLAAKPGVSLAELAREPFVFFDPHVGTGLYDDILGLLRRYHLTPLITQEVGEAMTIIGLVAAGLGVSILPASFRRVQLKEMRWVPILETDAVSEMWLVWAKHHEQGTAAQRFRQQLISAVNA
>NZ_CP011602.1|WP_047370171.1|1649459_1650680_+|ROK-family-transcriptional-regulator
MVADSQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQETEIQEPGSRGRPAVGLVVETEAWHYLSLRISRGEIFLSLRDLSSKLVVEERQELPLTDDKPLLQRIIVHIDQFFIRHQQKLERLTAIAITLPGIIDTEHGIVHRMPFYEDVKDMPLGEMLEQHTGVPVYVQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGRLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVESVLELAQLRMSQSMSSMLHQQPLTVESLCDAAQQGDLLAKDIISGVGANVGRILAIMVNLFNPQKILIGSPLSKAADILFPAIADCIRQQALPAYSKHIAVESTQFTNQGTMAGAALVKDAMYNGSLLIRLLQG
>NZ_CP011602.1|WP_047370172.1|1650805_1651501_+|ATP-dependent-dethiobiotin-synthetase-BioD
MLKRFFVTGTDTSVGKTVVSRALLQALAAGGSTVAGYKPVAKGSKETPEGLRNKDALVLQSVSSIDLPYSAVNPIAFSEDESSVAHSSAINYTLLSNGLASLCDQVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQMGVLMVVGIQEGCINHALLTAQAIASDGLPLIGWVANRINPGLAHYAEIINVLSRKLPAPLVGELPYLPRAEQRDLAHYINLQMAKGMLAAERVLA
>NZ_CP011602.1|WP_047370173.1|1651600_1652749_-|osmoprotectant-ABC-transporter-ATP-binding-protein-OsmV
MIKLENLTKQFTQKNGQTVKAVDNINLHVPQGEMCVLLGPSGCGKTTTLKMINRLIMPSSGKILVNDNDTSEMDIVSLRRNLGYVIQQIGLFPNMTIEENITVVPRMLGWDKARCKSRAEELMEMVALDAKKFLHRYPREMSGGQQQRIGVIRALAADPPVLLMDEPFGAVDPINREVIQNQFLEMQRTLKKTVMLVSHDIDEALKLGDRIAVFRQGRIVQCASPDELLAKPANEFVGSFVGQDRTLKRLLLVSAGDVTDQQPTLTVRESTAAQEAFAMMDDNDIRAITVVDGDGKPLGFVKRREARGAQGDCAGLLHPFRITGKAEDNLRVVLSKLYESNTSWMPIVDEAGRYNGEISQDYIADYLSSGKTRRVLNIHSDA
>NZ_CP011602.1|WP_047370174.1|1652748_1653396_-|osmoprotectant-ABC-transporter-permease-OsmW
MDTIHYMIDNWSYLAMLTVQHLWLVLLAVGLAIVTGVPLGILIVRHKWLATPVLGLATIVLTIPSIALFGLMIPLFSLVGQGIGALPAITAVFLYSLLPIVRNTHTALDSLPPGLREAGRGIGMTFWQRLRWVEIPMALPVIFGGIRTAVVMNIGVMAIAAVIGAGGLGLLLLNGIGGSDIRMLIAGALMICLLAIVLDWLLHRLQVVLTPKGIR
>NZ_CP011602.1|WP_047370175.1|1653405_1654308_-|osmoprotectant-ABC-transporter-substrate-binding-protein-OsmX
MRLTSRLLGLLSATLLFTASVHAAPLILATKSFTEQHILSALTVQYLQKKGFQVQPQTNIATVISRNAMINKQVDMTWEYTGTSLIIFNHIKERMTPEQSYETVKRLDAKHGLVWLKPANMNNTYAFAMQRKRAEAEHINTMSDMVAKIEQIRKSDPKHNWMLGLDLEFSGRSDGMKPFQQAYNLALDRPQIRQMDPGLVYNAVRDGFVDAGLVYTTDGRVKGFDLKVLEDDKGFFPSYAVTPVVRKDTLAANPGLEEALNTLSGLLNNDVIMTLNAKVDIDHQTPQQVAHDFLREKGLL
>NZ_CP011602.1|WP_047370176.1|1654328_1655039_-|osmoprotectant-ABC-transporter-permease-OsmY
MHTSALSRALLFTAAIVVVLALLVWGIGLDTIRARQVDLVYLGQQHLILVFSSMFFALLIGIPSGIALSRPAARGVAEYVMQIFNVGNTLPPLAVLALAMVIVGIGDKPAIFALFLASLLPIVRNTYAGLCSVPAALLEAANGIGMTKWQRLYQVELPNALPVILSGVRIATAINVGTAPLAFLIGASSYGELIFPGIYLNDFPTLILGAAATALFALILDTLLAALGRFLSPHSA

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Crispr_ID: NZ_CP011602_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011602_4

3692790-3692921

Orphan

Consensus_repeat	Method
TGCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011602_4

>merge|NZ_CP011602|4|3692790-3692921|CRISPRCasFinder
TGCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGACCGCACGCCAGGTAAACAGCAGATTTTCTCAACGAGAAAATCTTTAGTGTCTGCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG

>NZ_CP011602|4|4|3692790-3692921|CRISPRCasFinder
TGCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG	CATCAGACCGCACGCCAGGTAAACAGCAGATTTTCTCAACGAGAAAATCTTTAGTGTC
TGCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011602.1\|WP_047371782.1\|3686781_3687579_-\|Fe3+-hydroxamate-ABC-transporter-ATP-binding-protein-FhuC	unknown	unknown	gnl\|CDD\|182561
NZ_CP011602.1\|WP_047371781.1\|3685891_3686782_-\|Fe(3+)-hydroxamate-ABC-transporter-substrate-binding-protein-FhuD	unknown	unknown	gnl\|CDD\|236719
NZ_CP011602.1\|WP_039078421.1\|3681889_3682234_-\|iron-sulfur-cluster-insertion-protein-ErpA	unknown	unknown	gnl\|CDD\|184186
NZ_CP011602.1\|WP_047371791.1\|3700532_3701324_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723
NZ_CP011602.1\|WP_001155227.1\|3696928_3697384_+\|RNA-polymerase-binding-protein-DksA	unknown	unknown	gnl\|CDD\|182722
NZ_CP011602.1\|WP_047371777.1\|3680401_3681202_+\|vitamin-B12-ABC-transporter-substrate-binding-protein-BtuF	unknown	unknown	gnl\|CDD\|179575
NZ_CP011602.1\|WP_047371788.1\|3697510_3698407_+\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	unknown	unknown	gnl\|CDD\|274810
NZ_CP011602.1\|WP_039078406.1\|3702331_3702712_+\|aspartate-1-decarboxylase	unknown	unknown	gnl\|CDD\|180090
NZ_CP011602.1\|WP_047371783.1\|3687626_3689882_-\|ferrichrome-porin-FhuA	unknown	unknown	gnl\|CDD\|236643
NZ_CP011602.1\|WP_047371787.1\|3696052_3696757_+\|DNA/RNA-nuclease-SfsA	unknown	unknown	gnl\|CDD\|234733
NZ_CP011602.1\|WP_047371790.1\|3699929_3700415_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|182325
NZ_CP011602.1\|WP_047371779.1\|3682427_3683708_+\|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl\|CDD\|234607
NZ_CP011602.1\|WP_047371785.1\|3692943_3695373_-\|ATP-dependent-helicase-HrpB	unknown	unknown	gnl\|CDD\|236950
NZ_CP011602.1\|WP_071845927.1\|3698441_3699860_+\|polynucleotide-adenylyltransferase-PcnB	unknown	unknown	gnl\|CDD\|236939
NZ_CP011602.1\|WP_047371792.1\|3701335_3702202_+\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|234741
NZ_CP011602.1\|WP_047371780.1\|3683912_3685895_-\|Fe(3+)-hydroxamate-ABC-transporter-permease-FhuB	unknown	unknown	gnl\|CDD\|236720
NZ_CP011602.1\|WP_047371776.1\|3679710_3680409_+\|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase	unknown	unknown	gnl\|CDD\|180148
NZ_CP011602.1\|WP_047371778.1\|3681216_3681840_+\|TRIC-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|182564
NZ_CP011602.1\|WP_047371786.1\|3695509_3696040_+\|RNA-2',3'-cyclic-phosphodiesterase	unknown	unknown	gnl\|CDD\|185079
NZ_CP011602.1\|WP_047371784.1\|3690131_3692669_-\|bifunctional-glycosyl-transferase/transpeptidase	unknown	unknown	gnl\|CDD\|236544

Protein	Function_ID	Function_description	E-value
NZ_CP011602.1\|WP_047371782.1\|3686781_3687579_-\|Fe3+-hydroxamate-ABC-transporter-ATP-binding-protein-FhuC	gnl\|CDD\|182561	PRK10575, PRK10575, Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC.	0
NZ_CP011602.1\|WP_047371781.1\|3685891_3686782_-\|Fe(3+)-hydroxamate-ABC-transporter-substrate-binding-protein-FhuD	gnl\|CDD\|236719	PRK10576, PRK10576, Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD.	0
NZ_CP011602.1\|WP_039078421.1\|3681889_3682234_-\|iron-sulfur-cluster-insertion-protein-ErpA	gnl\|CDD\|184186	PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional.	1.47512e-81
NZ_CP011602.1\|WP_047371791.1\|3700532_3701324_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	2.71126e-161
NZ_CP011602.1\|WP_001155227.1\|3696928_3697384_+\|RNA-polymerase-binding-protein-DksA	gnl\|CDD\|182722	PRK10778, dksA, RNA polymerase-binding protein DksA.	2.27024e-91
NZ_CP011602.1\|WP_047371777.1\|3680401_3681202_+\|vitamin-B12-ABC-transporter-substrate-binding-protein-BtuF	gnl\|CDD\|179575	PRK03379, PRK03379, vitamin B12-transporter protein BtuF; Provisional.	1.9806e-161
NZ_CP011602.1\|WP_047371788.1\|3697510_3698407_+\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	gnl\|CDD\|274810	TIGR03838, queuosine_YadB, glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid. [Protein synthesis, tRNA and rRNA base modification].	1.2975e-156
NZ_CP011602.1\|WP_039078406.1\|3702331_3702712_+\|aspartate-1-decarboxylase	gnl\|CDD\|180090	PRK05449, PRK05449, aspartate alpha-decarboxylase; Provisional.	2.78614e-76
NZ_CP011602.1\|WP_047371783.1\|3687626_3689882_-\|ferrichrome-porin-FhuA	gnl\|CDD\|236643	PRK10044, PRK10044, ferrichrome outer membrane transporter; Provisional.	0
NZ_CP011602.1\|WP_047371787.1\|3696052_3696757_+\|DNA/RNA-nuclease-SfsA	gnl\|CDD\|234733	PRK00347, PRK00347, DNA/RNA nuclease SfsA.	1.31067e-137
NZ_CP011602.1\|WP_047371790.1\|3699929_3700415_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|182325	PRK10239, PRK10239, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase.	5.34304e-107
NZ_CP011602.1\|WP_047371779.1\|3682427_3683708_+\|glutamate-1-semialdehyde-2,1-aminomutase	gnl\|CDD\|234607	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase.	0
NZ_CP011602.1\|WP_047371785.1\|3692943_3695373_-\|ATP-dependent-helicase-HrpB	gnl\|CDD\|236950	PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional.	0
NZ_CP011602.1\|WP_071845927.1\|3698441_3699860_+\|polynucleotide-adenylyltransferase-PcnB	gnl\|CDD\|236939	PRK11623, pcnB, poly(A) polymerase I; Provisional.	0
NZ_CP011602.1\|WP_047371792.1\|3701335_3702202_+\|pantoate--beta-alanine-ligase	gnl\|CDD\|234741	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed.	8.95177e-168
NZ_CP011602.1\|WP_047371780.1\|3683912_3685895_-\|Fe(3+)-hydroxamate-ABC-transporter-permease-FhuB	gnl\|CDD\|236720	PRK10577, PRK10577, Fe(3+)-hydroxamate ABC transporter permease FhuB.	0
NZ_CP011602.1\|WP_047371776.1\|3679710_3680409_+\|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase	gnl\|CDD\|180148	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase.	2.20825e-141
NZ_CP011602.1\|WP_047371778.1\|3681216_3681840_+\|TRIC-cation-channel-family-protein	gnl\|CDD\|182564	PRK10578, PRK10578, hypothetical protein; Provisional.	3.33476e-125
NZ_CP011602.1\|WP_047371786.1\|3695509_3696040_+\|RNA-2',3'-cyclic-phosphodiesterase	gnl\|CDD\|185079	PRK15124, PRK15124, RNA 2',3'-cyclic phosphodiesterase.	8.97543e-116
NZ_CP011602.1\|WP_047371784.1\|3690131_3692669_-\|bifunctional-glycosyl-transferase/transpeptidase	gnl\|CDD\|236544	PRK09506, mrcB, bifunctional glycosyl transferase/transpeptidase; Reviewed.	0

>NZ_CP011602.1|WP_047371784.1|3690131_3692669_-|bifunctional-glycosyl-transferase/transpeptidase
MAGNDREPIGRKSRPSRPAKEKVSRRRVREEEYDEYEDDDGDEQDSAPRKGKGKGGKPRGKRRWFWLLLKICIVGAVLLAIYGVYLDQKIRSRIDGKVWQLPAAVYGRMVNLEPDMPISKNEMVKLLEATQYRQVTKMTRPGEFTVQAKSIEMIRRPFDFPDSKEGQVRARLTFDGDRLDSIENMDSNRQFGFFRLDPRLITMLSSPNGEQRLFVPRSGFPDLLVDTLLATEDRHFYEHDGISFYSIGRAVLANLTAGRTVQGASTLTQQLVKNLFLSSERSYWRKANEAYMALIVDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPVEELSLDQQAMLVGMVKGASIYNPWRNPKLALERRNLVLRLMQEQKVIDQELYDMLSARPLGVQPRGGVISPQPAFMQMVRQELQAKLGDDKVKDLSGVKIFTTFDSVAQDAAEKAAVEGIPALIKQRKLDDLETAMVVVDRFSGEVRAMVGGATPQFAGYNRAMQARRSIGSLAKPATYLTALSQPDKFRLNTSIADAPISLRLSNGQTWAPQNDDHRFSGQVMLVDALTRSMNVPTVNLGMAMGLPAVTDTWLKLGAPKDQLTANPSMLLGALNLTPIEVAQAFQTIASGGNRATLSALRSVIAEDGTVLYQSYPQSERAVPAQAAYLTLWTMQQVVQRGTGRQLGAKYPGLHLAGKTGTTNNNVDTWFAGIDGREVTITWVGRDNNQPTKLYGASGAMAIYQRYLANQSPIPLDLTPPEDITTMGVDDMGNFVCGGGGVRSLPVWTTSPETLCQQNPVQQQPQQGNPFDQSTPPPQQQQPQQQPPQQQEKSDGVAGWIKDMFGSN
>NZ_CP011602.1|WP_047371783.1|3687626_3689882_-|ferrichrome-porin-FhuA
MARQKTAQPVNTSLRKLAVVVATAVSGMSVYAQAATTQPEDTVTVTSSSTAPQENAWGPAATIAARHSATGTKTDTPIEKTPQSISVVTSEEMALHQPKSVKEALSYTPGVAVGTRGASNTYDYLVIRGFAADNQSQNNYLDGMKMQGNFYNDAVIDPYMLERAEILRGPASVLYGKSSPGGILNMVSKRPTTTPLYEVQFKMGTDNLYQTGFDFSDALDDDGVYSYRLTGLARSANAQQEGAKEQRYTIAPSFSWRPDDKTNFTFLSYFQNEPDTGYYGWLPKEGTVQPLPNGSRLPTDFNEGAKNNTYSRNEKMVGYSFEHGFNDTFTLRQNLRFAENKTAQNSVYGYGMCSDKLYSSSPSTSPCADIPQSEWGHTLTRQYVIDSEKLQTFTVDTQLQSKFATGTIDHTLLTGVDFMRMRNDIDSYFGYAGSVAPSDIYNLDRSDYDFGAHDGPSGPYRILLKQKQTGVYAQDQAQWDKVLVTLGGRYDWAKQDSLNRDYGTHPEREDKQFTWRGGVNYLFDNGVTPYFSYSESFEPASTTGADGAIFAPSKGKQYEAGVKYVPKDRPIVLTGALYQLTKTNNLMGDPAGSVWSVEGGEIRARGVEVEAKAALSASVNVVGSYTYTDAEYTTDTNYKGNTPAQVPKHMASLWGDYTLFDGALSGLTLGTGARFTGSSQGDPANTFKVGSYTLVDALVRYDLARVGLAGSNVALHVNNLFDREYVASCFNSYGCFWGAERQVVATATFRF
>NZ_CP011602.1|WP_047371782.1|3686781_3687579_-|Fe3+-hydroxamate-ABC-transporter-ATP-binding-protein-FhuC
MQENNALPDTTFQLTDVTFSVPGRTLLHPLSLTFPVGKVTGLIGHNGSGKSTLLKMLGRHQPPSQGDVLLDGQPLASWSSKSFARKVAYLPQQLPQAEGMTVRELVAIGRYPWHGALGRFGVADKEKVDEAITLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQQRGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPDTLMRAETLEQIYGIPMGILPHPSGAAPVSFVY
>NZ_CP011602.1|WP_047371781.1|3685891_3686782_-|Fe(3+)-hydroxamate-ABC-transporter-substrate-binding-protein-FhuD
MDGLNLISRRRLLTMMALSPLLWQMRSAQAAEIDTQRIVGLEWLPVELLLALGIKPYGIADIPNYNLWVNEPALPPGVIDVGLRTEPNLELLTQMKPSFLVWSAGYGPSADVLARIAPGQGFSFSDGKKPLATARKSLNEMARLFQMEAAAKAHLDTFDSFIADKKPHFRQRGERPLLMMTLLDARHMLVFTRNCLFQEVLDEFGIQNAWQGETTFWGSTAVGIDRLAMYKDVDVLCFDHGNDTEMRKLMATPLWQAMPFVRTGRFQRVPAVWFYGATLSAMHFARVLDNALGGKA
>NZ_CP011602.1|WP_047371780.1|3683912_3685895_-|Fe(3+)-hydroxamate-ABC-transporter-permease-FhuB
MRRPFALLPGLLLAVLCIAGAWLSWLNFNAALPRAQWGQALFTPDIDVIEQMLFHYSLLPRLVISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVSTGAQLGITVTTLWALPGALTMQFAALAGACVVGALVFGVAWGKRLSPVTLILAGLVVSLYCGAVNQLLVIFHHDALQSMFLWSTGTLTQTDWRGVQHLWPQLLGGVVLTLLLLRPLTLMGLDDGVARNLGLALSLVRLAALTLAIVLSALLVNAVGIIGFIGLFAPLLAKMLGARRLLARLMLAPLIGALILWLSDQLIQWLARVWMEVSTGSMTALIGAPLLLWLLPRLRSMSAPSMDVGDNVPTERQNVQWFALAGLAVLLLGILAALSFGRDAEGWRWISGTLLDELMQWRMPRIIAALTAGIMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVVMLFFVPGNAFGWLMPAGSLGAAITLLIILIAAGRGGFSPHRMLLAGMALSTAFTMLLMMLQASGDPRMAKILTWISGSTYHATFEQVIRTGLMMIVLLALVPLCRRWLTVLPLGGDTARSVGMALTPSRIGLLLLAAALTATATMTIGPLSFIGLMAPHIARMMGFRRTLPHIVMSALTGGVLLVFADWCGRMMMFPYQVPAGLLSTFIGAPYFIYLLRKQSR
>NZ_CP011602.1|WP_047371779.1|3682427_3683708_+|glutamate-1-semialdehyde-2,1-aminomutase
MSKSENLYNAARELIPGGVNSPVRAFTGVGGTPLFIERADGAYLYDADGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAQRGLSFGAPTEMEVKMAELVTQLVPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPADFARHTLTCTYNDLSSVREAFEQYPQDIACIIVEPVAGNMNCIPPKDDFLPGLRALCDEFGALLIIDEVMTGFRVALAGAQSYYDVTPDLTCLGKIIGGGMPVGAFGGRRDIMEALAPTGPVYQAGTLSGNPIAMAAGYACLTEVSQVGVHETLNDLTALLADGLIDAARGQGIPLVVNHVGGMFGLFFTDAPEVTCYQDVVACDVERFKRFFHLMLEEGVYFAPSAFEAGFMSVAHSEEDIRNTVDAARRVFAKL
>NZ_CP011602.1|WP_039078421.1|3681889_3682234_-|iron-sulfur-cluster-insertion-protein-ErpA
MSDDVALPLQFTDAAASKVKNLIADEDNPNLKLRVYITGGGCSGFQYGFTFDDQINDGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFVVTNPNATSTCGCGSSFSI
>NZ_CP011602.1|WP_047371778.1|3681216_3681840_+|TRIC-cation-channel-family-protein
MLVYWLDIVGTAVFAISGVLLAGKLRMDPFGVLVLGVVTAVGGGTIRDMALAHGPVFWVKDPTDLVVAMVTCMLTILLVRQPRRLPKWVLPVLDAVGLAVFVGIGVNKAFMAGTGPLVATGMGVLTGVGGGIIRDVLAREVPMILRTEIYATACIIGGIVHSTAAYVFDVPLENAAMLGMVVTLGIRLAAIRWHLKLPTFALDETGR
>NZ_CP011602.1|WP_047371777.1|3680401_3681202_+|vitamin-B12-ABC-transporter-substrate-binding-protein-BtuF
MAKHLFRALAALLIFASAWLSAAPRVISLSPANTEMAFAAGITPVGVSSYSDFPPEAKKIEQVATWQGLNIERIVALKPDVVLAWRGGNAERQVDQLERLGIKVLWLDAVTIEQVAESLAELAQYSPHPKQAQQASTELLAQYHALKKQYAGQSKKPVFLQFGGEPLFTSGKGSLQNEVLELCGGENIFAASRVPWPQVSREQVLAREPHAIVVAGDASEIPKIEQFWRKQLDIPVIPLTSDWFERAGPRIILAAQQLCPALAQVK
>NZ_CP011602.1|WP_047371776.1|3679710_3680409_+|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase
MKIGIIGAMEEEVTLLRDKIENRQTLTIGGCEIYTGTLNGTEVALLKSGIGKVAAAMGATLLLERCKPDVIINTGSAGGLASTLKVGDIVVSDEARYHDADVTAFGYEFGQLPGCPAGFKADEKLITAAESCIKQLNLNAVRGLIVSGDAFINGSVGLAKIRHNFPQAVAVEMEATAIAHVCHNFGVPFVVVRAISDVADQQSHLSFDEFLVVAAKQSSLMVETLVQNLARG
>NZ_CP011602.1|WP_047371785.1|3692943_3695373_-|ATP-dependent-helicase-HrpB
MSLLPVAAVLPDLLHALQRAPQVLLTAPTGAGKSTWLPLQLLQQGGIDGRILLLEPRRLAARNVAQRLAESLNEQPGDTVGYRMRAQTCVGPNTRLEVVTEGILTRMIQHDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLVMSATLDNSRLQTLLPDAPLIISEGRMYPVERRYQALSTHQRVDEAVAVATADLLRSQSGSLLLFLPGVGEIQRVQEQLASRVAEDVMLCPLYGALPLNEQRKAILPPPVGKRKVVLATNIAETSLTIEGIRLVVDSAQERVARFDSRTGLTRLVTQRVSQASMTQRAGRAGRLEPGICLHLTGKEQAERAAVQSEPEILQSDLSGLFMELLQWGCQDPAQLNWLDLPPTTNLAAAKRLLTQLRALEGDRLSPFGKKMASLGNDPRLAAMLASASNADEVATAAKLAAILEEPPRGGNTDLRSAFSRNQPQWQQRARQLIRRLKSAEGEPDSDLLAPLLASAFADRIARRRGQDGRYQLANGMGAMLDADDALNRHEWVLAPLLLQGSQSPDARILLALPLDIDRLMAACPHIVQPSDSVEWDEAQGTLKAFRRSRIGQLTVKVQPLAKLPEEELHQAMLNGIRDKGLDVLNWTPEAKQLRLRLHCAAKWLPEEAWPAVDDASLLASLESWLLPQMRGVHSLRALKALDVGEALKAFLPWPLRQRLDSELPGHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATTPVIAQGRIALVLELLSPAQRPLQITRDLAAFWQGAYREVQKEMKGRYPKHVWPDDPANAAPTRRTKKYS
>NZ_CP011602.1|WP_047371786.1|3695509_3696040_+|RNA-2',3'-cyclic-phosphodiesterase
MSESKRLFFAIELPDATRQEVVRWRAEHFPQDAGRPVAAANLHLTLAFLGEVSAEKQRALEILAGRIRQPGFTLQLDDAGQWLRSRVVWLGCRQSPRGLLQLADMLRAQASRSGCWQSPTPFHPHITLLRDASHAVTIPPPGFHWTFPVTEFVLYESQFAAGRLRYTALNRWTLKT
>NZ_CP011602.1|WP_047371787.1|3696052_3696757_+|DNA/RNA-nuclease-SfsA
MEFSPPLRSATLIQRYKRFLADVITPEGETLTIHCPNTGAMTGCATPGDTVWYSTSENTKRKYPHTWELTQTQQGAFICVNTLRANTLTKEAIQLNRLPELLGYSTLKNEVKYGAEGSRIDFLLQADGRRNCYIEVKSVTLAERECGFFPDAVTLRGQKHLRELMSVAASGDRAVILFAVLHSAVEHFSPARHIDEKYARLLKEAQNQGVEILAVKAELSATNMTLRLPLPFTI
>NZ_CP011602.1|WP_001155227.1|3696928_3697384_+|RNA-polymerase-binding-protein-DksA
MQEGQNRKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG
>NZ_CP011602.1|WP_047371788.1|3697510_3698407_+|tRNA-glutamyl-Q(34)-synthetase-GluQRS
MSDSHYIGRFAPSPSGELHFGSLIAALGSYLQARAQQGIWRVRIEDIDPPREVPGAADTILRQLEHYGLCWDGDVLWQSQRHEAYREALDWLHTQGLSYYCTCTRARIQSEGGIYDGHCRRANNGPENAAVRLVQQHPVLHFHDRLRGELYADEKLAREDFIIHRRDGLFAYNLAVVVDDHFQGITEIVRGADLIEPTVRQISLYQQFGWPVPQYVHLPLALNAEGNKLSKQNHAPALPGGDPRPIIIRALQFLNQSATNEWQDLSVDDLLKNAVANWTLADVPIAVDVNTAFSNASR
>NZ_CP011602.1|WP_071845927.1|3698441_3699860_+|polynucleotide-adenylyltransferase-PcnB
MTLPRCTIFTRVANFCRKVLSREESMVVEAIVQPQMTVIPREQHAISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEDTEADRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMRDLEEGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMAISAETAEPIPRLAALINDVPPARLFEESLKLLQAGYGFDTYTLLREYNLFQPLFPTISRFFTENGDSPMERIIAQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQRITQEGGLAYYDAFALAMNDVLDEACRSLAIPKRITSLIRDIWQLQLRMSRRQGKRAWKLMEHPKFRAAYDLLALRAEVENNGELQRLVKWWGEFQVSAPPEQKDMLDDLGDEPAVRRRHRRPRKRAPRREGSA
>NZ_CP011602.1|WP_047371790.1|3699929_3700415_+|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MSPTLCYIAIGSNLASPLEQVKAALDALGEIPQSRVAAVSAFYRTPPLGPQDQPDYLNAAVALETTLEADALLDHTQRIELQQGRARKAERWGPRTLDLDIMLFGDRVIQTPRLTVPHYDMKNRGFMLWPLFEIAPALVFPDGVTLAAALTECAADKPALW
>NZ_CP011602.1|WP_047371791.1|3700532_3701324_+|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MKPTTISWLLKCKQEKKRFATITAYDYSFAKLFAEEGINVMLVGDSLGMTVQGHDSTLPVTVDDIAYHTRAVRRGAPHCLLLADLPFMAYATPELAFENAAAVMRAGANMVKIEGGRWLSDTVKMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRGDAGQTLLDDALALEAAGAQLLVLECVPVELAKRVTQALTIPVIGIGAGNVTDGQILVMHDAFGITGGHIPKFAKNFLSEAGDMRAAVRQYVADVESGIYPGEEHSFH
>NZ_CP011602.1|WP_047371792.1|3701335_3702202_+|pantoate--beta-alanine-ligase
MLIIETLPLLRQHIRRARQEGKRIALVPTMGNLHDGHMTLVEEAKTRADVVVVSIFVNPMQFDRADDLARYPRTLQEDCEKLNKRKVDFVFAPAPNDIYPQGTDTQTYVDVPGISTMLEGASRPGHFRGVSTIVSKLFNLVQPDVACFGEKDYQQLQLIRKMVADMGYDIEIVGVPTVRAKDGLALSSRNGYLTAEQRKIAPALSKIMNAMAAKLQAGERNLDEIIALAEQELNDAGLRADDIQIRDADTLLELAQTSKRAVILMAAWLGQARLIDNKVVELTPVDRG
>NZ_CP011602.1|WP_039078406.1|3702331_3702712_+|aspartate-1-decarboxylase
MIRTMLQGKLHRVKVTQADLHYEGSCAIDQDFLEAAGILEYEAIDIYNVTNGKRFSTYAIAGERGSRIISVNGAAAHCADVGDILIIASYVTMPDEQARSWQPKVAYFDGDNEMKRTAKAVPVQVA

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Crispr_ID: NZ_CP011602_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011602_5

4650334-4650431

Orphan

Consensus_repeat	Method
CGGTAATCATTGGGTTTGTAGCCCCGGTAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011602_5

>merge|NZ_CP011602|5|4650334-4650431|CRISPRCasFinder
CGGTAATCATTGGGTTTGTAGCCCCGGTAAGTGCAGCGCGACCGGGGAATGTCCCGGATGGGGTGGCCGGTAATCATTGGGTTTGTAGCCCCGGTAAG

>NZ_CP011602|5|5|4650334-4650431|CRISPRCasFinder
CGGTAATCATTGGGTTTGTAGCCCCGGTAAG	TGCAGCGCGACCGGGGAATGTCCCGGATGGGGTGGC
CGGTAATCATTGGGTTTGTAGCCCCGGTAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011602.1\|WP_047372501.1\|4653112_4653415_-\|PTS-lactose/cellobiose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|376749
NZ_CP011602.1\|WP_047372502.1\|4653427_4654810_-\|glycoside-hydrolase-family-1-protein	unknown	unknown	gnl\|CDD\|225343
NZ_CP011602.1\|WP_047372505.1\|4656773_4657727_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP011602.1\|WP_039080054.1\|4644951_4645872_+\|ribokinase	unknown	unknown	gnl\|CDD\|274000
NZ_CP011602.1\|WP_047372496.1\|4647290_4648304_+\|aldose-1-epimerase-family-protein	unknown	unknown	gnl\|CDD\|185703
NZ_CP011602.1\|WP_047372507.1\|4659227_4659881_-\|oxygen-insensitive-NAD(P)H-dependent-nitroreductase-NfsB	unknown	unknown	gnl\|CDD\|182929
NZ_CP011602.1\|WP_047372498.1\|4649034_4650216_+\|purine-ribonucleoside-efflux-pump-NepI	unknown	unknown	gnl\|CDD\|182309
NZ_CP011602.1\|WP_047372491.1\|4640509_4641586_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NZ_CP011602.1\|WP_047372503.1\|4654824_4656153_-\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224372
NZ_CP011602.1\|WP_047372494.1\|4643895_4644690_-\|DeoR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182644
NZ_CP011602.1\|WP_047372492.1\|4641898_4643584_+\|acetolactate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|181257
NZ_CP011602.1\|WP_047372497.1\|4648474_4648927_+\|DUF1198-domain-containing-protein	unknown	unknown	gnl\|CDD\|369048
NZ_CP011602.1\|WP_103281084.1\|4641696_4641795_+\|ilvB-operon-leader-peptide-IvbL	unknown	unknown	unknown
NZ_CP011602.1\|WP_047372506.1\|4657770_4658313_-\|RNA-2'-phosphotransferase	unknown	unknown	gnl\|CDD\|179136
NZ_CP011602.1\|WP_047372504.1\|4656164_4656479_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99906
NZ_CP011602.1\|WP_047372495.1\|4645962_4647279_+\|L-fucose:H+-symporter-permease	unknown	unknown	gnl\|CDD\|223809
NZ_CP011602.1\|WP_047372499.1\|4650454_4651360_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP011602.1\|WP_047372500.1\|4651466_4652846_-\|carbohydrate-porin	unknown	unknown	gnl\|CDD\|367007
NZ_CP011602.1\|WP_047372493.1\|4643587_4643878_+\|acetolactate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|236174
NZ_CP011602.1\|WP_139153728.1\|4658505_4658982_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP011602.1\|WP_047372502.1\|4653427_4654810_-\|glycoside-hydrolase-family-1-protein	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	0
NZ_CP011602.1\|WP_047372505.1\|4656773_4657727_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	1.98742e-45
NZ_CP011602.1\|WP_039080054.1\|4644951_4645872_+\|ribokinase	gnl\|CDD\|274000	TIGR02152, Putative_ribokinase, ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not. [Energy metabolism, Sugars].	1.96355e-141
NZ_CP011602.1\|WP_047372496.1\|4647290_4648304_+\|aldose-1-epimerase-family-protein	gnl\|CDD\|185703	cd09269, deoxyribose_mutarotase, deoxyribose mutarotase_like. Salmonella enterica serovar Typhi DeoM (earlier named as DeoX) is a mutarotase with high specificity for deoxyribose. It is encoded by one of four genes beonging to the deoK operon. This operon has also been found in Escherichia coli where it is more common in pathogenic than in commensal strains and is associated with pathogenicity. It has been found on a pathogenicity island from a human blood isolate AL863 and confers the ability to use deoxyribose as a carbon source; deoxyribose is not fermented by non-pathogenic E.coli K-12. Proteins in this family are members of the aldose-1-epimerase superfamily. Aldose 1-epimerases, or mutarotases, are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Site directed mutagenesis of this latter histidine residue renders Salmonella enterica DeoM inactive.	0
NZ_CP011602.1\|WP_047372507.1\|4659227_4659881_-\|oxygen-insensitive-NAD(P)H-dependent-nitroreductase-NfsB	gnl\|CDD\|182929	PRK11053, PRK11053, oxygen-insensitive NAD(P)H nitroreductase.	5.81355e-136
NZ_CP011602.1\|WP_047372498.1\|4649034_4650216_+\|purine-ribonucleoside-efflux-pump-NepI	gnl\|CDD\|182309	PRK10213, nepI, purine ribonucleoside efflux pump NepI.	0
NZ_CP011602.1\|WP_047372491.1\|4640509_4641586_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	1.08004e-46
NZ_CP011602.1\|WP_047372503.1\|4654824_4656153_-\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|224372	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism].	3.77754e-133
NZ_CP011602.1\|WP_047372494.1\|4643895_4644690_-\|DeoR-family-transcriptional-regulator	gnl\|CDD\|182644	PRK10681, PRK10681, DNA-binding transcriptional repressor DeoR; Provisional.	1.89457e-79
NZ_CP011602.1\|WP_047372492.1\|4641898_4643584_+\|acetolactate-synthase-large-subunit	gnl\|CDD\|181257	PRK08155, PRK08155, acetolactate synthase large subunit.	0
NZ_CP011602.1\|WP_047372497.1\|4648474_4648927_+\|DUF1198-domain-containing-protein	gnl\|CDD\|369048	pfam06711, DUF1198, Protein of unknown function (DUF1198). This family consists of several bacterial proteins of around 150 residues in length which are specific to Escherichia coli, Salmonella species and Yersinia pestis. The function of this family is unknown.	1.99573e-80
NZ_CP011602.1\|WP_047372501.1\|4653112_4653415_-\|PTS-lactose/cellobiose-transporter-subunit-IIA	gnl\|CDD\|376749	pfam02255, PTS_IIA, PTS system, Lactose/Cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.	6.55274e-35
NZ_CP011602.1\|WP_047372506.1\|4657770_4658313_-\|RNA-2'-phosphotransferase	gnl\|CDD\|179136	PRK00819, PRK00819, RNA 2'-phosphotransferase; Reviewed.	3.11938e-86
NZ_CP011602.1\|WP_047372504.1\|4656164_4656479_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99906	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	1.10342e-42
NZ_CP011602.1\|WP_047372495.1\|4645962_4647279_+\|L-fucose:H+-symporter-permease	gnl\|CDD\|223809	COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism].	3.97496e-143
NZ_CP011602.1\|WP_047372499.1\|4650454_4651360_-\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	9.44669e-45
NZ_CP011602.1\|WP_047372500.1\|4651466_4652846_-\|carbohydrate-porin	gnl\|CDD\|367007	pfam02264, LamB, LamB porin. Maltoporin (LamB protein) forms a trimeric structure which facilitates the diffusion of maltodextrins across the outer membrane of Gram-negative bacteria. The membrane channel is formed by an antiparallel beta-barrel.	7.42847e-84
NZ_CP011602.1\|WP_047372493.1\|4643587_4643878_+\|acetolactate-synthase-small-subunit	gnl\|CDD\|236174	PRK08178, PRK08178, acetolactate synthase 1 small subunit.	4.54986e-61

>NZ_CP011602.1|WP_047372498.1|4649034_4650216_+|purine-ribonucleoside-efflux-pump-NepI
MMEVQRTQPATGGVSRPNWSAVFAVAFCVACLITVEFLPVSLLTPMAQDLGVSEGVAGQSVTVTAFVAMFASLFITHIIGKTDRRLVVIAFSVLLTLSCLLVSFANSFTLLLLGRACLGLALGGFWAMSASLTMRLVPARTIPKALSVIFGAVSIALVIAAPLGSFLGGIIGWRHVFNGAALMGFVCIGWVWMALPSMPGQTEHHQNMFGLLKRPGVLAGMLAIFMAFAGQFSFFTYIRPIFMTLAGFDVDGLTLVLLSFGIASFVGTSLSSHILKRSVKLALACAPLIIALSALILILWGSNKAVAAGIAIVWGLSFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALDNLGLLSPLVLSGSLMLLTALLVAGKVKVK
>NZ_CP011602.1|WP_047372497.1|4648474_4648927_+|DUF1198-domain-containing-protein
MIWLTLTTLVVVFIIGFRVLTSDSRRAIRRLSERLAITPVPVETMIDQMGKKAGGEFIQYLARPDEAHLQNAAQMLFIWQVFIVDSSEQHLQSWHRILQKARLAAPITDAQVRLALGFLRELEPDVAELNAFQMRYNTLFIPEEGVHWLH
>NZ_CP011602.1|WP_047372496.1|4647290_4648304_+|aldose-1-epimerase-family-protein
MATRLTLWRELFSLQPRTLLANDDFTVTAFRYPSGVEAVRLENARGHLVVLPWLGQMIWDANFDGRDLTMRNMFSQPKPANVIVETYGCFAFHSGLLANGCPSAEDSHALHGEMACATMDEAWLELDGDSLRLAGRYEYVMGFGDHYLAQPSVTLHKASALFDITMAVTNLASVPMPLQYMCHMNYAYVPQATFSQNIPDEALMLRESIPAHVKPTEQWLAFNRRVQQGEATVNALTEPEFYDPEIVFFADRLDRHTDKPEFCMHAPDGTTFVTRFSSEQFNYVTRWILYNGDQQVAAFALPATCRPEGFLAAKRSGSLLSLAPQQTRQFSVTTGIV
>NZ_CP011602.1|WP_047372495.1|4645962_4647279_+|L-fucose:H+-symporter-permease
MNEKNIVQMPDGYLNKTPLFQFILLSCLFPLWGCAAALNDILITQFKSVFSLSNFASALVQSAFYGGYFLIAIPASLVIKKSSYKIAILIGLTLYIVGCSLFFPASHMATYTMFLAAIFAIAIGLSFLETAANTYSSMLGPKSHATLRLNISQTFYPIGAAAGILLGKYLVFSEGESLQKQMTGMTPEQIHNFKVLMLENTLEPYKYMIMVLVVVMALFMFTRFPKCKVAQTETHKRPTAMETLRYLAQNARFRRGIVAQFLYVGMQVAVWSFTIRLALELGDINERDASNFMVYSFACFFIGKFVANILMTRFNPARVLILYSVIGALFLAYVALAPSFSAVYVAVAVSILFGPCWATIYAGTLDTVDNEHTEMAGAVIVMAIVGAAVVPAIQGYVADMFHSLQLSFLVSMLCFVYVGVYFWRESRVRRELTEATAS
>NZ_CP011602.1|WP_039080054.1|4644951_4645872_+|ribokinase
MDIAVIGSNMVDLITYTNQMPKEGETLEAPAFKIGCGGKGANQAVAAAKMNSKVMMLTKVGDDIFADNTIRNLESWGINTTYVEKVPCTSSGVAPIFVNPNSSNSILIIKGANKFLSPEDIDRAAEDLKKCQLIVLQLEVQLETVYHAIEFGKKHGIKVLLNPAPALRELDMTYACKCDFFIPNETELEILTGMPVDTYDNIRTAARSLIDNGLNNIIVTMGEKGALWMTREREVHVPAHKVNAIDTSGAGDAFIGCFAHYYVQGGDVEAAMKKAALFAAFSVTGKGTQSSYPSIEQFNEYLALHE
>NZ_CP011602.1|WP_047372494.1|4643895_4644690_-|DeoR-family-transcriptional-regulator
METKQKERIRRLVELLKKTDRIHLKDAARMLEVSVMTIRRDFSQDDEPLPLALLGGYIVMVNKPTAPAAAPQPTVRTHHRDDLPIAILAAGLVSENDLVFFDNGPEMPLVISMIPDDITFTGICYSHQVFVALTAKPNATAMLCGGTWRAKSDAFYDPNNPSLLDSLNPRKVFISASGVHEHHGVTWFNLDDLPMKRKAMAHGMRKILLARYALFDEVAPASIAPLSGFDVLISDRPLPAEYPAHCRNGFVKVITPDSENEQAR
>NZ_CP011602.1|WP_047372493.1|4643587_4643878_+|acetolactate-synthase-small-subunit
MQQTVSDNVILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPIKDSEHSRIWLLVNDDQRLEQMISQIEKLEDVVQVVRNQSSPGMFNKLAVFFE
>NZ_CP011602.1|WP_047372492.1|4641898_4643584_+|acetolactate-synthase-large-subunit
MASSGTTQTTRFTGAQLIVHLLERQGITTVAGIPGGTVLPLYDALSQSTQIRHVLARHEQGAGFIAQGMARTEGKPAVCMACSGPGATNLVTAIADARLDSIPLVCITGQVPASMIGTDAFQEVDTYGISIPITKHNYLVRNIAELPQVISDAFRIAQSGRPGPVWIDIPKDVQTATIELSELPEPGGRAPAPAFDAKSVQEAAAMINAAQRPVLYLGGGVINAPEQVRALAEKANLPTTMTLMALGMLPKAHPLSLGMLGMHGARSTNFILQESDLLVVLGARFDDRAIGKTEQFCPNAKIIHVDIDKAELGKIKQPHVAIQGDVGEVLAQLLPQIDAQPREAWRGLVAQLQQEFPSAIPQGGDPLTHYGLINAVAACVDDEAIISTDVGQHQMWTAQAYPLNRPRQWLTSGGLGTMGFGLPAAVGAALANPQRKVICFSGDGSLMMNIQEMATAAENNLDVKIILMNNEALGLVHQQQSLFYKQGVFAATYPGMINFMQIAAGFGLQTCDLNNEADPHAALQAIIARPGPALIHVRIDAEEKVYPMVPPGAANTEMVGE
>NZ_CP011602.1|WP_103281084.1|4641696_4641795_+|ilvB-operon-leader-peptide-IvbL
MNASTMTMNLLKTAHNAAVVVVRVVVVVGNAP
>NZ_CP011602.1|WP_047372491.1|4640509_4641586_+|Fic-family-protein
MSWMPERSYNQLPLLPPDTALVETRKVLKACIKARAALAELNTSGELLPDQRLLINLLPMLEAKDSSRIENIVTTSDQLFQYADRIEDADPATKEALRYRTALYKGVNLLQDYPLCSGTAMEICTTLRSIETDVRKTPGTVLRDQNKNVVYTPPDGETLIRDLLSNWEHFIHSDIDLDPLIKMAVSHYQFECIHPFSDGNGRTGRILNILYLMDCGVLSQPILYLSRFILERRSDYYTLLRNVTAKNDWESWVLFMLEAVEDTAKWTTDKIAAMRKLIEETAAWIREKLPKIYTWELNQTLFAQPYCRIENLVDNGIAKRQTASIYLKSLVEIGVLEEKIAGREKLYLNTRLLQELNS
>NZ_CP011602.1|WP_047372499.1|4650454_4651360_-|EamA-family-transporter
MGSTKKGMLYVLIAAILWGSSGVCAQYIMEKSHIAAPWLTMVRLLSGGAVLLILSFFHGDKIFTIVKNRKDTLSLLFFSLFGALIVQLTFLVTIEKSNAATATVLQFLSPTIIVTWFALARKAKPTLAVTAAIATSLIGTLLLVTHGNMTSLSISSEALVWGIASAFSAALYSTYPSKLIARYGTLSIVGWSMFLAGLMLTPFYGNKGGDFVIDGNLVMAFMYLVMVGTALTFSLYLKGAQMIGGSRASILSCAEPLSSALLSVALLGIAFTLPDWLGTLMIVSSVLLISLDSRKRVQAAA
>NZ_CP011602.1|WP_047372500.1|4651466_4652846_-|carbohydrate-porin
MKLNNKLPVALAVAAALCSGSVIAQEFTQEQIDAIVAKAVDKALAERQAKMDAAIDKKADVITEPQSTAQTPDLAIPYGVKFSGYARYGAHYQSGDQKYVGVDGSYNGSSAIGRLGNEGNGGEFQLSKAFKSSHGAIWDVNVMFDHWGDEVNLKKAYAGVTNLLESNPNAYFWAGRDFHQRPQQGINDYFWMNHDGQGAGVKNFDIGGVQFDVATVAAVQSCNPEVEDNGDNPSRITCTGGSGTGDKGNYAVTSKVHGMKVGPLDLEIYANYGFDSKAVESDARLKAWQGGVVLSHTNDSGVNKVIARYSDNADNSVYNKTDDLKTIYASFEGLHKFSRQMQVEYLLAFHDYDNSADKSDNRKNYNAIVRPMYWWNDVHSTWLELGWQKVAYDKGGDNNGWKATLSQNISIDMGPEFRPMLRFYVTGGEVDNKRTARVNGTDDTTLDSFNVGAMWEAWF
>NZ_CP011602.1|WP_047372501.1|4653112_4653415_-|PTS-lactose/cellobiose-transporter-subunit-IIA
MVALEEAVMEIIVNAGQSRSLCFEALRAARAGNFEEAQNLLREADGYSRQAHQMQTKLIEQDAGEARQPMTLIMVHAQDHLMTSLLARELSEEIIQLYQR
>NZ_CP011602.1|WP_047372502.1|4653427_4654810_-|glycoside-hydrolase-family-1-protein
MKYAFPENFWWGSASSAQQTEGESLKGGKSATTWDAWYASQPWRFHQQVGPQDTSTFYQHWREDIALLKALNHNSFRTSISWSRLIPDGIGEVNREAVAFYSTMLSELAEQGIEPFITLFHFDMPMVMQEKGGWENREVVEAFSRYAQICFDLFGHQVKHWFTFNEPIVPVEGGYLYDFHYPNVVDFKRAATVAYNTVLAHASAVRAFRAGHHSGEIGIVLNLTPSYPRSQHPADLKAAHHADLLFNRSFLDPVLRGEYPADLVALLKEYDQLPACHLGDKELIAAGKVDLLGINYYQPRRVKCRDSAVNPESPFMPEWLFDYYEMPGRKMNPWRGWEIYEPGIYDILVNLRDNYGNPRCFISENGMGVENEQRFIENGQINDQYRITFITDHLKWLHKGISEGCNCLGYHMWTFIDNWSWCNAYKNRYGFVQLDLETQKRTVKKSGEWFAATAKNNGFD
>NZ_CP011602.1|WP_047372503.1|4654824_4656153_-|PTS-sugar-transporter-subunit-IIC
MSSLYQSMIGVIEQSITPLAGKLGQQKYVIAIRDGFTAALPFMIIGSFMLVFIFPPFSPETTNGFARAWLDFSTEYRAQLMLPFNLSMGVMTFFISVGIGASLGRQFNLDPVMTGLLAFMAFLLVAAPYHEGQISTQYLSGQGIFTALLTAIYSARVYAWLKQHNITIRLPKEVPTGVARSFEILIPVLVIIGTLHPLNLFIEAQTGMILPQAIMHLLEPLVSASDSLPAILLSVLLCQIFWFAGIHGSLIVTGIMNPFWMANLSANQAALAAGAALPHVYLQGFWDHYLLIGGVGSTLPLAFLLLRSRVTHLRTIGKMGVVPSFFNINEPILFGAPIIMNPMLFIPFVCVPLVNAVLAYAATRMGLLAQVVSLTPWTTPAPIGASWAANWAFSPVVMCVICMVMSALMYLPFLRAYERSLMKTEEQKAQNSAPMAETVGSN
>NZ_CP011602.1|WP_047372504.1|4656164_4656479_-|PTS-sugar-transporter-subunit-IIB
MFRIMLCCSAGMSTSLLVRKMVEEAEQRNLPVEIDAYGVAEFDVQFPRYQVVLLGPQVKYMLNTLSEKAAAVGIPVQPINPMDYGMQRGDKVLDYALSLIEAAH
>NZ_CP011602.1|WP_047372505.1|4656773_4657727_+|LacI-family-DNA-binding-transcriptional-regulator
MSTINDVSRLAGVSKATVSRVLSGSRGVKEASRLAVLKAVEELNYRPNVIAQSLLSQSTGCIGVICAQDNINQTTAYLYALEKHLSQSQKHLLLRFANTKAGVMSALEELTCGLCDDVLIIGARFPLNINDENVILVDCAESDTLNSIQFDHAFAAETACNFLISQGRRQIALIHPDARGNTDQVLLGYKHALENNFLPFNRNLVFMDDTSSSVALQVLLNNATTLNFNALLVADEQEAQRVIPQLQAFNKSVPGDIMVFSLAGSLHLPGVPKIPAIEYSMDAMAARIVAWLNEKTQSVLGSCVVRGDLIIPEMIKR
>NZ_CP011602.1|WP_047372506.1|4657770_4658313_-|RNA-2'-phosphotransferase
MKKTHNEVSKFLSYVLRHQPEAIGLELDSEGWANIDALIAGAAGQGQSLDKQLIEAVVEGSDKKRFALSEDGLRIRAVQGHSTAKVDIAFTEKKPPDILYHGTASRFLTAILAEGLTAQSRQYVHLSADREVAIQVGQRYGAPVVLEINALAMFEQGYPFYQAENGVWLTRQVAVEFISQ
>NZ_CP011602.1|WP_139153728.1|4658505_4658982_-|hypothetical-protein
MPGLPERSPDQAFTPPSGTLPGGAALAGLPERSPNQAFTPPSGTLPGGAALAGANRPDPGSGVYAAIRDTPRRRGTCRCYQNVARIRRLRRHPGHSPAARRLPGLPDVARIRRLRRHPGHSPAARRLPGLPDRSPNQAFTPPSGTLPGGAALAGATRT
>NZ_CP011602.1|WP_047372507.1|4659227_4659881_-|oxygen-insensitive-NAD(P)H-dependent-nitroreductase-NfsB
MTLDDAVIARHTVKAFEGGKTLPQEQIETLLNVLQNSPSSVNSQPWHFVVASTAEGRAAIAKSTTGAFIYNEPKVLNASHVIALCMRTDLDDQHLQKVLAQENADGRFVAEGAQAGQDKSRRSYVDMHRYESRDIPQWMEKQVYLALGGLLLGAAMLGIDATPMEGFDQRALDLSLGLREKGFTSVVLVSLGYRSEGDFNAALPKSRLPREEIFTFI

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Crispr_ID: NZ_CP011602_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011602_6

4700498-4700630

Orphan

Consensus_repeat	Method
CGGTGCAATATTTACCGGATTACAAACGCAAAAAAGCCCCCGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011602_6

>merge|NZ_CP011602|6|4700498-4700630|CRISPRCasFinder
CGGTGCAATATTTACCGGATTACAAACGCAAAAAAGCCCCCGAAACGCGTAGCCCGGATAAGGCGTTTACGCCGCATCCGGGAACCCGACGGTGCAATATTTACCGAATTACAAACGCAAAAAAGCCCCCGAA

>NZ_CP011602|6|6|4700498-4700630|CRISPRCasFinder
CGGTGCAATATTTACCGGATTACAAACGCAAAAAAGCCCCCGAA	ACGCGTAGCCCGGATAAGGCGTTTACGCCGCATCCGGGAACCCGA
CGGTGCAATATTTACCGAATTACAAACGCAAAAAAGCCCCCGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011602.1\|WP_047372544.1\|4698890_4699100_-\|DUF1471-domain-containing-protein	unknown	unknown	gnl\|CDD\|369322
NZ_CP011602.1\|WP_047372546.1\|4701617_4701953_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011602.1\|WP_139153729.1\|4696593_4698504_-\|flagellin	unknown	unknown	gnl\|CDD\|236344
NZ_CP011602.1\|WP_047372551.1\|4705819_4706119_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011602.1\|WP_047372547.1\|4702717_4703005_-\|type-I-addiction-module-toxin,-SymE-family	unknown	unknown	gnl\|CDD\|237442
NZ_CP011602.1\|WP_047372544.1\|4700713_4700923_-\|DUF1471-domain-containing-protein	unknown	unknown	gnl\|CDD\|369322
NZ_CP011602.1\|WP_047372550.1\|4705327_4705711_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011602.1\|WP_052958921.1\|4703448_4704048_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011602.1\|WP_047372544.1\|4702230_4702440_-\|DUF1471-domain-containing-protein	unknown	unknown	gnl\|CDD\|369322
NZ_CP011602.1\|WP_047372548.1\|4703130_4703322_+\|toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|226679
NZ_CP011602.1\|WP_047372545.1\|4701163_4701472_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011602.1\|WP_047372538.1\|4690700_4691219_-\|fimbria-assembly-protein	unknown	unknown	gnl\|CDD\|182153
NZ_CP011602.1\|WP_047372541.1\|4694840_4695533_-\|type-1-fimbria-chaperone-FimC	unknown	unknown	gnl\|CDD\|185117
NZ_CP011602.1\|WP_047372537.1\|4690017_4690650_+\|fimbria-biosynthesis-transcriptional-regulator-FimZ	unknown	unknown	gnl\|CDD\|182154
NZ_CP011602.1\|WP_047372552.1\|4706105_4708040_+\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|214692
NZ_CP011602.1\|WP_052958972.1\|4688779_4689409_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197715
NZ_CP011602.1\|WP_047372539.1\|4691227_4692235_-\|type-1-fimbrin-D-mannose-specific-adhesin-FimH	unknown	unknown	gnl\|CDD\|237921
NZ_CP011602.1\|WP_047372542.1\|4695604_4696156_-\|type-1-fimbrial-major-subunit-FimA	unknown	unknown	gnl\|CDD\|237920
NZ_CP011602.1\|WP_047372535.1\|4687495_4688284_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_CP011602.1\|WP_120785428.1\|4692239_4694825_-\|fimbrial-biogenesis-usher-protein	unknown	unknown	gnl\|CDD\|185120

Protein	Function_ID	Function_description	E-value
NZ_CP011602.1\|WP_047372544.1\|4698890_4699100_-\|DUF1471-domain-containing-protein	gnl\|CDD\|369322	pfam07338, DUF1471, Protein of unknown function (DUF1471). This family consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some members of this family are annotated as ydgH precursors and contain two copies of this region, one at the N-terminus and the other at the C-terminus. The function of this family is unknown.	0.00406413
NZ_CP011602.1\|WP_139153729.1\|4696593_4698504_-\|flagellin	gnl\|CDD\|236344	PRK08869, PRK08869, polar flagellin E.	5.7702e-49
NZ_CP011602.1\|WP_047372547.1\|4702717_4703005_-\|type-I-addiction-module-toxin,-SymE-family	gnl\|CDD\|237442	PRK13605, PRK13605, endoribonuclease SymE; Provisional.	4.71839e-18
NZ_CP011602.1\|WP_047372544.1\|4700713_4700923_-\|DUF1471-domain-containing-protein	gnl\|CDD\|369322	pfam07338, DUF1471, Protein of unknown function (DUF1471). This family consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some members of this family are annotated as ydgH precursors and contain two copies of this region, one at the N-terminus and the other at the C-terminus. The function of this family is unknown.	0.00406413
NZ_CP011602.1\|WP_047372544.1\|4702230_4702440_-\|DUF1471-domain-containing-protein	gnl\|CDD\|369322	pfam07338, DUF1471, Protein of unknown function (DUF1471). This family consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some members of this family are annotated as ydgH precursors and contain two copies of this region, one at the N-terminus and the other at the C-terminus. The function of this family is unknown.	0.00406413
NZ_CP011602.1\|WP_047372548.1\|4703130_4703322_+\|toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|226679	COG4226, HicB, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	0.000134355
NZ_CP011602.1\|WP_047372538.1\|4690700_4691219_-\|fimbria-assembly-protein	gnl\|CDD\|182153	PRK09934, PRK09934, fimbriae assembly protein.	1.66023e-85
NZ_CP011602.1\|WP_047372541.1\|4694840_4695533_-\|type-1-fimbria-chaperone-FimC	gnl\|CDD\|185117	PRK15195, PRK15195, molecular chaperone FimC.	5.26002e-129
NZ_CP011602.1\|WP_047372537.1\|4690017_4690650_+\|fimbria-biosynthesis-transcriptional-regulator-FimZ	gnl\|CDD\|182154	PRK09935, PRK09935, fimbriae biosynthesis transcriptional regulator FimZ.	1.16117e-127
NZ_CP011602.1\|WP_047372552.1\|4706105_4708040_+\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|214692	smart00487, DEXDc, DEAD-like helicases superfamily.	0.00261623
NZ_CP011602.1\|WP_052958972.1\|4688779_4689409_+\|hypothetical-protein	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	5.05465e-05
NZ_CP011602.1\|WP_047372539.1\|4691227_4692235_-\|type-1-fimbrin-D-mannose-specific-adhesin-FimH	gnl\|CDD\|237921	PRK15199, fimH, type 1 fimbrin D-mannose specific adhesin FimH.	0
NZ_CP011602.1\|WP_047372542.1\|4695604_4696156_-\|type-1-fimbrial-major-subunit-FimA	gnl\|CDD\|237920	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA.	3.20308e-81
NZ_CP011602.1\|WP_047372535.1\|4687495_4688284_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	3.13941e-67
NZ_CP011602.1\|WP_120785428.1\|4692239_4694825_-\|fimbrial-biogenesis-usher-protein	gnl\|CDD\|185120	PRK15198, PRK15198, outer membrane usher protein FimD.	0

>NZ_CP011602.1|WP_047372544.1|4698890_4699100_-|DUF1471-domain-containing-protein
MKSIKTFVAVAALSMMSFGAFAQSVSASASTIDGAEAKIAAQAQQEGASYKITEATVNNVVHMTAELSK
>NZ_CP011602.1|WP_139153729.1|4696593_4698504_-|flagellin
MSKVMISLKTNVSALNVQKQSAKSSSALETAIRRLSSGMRINSASDNAAGQAISNRLTSQQNGLEQAQRNAGDALSMIDTAESALNEVNNRLQRIRELTVQGLNGTYSQTDSDAIQAEINLNLKAIDEINRTSQFNGISLLNGSAGKVGFQVGANDNQKIDLNLSAPGMSVAEIGLKDLVISGISNNVVDTNGYTSTAYNISLNSSSVTVSYTAAGITSPQLVRSTANSQYYIQGTDTNGNAVFLPASVSADWYTQTGTGTVSVSASSATKLYSDVSQIPARAITPLTMVDTTGTTLSGTTLTHANGQYYIEQDDFYYPATLSFGTSGAVTATMTSTSGLLDTDFATPPAQVTTTPAIDTSTTATTFTDANGSTVSGRLVKSGSQYMMEMSDGSGSFRYYPATVNATTDGTTTALHVIATSSTSQNGFTAVTSVSGRSHVTLDPAKVDVTYTDADGNTFNDVLRLDSDGKYYMDLPASTTYGAKTATLALQNDLTNTFYLKTLNGVGAVQIYYRTALGSSTDASTNFTTLSVWETGAEIRLRHPENPLAAIDNAISQVDSRRTELGGVANRLTSVKNAQGNAAATTAATRSRIEDADYAAEVSAMTRAQILQQSSMQVLAKANMTPEIVLSLLKGG
>NZ_CP011602.1|WP_047372542.1|4695604_4696156_-|type-1-fimbrial-major-subunit-FimA
MNMKLMSASVATGLMLLAGAAQADVVTVNGGTVHFEGKLINAACSVSTKSANQTVQLGQYRTAMFTKVGDTSALIPFTIVLNDCDPSVAQTAAVSFSGQADAVNNSLLAIASSENTSTAKGVGIEILDEASNPLKPDGVVTSVAHTLFEGTNTLNFSARYKATAATTSPGQANADATFIMKYE
>NZ_CP011602.1|WP_047372541.1|4694840_4695533_-|type-1-fimbria-chaperone-FimC
MNHYLKNTFGALFFAMLSLPVYADGGISLGATRIIYPASAQQTSLAITNSGEKERFLVNSWVENNKGEKEKAFIVTPPLFVSEPKSEHTLRIIYAGQPLPADRESIFWMNVKAIPSVDKDSLEGKNVLQLAVLSRIKLFVRPAKLPGSPETAPAQLAFSRAGNNLVITNPSPYYVTLVNVRMGTQKLDNVMVAPKNRAQVALPANLSGGVTFQTVNDYGAVTPHLTASLH
>NZ_CP011602.1|WP_120785428.1|4692239_4694825_-|fimbrial-biogenesis-usher-protein
MMNTLASFSLCRARWVVLAALYPAVGSAGSYFNPAFLSSDAANVADLSRFEKGNNQPPGVYRVDVWRNDEFFSSQDVRFVVKPDHTGADASGGLTPCFNSEWLSRIGVNLQAFPALATSKDDCLDIPATIPGATLTYHFASQRLDVNIPQAAMHNSARGYIPPEEWEEGITAALLNYNFTGSRGTDSDNYFLSLQSGLNYGPWRLRNDSAWRYSHSNGDVARSWSNIGTWVQRAIVPLKSELVMGDSNTNNTVFDSLGFRGARLSSSDSMYPDSLQGYAPTVRGIARTPAKLVIRQNGYVIYQSFISAGAFTINDLSPTSSSGDLDVTIEEKDGSQQRYTVPYSTVPLLQREGRMKYDVVVGKYRSGNTQQSQPSFGQATLVAGLPGNYTAYTGTQLASRYSAFVLGAGKNLGDWGAVSFDVTHARSTLADSSTHEGQSLRFLYAKSLNRFGTNFQLLGYRYSTRGFYTLSDVAYRNMESYEYEEDSDGEWHKTPVLKSWHNLYNSKKGRFQANISQNLGNYGSVYLSGSQQTYWNTHDADTWYQLGYASSWRGMSYSFTGSWNKSQATGGKDKIVAFNLTVPFSVFSGQRFNRDSALDRAWASVSANRNSNGQNNWRTGVGGTLLEERNLSYSVNQGRSNINGYSGSASANWQAAYGTLGLGYNYDRDQHDYNWQLAGGIIGHADGVTFSQPPGETNVLIKAPGARGVRIENQTGVKTDWRGYAVIPYATVYRYNRIALDTLSMDNHTDVENNVSRVVPTQGALVRASFATRIGVRALLTVKRGDRPVPFGAIVRETGSGLTSMVGEDGQIYLSGLPLAGELLVQWGDDARSRCTARYTLPEQSLRQAVAQATLTCEQKG
>NZ_CP011602.1|WP_047372539.1|4691227_4692235_-|type-1-fimbrin-D-mannose-specific-adhesin-FimH
MNRNAMLAIGAAALAISGSASATICYNRQGAATDIYYDLSNTFNSSNNKPGQIVTLPDKSGWVGVEAICPAGTTVNYTYRSYVSERDPESIEGGYKYLRINDYLQGAMQITDSAAGVFYPPQNYIRMGVDGNVSNQKPFQVNDSKLILKLKVTRPFISMVPIPRQTMLTVYVTTTTADALTTPVYTISYSGKIEVPQNCEINAGQVVEFDFGNIGASLFSRAGPGGRPETARPQTRRVAIKCTNIDAQAYLSMRLEAEDHQDNMMISDNKDVGFMIAEEGGNILTPNTLASKIRFQLDDNAQASVGIRAWPVSVTGNKPAEGPFSARGYLRVDFD
>NZ_CP011602.1|WP_047372538.1|4690700_4691219_-|fimbria-assembly-protein
MVNLQRYLMLLPFVLSPAALAITPLGEINIELRGNVVDFTCAVEAADSNKTVALGTWPTKQLRTAGSTTQPVPFTLHLVDCPPGSASITFSGAPATDNALLALSDSEMAKKVAIELRDSDRKRLPLQSASPPVPIDDEGNATLHFYANYIALADTPQPGQANAEATFTINYY
>NZ_CP011602.1|WP_047372537.1|4690017_4690650_+|fimbria-biosynthesis-transcriptional-regulator-FimZ
MKPASVIILDEHPIVRMSIDVLLAKNKDVQVVLKTDDSRTALDYIRANPVDLVILDIELPKTDGFSLLRRMKAINEKINVLFLSAKSESFYAGRAIRAGANGFVSKRKDLCDIYNAVEMILAGYSFFPSDTINLINHPARRKGEQWDMPLSNREVTVLRYLANGLSNKEIADHLLLSNKTISAHKSNIFSKLGVQTIVELIDYAKSHELL
>NZ_CP011602.1|WP_052958972.1|4688779_4689409_+|hypothetical-protein
MIDGLEQLSQQLSYTLPESIISQMLISTDSFLAYAWSRHLFIGKRTAVFPSLDAARYRLGDSSLSSLIVDMESLTSSRFAVLEALRGHCLAKDGLRTYLLVSHPDPPMCAFFCAAGPFELLKRNQPVRQLREALLAPPLPETPPRFSPTEWQLLTRLAQGHTLKETARQLGMPYHRAVYRVTTLLQRLGLSTRLHLTQLLHRLTLDVNH
>NZ_CP011602.1|WP_047372535.1|4687495_4688284_-|IclR-family-transcriptional-regulator
MGGKGCNSLIRAEKILTYIAYVGAASFMELLREFQYPKSSLLNLLNVMVDCGFLTKSERNQYSLGIKNYELGCQALHRKNIFEVTKRPMQELSQKSGLVCHLGAIEDCYAIYLDKVEGPDTVPTKKSWIGKKLELHITALGKALLAWKPREEMDYFLNALTLTPHTRNTFTDKKLFWEELQKTRLRGWAIDNEESTYGAVCLSMPVFNMYNRVNYAISLSGDPVVYSGNKIDGYLELLRQCAGQISYGLGYRSESENLRKGN
>NZ_CP011602.1|WP_047372544.1|4700713_4700923_-|DUF1471-domain-containing-protein
MKSIKTFVAVAALSMMSFGAFAQSVSASASTIDGAEAKIAAQAQQEGASYKITEATVNNVVHMTAELSK
>NZ_CP011602.1|WP_047372545.1|4701163_4701472_-|hypothetical-protein
MSNTNTPAWKFNDPPNVAVIARKNIFTHGDVIVYVTHDSDDGCWQFHTAQPEAVDINDACLVSLQSIVEHDPTIEQLAALPLGWCASRSSVHQGWEMGPLAE
>NZ_CP011602.1|WP_047372546.1|4701617_4701953_-|hypothetical-protein
MKPVIALVASLLFAISFQSFAAEKKSAETCKPQAISEAKKLLAFYRDNDDRAEIDDHVIPLAKRQNPQNTSQYFDVLQVWGNIYKGKYRMRFIFLNDCTLMGEEILEYVNP
>NZ_CP011602.1|WP_047372544.1|4702230_4702440_-|DUF1471-domain-containing-protein
MKSIKTFVAVAALSMMSFGAFAQSVSASASTIDGAEAKIAAQAQQEGASYKITEATVNNVVHMTAELSK
>NZ_CP011602.1|WP_047372547.1|4702717_4703005_-|type-I-addiction-module-toxin,-SymE-family
MADLHSNLDFTPAGTERQLIVGYRPHHGDTSTPSLTLSGKWLREAGFDTGRQVSVKVMDGCIVLMTDSDKEQMLSEELKQAKRALKEIKGALAAA
>NZ_CP011602.1|WP_047372548.1|4703130_4703322_+|toxin-antitoxin-system-HicB-family-antitoxin
MSIISREKKPKGGGQSPQFKMRIDPALKAQLDAAAAEEGVSLASWLKELAREALRKKGIEPKG
>NZ_CP011602.1|WP_052958921.1|4703448_4704048_-|hypothetical-protein
MIELINSTEFWSGLIGAVIGGLFTLWGTLIEGNRERKTKEDDLLTKKINILKGVKTEIELITALYNQRMNSHINNYKDGQILDVYFLITQNNFVFYESNAEFISELDENVLKDVVRFYITAKSLIDTFNTNNTNINKISEIAIKIAEEPMNESYRGLLAAYTNIASQYAPMIIEINNETLRCQQQVILSINREIEKLEK
>NZ_CP011602.1|WP_047372550.1|4705327_4705711_+|hypothetical-protein
MRETVSLYGKGEFSQGSVFSGLETSAGNPCMGIIITARCDLEHRKLNKIVCLPVYRFVDWMTLYGDDDIFEKSKSDVIQQLDALLVKYGLSYESFRVFKSDEVIRILTEKKIKKTDQDKIEQFSNFL
>NZ_CP011602.1|WP_047372551.1|4705819_4706119_+|hypothetical-protein
MGDTSEAYIIDLGEPITLSMQVIVDIDKTLYFQKYNRSKNTLYKNLHIKESEEAKFFSTLNSPYTEHLLQRFSQFYSRIGTEDISSDTLSIIKDIYEKR
>NZ_CP011602.1|WP_047372552.1|4706105_4708040_+|DEAD/DEAH-box-helicase-family-protein
MKSVDYLGMTEDAAKTIISNRELQSYDFERAQDLVSIFLGEGNKKSAESLGLEMVESKSGYILVTPEEKFSSEKNTLTIDFECLDFRIVNHNLIVAAIQKTLRFCVKYWGNLNFNNNEYIPPSSSKAIVFPFPMNSGAPYRITLERQPSEKRMSRRFPGKHLLAYRFGTNGGDGTKEEYPSTNFNKAIEILFSHESYQKNKDEEKRLQTSFITADLTEEKVDTSSILGFSDPFKKLSSKQLTFIKTVYNEPARIEGPAGSGKTICMVLKILYWLNEVNKQGKKVKFLFIAPSTEMVNNVHYFFEVLNGSIESYDENLLEQVEIKTLQDVCTQFLKQDIHETELLDEDTFESKNIQLLHLVEIVSDEKNTLEQKKGFISSELYKFINDEDEFHIADMLRHEISVVIKGRSDENLDSYKDVKRPSYGLPIQNKNDRSFIFDIFNKYSDILNNLSQFDVDDVAISALSKLDSPIWRRRRKNDGFDAIFIDEVHLFNMNELSLVHYLTKDSSLSPISYAIDLAQALGDVAWNDVDFNNSVGIKNETEQVKLNAVFRSSPLITDLAFSITSHGANIFTNFDNPISEAPYVYNDQLEDEHPKYYLIDSSSNIYSKAFELADTIRDKLGARKHQVAIIFFDRFTYSESPRV

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Crispr_ID: NZ_CP011602_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011602_7

4932004-4932085

Orphan

Consensus_repeat	Method
GCTGCGGGCTGGCTTTTCCCCCTCTCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011602_7

>merge|NZ_CP011602|7|4932004-4932085|CRISPRCasFinder
GCTGCGGGCTGGCTTTTCCCCCTCTCCCACAGGGAGAGGGAACCGATCGCGCGGGCTGCGGGCTGGCTTTTCACCCTCTCCC

>NZ_CP011602|7|7|4932004-4932085|CRISPRCasFinder
GCTGCGGGCTGGCTTTTCCCCCTCTCCC	ACAGGGAGAGGGAACCGATCGCGCGG
GCTGCGGGCTGGCTTTTCACCCTCTCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011602.1\|WP_047372716.1\|4933190_4934078_-\|N-carbamoylputrescine-amidase	unknown	unknown	gnl\|CDD\|274553
NZ_CP011602.1\|WP_047372707.1\|4923081_4923981_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176161
NZ_CP011602.1\|WP_047372715.1\|4932108_4933191_-\|agmatine-deiminase	unknown	unknown	gnl\|CDD\|184135
NZ_CP011602.1\|WP_047372717.1\|4934220_4935117_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP011602.1\|WP_047372708.1\|4924099_4924858_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187620
NZ_CP011602.1\|WP_047372711.1\|4926103_4927696_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376152
NZ_CP011602.1\|WP_120785431.1\|4939249_4939618_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181635
NZ_CP011602.1\|WP_047372712.1\|4927710_4929360_-\|alpha,alpha-trehalase	unknown	unknown	gnl\|CDD\|183934
NZ_CP011602.1\|WP_047372713.1\|4929613_4930519_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182183
NZ_CP011602.1\|WP_047372714.1\|4930681_4931443_+\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_CP011602.1\|WP_047372706.1\|4921984_4923028_-\|inner-membrane-protein-YhjD	unknown	unknown	gnl\|CDD\|188082
NZ_CP011602.1\|WP_047372718.1\|4935142_4935559_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|227786
NZ_CP011602.1\|WP_082137101.1\|4937632_4938544_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|366088
NZ_CP011602.1\|WP_047373453.1\|4931525_4931930_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
NZ_CP011602.1\|WP_167337909.1\|4940192_4940903_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|366088
NZ_CP011602.1\|WP_071845963.1\|4938834_4939194_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP011602.1\|WP_047372710.1\|4925415_4925952_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP011602.1\|WP_047372720.1\|4936129_4936888_-\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|181635
NZ_CP011602.1\|WP_047372719.1\|4935555_4935867_-\|type-II-toxin-antitoxin-system-HigB-family-toxin	unknown	unknown	gnl\|CDD\|227025
NZ_CP011602.1\|WP_047372709.1\|4924949_4925348_-\|YdeI-family-stress-tolerance-OB-fold-protein	unknown	unknown	gnl\|CDD\|182212

Protein	Function_ID	Function_description	E-value
NZ_CP011602.1\|WP_047372716.1\|4933190_4934078_-\|N-carbamoylputrescine-amidase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP011602.1\|WP_047372707.1\|4923081_4923981_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176161	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 3. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	6.55581e-107
NZ_CP011602.1\|WP_047372715.1\|4932108_4933191_-\|agmatine-deiminase	gnl\|CDD\|184135	PRK13551, PRK13551, agmatine deiminase; Provisional.	0
NZ_CP011602.1\|WP_047372717.1\|4934220_4935117_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	6.60015e-33
NZ_CP011602.1\|WP_047372708.1\|4924099_4924858_+\|SDR-family-oxidoreductase	gnl\|CDD\|187620	cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs. 1,3,6,8-tetrahydroxynaphthalene reductase (4HNR) of Magnaporthe grisea and the related 1,3,8-trihydroxynaphthalene reductase (3HNR) are typical members of the SDR family containing the canonical glycine rich NAD(P)-binding site and active site tetrad, and function in fungal melanin biosynthesis. This subgroup also includes an SDR from Norway spruce that may function to protect against both biotic and abitoic stress. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	8.68322e-69
NZ_CP011602.1\|WP_047372711.1\|4926103_4927696_+\|hypothetical-protein	gnl\|CDD\|376152	pfam18729, HEPN_STY4199, STY4199-like HEPN. STY4199-like HEPN nuclease domain.	0
NZ_CP011602.1\|WP_120785431.1\|4939249_4939618_-\|hypothetical-protein	gnl\|CDD\|181635	PRK09065, PRK09065, glutamine amidotransferase; Provisional.	1.04389e-42
NZ_CP011602.1\|WP_047372712.1\|4927710_4929360_-\|alpha,alpha-trehalase	gnl\|CDD\|183934	PRK13270, treF, alpha,alpha-trehalase TreF.	0
NZ_CP011602.1\|WP_047372713.1\|4929613_4930519_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182183	PRK09986, PRK09986, LysR family transcriptional regulator.	6.80699e-65
NZ_CP011602.1\|WP_047372714.1\|4930681_4931443_+\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	2.32973e-31
NZ_CP011602.1\|WP_047372706.1\|4921984_4923028_-\|inner-membrane-protein-YhjD	gnl\|CDD\|188082	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD. This family, including YhjD in E. coli, is a conserved inner membrane protein homologous YihY, which in turn was incorrectly assigned to be ribonuclease BN. This, any suggestion this family is similar to ribonucleases should be removed. [Transcription, Degradation of RNA].	2.19949e-137
NZ_CP011602.1\|WP_047372718.1\|4935142_4935559_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|227786	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription].	2.38072e-26
NZ_CP011602.1\|WP_082137101.1\|4937632_4938544_+\|fimbrial-protein	gnl\|CDD\|366088	pfam00419, Fimbrial, Fimbrial protein.	2.6985e-13
NZ_CP011602.1\|WP_047373453.1\|4931525_4931930_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	8.798e-11
NZ_CP011602.1\|WP_167337909.1\|4940192_4940903_+\|fimbrial-protein	gnl\|CDD\|366088	pfam00419, Fimbrial, Fimbrial protein.	5.99276e-13
NZ_CP011602.1\|WP_071845963.1\|4938834_4939194_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	4.61329e-09
NZ_CP011602.1\|WP_047372710.1\|4925415_4925952_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	2.63664e-29
NZ_CP011602.1\|WP_047372720.1\|4936129_4936888_-\|glutamine-amidotransferase	gnl\|CDD\|181635	PRK09065, PRK09065, glutamine amidotransferase; Provisional.	2.11563e-113
NZ_CP011602.1\|WP_047372719.1\|4935555_4935867_-\|type-II-toxin-antitoxin-system-HigB-family-toxin	gnl\|CDD\|227025	COG4680, COG4680, Uncharacterized protein conserved in bacteria [Function unknown].	1.01001e-25
NZ_CP011602.1\|WP_047372709.1\|4924949_4925348_-\|YdeI-family-stress-tolerance-OB-fold-protein	gnl\|CDD\|182212	PRK10053, PRK10053, YdeI family stress tolerance OB fold protein.	7.88554e-62

>NZ_CP011602.1|WP_047373453.1|4931525_4931930_+|GNAT-family-N-acetyltransferase
MKFTTITLDDCLDIRHPVLWPQLPREASRVEGDDDAQHFGVLHNGKPVSCLSVFMLDASVCQIRKFATLKMYQRQGFGRFLFQSVLEKMAEAGVHEVCLDARIGAVNFYTKFGFRPEGEHFFKKGVEYVRMARR
>NZ_CP011602.1|WP_047372714.1|4930681_4931443_+|sulfite-exporter-TauE/SafE-family-protein
MSSELLVLLPVAFIAGIINAAVGGGGLITMPTFYSTLPHFTPAEIMGIDKCSSVMGHLMSIKQFTARLRLPWTLILPTAISAVIGAYTGIRLLDFMPSDWMRPIVIVVLAIMLAYTWFKPQFGHSDTSREPTRGDLAKGILLGFAIGFYDGFIGPGTGSFLLFLFIRFFHFDFLRATACAKVVNFGTNFSTLFFLIPHGLIHYDIAIPLGISAICGSLVGVRVALQGGNVWIRRLFLILAATLLIKLLWETLH
>NZ_CP011602.1|WP_047372713.1|4929613_4930519_-|LysR-family-transcriptional-regulator
MEFRHLRYFLAVAEELHFTRAAEKLNIGQPPLSQQIQALEQELGVLLFNRTRRKVALTEAGEHFVIKAREMLRLSSDLPAELQAIAQGKSGELRIGFTTTGLLVDELSEPLKAFRRQFPAVRVTLSEMYSQQQFTALLNEDIDVGYIRVTPGTTRDGLNIRVLRRDQLCVVLPDDHPKATCKTLTISDVKEEPFIFYPDTAGASVPDKVRRMCQKSGFTPYVVQEAAEVLTHIGLVGAGVGVSVLPRPIDQLKPKGVKFIPLAEDDAELCMAIVTRKSENNPRTLNFLRLLTGVNAGKSPG
>NZ_CP011602.1|WP_047372712.1|4927710_4929360_-|alpha,alpha-trehalase
MFNQKLHSAESVEFGIAEEPRYEIDPCELKLAEMIDAEPEPEMIEGLPASDALTPADRYLELFEHVQSSRIFADSKTFPDCAPKMDPLDILIRYRKIKRKPDFDLRLFVQAHFWMPETYGSEYVSDPENSLKEHIDQLWPVLTREPQDHIPWSSLLALPQAYIVPGGRFSETYYWDSYFTMLGLAESGRHDMLKCMADNFAWMIERYGHIPNGNRTYYLSRSQPPVFALMVELFEEDGVRGARRYLDHLLMEYDFWMDGAESLLPNQAYRHAVRMPDGSLLNRYWDDRDTPRDESWLEDVETAKHSSRPANEVYRDLRAGAASGWDYSSRWLRDANRLASIRTTQFIPIDLNAFLFKLESAIANIAGLKGEREREAQFRLKASDRRAAVNRYLWDEEKGCYRDYDWRRGEMALFSAASLVPLYVGMATHEQADKLAEATRTRLMTPGGILATEYETGEQWDKPNGWAPLQWMAIQGFKLYGNDALGDEIAHNWLRTVNHFYQRHHKLIEKYHIASSTPREGGGGEYPLQDGFGWTNGVVRRLIGLYGEP
>NZ_CP011602.1|WP_047372711.1|4926103_4927696_+|hypothetical-protein
MTHISSQSLGEQFEQCTGIIRQASIEILMLLNVHFDEGKDPRWFLEQLDIARLSLGGWGAVAKRLRLNDSELTQFTLQLRHLQQLVPYYEKGQNVTENQLIVALRFVRMLEHLRAKQPLLTYATTLNADKEGQLQGLKQLRALELMLKSLVTNAWPDALRLSNHLKTRFGADCVRRWLKIGDRNDVLSGMLFSELALLLIDKKEFSQHYARLFNDSPVLSLFLEPRKTLQTFLDDIRQIRSAVVAGQPLTSNQLMLLDNYFPQIAGPVQRAWDDGRIQINPASLLEEAEDDLDTFWEQARKKDRAAGGDAMQIRDGIERPDKRAARSREEREQILTKALWGAVGVAVLVIVAGAFWLFSDASSVSAPLADQGRITVPISQDKEKATPKEELTKMGISRDEGNFRSAIDRNDTRVVSLFLRTGMSWKLSWTEQAMANDYTDVLEMLLRYRLQMDENRPCRRFIENMAHEMSSGTKLTSLRKNYLQAFCTSEPVVRRQRYEMEQAQLRYEAAPDDNSKKWADIQSAIYDAID
>NZ_CP011602.1|WP_047372710.1|4925415_4925952_-|GNAT-family-N-acetyltransferase
MPTLITPRLICTPITPQDWPFFLALQQDRQVMRYVAEDRPPEAIREAFDTRLPAWSPGSEHWLCLVVRDIATQTPLGVTGYRHHEADCAEVGFLFAVQAQGKGYGLESLQAVCRYAFAEGGIRRLVATVTAGNDASRRLLEKVGFVQEGELREAFWLAGHWHNDWLFGLLRHEYPESR
>NZ_CP011602.1|WP_047372709.1|4924949_4925348_-|YdeI-family-stress-tolerance-OB-fold-protein
MKKILLITSLTALFSMAAFAQDATGLKTDKAPPPPHKMEEGYRGMEDARSMTIQQAKTMHDGASVSLKGYLVKKTGEDLYQFRDKTGQIDVYIPMAIFDGKNVSPDELVGISGSLDAKQKPARIKVSHFQKQ
>NZ_CP011602.1|WP_047372708.1|4924099_4924858_+|SDR-family-oxidoreductase
MTQRIALVTGGSRGLGKNAALKLAERGTAVILTYNNNQQAADEVVAEIAAKGVKAVALQLNVGDVASFEAFALNVQHQLKDVWNRDTFDYLLNNAGVGIAVPFAEASEAQFDELMNIHFKGPFFLTQRLLPLLADGGRILNVSSGLARFALPGYATYGAMKGAMEVLTRYQAKELGARGISVNIIAPGAIETDFRGGEVRDNPQINKHIAGQTALGRVGKPDDIGGAMAALLSDDLAWMNAQRVEVSGGMFL
>NZ_CP011602.1|WP_047372707.1|4923081_4923981_-|LysR-family-transcriptional-regulator
MDKIYAMQLFIRVAELESFSRAADSLGLPKGSVSRQIQTLENHLGTHLLHRTTRRVQLTQDGMVYYERAKDLLANMDELDGLFLHDPSSISGRLRVDMPVAVAKNLVIPRLPAFLQQYPGIELELSSSDRLVDIIREGFDCVVRVGTLKDSGLIARPLGKLSIINCASPDYLARFGYPESLDDLSSHAVVHYALNLGARPQGFEVCLDKQTTWVKTGGILTVNSTETYHAACLAGLGIIQVPRIGVREALRAGKLVEILPQYRAEPMPVSLIYPHRRNLSRRVHLFMEWLAGVMKDYVD
>NZ_CP011602.1|WP_047372706.1|4921984_4923028_-|inner-membrane-protein-YhjD
MTPENSEKRPTQDLDYEPVRKMDTSGTSTKDTTPNADNNAARSTLETVTHVAKKVQRRPMIAHLIRATERFNDRMGNQFGAAITYFSFLSMIPIMMVSFAAAGFVLASHPTLLQDIFNKILTNVSDPTLATTLKNTINTAVQQRTTVGIVGLAIALYSGINWMGNLREAIRAQSRDVWERTPQDQEKIWLKYFRDFISLIGLLVALIVTLSITSVAGSAQEMIISALYLDNIEWLKPAWRLIGLAISVFANYLLFFWIFWRLPRHRPRRKALIRGTFIAAIGFEVIKIVMTYTLPSLVKSPSGAAFGSVLGLMAFFYFFARLTLFCAAWIATAHYKDDPRMPGKSHR
>NZ_CP011602.1|WP_047372715.1|4932108_4933191_-|agmatine-deiminase
MSTLTTPHQDGFAMPAEWAPHQAVWMCWPYRTDNWRANGAPAQQAFADVAEAISRKTPVIMAVPHAEMEKARKTMPASVTLVEMESDDAWMRDTGPTVVRNPAGEIRAVSWTFNAWGGLLGGLYESWDKDQLVAGQVAQYHRMPCYHTDLILEGGSIHVDGEGTLMTTAECLLNPNRNPHLSQAEIEQQLREYLGVETFIWLPEGVFNDETDGHIDNMCCFVRPGEVALHWTDDENDPQYARSVAAMNILENTTDARGRKLKIWKVPSPQPLYASAEETCDVEKGTAIARTEGNRLAGSYVNYLVSNDHIIYPLLDPATDAQAEVLFRQMYPDFLITGVPAREILLGGGNIHCITQQIPR
>NZ_CP011602.1|WP_047372716.1|4933190_4934078_-|N-carbamoylputrescine-amidase
MRNVTVAATQMACTWELEKNVANAERLVREAHSKGAQVILIQELFAAPYFCIDQSPEHYALAQEVATSPLIKHFSALAKELEVVLPLSLFEKHNNAYYNSLVMIDADGTVMETYRKTHIPNGPAYQEKQFFIPGDTGFKVWNTRYAKIGVGICWDQWFPETARCLALDGAEIIFYPTAIGSEPAYPDIDSQPHWTRVQQGHAAANLVPVIASNRIGTEASKYIEGLEMTFYGSSFIADQTGELVAQANKTDEAVLVHTFDLDAIAAQRASWGLFRDRRPNMYGTLATSDGSVRSK
>NZ_CP011602.1|WP_047372717.1|4934220_4935117_+|LysR-family-transcriptional-regulator
MMDLNLLRLVPILAKEKNVTRAARKANITQSAFSHALNRLREQLNDEMFVRTRNGMEPTPYAASMIPVIENALSKLEAATRGKGNFSPAKDPHTFYIGAVDYFEFMYMPALTAKFKASAPNVRLSVDILSETIKFERVERGQLDAFIGVDNLQYIPQYFNKHPLISDHYVAIASLARSDLPEQLTLKHLVTEAQIHLPAVSSGADHIDSWLLAQHLYRPLTTVVQSYAVGGRVAVASGYLMCVPYRIAKELAAMMPLRIMDLPEGSPSYDLILLTHRLFDYQSALQWLIHELKTVEIH
>NZ_CP011602.1|WP_047372718.1|4935142_4935559_-|helix-turn-helix-domain-containing-protein
MRTQDIINATNHLVSLLPILGDSPHRQDYEDALEMVEYLLEHEPTNPLIDLLSVRIEKYENTAPEFAVFNARVASTETGLALLRVLMAQHGLNQSSFQQEIGSRSLVSKIMNGQRSLTLDHMRALAKRFNVPVAAFAG
>NZ_CP011602.1|WP_047372719.1|4935555_4935867_-|type-II-toxin-antitoxin-system-HigB-family-toxin
MHIISRAPFDEAAKRFPNDAQALTDVYKTLKRLRFTAPEEMKKVYATLDRMKYRERWWVIDVGGNKLRIVFYADFDAGRLFIKHIVAHSAYDKLIKKYQEQSE
>NZ_CP011602.1|WP_047372720.1|4936129_4936888_-|glutamine-amidotransferase
MADRPLIILQVGFPSESIREIHGDIPSWFCRAIQHPLEKTEVVRVFEGEALPPPDASRVAVITGSWAMVTDRLPWSEAAAEWIRQAMSIGMSLFGVCYGHQLMAHALGGEVEWHPQGREVGSQAIQLHPHASNDVLLSTLPREFPAHLTHMQTVSRLPEGALALASSSHDQHQIVRYGPNAMSTQFHPEFTPEIASAMINQREEVLTEEGFDPQALLAGVLPSPEATELLRRFVHQALRREIPLQGELAQSA
>NZ_CP011602.1|WP_082137101.1|4937632_4938544_+|fimbrial-protein
MRIKSVEFVFLFIVAILYPEWATAGACYDEIKYVTAADFISSKTLSAPGRERFTLGDIKGYCSIDIGSYYHDKVYYDGMYSSVSGCNISVTSQSPYCVACSVYSSVPSYSTSARPYANGVFLDCPAGHIQSLPANTTLAQGRMTFQGIDYSRTYAYLKFRLQGEVKAAGTCDVTGVDNSTVRLPSISRADLAGGTGRYTQLSKDFTFTLKCKNQPKINLKFDSLNKMTGVTDDVLANTTTGNDDVGFQIYYKNTPLNFGDNKALMTSTQDNEQLKFTAYYYRKSTGVNAGTITSNAEFIFNYE
>NZ_CP011602.1|WP_071845963.1|4938834_4939194_+|type-1-fimbrial-protein
MTVRAGYVSAKQPFTIKLECEHSPRVNVTFTGSTMAGTNDVILLSQYSGNPNIGIQLKYIDNYSTNKIIVKNGTAFRVLQNAGTHETLNFNSSYYYKGGGSPVSGGPVKANAEFIFTYP
>NZ_CP011602.1|WP_120785431.1|4939249_4939618_-|hypothetical-protein
MEHDVLLSTLPREFPAHLTHMQTVSRLPEGALALASSSHDQHQIVRYGPNAMSTQFHPEFTPAIAADMIRQREEVLTEEGFDPRALLASVLPSPEATEILRRFVHQAFSRTIPQSDDLAQSA
>NZ_CP011602.1|WP_167337909.1|4940192_4940903_+|fimbrial-protein
MTQRGFSVQVRVGSGSWMGSTWAGGSCVWLDSSCSLPGGNRTSSIQPISVRLVRNSTAAYDPIPPYTLIAIVYIAQSSVSGGGAGANLYFYTSGGTITPVNPTCNVKDFDKTVMLPPVNRDDISSHGVGRYSGATKEFDITLECSDKPKISVKFDGDKMTGIASDEVLANKATGNDNVGIQILHKDNPIKFGTAFEILTSTQKNESLKFNAYYYYKGGTVSPGPVKAQAEFLFTYK

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Crispr_ID: NZ_CP011602_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011602_8

5447151-5447277

Orphan

Consensus_repeat	Method
TCCGATTGGGAGAGGTCTCTGGCTTTTCTCCCTCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011602_8

>merge|NZ_CP011602|8|5447151-5447277|CRISPRCasFinder
TCCGATTGGGAGAGGTCTCTGGCTTTTCTCCCTCTTCCACAGGGAGAGGGAACATGTGCCGCATGTGGGAGAGGTGCCAGCCTTCCGCCATGTCCGATTGGGAGAGGTCTCTGGCTTTTCTCCCTCT

>NZ_CP011602|8|8|5447151-5447277|CRISPRCasFinder
TCCGATTGGGAGAGGTCTCTGGCTTTTCTCCCTCT	TCCACAGGGAGAGGGAACATGTGCCGCATGTGGGAGAGGTGCCAGCCTTCCGCCATG
TCCGATTGGGAGAGGTCTCTGGCTTTTCTCCCTCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011602.1\|WP_047373096.1\|5437223_5437562_+\|DUF1869-domain-containing-protein	unknown	unknown	gnl\|CDD\|370209
NZ_CP011602.1\|WP_047373108.1\|5454111_5455299_-\|cystathionine-beta-lyase	unknown	unknown	gnl\|CDD\|181231
NZ_CP011602.1\|WP_052958937.1\|5447279_5447813_-\|DUF3828-domain-containing-protein	unknown	unknown	gnl\|CDD\|372360
NZ_CP011602.1\|WP_047373104.1\|5450094_5450922_-\|2,5-didehydrogluconate-reductase-DkgA	unknown	unknown	gnl\|CDD\|183203
NZ_CP011602.1\|WP_047373100.1\|5439967_5442226_+\|DNA-topoisomerase-IV-subunit-A	unknown	unknown	gnl\|CDD\|235503
NZ_CP011602.1\|WP_047373097.1\|5437777_5438092_-\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|224278
NZ_CP011602.1\|WP_047373109.1\|5455551_5456286_+\|tol-pal-system-associated-acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|236685
NZ_CP011602.1\|WP_047373103.1\|5448435_5449890_-\|DASS-family-sodium-coupled-anion-symporter	unknown	unknown	gnl\|CDD\|279307
NZ_CP011602.1\|WP_047373106.1\|5452380_5453280_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377694
NZ_CP011602.1\|WP_047373095.1\|5436880_5437213_+\|DUF1971-domain-containing-protein	unknown	unknown	gnl\|CDD\|226142
NZ_CP011602.1\|WP_047373094.1\|5435549_5436620_+\|mannonate-dehydratase	unknown	unknown	gnl\|CDD\|235172
NZ_CP011602.1\|WP_047373107.1\|5453320_5453980_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP011602.1\|WP_047373098.1\|5438122_5438704_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225158
NZ_CP011602.1\|WP_047373101.1\|5442400_5443138_+\|1-acylglycerol-3-phosphate-O-acyltransferase	unknown	unknown	gnl\|CDD\|184979
NZ_CP011602.1\|WP_047373105.1\|5451023_5452187_-\|alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|185092
NZ_CP011602.1\|WP_052958939.1\|5447918_5448389_+\|carboxypeptidase-regulatory-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|379297
NZ_CP011602.1\|WP_047373110.1\|5456292_5456718_+\|TonB-system-transport-protein-ExbD	unknown	unknown	gnl\|CDD\|183064
NZ_CP011602.1\|WP_047373093.1\|5433816_5435223_-\|glucuronate-isomerase	unknown	unknown	gnl\|CDD\|376859
NZ_CP011602.1\|WP_047373102.1\|5443207_5444620_+\|cell-division-protein-FtsP	unknown	unknown	gnl\|CDD\|182808
NZ_CP011602.1\|WP_047373099.1\|5438905_5439772_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225980

Protein	Function_ID	Function_description	E-value
NZ_CP011602.1\|WP_047373096.1\|5437223_5437562_+\|DUF1869-domain-containing-protein	gnl\|CDD\|370209	pfam08956, DUF1869, Domain of unknown function (DUF1869). This domain is found in a set of hypothetical bacterial proteins.	5.55084e-29
NZ_CP011602.1\|WP_047373108.1\|5454111_5455299_-\|cystathionine-beta-lyase	gnl\|CDD\|181231	PRK08114, PRK08114, cystathionine beta-lyase; Provisional.	0
NZ_CP011602.1\|WP_052958937.1\|5447279_5447813_-\|DUF3828-domain-containing-protein	gnl\|CDD\|372360	pfam12883, DUF3828, Protein of unknown function (DUF3828). This is a family of bacterial proteins of unknown function.	3.40309e-25
NZ_CP011602.1\|WP_047373104.1\|5450094_5450922_-\|2,5-didehydrogluconate-reductase-DkgA	gnl\|CDD\|183203	PRK11565, dkgA, 2,5-didehydrogluconate reductase DkgA.	0
NZ_CP011602.1\|WP_047373100.1\|5439967_5442226_+\|DNA-topoisomerase-IV-subunit-A	gnl\|CDD\|235503	PRK05561, PRK05561, DNA topoisomerase 4 subunit A.	0
NZ_CP011602.1\|WP_047373097.1\|5437777_5438092_-\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	8.75333e-22
NZ_CP011602.1\|WP_047373109.1\|5455551_5456286_+\|tol-pal-system-associated-acyl-CoA-thioesterase	gnl\|CDD\|236685	PRK10414, PRK10414, biopolymer transporter ExbB.	3.93287e-169
NZ_CP011602.1\|WP_047373103.1\|5448435_5449890_-\|DASS-family-sodium-coupled-anion-symporter	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	1.35736e-129
NZ_CP011602.1\|WP_047373106.1\|5452380_5453280_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|377694	pfam06719, AraC_N, AraC-type transcriptional regulator N-terminus. This family represents the N-terminus of bacterial ARAC-type transcriptional regulators. In E. coli, these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein's DNA-binding domains. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating. All family members contain the pfam00165 domain.	8.02944e-49
NZ_CP011602.1\|WP_047373095.1\|5436880_5437213_+\|DUF1971-domain-containing-protein	gnl\|CDD\|226142	COG3615, TehB, Uncharacterized protein/domain, possibly involved in tellurite resistance [Inorganic ion transport and metabolism].	8.83594e-34
NZ_CP011602.1\|WP_047373094.1\|5435549_5436620_+\|mannonate-dehydratase	gnl\|CDD\|235172	PRK03906, PRK03906, mannonate dehydratase; Provisional.	0
NZ_CP011602.1\|WP_047373107.1\|5453320_5453980_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.7412e-42
NZ_CP011602.1\|WP_047373098.1\|5438122_5438704_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|225158	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only].	3.45238e-54
NZ_CP011602.1\|WP_047373101.1\|5442400_5443138_+\|1-acylglycerol-3-phosphate-O-acyltransferase	gnl\|CDD\|184979	PRK15018, PRK15018, 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional.	2.16438e-160
NZ_CP011602.1\|WP_047373105.1\|5451023_5452187_-\|alcohol-dehydrogenase	gnl\|CDD\|185092	PRK15138, PRK15138, alcohol dehydrogenase.	0
NZ_CP011602.1\|WP_052958939.1\|5447918_5448389_+\|carboxypeptidase-regulatory-like-domain-containing-protein	gnl\|CDD\|379297	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain.	2.96086e-08
NZ_CP011602.1\|WP_047373110.1\|5456292_5456718_+\|TonB-system-transport-protein-ExbD	gnl\|CDD\|183064	PRK11267, PRK11267, biopolymer transport protein ExbD; Provisional.	4.15434e-93
NZ_CP011602.1\|WP_047373093.1\|5433816_5435223_-\|glucuronate-isomerase	gnl\|CDD\|376859	pfam02614, UxaC, Glucuronate isomerase. This is a family of Glucuronate isomerases also known as D-glucuronate isomerase, uronic isomerase, uronate isomerase, or uronic acid isomerase, EC:5.3.1.12. This enzyme catalyzes the reactions: D-glucuronate <=> D-fructuronate and D-galacturonate <=> D-tagaturonate. It is not however clear where the experimental evidence for this functional assignment came from and thus this family has no literature reference.	0
NZ_CP011602.1\|WP_047373102.1\|5443207_5444620_+\|cell-division-protein-FtsP	gnl\|CDD\|182808	PRK10883, PRK10883, FtsI repressor; Provisional.	0
NZ_CP011602.1\|WP_047373099.1\|5438905_5439772_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|225980	COG3449, COG3449, DNA gyrase inhibitor [DNA replication, recombination, and repair].	1.34663e-58

>NZ_CP011602.1|WP_047373102.1|5443207_5444620_+|cell-division-protein-FtsP
MSLSRRQFIQVSGAAFCAGAIPLRANAAGQQPPLPIPPLIESRRGQPLFLTLQRAHWSFATGTRAQVWGVNGRYLGPTIRVWSGDDVKMIYSNRLAENVSMTVSGLQVPGPLIGGAARMMTANNDWAPVLPIRQSAATLWYHANTPNRTAQQVYNGLAGMWLVEDDVSKSLPIPNHYGVDDFPIIIQDKRLDNFGTPEYSEPGSGGFVGDTLMVNGAQSPFVEVSRGWVRLRLLNASNSRRYQLQMSDGRPLHVISGDQGFLPAPVSIKQLALAPGERREVLVDMTNGDEVSVTCGEAAGIMDRLRGFFEPSSILISTLVLTLRPTGLLPLVTDTLPMRLLPSDIMTGTPVRSRDITLGSDPGINGQLWDPQRIDITAQQGSWERWTVRADMPQSFHMEGVQFQVRNVNGAMPFPEDRGWKDTVWVDGQVELLVYYGQPSWPHFPFQYGSQTLEMADRGSIGQLLVNPAA
>NZ_CP011602.1|WP_047373101.1|5442400_5443138_+|1-acylglycerol-3-phosphate-O-acyltransferase
MLFIVRFIIVVIYSILVCVFGSLYCLFSPRNPKHVATFGHMFGRLAPVFGLKVEKRFPQGYQQHGKAIYIANHQNNYDMVTASNIVQPPTVTVGKKSLLWVPFFGLLYWLTGNLLIDRNNRAKAHGTIAQVVKHIQKRNISVWMFPEGTRSRGRGLLPFKTGAFHAAIAAGVPIIPVCVSGTSNKINLNRLKNGLVIVEMLPPIETTGYGKDQIRELAARCHELMKTKIDELDKEVAEREATGRV
>NZ_CP011602.1|WP_047373100.1|5439967_5442226_+|DNA-topoisomerase-IV-subunit-A
MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAEVLLGELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAIALIEQPKTTLDQLLDIVQGPDYPTEAEIITSRTEIRKIYENGRGSVRMRAVWKKEDGAVVITALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLTFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIHIIRTEDEPKPVLMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELAKERDQLQAILASERKMNNLLKKELQADSDAFGDDRRSPLHEREEAKAMNEHDMQPSEPVTIVLSQMGWVRSAKGHDIDAQGLSYKAGDSWKASAKGKSNQPVVFIDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGAVVEHMVMTNEDQKLLMASDAGYGFVCTFNDLVARNRAGKTLISLPDNARVMPPLEIENDADMLLAITTAGRMLMFPVGDLPQLSKGKGNKIIGIPSAEAAKGEDGLAHLYLLPPQSTLTIHVGKRKIKLRPEELQKVQGERGRRGTLMRGLQRIDRVEIDSPSRPSAGNSEE
>NZ_CP011602.1|WP_047373099.1|5438905_5439772_+|AraC-family-transcriptional-regulator
MNDTRKADYSARFRMVCHYIERHLDEPLSLEALSAIAHCSPFHFHRMFTAWSGLPFYRYIQWLRLRHASWRLAFNPHDKIIDIALDAGFQNPESFSRAFKTALGASPRQFRLEPDWVSWHQRVPKNVLQERTMKEINIVVFPTTAVAILKHRGDPARVNASAATFIEWRRSSGLSPVERYPTYGIAWDDPASVPADAFRFDICAAVEQAVPANTFGVENGEIPGGRCAVIRHHGSLDSIGESVYHLYRHWLPESGETVRDFPVFFHYLNFVHQVPEHELKTDIYLPLA
>NZ_CP011602.1|WP_047373098.1|5438122_5438704_-|NAD(P)H-dependent-oxidoreductase
MSNILIINGAKKFAHSKGQLNDTLTSVAESFLRDNGHAVKSVRTDGDYDVKEEVQNFLWADVVIWQMPGWWMGAPWTVKKYMDDVFTEGHGSLYASDGRTRSDGAKKYGSGGLIQGKKYMLSLTWNAPLDAFTDEEQFFHGVGVDGVYLPFHKANQFLGMEALPSFIANDVIKMPDVPRYIEEYRKHLAEIFA
>NZ_CP011602.1|WP_047373097.1|5437777_5438092_-|antibiotic-biosynthesis-monooxygenase
MLTVIAEIRTRPGQHHRQAVLDQFAKIIPTVLQEEGCHGYAPWVDHAAGVSFQTTAPDSIIMVENWESVAHLEAHLQTPHMKAWSEAVKGDVLETHIRILEQGV
>NZ_CP011602.1|WP_047373096.1|5437223_5437562_+|DUF1869-domain-containing-protein
MTTENKGYSLVITNRSSKTSAEKVYLKPMALYVPDIAVAAVAELVETLADKSASERGFILTVTNNNNGVSVDKDFSALAELQDATVAADAVKDLINIVRGYESDEETNVCGW
>NZ_CP011602.1|WP_047373095.1|5436880_5437213_+|DUF1971-domain-containing-protein
MQRIVIPTHYVHVRSTPLWTKETAPASIWQRHLDAGTRQGVNPRLCVMQGAIRYYGYADETSPQPVETLTIEAGQFGVFPAEKWHRIEALSDDTVFNVDFWVDPNVLIEG
>NZ_CP011602.1|WP_047373094.1|5435549_5436620_+|mannonate-dehydratase
MQMTMRWFGPKEDKVSLEYIRQVPGVEGVVGALYDVPVGEIWPEDKIEALVGQASAAGLKMEVIESVNIHDDIKIGLPSRDRYIANYQQTIRNLARFGVKVICYNFMPVFDWMKTDMNYVLPDGSLTMAFEKKDIDKSLEEVVSEVLSNSNGFALPGWEPERLAQVQKLFASYKDVDDEKLRENLVYFLKAVIPVCEDVGVKMAIHPDDPPYSIFGLPRVVKNRQDLDWLCNAVNSEANGITLCTGSIAEDPENNVYEILAEFTRRKRIHFAHVRNIKLIKDKDFYECAHPSQYGSLDMYNVMKALHDNGFDGYIRPDHGRFIWGETGRPGYGLYDRALGVTYLMGLWEALQKQSA
>NZ_CP011602.1|WP_047373093.1|5433816_5435223_-|glucuronate-isomerase
MTLINDDFMINSSAGKTLYTRYAKKQPILDYHCHLEAKDIFENLPFRDITHLWLEGDHYKWRAMRANGIKEKYITGNASAEEKFEAWAKTVESSFGNPLYHWTHLELAHYFDIHTPLNHSNWREVMNECNNKLKNSDFTPRNLITRSNVEVICTTDKPLDDLKYHQLLKNDNGFTTRILPTFRPDELFEADPVRFSQFIDQLSKISSVTVTHFSSFIAAIAGRIDFFHEVGCRISDHGPLEVSYQRVSDEQAETLFAARMAQQALSPEGMQAWNSIMLVKLAALYKQKEWAMQIHFGAIRNNNMPQYHAIGINSGFDSIADQQNLAAHLNALLNAMAENDGLPKTILYNLNAGYNDIVASALANFQSGEEGIKSPMQFGSGWWFNDTQRGMLNQLTTLSDQGLLANFIGMLTDSRSFVSYTRHDYFRRILCNLIGGWVDRGEVPEDMDILSSMVKGICADNARSYFNF
>NZ_CP011602.1|WP_052958937.1|5447279_5447813_-|DUF3828-domain-containing-protein
MRKLLVLLFICSFSAFAESPQRSVELLYQHYKDNQAGVIFDASGKDQVISSRLMKEVAEDQRLTAEGDVGYLNYDPICNCQDYDNLVLEQVDIVPHDGQHVDAVVRFRPFSDGPETVTQTLSLVDENGRWLIDDIVNETQSLYQGIKEYNRERQQEALGDKAAEKSTTSSPSPQPSP
>NZ_CP011602.1|WP_052958939.1|5447918_5448389_+|carboxypeptidase-regulatory-like-domain-containing-protein
MATRFWPGVALLALLQSGCVAYTQSQPALEGRLLDSTGKPIPAATITLKSHRPGASTVTDSNGFFAFAGEHEWSFFLPIGPIDKINLSRLLISAQGQQYDVLLSYGLSGPYGSGPSEVGVLCSLPQAQLPTEKEGTTPEICQRVPYKNMQASRAAE
>NZ_CP011602.1|WP_047373103.1|5448435_5449890_-|DASS-family-sodium-coupled-anion-symporter
MAEKNTSGVRWLPLIIIVVIATGLWQVAPPEGLSAQAWHSAIVFVATIASIVAKVLPIGAVGIIGITVFAITYAAGDKTANGAILTALSELNSSLIWLIVVAFMIARGFIKTGLGRRIALQMIRLLGKRTLGLAYGLAFADLILSPAMPSNTARCGGVIYPIADSLARSFDSRPEDESRSKIGTFLITCIGNVNDVTAALFMTGYTGNLLAVKLAANAGVTLTWGGWFIAALAPCLVSLLIVPVLVYWITRPEIKHTPDAPVLAQRELALMGKMSRGEWLMLGTVLLLLILWIFGDALGVDPTTASFVGLSVLLLSGVLSWEDVKSEKGAWDTLIWFAALLMMANQLKKLGFTTWFGGVIGESIGNAMGGTSWVIVLLLLNAAYFYTHYFFASGNAQIAALYAVFLGVGIHLNIPAAPMALMLAFTSSLYCSLTQYTHARGPILFGAGYVPTGIWWRTGFLISLFNQAVFMVIGLAWWKMLGLY
>NZ_CP011602.1|WP_047373104.1|5450094_5450922_-|2,5-didehydrogluconate-reductase-DkgA
MTHPTVIKLSDGNLMPQLGLGVWKAGNEEVVSAIHKALEVGYRSIDTAAAYKNEDGVGTALKSAGVARDDLFITTKLWNDDQKRPQEALQESLDKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIKLQEQGLVKSIGVCNFQIHHLQKLIDETNVTPVINQIELHPLLQQRQLHAWNATHKIQTESWSPLAQGGEGVFDQKIIRELADKYGKTPAQIVIRWHLDCGLIVIPKSVTPARIAENFDVWDFRLDKDELGEIARLDQGKRLGPDPDQFGG
>NZ_CP011602.1|WP_047373105.1|5451023_5452187_-|alcohol-dehydrogenase
MNNFNLHTPTRILFGKGAIADLREQIPADARVLITYGGGSVKKNGVLDQVYSALEGLDVREFSGIEPNPSYETLMKAVKIAKDDNITFLLAVGGGSVLDGTKFIAAAAHYADGVDPWEILQTYGGKITSAIPMGSVLTLPATGSESNKGAVISRKTTGDKQAFMSEHVQPIFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTYPVNGKIQDRFAEGILLTLIEEGPKALKEPENYDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAMHGLDHAQTLAIVLPALWNEKRDTKRAKLLQYAERVWNITEGSEDSRIDAAIEATRGFFEQMGVPTRLSGYGLDGSSIPALLAKLEEHGMTKLGEHQDITLDVSRRIYEAAR
>NZ_CP011602.1|WP_047373106.1|5452380_5453280_+|AraC-family-transcriptional-regulator
MNRDEICQVLTQKVKTLKNNENYLSTLLPDIRLLYGTEPGTRTPVMYQPGIVFLFSGHKIGYINERVFRYDTNEYLLLTVPLPFECETYATPEVPLAGLRLNVDILQLQELLMDIGEDESFQPAMAASGINSATLSEEILCAAERLLDVMERPLDARILGKQIIRELLYHVLIGPRGGALLALVSRQTHFSLISRVLKRIESQYTENLSVDELAAEANMSVSAFHHNFKSVTSTSPLQYLKSYRLHKARMMMIHDGMKASAAAIRVGYESPSQFSREFKRYFGVTPGEDAARIRMMQGG
>NZ_CP011602.1|WP_047373107.1|5453320_5453980_-|DedA-family-protein
MAVIQDIIAALWHHDFAALANPHIVGVVYLVMFATLFLENGLLPASFLPGDSLLLLAGALVARGCMDYLSTLVILTSAASLGCWLSYLQGRWLGNTRVVKSWLAQLPEKYHQRATCMFDRHGLLALLAGRFLAFVRTLLPTMAGISGLSSRRFQLFNWLSGLLWVGMITTLGYAISMIPFVKRHEDQVMTFLMILPLFLLVAGLVGTLAVVIKKKYCSA
>NZ_CP011602.1|WP_047373108.1|5454111_5455299_-|cystathionine-beta-lyase
MTAKHIDTALVNAGRSKKYTQGSVNSVIQRASSLVFDTVEAKKQATRNRAKGELFYGRRGTLTHFSLQEAMCELEGGAGCALFPCGAAAVANTILAFVEQGDHILMTNTAYEPTQDFSTKILAKLGVTTSWFDPMIGASIVRLIQPNTKIVFLESPGSITMEVHDVPAIVQAVRSVAPEAIIMIDNTWAAGILFKALEFDIDISIQAATKYLIGHSDGMIGTAVSNARCWDQLRENAYLMGQMVDADTAYMTSRGLRTLGVRLRQHHESSLKIAQWLASHPQVAQVNHPALPGSKGHEFWKRDFNGSSGLFSFILNKRLNNEEMAAYLDNFSLFSMAYSWGGYESLILANQPEQIAAIRPDGGVDFSGTLIRVHIGLEDVDDLIEDLAAGFQRIV
>NZ_CP011602.1|WP_047373109.1|5455551_5456286_+|tol-pal-system-associated-acyl-CoA-thioesterase
MGNNLMQADLSVWGMYQHADIVVKIVMIGLMLASVVTWAIFFSKSAEMIAHKRRLKREQQLLADARSLDQASEIASSFHARSLSTQLLNEAQNELELSAGSEDNEGIKERTGFRLERRVAATGRHMGRGNGYLATIGAISPFVGLFGTVWGIMNSFIGIAQTQTTNLAVVAPGIAEALLATAIGLVAAIPAVVIYNIFARMIGGYKATLGDVAAQVLLLQSRDLDLAASASAKPVHAAQKLRVG
>NZ_CP011602.1|WP_047373110.1|5456292_5456718_+|TonB-system-transport-protein-ExbD
MAMRLNENLDDNGEMHEINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSQPQPRPEKPIYLSVKADNTMFIGNESVTDETMVTELNAVTEGKKDTTVFFRADKTVDYETIMKVMDTLHRAGYLKIGLVGEETAAAK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP011602_7	7.1\|4932032\|26\|NZ_CP011602\|CRISPRCasFinder	4932032-4932057	26	NZ_CP011602.1	5354370-5354395	2	0.923

1. spacer 7.1|4932032|26|NZ_CP011602|CRISPRCasFinder matches to position: 5354370-5354395, mismatch: 2, identity: 0.923

acagggagagggaaccgatcgcgcgg	CRISPR spacer
acggggagagggaaccgatcgagcgg	Protospacer
**.****************** ****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	NZ_KX580713	Escherichia coli strain ZJ623 plasmid unnamed, complete sequence	41685-41716	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	NZ_KY352406	Salmonella enterica subsp. enterica serovar Typhimurium strain YL14P053 plasmid pMCR16_P053, complete sequence	18664-18695	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	NZ_KY463452	Escherichia coli strain WCHEC050622 plasmid pMCR_WCHEC1622, complete sequence	34835-34866	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	NZ_KX377410	Klebsiella pneumoniae strain WCHKP1511 plasmid pMCR_1511, complete sequence	23105-23136	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	NZ_KP324830	Escherichia coli isolate FP671 plasmid pHNFP671, complete sequence	5676-5707	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	NZ_CP042602	Escherichia coli strain NCYU-29-69 plasmid pNCYU-29-69-3_MCR3, complete sequence	41467-41498	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	NZ_CP035638	Enterobacter cloacae strain EN3600 plasmid unnamed6, complete sequence	1650-1681	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	MN542377	Klebsiella pneumoniae subsp. pneumoniae strain 494 plasmid pKPC2_sg1, complete sequence	27617-27648	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	MN542378	Klebsiella pneumoniae subsp. pneumoniae strain 607 plasmid pKPC2_sg2, complete sequence	27617-27648	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	LC549805	Escherichia coli VNCEc117 plasmid pVNCEc117 DNA, complete sequence	7192-7223	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	NZ_CP030221	Salmonella enterica strain SA20021456 plasmid pSA20021456.2, complete sequence	242-273	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	NZ_CP033354	Salmonella enterica subsp. enterica strain CFSA664 plasmid pCFSA664-2, complete sequence	14658-14689	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	NZ_CP032987	Escherichia coli strain BE2-5 plasmid pMCR_BE2-5, complete sequence	2617-2648	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	NZ_CP024128	Escherichia coli strain 14EC001 plasmid p14EC001a, complete sequence	32987-33018	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	LC532225	Enterobacter hormaechei subsp. xiangfangensis A2483 plasmid pA2483imp-1 DNA, complete sequence	5011-5042	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	LC532227	Enterobacter hormaechei subsp. xiangfangensis A2504 plasmid pA2504imp-1 DNA, complete sequence	26097-26128	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	NZ_CP044383	Klebsiella pneumoniae strain 2018S07-013 plasmid p2018S07-013-3_MCR3, complete sequence	35121-35152	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	NZ_AP023201	Escherichia coli strain TUM18780 plasmid pMTY18780-4, complete sequence	3829-3860	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	NZ_CP035195	Klebsiella pneumoniae strain LH102-A plasmid pLH102-A, complete sequence	33394-33425	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	NC_023907	Escherichia coli strain HS102707 plasmid pHS102707, complete sequence	60634-60665	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	NZ_CP045957	Salmonella enterica subsp. enterica serovar Enteritidis strain AUSMDU00010527 plasmid pAUSMDU00010527, complete sequence	13826-13857	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	NZ_AP021897	Escherichia coli strain 2018-02-2CC plasmid p2018_02_02CC, complete sequence	6973-7004	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	NZ_MH043623	Escherichia coli strain GDZJ002 plasmid pGDZJ002-1, complete sequence	16463-16494	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	NZ_MH043626	Escherichia coli strain GDZJ004 plasmid pGDZJ004, complete sequence	16366-16397	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	NZ_MF978389	Escherichia coli strain GDT6F36 plasmid pHNGDF36-1, complete sequence	23077-23108	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	NZ_MF990207	Escherichia coli strain GDP6F1 plasmid pHNGDF1-1, complete sequence	18166-18197	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	NZ_MG552133	Escherichia coli strain ECSC102 plasmid pECSC102, complete sequence	14399-14430	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	NZ_MF678351	Escherichia coli strain WCHEC025943 plasmid pMCR3_WCHEC1943, complete sequence	44423-44454	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	NZ_MF489760	Escherichia coli strain WCHEC-LL123 plasmid pMCR3_WCHEC-LL123, complete sequence	16366-16397	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	NZ_MF136778	Escherichia coli strain HKSHmcr1_P2_EC plasmid pHKSHmcr1_P2_p1, complete sequence	29127-29158	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	NZ_MH043625	Escherichia coli strain GDZJ003 plasmid pGDZJ003-1-MCR-3, complete sequence	16372-16403	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	NZ_CP027203	Escherichia coli strain WCHEC025943 plasmid pMCR3_025943, complete sequence	4108-4139	0	1.0
NZ_CP011602_1	1.5\|238690\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238690-238721	32	NZ_CP026198	Enterobacteriaceae bacterium ENNIH3 plasmid pKPC-c606, complete sequence	37489-37520	0	1.0
NZ_CP011602_1	1.5\|238690\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238690-238721	32	NZ_CP025983	Enterobacteriaceae bacterium A-F18 plasmid pAF18_1, complete sequence	49542-49573	0	1.0
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	NC_022650	Escherichia coli JJ1886 plasmid pJJ1886_4, complete sequence	1315-1346	2	0.938
NZ_CP011602_1	1.5\|238690\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238690-238721	32	NZ_CP051549	Phytobacter diazotrophicus strain UAEU22 plasmid unnamed1	91940-91971	2	0.938
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	NZ_CP025711	Escherichia coli strain YDC107 plasmid pYDC107_41, complete sequence	13834-13865	3	0.906
NZ_CP011602_1	1.3\|238568\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238568-238599	32	NZ_CP051225	Escherichia coli strain SCZE5 plasmid pSCZE3	33563-33594	3	0.906
NZ_CP011602_3	3.1\|1644275\|25\|NZ_CP011602\|CRISPRCasFinder	1644275-1644299	25	NC_013940	Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence	261298-261322	3	0.88
NZ_CP011602_3	3.1\|1644275\|25\|NZ_CP011602\|CRISPRCasFinder	1644275-1644299	25	NC_005917	Helicobacter pylori plasmid pAL202, complete sequence	2682-2706	3	0.88
NZ_CP011602_3	3.1\|1644275\|25\|NZ_CP011602\|CRISPRCasFinder	1644275-1644299	25	NC_004950	Helicobacter pylori plasmid pHel4 complete sequence	8949-8973	3	0.88
NZ_CP011602_3	3.1\|1644275\|25\|NZ_CP011602\|CRISPRCasFinder	1644275-1644299	25	NC_017373	Helicobacter pylori SouthAfrica7 plasmid, complete sequence	4259-4283	3	0.88
NZ_CP011602_3	3.1\|1644275\|25\|NZ_CP011602\|CRISPRCasFinder	1644275-1644299	25	NZ_CP027769	Tetragenococcus halophilus strain LMG 26042 plasmid pTHF, complete sequence	24110-24134	4	0.84
NZ_CP011602_3	3.1\|1644275\|25\|NZ_CP011602\|CRISPRCasFinder	1644275-1644299	25	MN692946	Marine virus AFVG_117M27, complete genome	2269-2293	4	0.84
NZ_CP011602_3	3.1\|1644275\|25\|NZ_CP011602\|CRISPRCasFinder	1644275-1644299	25	MN694368	Marine virus AFVG_250M429, complete genome	2269-2293	4	0.84
NZ_CP011602_7	7.1\|4932032\|26\|NZ_CP011602\|CRISPRCasFinder	4932032-4932057	26	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	55225-55250	4	0.846
NZ_CP011602_1	1.4\|238629\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238629-238660	32	NZ_CP032520	Cupriavidus oxalaticus strain T2 plasmid unnamed1, complete sequence	432389-432420	8	0.75
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	8892-8936	8	0.822
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	40381-40425	8	0.822
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	194003-194047	8	0.822
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	204497-204541	8	0.822
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	195331-195375	8	0.822
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	176286-176330	8	0.822
NZ_CP011602_1	1.2\|238507\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238507-238538	32	NC_023610	Erwinia phage PhiEaH1, complete genome	203253-203284	9	0.719
NZ_CP011602_1	1.4\|238629\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238629-238660	32	NC_009620	Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence	1002401-1002432	9	0.719
NZ_CP011602_1	1.4\|238629\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238629-238660	32	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	1443414-1443445	9	0.719
NZ_CP011602_1	1.5\|238690\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238690-238721	32	NZ_CP006570	Sodalis praecaptivus strain HS1 plasmid pHS1, complete sequence	238052-238083	9	0.719
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	404133-404177	9	0.8
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	MT230112	Escherichia coli strain DH5alpha plasmid pESBL112, complete sequence	98-142	9	0.8
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229386-229430	9	0.8
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239880-239924	9	0.8
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230792-230836	9	0.8
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211762-211806	9	0.8
NZ_CP011602_1	1.4\|238629\|32\|NZ_CP011602\|PILER-CR,CRISPRCasFinder,CRT	238629-238660	32	NZ_CP024314	Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence	665791-665822	10	0.688
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	386512-386556	10	0.778
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	397088-397132	10	0.778
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	27031-27075	10	0.778
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	211730-211774	10	0.778
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	211930-211974	10	0.778
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229083-229127	10	0.778
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229184-229228	10	0.778
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	222224-222268	10	0.778
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	222424-222468	10	0.778
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239577-239621	10	0.778
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239678-239722	10	0.778
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	213058-213102	10	0.778
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	213258-213302	10	0.778
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230489-230533	10	0.778
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230590-230634	10	0.778
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	194013-194057	10	0.778
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	194213-194257	10	0.778
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211459-211503	10	0.778
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211560-211604	10	0.778
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	14109-14153	10	0.778
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	51838-51882	10	0.778
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	313596-313640	11	0.756
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	102548-102592	11	0.756
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	56035-56079	11	0.756
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	30213-30257	11	0.756
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	40305-40349	11	0.756
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	27998-28042	11	0.756
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31303-31347	11	0.756
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	137973-138017	12	0.733
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	3326-3370	12	0.733
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4068-4112	12	0.733
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	3325-3369	12	0.733
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4067-4111	12	0.733
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	3325-3369	12	0.733
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4067-4111	12	0.733
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	3325-3369	12	0.733
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4067-4111	12	0.733
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	MG065686	UNVERIFIED: Campylobacter phage A18a, complete genome	6904-6948	12	0.733
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	MG065691	UNVERIFIED: Campylobacter phage A11a, complete genome	167175-167219	12	0.733
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	MF374379	Escherichia phage DN1, complete genome	31162-31206	12	0.733
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	82846-82890	13	0.711
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	1-41	13	0.711
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	24784-24828	13	0.711
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	24897-24941	13	0.711
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	114993-115037	13	0.711
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	1-40	14	0.689
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	1-40	14	0.689
NZ_CP011602_6	6.1\|4700542\|45\|NZ_CP011602\|CRISPRCasFinder	4700542-4700586	45	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	1-40	14	0.689

1. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KX580713 (Escherichia coli strain ZJ623 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

2. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY352406 (Salmonella enterica subsp. enterica serovar Typhimurium strain YL14P053 plasmid pMCR16_P053, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

3. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY463452 (Escherichia coli strain WCHEC050622 plasmid pMCR_WCHEC1622, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

4. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KX377410 (Klebsiella pneumoniae strain WCHKP1511 plasmid pMCR_1511, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

5. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KP324830 (Escherichia coli isolate FP671 plasmid pHNFP671, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

6. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042602 (Escherichia coli strain NCYU-29-69 plasmid pNCYU-29-69-3_MCR3, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

7. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035638 (Enterobacter cloacae strain EN3600 plasmid unnamed6, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

8. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to MN542377 (Klebsiella pneumoniae subsp. pneumoniae strain 494 plasmid pKPC2_sg1, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

9. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to MN542378 (Klebsiella pneumoniae subsp. pneumoniae strain 607 plasmid pKPC2_sg2, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

10. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to LC549805 (Escherichia coli VNCEc117 plasmid pVNCEc117 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

11. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030221 (Salmonella enterica strain SA20021456 plasmid pSA20021456.2, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

12. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033354 (Salmonella enterica subsp. enterica strain CFSA664 plasmid pCFSA664-2, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

13. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032987 (Escherichia coli strain BE2-5 plasmid pMCR_BE2-5, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

14. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024128 (Escherichia coli strain 14EC001 plasmid p14EC001a, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

15. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to LC532225 (Enterobacter hormaechei subsp. xiangfangensis A2483 plasmid pA2483imp-1 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

16. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to LC532227 (Enterobacter hormaechei subsp. xiangfangensis A2504 plasmid pA2504imp-1 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

17. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044383 (Klebsiella pneumoniae strain 2018S07-013 plasmid p2018S07-013-3_MCR3, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

18. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP023201 (Escherichia coli strain TUM18780 plasmid pMTY18780-4, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

19. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035195 (Klebsiella pneumoniae strain LH102-A plasmid pLH102-A, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

20. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NC_023907 (Escherichia coli strain HS102707 plasmid pHS102707, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

21. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045957 (Salmonella enterica subsp. enterica serovar Enteritidis strain AUSMDU00010527 plasmid pAUSMDU00010527, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

22. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP021897 (Escherichia coli strain 2018-02-2CC plasmid p2018_02_02CC, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

23. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH043623 (Escherichia coli strain GDZJ002 plasmid pGDZJ002-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

24. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH043626 (Escherichia coli strain GDZJ004 plasmid pGDZJ004, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

25. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF978389 (Escherichia coli strain GDT6F36 plasmid pHNGDF36-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

26. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF990207 (Escherichia coli strain GDP6F1 plasmid pHNGDF1-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

27. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG552133 (Escherichia coli strain ECSC102 plasmid pECSC102, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

28. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF678351 (Escherichia coli strain WCHEC025943 plasmid pMCR3_WCHEC1943, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

29. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF489760 (Escherichia coli strain WCHEC-LL123 plasmid pMCR3_WCHEC-LL123, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

30. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF136778 (Escherichia coli strain HKSHmcr1_P2_EC plasmid pHKSHmcr1_P2_p1, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

31. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH043625 (Escherichia coli strain GDZJ003 plasmid pGDZJ003-1-MCR-3, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

32. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027203 (Escherichia coli strain WCHEC025943 plasmid pMCR3_025943, complete sequence) position: , mismatch: 0, identity: 1.0

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gagtgatgacacccgtacagggagaagtcgag	Protospacer
********************************

33. spacer 1.5|238690|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026198 (Enterobacteriaceae bacterium ENNIH3 plasmid pKPC-c606, complete sequence) position: , mismatch: 0, identity: 1.0

gtgccgcttccctggggaaaaccagactgatt	CRISPR spacer
gtgccgcttccctggggaaaaccagactgatt	Protospacer
********************************

34. spacer 1.5|238690|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025983 (Enterobacteriaceae bacterium A-F18 plasmid pAF18_1, complete sequence) position: , mismatch: 0, identity: 1.0

gtgccgcttccctggggaaaaccagactgatt	CRISPR spacer
gtgccgcttccctggggaaaaccagactgatt	Protospacer
********************************

35. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NC_022650 (Escherichia coli JJ1886 plasmid pJJ1886_4, complete sequence) position: , mismatch: 2, identity: 0.938

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gaatgatgacacccgtacagggggaagtcgag	Protospacer
**.*******************.*********

36. spacer 1.5|238690|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051549 (Phytobacter diazotrophicus strain UAEU22 plasmid unnamed1) position: , mismatch: 2, identity: 0.938

gtgccgcttccctggggaaaaccagactgatt	CRISPR spacer
gtgccgcatccctggggaaaaccagattgatt	Protospacer
******* ******************.*****

37. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025711 (Escherichia coli strain YDC107 plasmid pYDC107_41, complete sequence) position: , mismatch: 3, identity: 0.906

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gaatgatgacacccgtacagggggaagtcgaa	Protospacer
**.*******************.********.

38. spacer 1.3|238568|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051225 (Escherichia coli strain SCZE5 plasmid pSCZE3) position: , mismatch: 3, identity: 0.906

gagtgatgacacccgtacagggagaagtcgag	CRISPR spacer
gaatgatgacacccgtacagggggaagtcgaa	Protospacer
**.*******************.********.

39. spacer 3.1|1644275|25|NZ_CP011602|CRISPRCasFinder matches to NC_013940 (Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence) position: , mismatch: 3, identity: 0.88

aacttttttgtggtgttttttcttg	CRISPR spacer
ctcttttttgtgttgttttttcttg	Protospacer
  ********** ************

40. spacer 3.1|1644275|25|NZ_CP011602|CRISPRCasFinder matches to NC_005917 (Helicobacter pylori plasmid pAL202, complete sequence) position: , mismatch: 3, identity: 0.88

aacttttttgtggtgttttttcttg	CRISPR spacer
aacttttttgttgagttttttcttt	Protospacer
*********** * **********

41. spacer 3.1|1644275|25|NZ_CP011602|CRISPRCasFinder matches to NC_004950 (Helicobacter pylori plasmid pHel4 complete sequence) position: , mismatch: 3, identity: 0.88

aacttttttgtggtgttttttcttg	CRISPR spacer
aacttttttgttgagttttttcttt	Protospacer
*********** * **********

42. spacer 3.1|1644275|25|NZ_CP011602|CRISPRCasFinder matches to NC_017373 (Helicobacter pylori SouthAfrica7 plasmid, complete sequence) position: , mismatch: 3, identity: 0.88

aacttttttgtggtgttttttcttg	CRISPR spacer
aacttttttgttgagttttttcttt	Protospacer
*********** * **********

43. spacer 3.1|1644275|25|NZ_CP011602|CRISPRCasFinder matches to NZ_CP027769 (Tetragenococcus halophilus strain LMG 26042 plasmid pTHF, complete sequence) position: , mismatch: 4, identity: 0.84

aacttttttgtggtgttttttcttg	CRISPR spacer
gtctttcttgtggtgttttatcttg	Protospacer
. ****.************ *****

44. spacer 3.1|1644275|25|NZ_CP011602|CRISPRCasFinder matches to MN692946 (Marine virus AFVG_117M27, complete genome) position: , mismatch: 4, identity: 0.84

aacttttttgtggtgttttttcttg	CRISPR spacer
ttcttttttgttctgttttttcttg	Protospacer
  *********  ************

45. spacer 3.1|1644275|25|NZ_CP011602|CRISPRCasFinder matches to MN694368 (Marine virus AFVG_250M429, complete genome) position: , mismatch: 4, identity: 0.84

aacttttttgtggtgttttttcttg	CRISPR spacer
ttcttttttgttctgttttttcttg	Protospacer
  *********  ************

46. spacer 7.1|4932032|26|NZ_CP011602|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 4, identity: 0.846

acagggagagggaaccgatcgcgcgg	CRISPR spacer
taagggagagggaaccgatcgagcgc	Protospacer
  ******************* ***

47. spacer 1.4|238629|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032520 (Cupriavidus oxalaticus strain T2 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cttctatgccggaaaggtcacgctcaacaatg	CRISPR spacer
tccgcaagccggaaaggtcacgctcaaacatg	Protospacer
... .* ********************  ***

48. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 8, identity: 0.822

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
catcgtaggccggataaggcgtttacgccgcatccggcaaccgcg	Protospacer
   ***** **************************** ****  .

49. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 8, identity: 0.822

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
aaccgtaggccggataaggcgtttacgccgcatccggcaaaaagc	Protospacer
*  ***** **************************** **   *

50. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.822

acgcgtagcccggataaggcgtttacgccgcatccgg---gaacccga	CRISPR spacer
attcgtaggccggataaggcgttcacgccgcatccggcatgaaca---	Protospacer
*. ***** **************.*************   ****

51. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.822

acgcgtagcccggataaggcgtttacgccgcatccgg---gaacccga	CRISPR spacer
attcgtaggccggataaggcgttcacgccgcatccggcatgaaca---	Protospacer
*. ***** **************.*************   ****

52. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.822

acgcgtagcccggataaggcgtttacgccgcatccgg---gaacccga	CRISPR spacer
attcgtaggccggataaggcgttcacgccgcatccggcatgaaca---	Protospacer
*. ***** **************.*************   ****

53. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.822

acgcgtagcccggataaggcgtttacgccgcatccgg---gaacccga	CRISPR spacer
attcgtaggccggataaggcgttcacgccgcatccggcatgaaca---	Protospacer
*. ***** **************.*************   ****

54. spacer 1.2|238507|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NC_023610 (Erwinia phage PhiEaH1, complete genome) position: , mismatch: 9, identity: 0.719

agcgaatttacgtttttcagggtggcagaaaa	CRISPR spacer
cccacggtcacgttgttcagggtggcagacaa	Protospacer
  *. . *.***** ************** **

55. spacer 1.4|238629|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NC_009620 (Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence) position: , mismatch: 9, identity: 0.719

cttctatgccggaaaggtcacgctcaacaatg	CRISPR spacer
cggctatgcgggaaaggtcacgctcatttcgc	Protospacer
*  ****** **************** .

56. spacer 1.4|238629|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 9, identity: 0.719

cttctatgccggaaaggtcacgctcaacaatg	CRISPR spacer
tctctatgccggaaagggcatgctcgccacca	Protospacer
..*************** **.****. ** ..

57. spacer 1.5|238690|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006570 (Sodalis praecaptivus strain HS1 plasmid pHS1, complete sequence) position: , mismatch: 9, identity: 0.719

gtgccgcttccctggggaaaaccagactgatt	CRISPR spacer
atgccgcttcactggcgaaaaccaaccgggaa	Protospacer
.********* **** ********. * *.

58. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.8

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
tcctgtaggccggataaggcgtttacgccgcatccggcaagaaaa	Protospacer
 * .**** **************************** **   .*

59. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to MT230112 (Escherichia coli strain DH5alpha plasmid pESBL112, complete sequence) position: , mismatch: 9, identity: 0.8

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
ttttgtaggccggataaggcgtttacgccgcatccggcaacataa	Protospacer
 . .**** **************************** *** ..*

60. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.8

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
atccgtaggccggataaggcgtttacgccgcatccggcagtcgtg	Protospacer
*. ***** **************************** *..*  .

61. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.8

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
atccgtaggccggataaggcgtttacgccgcatccggcagtcgtg	Protospacer
*. ***** **************************** *..*  .

62. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.8

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
atccgtaggccggataaggcgtttacgccgcatccggcagtcgtg	Protospacer
*. ***** **************************** *..*  .

63. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.8

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
atccgtaggccggataaggcgtttacgccgcatccggcagtcgtg	Protospacer
*. ***** **************************** *..*  .

64. spacer 1.4|238629|32|NZ_CP011602|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 10, identity: 0.688

cttctatgccggaaaggtcacgctcaacaatg	CRISPR spacer
tctctatgccggaaagggcatgctcgcgacca	Protospacer
..*************** **.****.  * ..

65. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 10, identity: 0.778

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
tggcgtaggccggataaggcgtttacgccgcatccggcacttgtg	Protospacer
  ****** **************************** * ..  .

66. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 10, identity: 0.778

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
ccatgtaggccggataaggcgtttacgccgcatccggcaattgtg	Protospacer
 *..**** **************************** **..  .

67. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 10, identity: 0.778

acgcgtagcccggataaggcgtttacgccgcatccgg---gaacccga	CRISPR spacer
gtttgtaggccggataaggcgttcacgccgcatccggtatgaacg---	Protospacer
.. .**** **************.*************   ****

68. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 10, identity: 0.778

acgcgtagcccggataaggcgtttacgccgcatccgg---gaacccga	CRISPR spacer
ctacgtaggccggataaggcgttcacgccgcatccggcataaact---	Protospacer
 ..***** **************.*************   .***.

69. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 10, identity: 0.778

acgcgtagcccggataaggcgtttacgccgcatccgg---gaacccga	CRISPR spacer
ctacgtaggccggataaggcgttcacgccgcatccggcataaact---	Protospacer
 ..***** **************.*************   .***.

70. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 10, identity: 0.778

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
atccgtaggccggataaggcgttcacgccgcatccggcagtcgtg	Protospacer
*. ***** **************.************* *..*  .

71. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 10, identity: 0.778

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
atccgtaggccggataaggcgttcacgccgcatccggcagtcgtg	Protospacer
*. ***** **************.************* *..*  .

72. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 10, identity: 0.778

acgcgtagcccggataaggcgtttacgccgcatccgg---gaacccga	CRISPR spacer
ctacgtaggccggataaggcgttcacgccgcatccggcataaact---	Protospacer
 ..***** **************.*************   .***.

73. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 10, identity: 0.778

acgcgtagcccggataaggcgtttacgccgcatccgg---gaacccga	CRISPR spacer
ctacgtaggccggataaggcgttcacgccgcatccggcataaact---	Protospacer
 ..***** **************.*************   .***.

74. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 10, identity: 0.778

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
atccgtaggccggataaggcgttcacgccgcatccggcagtcgtg	Protospacer
*. ***** **************.************* *..*  .

75. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 10, identity: 0.778

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
atccgtaggccggataaggcgttcacgccgcatccggcagtcgtg	Protospacer
*. ***** **************.************* *..*  .

76. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 10, identity: 0.778

acgcgtagcccggataaggcgtttacgccgcatccgg---gaacccga	CRISPR spacer
ctacgtaggccggataaggcgttcacgccgcatccggcataaact---	Protospacer
 ..***** **************.*************   .***.

77. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 10, identity: 0.778

acgcgtagcccggataaggcgtttacgccgcatccgg---gaacccga	CRISPR spacer
ctacgtaggccggataaggcgttcacgccgcatccggcataaact---	Protospacer
 ..***** **************.*************   .***.

78. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 10, identity: 0.778

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
atccgtaggccggataaggcgttcacgccgcatccggcagtcgtg	Protospacer
*. ***** **************.************* *..*  .

79. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 10, identity: 0.778

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
atccgtaggccggataaggcgttcacgccgcatccggcagtcgtg	Protospacer
*. ***** **************.************* *..*  .

80. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 10, identity: 0.778

acgcgtagcccggataaggcgtttacgccgcatccgg---gaacccga	CRISPR spacer
ctacgtaggccggataaggcgttcacgccgcatccggcataaact---	Protospacer
 ..***** **************.*************   .***.

81. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 10, identity: 0.778

acgcgtagcccggataaggcgtttacgccgcatccgg---gaacccga	CRISPR spacer
ctacgtaggccggataaggcgttcacgccgcatccggcataaact---	Protospacer
 ..***** **************.*************   .***.

82. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 10, identity: 0.778

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
atccgtaggccggataaggcgttcacgccgcatccggcagtcgtg	Protospacer
*. ***** **************.************* *..*  .

83. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 10, identity: 0.778

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
atccgtaggccggataaggcgttcacgccgcatccggcagtcgtg	Protospacer
*. ***** **************.************* *..*  .

84. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 10, identity: 0.778

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
gaatgtaggccggataaggcgtttacgccgcatccggcaatcaac	Protospacer
. ..**** **************************** **.* .

85. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 10, identity: 0.778

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
atttgtaggccggataaggcgtttacgccgcatccggcaccagct	Protospacer
*. .**** **************************** * *

86. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 11, identity: 0.756

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
ttttgtaggccggataaggcgtttacgccgcatccggcattttgt	Protospacer
 . .**** **************************** * ...*

87. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 11, identity: 0.756

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga--	CRISPR spacer
ttttgtaggccggataaggcgttcacgccgcatccggca--ttgact	Protospacer
 . .**** **************.************* *  ..**

88. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 11, identity: 0.756

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
ttttgtaggccggataaggcgtttacgccgcatccggcaatggtg	Protospacer
 . .**** **************************** **.   .

89. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 11, identity: 0.756

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
tggcgtaggccagataaggcgtttacgccgcatccggcatttgtg	Protospacer
  ****** **.************************* * ..  .

90. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 11, identity: 0.756

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
ttttgtaggccggataaggcgtttacgccgcatccggcataaaca	Protospacer
 . .**** **************************** *     *

91. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 11, identity: 0.756

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
gtgcgtaggccggataaggcgttcacgccgcatccggcatttgag	Protospacer
..****** **************.************* * .. ..

92. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 11, identity: 0.756

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
aaatgtaggccggataaggcgtttacgccgcatccggcatttgct	Protospacer
* ..**** **************************** * ..

93. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.733

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
gaatgtaggccggataaagcgtttacgccgcatccggcagtcatg	Protospacer
. ..**** ********.******************* *..*  .

94. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.733

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
ttttgtaggacggataaggcgtttacgccgcatccggcagttgta	Protospacer
 . .****  *************************** *...  *

95. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.733

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
atcggtaggccggataaggcgtttatgccgcatccggcagttatg	Protospacer
*.  **** ****************.*********** *...  .

96. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.733

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
ttttgtaggacggataaggcgtttacgccgcatccggcagttgta	Protospacer
 . .****  *************************** *...  *

97. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.733

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
atcggtaggccggataaggcgtttatgccgcatccggcagttatg	Protospacer
*.  **** ****************.*********** *...  .

98. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.733

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
ttttgtaggacggataaggcgtttacgccgcatccggcagttgta	Protospacer
 . .****  *************************** *...  *

99. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.733

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
atcggtaggccggataaggcgtttatgccgcatccggcagttatg	Protospacer
*.  **** ****************.*********** *...  .

100. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.733

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
ttttgtaggacggataaggcgtttacgccgcatccggcagttgta	Protospacer
 . .****  *************************** *...  *

101. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.733

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
atcggtaggccggataaggcgtttatgccgcatccggcagttatg	Protospacer
*.  **** ****************.*********** *...  .

102. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to MG065686 (UNVERIFIED: Campylobacter phage A18a, complete genome) position: , mismatch: 12, identity: 0.733

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
tcttgtaggccggataaggcgcttacgccgcatccggcgctgccc	Protospacer
 * .**** ************.*************** . . *

103. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to MG065691 (UNVERIFIED: Campylobacter phage A11a, complete genome) position: , mismatch: 12, identity: 0.733

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
tcttgtaggccggataaggcgcttacgccgcatccggcgctgccc	Protospacer
 * .**** ************.*************** . . *

104. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to MF374379 (Escherichia phage DN1, complete genome) position: , mismatch: 12, identity: 0.733

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
gtttgtaggccggataaggcgttcacgccgcatccggcataaaca	Protospacer
.. .**** **************.************* *     *

105. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 13, identity: 0.711

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
gtttgtaggccggataaggcgttcacgccgcatccggcattttac	Protospacer
.. .**** **************.************* * ....

106. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 13, identity: 0.711

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
----gtagaccggataagacgtttacgccgcatccggcatttgtg	Protospacer
    **** *********.****************** * ..  .

107. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 13, identity: 0.711

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
ttttgtaggtcggataaggcgtttacgccgcatccgacatcaacg	Protospacer
 . .**** .**************************. * *   .

108. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 13, identity: 0.711

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
ttttgtaggtcggataaggcgtttacgccgcatccgacatcaatg	Protospacer
 . .**** .**************************. * *   .

109. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 13, identity: 0.711

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
ctttgtaggacggataaggcgtttacgccgcatccggcagtggtg	Protospacer
 . .****  *************************** *..   .

110. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 14, identity: 0.689

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
-----tagaccggataagacgtttacgccgcatccggcatttgtg	Protospacer
     *** *********.****************** * ..  .

111. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 14, identity: 0.689

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
-----tagaccggataagacgtttacgccgcatccggcatttgtg	Protospacer
     *** *********.****************** * ..  .

112. spacer 6.1|4700542|45|NZ_CP011602|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 14, identity: 0.689

acgcgtagcccggataaggcgtttacgccgcatccgggaacccga	CRISPR spacer
-----tagaccggataagacgtttacgccgcatccggcatttgtg	Protospacer
     *** *********.****************** * ..  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

100866 : 108206

Stx2-converting_phage(42.86%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047368978.1\|100866_101229_+	GtrA family protein	B9UDL8	Salmonella_phage	5.8e-41	65.8
WP_047368979.1\|101225_102155_+	glycosyltransferase family 2 protein	U5P087	Shigella_phage	1.5e-154	88.8
WP_047368980.1\|102151_103780_+	hypothetical protein	B9UDL6	Salmonella_phage	6.2e-74	32.7
WP_000839182.1\|104064_104469_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	1.6e-68	97.8
WP_000612626.1\|104465_104813_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_008786790.1\|104861_106400_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.7e-278	93.8
WP_120773466.1\|107085_108206_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.5e-50	43.3

DBSCAN-SWA_2

359403 : 430392

Escherichia_phage(28.89%)

lysis,holin,portal,integrase,transposase,head,capsid,plate,tail,terminase,tRNA

attL 360349:360365|attR 408601:408617

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085929673.1\|359403_360571_+\|transposase	IS3-like element ISEc52 family transposase	Q716C2	Shigella_phage	1.9e-178	96.1
360349:360365	attL	NA	NA	NA	NA
WP_047369170.1\|360610_361456_+	hypothetical protein	NA	NA	NA	NA
WP_047369171.1\|361733_361940_+	AlpA family transcriptional regulator	A0A0R6PGY4	Moraxella_phage	2.2e-05	42.9
WP_047369172.1\|364554_365037_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.0e-29	48.1
WP_071845833.1\|365155_365632_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_047369174.1\|365621_365912_+	RnfH family protein	NA	NA	NA	NA
WP_047369175.1\|365918_366434_-	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA
WP_047369176.1\|366492_366834_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_047369177.1\|366982_368644_-	DNA repair protein RecN	NA	NA	NA	NA
WP_047369178.1\|368730_369609_-	NAD(+) kinase	NA	NA	NA	NA
WP_047369179.1\|369731_370325_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_047369180.1\|370371_371658_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_047369181.1\|371671_372460_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_047369182.1\|372628_373990_+	signal recognition particle protein	NA	NA	NA	NA
WP_039077560.1\|374249_374498_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_047369183.1\|374516_375065_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_047369184.1\|375095_375863_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_002914145.1\|375902_376250_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_047373186.1\|376395_376614_-	DNA-binding transcriptional regulator	Q37973	Salmonella_virus	1.1e-31	84.7
WP_047369185.1\|376698_377883_-	phage late control D family protein	Q7Y4C6	Escherichia_virus	3.7e-161	77.4
WP_047369186.1\|377882_378359_-\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	8.7e-61	70.7
WP_047369187.1\|378370_380842_-\|tail	phage tail tape measure protein	Q7Y4C8	Escherichia_virus	1.4e-255	64.4
WP_177328623.1\|380834_380990_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	3.7e-21	92.2
WP_047369188.1\|380986_381262_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	4.3e-36	86.8
WP_039078129.1\|381323_381842_-\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.1e-88	94.2
WP_047369189.1\|381854_383045_-\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	3.0e-203	88.9
WP_047369190.1\|383173_383719_-\|tail	tail fiber assembly protein	A0A0A7NRZ7	Enterobacteria_phage	1.1e-35	46.3
WP_120785354.1\|383718_385665_-\|tail	phage tail protein	Q37842	Escherichia_phage	1.2e-103	56.8
WP_047369191.1\|385675_386206_-\|tail	phage tail protein I	Q858V5	Yersinia_virus	3.5e-95	89.8
WP_047369192.1\|386198_387107_-\|plate	baseplate assembly protein	A0A0F7LCQ9	Escherichia_phage	3.1e-139	84.4
WP_047369193.1\|387111_387459_-	GPW/gp25 family protein	A0A0F7LDQ1	Escherichia_phage	5.7e-46	78.3
WP_047369194.1\|387455_388097_-\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	4.5e-97	84.5
WP_047369195.1\|388162_388615_-	phage virion morphogenesis protein	O80313	Escherichia_phage	3.8e-50	67.8
WP_047369196.1\|388607_389075_-\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	2.7e-67	81.3
WP_047369197.1\|389182_389605_-\|lysis	LysB family phage lysis regulatory protein	Q7Y4E2	Escherichia_virus	2.1e-42	64.5
WP_052958809.1\|389589_390021_-	hypothetical protein	NA	NA	NA	NA
WP_047369198.1\|390017_390530_-	lysozyme	A0A218M4K3	Erwinia_phage	6.7e-75	80.6
WP_047369199.1\|390513_390750_-\|holin	holin	A0A218M4L5	Erwinia_phage	1.5e-10	51.7
WP_047369200.1\|390740_390944_-\|tail	tail protein X	A0A0F7LCN2	Escherichia_phage	8.0e-24	77.6
WP_047373189.1\|390943_391450_-\|head	head completion/stabilization protein	M1SNN6	Escherichia_phage	3.6e-73	79.8
WP_047369201.1\|391546_392305_-\|terminase	terminase endonuclease subunit	Q94MI7	Enterobacteria_phage	5.4e-81	65.9
WP_039078144.1\|392308_393466_-\|capsid	phage major capsid protein, P2 family	A0A0M4R4W2	Salmonella_phage	4.9e-126	61.2
WP_047369202.1\|393502_394360_-\|capsid	GPO family capsid scaffolding protein	Q6K1I7	Salmonella_virus	7.6e-116	74.0
WP_047369203.1\|394536_396306_+\|terminase	terminase ATPase subunit family protein	A0A0F7LCK3	Escherichia_phage	1.8e-300	85.7
WP_047369204.1\|396305_397343_+\|portal	phage portal protein	Q6K1J0	Salmonella_virus	5.2e-159	77.3
WP_047369205.1\|397775_398006_-	DinI-like family protein	A0A218M4I0	Erwinia_phage	7.9e-28	76.3
WP_032419998.1\|398009_398195_-	hypothetical protein	A0A0M5M1G5	Salmonella_phage	6.0e-18	77.0
WP_071845838.1\|398309_400538_-	replication endonuclease	A0A218M4H2	Erwinia_phage	0.0e+00	88.7
WP_047369206.1\|400539_400761_-	TraR/DksA family transcriptional regulator	A0A0M4S5Q7	Salmonella_phage	3.3e-31	89.0
WP_047369207.1\|400760_400988_-	DUF2732 domain-containing protein	A0A0M3UL87	Salmonella_phage	1.4e-29	94.7
WP_047369208.1\|401055_401394_-	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	3.6e-53	92.0
WP_071845839.1\|401357_401558_-	DUF2724 domain-containing protein	Q6K1F7	Salmonella_virus	1.5e-30	92.4
WP_047369209.1\|401565_402075_-	phage regulatory CII family protein	Q6K1F8	Salmonella_virus	8.9e-80	87.6
WP_047369210.1\|402125_402479_-	regulatory phage cox family protein	Q6K1F9	Salmonella_virus	2.5e-57	99.1
WP_047369211.1\|402599_403436_+	phage repressor protein CI	Q6K1G0	Salmonella_virus	3.5e-121	78.4
WP_047369212.1\|403445_403784_+	DUF2511 domain-containing protein	NA	NA	NA	NA
WP_047369213.1\|403807_404857_+\|integrase	site-specific integrase	A0A0M4S6G4	Salmonella_phage	2.8e-189	90.8
WP_047369214.1\|405430_406501_+	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.1e-91	52.7
WP_047369215.1\|406510_407632_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_047369216.1\|407701_408574_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_047369217.1\|408570_409731_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
408601:408617	attR	NA	NA	NA	NA
WP_103245904.1\|409830_409878_-	pheA operon leader peptide PheL	NA	NA	NA	NA
WP_047369218.1\|409984_410317_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_047369219.1\|410583_411321_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_047369220.1\|411451_412432_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_047369221.1\|412428_413160_+	polyphenol oxidase	NA	NA	NA	NA
WP_047369222.1\|413289_415863_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	9.9e-127	35.0
WP_047369223.1\|421518_421974_+	DUF4385 domain-containing protein	A0A222YVL1	Synechococcus_phage	1.6e-32	49.0
WP_047369224.1\|422098_423400_+	MFS transporter	Q6JIH2	Burkholderia_virus	9.1e-44	29.4
WP_047373191.1\|423396_423720_-	YfiM family lipoprotein	NA	NA	NA	NA
WP_047369225.1\|423766_425122_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_047369226.1\|425236_427897_-	protein lysine acetyltransferase	NA	NA	NA	NA
WP_047373192.1\|427929_428628_-	DTW domain-containing protein	NA	NA	NA	NA
WP_047369227.1\|428695_429115_-	thioredoxin TrxC	A0A1J0GW78	Streptomyces_phage	2.0e-13	41.5
WP_047369228.1\|429318_430392_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_3

976002 : 982347

Enterobacteria_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047369616.1\|976002_977412_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	6.4e-19	30.9
WP_041851958.1\|977590_978484_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	2.8e-44	39.9
WP_047369617.1\|978890_979979_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.0e-100	53.5
WP_047369618.1\|979997_980867_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.2e-110	68.1
WP_047369619.1\|980894_981785_+	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	2.1e-23	31.8
WP_047369620.1\|981798_982347_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.4e-53	56.5

DBSCAN-SWA_4

1110002 : 1192786

100

Enterobacteria_phage(35.29%)

holin,portal,transposase,protease,tail,integrase,terminase

attL 1101189:1101206|attR 1148156:1148173

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1101189:1101206	attL	NA	NA	NA	NA
WP_047369720.1\|1110002_1111277_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	8.8e-68	38.1
WP_047369721.1\|1111864_1112782_+	nitrogen assimilation transcriptional regulator NAC	NA	NA	NA	NA
WP_041851852.1\|1112883_1113834_+	HTH-type transcriptional regulator Cbl	NA	NA	NA	NA
WP_047369722.1\|1113885_1114362_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_047369723.1\|1114453_1115377_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_047369724.1\|1115605_1116403_-	DgsA anti-repressor MtfA	NA	NA	NA	NA
WP_047373227.1\|1116666_1117695_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	4.3e-89	52.7
WP_071845857.1\|1117663_1117912_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_082137029.1\|1117982_1120454_-	exonuclease	K7P6V4	Enterobacteria_phage	3.3e-127	43.4
WP_177328613.1\|1120594_1120945_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_047369725.1\|1120948_1121284_-	hypothetical protein	NA	NA	NA	NA
WP_047369726.1\|1121452_1121638_-	DUF1482 family protein	NA	NA	NA	NA
WP_047373231.1\|1122086_1122479_-	helix-turn-helix domain-containing protein	H6WRX4	Salmonella_phage	2.1e-36	59.1
WP_071845858.1\|1122601_1122853_+	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	5.1e-20	59.7
WP_047369727.1\|1122833_1123388_+	hypothetical protein	NA	NA	NA	NA
WP_047369728.1\|1123442_1124441_+	hypothetical protein	A0A0U2RT81	Escherichia_phage	8.2e-45	57.8
WP_139153694.1\|1124352_1124898_+	replication protein	A0A0U2JGJ0	Escherichia_phage	6.2e-63	70.6
WP_047369730.1\|1124911_1125352_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_047369731.1\|1125345_1125657_+	hypothetical protein	NA	NA	NA	NA
WP_047369732.1\|1125653_1126001_+	hypothetical protein	NA	NA	NA	NA
WP_047373232.1\|1126180_1126594_+	DNA cytosine methyltransferase	K7PJT8	Enterobacteria_phage	5.4e-43	71.3
WP_047373233.1\|1126788_1127850_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	5.4e-103	59.8
WP_047369733.1\|1127888_1128122_+	hypothetical protein	H6WRY6	Salmonella_phage	3.1e-19	52.7
WP_047369734.1\|1128256_1128727_+	hypothetical protein	NA	NA	NA	NA
WP_052958817.1\|1128919_1129312_+	DNA-binding protein	K7PHB4	Enterobacterial_phage	1.8e-16	49.0
WP_047369735.1\|1129308_1129509_+	hypothetical protein	H6WRY8	Salmonella_phage	1.3e-13	58.5
WP_047369736.1\|1129511_1129880_+	RusA family crossover junction endodeoxyribonuclease	K7P6W0	Enterobacteria_phage	3.2e-39	60.7
WP_047369737.1\|1129864_1130890_+	DUF968 domain-containing protein	S5MW46	Escherichia_phage	4.5e-107	54.0
WP_047369738.1\|1130900_1131506_+	hypothetical protein	H9C175	Pectobacterium_phage	9.6e-89	75.6
WP_071845859.1\|1132000_1132837_+	hypothetical protein	A0A1B2IGT1	Erwinia_phage	1.7e-112	75.8
WP_167337870.1\|1132833_1132986_+	hypothetical protein	NA	NA	NA	NA
WP_047369739.1\|1133663_1133879_+\|holin	class II holin family protein	Q9ZWW2	Enterobacteria_phage	5.3e-26	78.9
WP_047369740.1\|1133878_1134415_+	lysozyme	K7PM52	Enterobacteria_phage	6.7e-78	77.1
WP_120785444.1\|1134405_1134960_+	hypothetical protein	K7PHH7	Enterobacteria_phage	2.1e-50	60.1
WP_047369741.1\|1134956_1135181_+	hypothetical protein	A0A2H4J182	uncultured_Caudovirales_phage	1.7e-19	61.4
WP_047373237.1\|1135242_1135584_+	hypothetical protein	G8C7T6	Escherichia_phage	5.5e-33	61.1
WP_047369742.1\|1135861_1136053_+	hypothetical protein	NA	NA	NA	NA
WP_052958818.1\|1136211_1136877_+	hypothetical protein	M9NZE9	Enterobacteria_phage	9.4e-21	64.5
WP_047369743.1\|1137096_1137588_+	DUF1441 family protein	K7PJY2	Enterobacterial_phage	2.4e-66	83.4
WP_047369744.1\|1137587_1139708_+\|terminase	phage terminase large subunit family protein	K7PH52	Enterobacterial_phage	0.0e+00	82.6
WP_047369745.1\|1139704_1139920_+	hypothetical protein	A5LH28	Enterobacteria_phage	1.6e-22	77.1
WP_047369746.1\|1139919_1141428_+\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	7.1e-226	76.9
WP_120785372.1\|1141351_1143376_+\|protease	Clp protease ClpP	K7PKX4	Enterobacterial_phage	0.0e+00	81.9
WP_047369748.1\|1143457_1143781_+	DUF2190 family protein	NA	NA	NA	NA
WP_047369749.1\|1143773_1144049_+	hypothetical protein	K7PH55	Enterobacterial_phage	2.6e-17	55.0
WP_047369750.1\|1144058_1144613_+\|tail	phage tail protein	K7P7A8	Enterobacteria_phage	1.7e-60	76.7
WP_047369751.1\|1144609_1145014_+\|tail	Minor tail protein U	K7PHM6	Enterobacterial_phage	1.5e-45	64.9
WP_047369752.1\|1145022_1145754_+\|tail	phage tail protein	M9NYX0	Enterobacteria_phage	3.4e-88	69.0
WP_047369753.1\|1145789_1146206_+\|tail	phage minor tail protein G	K7PJY4	Enterobacterial_phage	9.1e-22	47.9
WP_071845860.1\|1146226_1146556_+\|tail	phage tail assembly protein T	K7PHE1	Enterobacteria_phage	1.2e-21	51.9
WP_120785445.1\|1147595_1149263_+\|tail	phage tail tape measure protein	E4WL33	Enterobacteria_phage	1.2e-125	50.7
1148156:1148173	attR	NA	NA	NA	NA
WP_047369756.1\|1149272_1149620_+\|tail	phage tail protein	K7PJT2	Enterobacteria_phage	3.2e-36	62.6
WP_047369757.1\|1149616_1150375_+\|tail	phage minor tail protein L	K7PJS0	Enterobacterial_phage	7.5e-123	80.2
WP_047369758.1\|1150377_1151088_+	C40 family peptidase	K7P6F5	Enterobacteria_phage	9.7e-125	85.8
WP_052958819.1\|1151148_1151706_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_047369759.1\|1151765_1152383_+\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	1.4e-66	65.9
WP_082137032.1\|1152446_1156598_+	DUF1983 domain-containing protein	Q9MCR7	Enterobacteria_phage	0.0e+00	63.2
WP_082137119.1\|1157375_1157798_+\|tail	tail fiber domain-containing protein	A0A076YQN2	Escherichia_phage	1.7e-28	54.9
WP_047369760.1\|1157901_1158141_+	hypothetical protein	K7P7N3	Enterobacteria_phage	9.8e-21	60.3
WP_047369761.1\|1158140_1158425_+	hypothetical protein	K7PGV5	Enterobacterial_phage	3.1e-13	42.2
WP_047369762.1\|1158767_1159844_-	porin	Q1MVN1	Enterobacteria_phage	5.0e-96	50.5
WP_047373242.1\|1160505_1160790_+	hypothetical protein	NA	NA	NA	NA
WP_047369763.1\|1160842_1161544_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	3.3e-08	29.1
WP_047369764.1\|1161561_1162026_+	very short patch repair endonuclease	E5E3X5	Burkholderia_phage	6.1e-35	50.3
WP_047369765.1\|1162029_1162941_-	drug/metabolite exporter YedA	NA	NA	NA	NA
WP_047369766.1\|1163133_1164045_+	DUF808 domain-containing protein	NA	NA	NA	NA
WP_047369767.1\|1164124_1164307_+	DUF2158 domain-containing protein	NA	NA	NA	NA
WP_082137034.1\|1164260_1166123_+	cellulose biosynthesis regulator YedQ	A0A127AWB9	Bacillus_phage	6.9e-21	39.0
WP_047369769.1\|1166077_1166917_-	mannosyl-3-phosphoglycerate phosphatase-related protein	NA	NA	NA	NA
WP_047369770.1\|1167214_1167445_-	YodD family peroxide/acid resistance protein	NA	NA	NA	NA
WP_047369771.1\|1167573_1167762_+	protein DsrB	NA	NA	NA	NA
WP_041851838.1\|1167803_1168427_-	transcriptional regulator RcsA	NA	NA	NA	NA
WP_047369772.1\|1168709_1169495_-	flagellar type III secretion system protein FliR	NA	NA	NA	NA
WP_041851836.1\|1169502_1169772_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA
WP_047369773.1\|1169781_1170519_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA
WP_047369774.1\|1170518_1170893_-	flagellar type III secretion system protein FliO	NA	NA	NA	NA
WP_047369775.1\|1170901_1171315_-	flagellar motor switch protein FliN	NA	NA	NA	NA
WP_047369776.1\|1171311_1172316_-	flagellar motor switch protein FliM	NA	NA	NA	NA
WP_047369777.1\|1172320_1172800_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA
WP_047369778.1\|1172904_1174188_-	flagellar hook length control protein FliK	NA	NA	NA	NA
WP_047369779.1\|1174184_1174628_-	flagella biosynthesis chaperone FliJ	NA	NA	NA	NA
WP_047369780.1\|1174649_1176020_-	flagellum-specific ATP synthase FliI	NA	NA	NA	NA
WP_047369781.1\|1176019_1176724_-	flagellar assembly protein FliH	NA	NA	NA	NA
WP_047369782.1\|1176716_1177724_-	flagellar motor switch protein FliG	NA	NA	NA	NA
WP_047369783.1\|1177713_1179405_-	flagellar M-ring protein FliF	NA	NA	NA	NA
WP_047369784.1\|1179632_1179953_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA
WP_038918153.1\|1180134_1180593_+\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	4.5e-14	32.3
WP_047369785.1\|1180756_1180987_-	sulfurtransferase-like selenium metabolism protein YedF	NA	NA	NA	NA
WP_047369786.1\|1180983_1182189_-	selenium metabolism membrane protein YedE/FdhT	NA	NA	NA	NA
WP_047369787.1\|1182378_1182792_+	lipoprotein	NA	NA	NA	NA
WP_047369788.1\|1182831_1184319_-	alpha-amylase	NA	NA	NA	NA
WP_047369789.1\|1184385_1184748_-	flagella biosynthesis regulatory protein FliT	NA	NA	NA	NA
WP_047369790.1\|1184747_1185158_-	flagellar export chaperone FliS	NA	NA	NA	NA
WP_047369791.1\|1185167_1186604_-	flagellar filament capping protein FliD	NA	NA	NA	NA
WP_187173161.1\|1186935_1187793_+	flagellin FliC	NA	NA	NA	NA
WP_082137035.1\|1188034_1188886_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.8e-77	55.0
WP_008786790.1\|1188924_1190463_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.7e-278	93.8
WP_000612626.1\|1190511_1190859_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_000839182.1\|1190855_1191260_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	1.6e-68	97.8
WP_047369795.1\|1191817_1192786_+\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

1421173 : 1435497

Tupanvirus(11.11%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047369987.1\|1421173_1423102_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.8e-128	37.1
WP_071845866.1\|1423105_1423648_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	2.2e-15	32.9
WP_001124225.1\|1423744_1423942_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_013366084.1\|1423992_1424349_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_167337874.1\|1424525_1424642_+	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_047369988.1\|1424767_1425751_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	2.9e-34	43.2
WP_047369989.1\|1425765_1428153_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	1.2e-06	25.0
WP_006820203.1\|1428157_1428457_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
WP_047369990.1\|1428556_1429537_+	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
WP_047369991.1\|1429744_1430296_+	glutathione peroxidase	NA	NA	NA	NA
WP_120785376.1\|1430292_1431042_+	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	7.9e-08	29.8
WP_047369993.1\|1431118_1431580_+	C40 family peptidase	A0A217EQL1	Bacillus_phage	1.9e-12	35.3
WP_047369994.1\|1431904_1432615_+	EAL domain-containing protein	NA	NA	NA	NA
WP_047369995.1\|1432676_1434119_+	YdiU family protein	A0A075BSJ0	Microcystis_phage	3.2e-58	37.2
WP_047369996.1\|1434123_1434315_-	hemin uptake protein HemP	NA	NA	NA	NA
WP_047373254.1\|1434450_1435497_-	3-deoxy-7-phosphoheptulonate synthase AroH	S4W5F1	Pandoravirus	5.7e-81	46.0

DBSCAN-SWA_6

2120197 : 2171676

Leptospira_phage(22.22%)

integrase,tRNA,transposase

attL 2120127:2120186|attR 2156842:2158062

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2120127:2120186	attL	NA	NA	NA	NA
WP_120773466.1\|2120197_2121317_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.5e-50	43.3
WP_047370546.1\|2122057_2122360_-	hypothetical protein	NA	NA	NA	NA
WP_139153703.1\|2123121_2123361_-	hypothetical protein	NA	NA	NA	NA
WP_047370548.1\|2123439_2124255_-	hypothetical protein	NA	NA	NA	NA
WP_047370549.1\|2127250_2128105_-	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	8.3e-46	39.1
WP_047370550.1\|2128142_2128952_-	tetratricopeptide repeat-containing protein	NA	NA	NA	NA
WP_047370551.1\|2128955_2129348_-	SirB family protein	NA	NA	NA	NA
WP_047370552.1\|2129354_2130194_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_047370553.1\|2130193_2131276_-	peptide chain release factor 1	W8EDB3	Pseudomonas_phage	8.7e-08	42.9
WP_047370554.1\|2131312_2132569_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_047370555.1\|2132770_2133394_+	lipoprotein localization protein LolB	NA	NA	NA	NA
WP_120785386.1\|2133390_2134260_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_090085106.1\|2134384_2135332_+	ribose-phosphate diphosphokinase	A0A2K9L2G2	Tupanvirus	6.6e-44	37.8
WP_071845882.1\|2135454_2137134_+	C4-dicarboxylic acid transporter DauA	A0A2H4J153	uncultured_Caudovirales_phage	1.1e-20	23.6
WP_047370557.1\|2137128_2138178_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_039079205.1\|2138295_2138571_-	stress-induced protein YchH	NA	NA	NA	NA
WP_047370558.1\|2138844_2139429_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_047370559.1\|2139555_2140650_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_047370560.1\|2140864_2142058_+\|integrase	tyrosine-type recombinase/integrase	A0A1B0VMI6	Pseudomonas_phage	7.7e-74	38.1
WP_047370561.1\|2142492_2143473_-	quinone oxidoreductase	NA	NA	NA	NA
WP_047370562.1\|2143580_2144447_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_047370563.1\|2144770_2145460_+	hypothetical protein	NA	NA	NA	NA
WP_047370564.1\|2145825_2146731_-	hypothetical protein	NA	NA	NA	NA
WP_047370565.1\|2147184_2148423_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_047370566.1\|2148584_2152409_-	SIR2 family protein	NA	NA	NA	NA
WP_047370567.1\|2152771_2153158_-	hypothetical protein	NA	NA	NA	NA
WP_000219087.1\|2153830_2155069_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_120773466.1\|2155709_2156830_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.5e-50	43.3
WP_047370569.1\|2157123_2158134_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
2156842:2158062	attR	NA	NA	NA	NA
WP_047370570.1\|2158241_2159966_+	GH32 C-terminal domain-containing protein	NA	NA	NA	NA
WP_047370571.1\|2159974_2160937_+	carbohydrate kinase	NA	NA	NA	NA
WP_047370572.1\|2160998_2162387_-	carbohydrate porin	NA	NA	NA	NA
WP_047370573.1\|2162466_2163810_-	fructotransferase	NA	NA	NA	NA
WP_047370574.1\|2163899_2165321_-	MFS transporter	NA	NA	NA	NA
WP_047370575.1\|2168302_2169148_-	hypothetical protein	NA	NA	NA	NA
WP_047370576.1\|2169230_2169722_-	hypothetical protein	NA	NA	NA	NA
WP_047370577.1\|2169733_2169925_-	AlpA family transcriptional regulator	A0A1V0E7Y1	Vibrio_phage	6.4e-07	47.3
WP_047370578.1\|2170249_2170501_+	hypothetical protein	NA	NA	NA	NA
WP_120785350.1\|2170526_2171676_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.7e-49	41.4

DBSCAN-SWA_7

2664209 : 2724891

Enterobacteria_phage(23.81%)

protease,holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052958850.1\|2664209_2664671_+\|transposase	transposase	NA	NA	NA	NA
WP_047370977.1\|2664809_2665697_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_047370978.1\|2665834_2666578_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_047370979.1\|2666591_2666993_+	VOC family protein	NA	NA	NA	NA
WP_047370980.1\|2667075_2668071_+	saccharopine dehydrogenase NADP-binding domain-containing protein	NA	NA	NA	NA
WP_047370981.1\|2668211_2668607_+	VOC family protein	NA	NA	NA	NA
WP_047373328.1\|2668912_2669245_+	DUF596 domain-containing protein	NA	NA	NA	NA
WP_047370982.1\|2669523_2669766_+	hypothetical protein	NA	NA	NA	NA
WP_047370983.1\|2670039_2670705_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_047370984.1\|2670706_2671402_-	hypothetical protein	NA	NA	NA	NA
WP_085929673.1\|2671430_2672599_-\|transposase	IS3-like element ISEc52 family transposase	Q716C2	Shigella_phage	1.9e-178	96.1
WP_047370985.1\|2672971_2673865_-	hypothetical protein	NA	NA	NA	NA
WP_047370986.1\|2674399_2676028_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_047370987.1\|2676304_2676964_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	3.1e-40	49.0
WP_047370988.1\|2677055_2677382_+	sulfurtransferase TusE	NA	NA	NA	NA
WP_047370989.1\|2677378_2677672_-	acylphosphatase	NA	NA	NA	NA
WP_120785457.1\|2677728_2678457_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_047370991.1\|2678527_2679082_-	kinase inhibitor	NA	NA	NA	NA
WP_047370992.1\|2679290_2680502_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_039078594.1\|2680562_2680880_+	heat shock protein HspQ	NA	NA	NA	NA
WP_047370993.1\|2680905_2681319_-	CoA-binding protein	NA	NA	NA	NA
WP_047370994.1\|2681472_2682135_+	DUF2057 family protein	NA	NA	NA	NA
WP_039078592.1\|2682246_2682705_+	methylglyoxal synthase	NA	NA	NA	NA
WP_047370995.1\|2682735_2684790_-	DNA helicase IV	A7KV33	Bacillus_phage	6.1e-18	27.2
WP_047370996.1\|2684913_2685360_+	YccF domain-containing protein	NA	NA	NA	NA
WP_047370997.1\|2685376_2687506_+	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_047370998.1\|2687517_2688123_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_047370999.1\|2688341_2688842_+	cell division inhibitor SulA	NA	NA	NA	NA
WP_047371000.1\|2689208_2690267_+	porin OmpA	NA	NA	NA	NA
WP_047371001.1\|2690341_2690794_-	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_047371002.1\|2690977_2692738_+\|protease	Lon protease family protein	NA	NA	NA	NA
WP_039078583.1\|2692807_2693326_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_039078582.1\|2693421_2693589_-	ribosome modulation factor	NA	NA	NA	NA
WP_047371003.1\|2693844_2694411_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_047371004.1\|2694407_2696048_-	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_047371005.1\|2696052_2697306_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_047371006.1\|2697320_2699228_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	4.0e-48	28.0
WP_047371007.1\|2699240_2701349_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_047371008.1\|2701448_2702558_+	YcbX family protein	NA	NA	NA	NA
WP_047371009.1\|2702554_2703097_-	cell division protein ZapC	NA	NA	NA	NA
WP_047371010.1\|2703265_2704276_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_047371011.1\|2704523_2705105_+	NADPH-dependent FMN reductase	NA	NA	NA	NA
WP_047371012.1\|2705172_2707785_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	1.7e-20	22.0
WP_047371013.1\|2708200_2708440_+	DinI family protein	K7P6H1	Enterobacteria_phage	6.8e-30	81.0
WP_071845996.1\|2708721_2708820_+	DinI-like family protein	NA	NA	NA	NA
WP_047371014.1\|2710087_2710513_+	hypothetical protein	K7P834	Enterobacteria_phage	4.7e-26	47.3
WP_047371015.1\|2711367_2711592_-	hypothetical protein	A0A2H4J182	uncultured_Caudovirales_phage	2.3e-19	61.4
WP_047373330.1\|2711588_2712137_-	hypothetical protein	K7P6W1	Enterobacteria_phage	8.2e-47	65.7
WP_047371016.1\|2712136_2712649_-	lysozyme	I6PBN2	Cronobacter_phage	1.3e-49	62.3
WP_047371017.1\|2712648_2712864_-\|holin	class II holin family protein	A5LH82	Enterobacteria_phage	4.1e-26	78.9
WP_047371018.1\|2713095_2713359_+	hypothetical protein	NA	NA	NA	NA
WP_139153707.1\|2713784_2713988_-	hypothetical protein	NA	NA	NA	NA
WP_085949497.1\|2714053_2715201_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.3e-147	92.6
WP_047371019.1\|2715394_2716366_-	toprim domain-containing protein	A0A286N2Q0	Klebsiella_phage	1.1e-147	77.7
WP_047373331.1\|2716362_2717949_-	DEAD/DEAH box helicase	A0A286N2P9	Klebsiella_phage	3.8e-238	80.3
WP_047371021.1\|2718627_2718822_-	Cro/Cl family transcriptional regulator	A0A0U1UNM4	Pseudomonas_phage	1.4e-06	48.2
WP_047371022.1\|2718915_2719617_+	helix-turn-helix domain-containing protein	K7P8B2	Enterobacteria_phage	3.0e-78	62.4
WP_047371023.1\|2719773_2720283_+	hypothetical protein	NA	NA	NA	NA
WP_047371024.1\|2720345_2720735_+	S24 family peptidase	F1C5A0	Cronobacter_phage	3.1e-24	50.0
WP_047371025.1\|2720832_2721033_+	hypothetical protein	NA	NA	NA	NA
WP_047371026.1\|2721019_2721379_+	hypothetical protein	NA	NA	NA	NA
WP_047371027.1\|2721368_2721602_+	hypothetical protein	A0A286SGR4	Klebsiella_phage	3.6e-12	48.6
WP_047371028.1\|2721832_2722339_+	hypothetical protein	F1C5A2	Cronobacter_phage	6.4e-54	60.1
WP_177328628.1\|2722393_2722627_+	hypothetical protein	NA	NA	NA	NA
WP_047371030.1\|2722623_2722989_+	hypothetical protein	NA	NA	NA	NA
WP_047371031.1\|2722981_2723305_+	hypothetical protein	NA	NA	NA	NA
WP_047373332.1\|2723312_2723546_+	excisionase family protein	A0A286S2A4	Klebsiella_phage	2.3e-35	89.6
WP_047371032.1\|2723601_2724891_+	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	4.9e-207	79.7

DBSCAN-SWA_8

3245417 : 3319010

Salmonella_phage(31.03%)

lysis,portal,integrase,transposase,coat,terminase

attL 3281972:3282021|attR 3317840:3317889

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000019450.1\|3245417_3246398_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.8e-185	99.1
WP_052958966.1\|3247415_3247952_+	citrate lyase holo-[acyl-carrier protein] synthase	NA	NA	NA	NA
WP_047371447.1\|3247926_3248799_+	triphosphoribosyl-dephospho-CoA synthase CitG	NA	NA	NA	NA
WP_120785404.1\|3248819_3249395_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_047371449.1\|3249458_3252053_+	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA
WP_047373361.1\|3252195_3253626_+	anion permease	NA	NA	NA	NA
WP_047371450.1\|3254203_3255343_+	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA
WP_047371451.1\|3255471_3256590_+	cytochrome c552	A0A125RNP0	Pseudomonas_phage	4.9e-22	32.4
WP_047371452.1\|3256586_3258020_+	AMP-binding protein	A0A2K9L3I8	Tupanvirus	5.3e-29	26.0
WP_041852336.1\|3258037_3258256_+	acyl carrier protein	NA	NA	NA	NA
WP_047371453.1\|3258634_3260179_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_120785465.1\|3260454_3261093_+	hypothetical protein	NA	NA	NA	NA
WP_071845910.1\|3261094_3261394_+	hypothetical protein	NA	NA	NA	NA
WP_047371456.1\|3261419_3263204_-	hybrid sensor histidine kinase/response regulator	A0A2K9L5I4	Tupanvirus	4.6e-14	24.0
WP_047371457.1\|3263200_3263833_-	response regulator transcription factor	NA	NA	NA	NA
WP_047371458.1\|3264011_3264326_+	lipoprotein	NA	NA	NA	NA
WP_047371459.1\|3264527_3267578_+	autotransporter domain-containing protein	NA	NA	NA	NA
WP_047371460.1\|3267938_3268142_+	hypothetical protein	NA	NA	NA	NA
WP_085949497.1\|3268511_3269658_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.3e-147	92.6
WP_047371461.1\|3270022_3270358_-	hypothetical protein	NA	NA	NA	NA
WP_008786790.1\|3271011_3272550_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.7e-278	93.8
WP_000612626.1\|3272598_3272946_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_000839182.1\|3272942_3273347_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	1.6e-68	97.8
WP_085929673.1\|3275401_3276570_-\|transposase	IS3-like element ISEc52 family transposase	Q716C2	Shigella_phage	1.9e-178	96.1
WP_120785405.1\|3276593_3277508_+	recombination-associated protein RdgC	A0A1W6JP69	Morganella_phage	2.0e-45	40.1
WP_052958875.1\|3277600_3277915_+	hypothetical protein	K7PJS4	Enterobacterial_phage	2.8e-07	63.5
WP_047371464.1\|3277904_3278744_+	hypothetical protein	K7PKM7	Enterobacterial_phage	1.3e-107	75.0
WP_052958876.1\|3279041_3279710_+	ead/Ea22-like family protein	A0A075B8K3	Enterobacteria_phage	1.6e-15	49.0
WP_047371466.1\|3279713_3280157_+	HNH endonuclease	E7EKU5	Edwardsiella_phage	2.3e-60	77.6
WP_047371467.1\|3280160_3280424_+	hypothetical protein	S4TNB5	Salmonella_phage	1.8e-31	73.6
WP_047371468.1\|3280433_3281408_+	hypothetical protein	A0A0M4RTV1	Salmonella_phage	2.6e-19	27.8
WP_047371469.1\|3281404_3281680_+	hypothetical protein	K7PKM4	Enterobacterial_phage	1.5e-20	54.9
WP_041852423.1\|3281707_3281899_+	AlpA family phage regulatory protein	NA	NA	NA	NA
3281972:3282021	attL	NA	NA	NA	NA
WP_047373365.1\|3282144_3282534_-	hypothetical protein	A0A077SK24	Escherichia_phage	1.0e-30	53.5
WP_047371470.1\|3285181_3285712_-	Rha family transcriptional regulator	Q38450	Enterobacteria_phage	3.9e-62	68.6
WP_047371471.1\|3285925_3286147_+	hypothetical protein	I6S5X8	Salmonella_phage	2.6e-28	82.9
WP_167337897.1\|3286197_3286365_+	hypothetical protein	NA	NA	NA	NA
WP_052958879.1\|3286383_3286737_-	hypothetical protein	A0A2D2W4Q6	Escherichia_phage	7.2e-12	38.9
WP_047371472.1\|3286807_3288628_-	hypothetical protein	A0A192Y934	Salmonella_phage	2.1e-155	53.3
WP_047371473.1\|3288627_3290109_-	phage DNA ejection protein	A0A2H4FND5	Salmonella_phage	3.3e-143	56.9
WP_047371474.1\|3290118_3290799_-	hypothetical protein	G5DA80	Enterobacteria_phage	4.6e-55	70.5
WP_047371475.1\|3290807_3291266_-	DUF2824 family protein	C6ZR15	Salmonella_phage	1.8e-71	81.2
WP_047371476.1\|3291273_3291963_-	hypothetical protein	Q76H17	Enterobacteria_phage	9.4e-40	69.9
WP_047371477.1\|3291962_3293381_-	Packaged DNA stabilization protein gp10	I1TEJ1	Salmonella_phage	7.2e-204	70.8
WP_047371478.1\|3293340_3293844_-	packaged DNA stabilization gp4 family protein	C6ZR12	Salmonella_phage	3.8e-75	84.9
WP_047371479.1\|3293827_3294100_-	hypothetical protein	A0A2D1GLK1	Escherichia_phage	4.2e-12	64.0
WP_047371480.1\|3294141_3295428_-\|coat	coat protein	A0A192Y6V4	Salmonella_phage	1.1e-206	83.2
WP_047371481.1\|3295427_3296336_-	scaffolding protein	A0A192Y6T4	Salmonella_phage	1.6e-119	75.6
WP_047371482.1\|3296349_3298527_-\|portal	portal protein	A0A2H4FNE2	Salmonella_phage	0.0e+00	87.6
WP_082137076.1\|3298526_3300083_-\|terminase	terminase large subunit	Q8HAE4	Salmonella_phage	1.3e-278	86.5
WP_047371484.1\|3300015_3300495_-	DNA-packaging protein	A0A192Y693	Salmonella_phage	5.1e-77	89.2
WP_047371485.1\|3300592_3301282_-	Rha family transcriptional regulator	Q5G8R0	Enterobacteria_phage	2.5e-93	75.1
WP_052958880.1\|3301564_3302107_-\|lysis	lysis protein	S4TTP1	Salmonella_phage	6.1e-26	44.8
WP_047371486.1\|3302103_3302343_-	hypothetical protein	NA	NA	NA	NA
WP_047371487.1\|3302339_3302972_-	glycoside hydrolase family 19 protein	F1C5D2	Cronobacter_phage	2.6e-84	72.1
WP_139153713.1\|3302980_3303298_-	hypothetical protein	NA	NA	NA	NA
WP_047371489.1\|3303284_3303578_-	hypothetical protein	NA	NA	NA	NA
WP_047371490.1\|3303771_3304260_-	DUF1133 family protein	H6WZJ5	Escherichia_phage	5.4e-74	82.1
WP_047371491.1\|3304256_3304436_-	hypothetical protein	NA	NA	NA	NA
WP_139153714.1\|3304432_3304612_-	hypothetical protein	A0A291AX71	Salmonella_phage	1.7e-09	62.5
WP_047371492.1\|3304608_3304866_-	hypothetical protein	G0ZNC5	Cronobacter_phage	1.0e-28	71.8
WP_047371493.1\|3304862_3305459_-	recombination protein NinG	A0A0P0ZG59	Escherichia_phage	6.9e-39	45.6
WP_071845911.1\|3305641_3305827_-	hypothetical protein	NA	NA	NA	NA
WP_047371494.1\|3305813_3306227_-	DUF2591 family protein	A0A088CQ65	Enterobacteria_phage	3.6e-31	51.9
WP_047371495.1\|3306219_3306399_-	NinE family protein	C6ZR57	Salmonella_phage	3.0e-06	48.3
WP_071845912.1\|3306365_3306539_-	protein ninD	C6ZR56	Salmonella_phage	1.9e-21	74.5
WP_047371496.1\|3306535_3307099_-	phage N-6-adenine-methyltransferase	E5AGF8	Erwinia_phage	2.8e-66	65.2
WP_047371497.1\|3307095_3307545_-	recombination protein NinB	A0A0P0ZEG6	Stx2-converting_phage	6.9e-68	83.1
WP_047371498.1\|3307501_3307711_-	restriction alleviation protein, Lar family	Q8HA09	Enterobacteria_phage	9.2e-07	47.8
WP_047371499.1\|3307742_3307943_-	hypothetical protein	NA	NA	NA	NA
WP_047371500.1\|3307939_3308182_-	hypothetical protein	Q716C9	Shigella_phage	2.5e-16	60.3
WP_047371502.1\|3308626_3309235_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_047371503.1\|3309231_3310080_-	ATP-binding protein	K7PLU3	Enterobacteria_phage	5.4e-106	68.0
WP_047371504.1\|3310082_3310916_-	replication protein	K7PGT1	Enterobacteria_phage	4.0e-61	60.1
WP_047371505.1\|3310953_3311250_-	hypothetical protein	A2SY75	Escherichia_phage	1.4e-32	76.5
WP_120773466.1\|3311447_3312568_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.5e-50	43.3
WP_052958881.1\|3312799_3313408_+	hypothetical protein	A0A1R3Y5S0	Salmonella_virus	5.6e-20	50.0
WP_047371506.1\|3313344_3313797_+	hypothetical protein	A0A240F4V4	Ochrobactrum_phage	2.9e-34	61.2
WP_047371507.1\|3313793_3314087_+	hypothetical protein	NA	NA	NA	NA
WP_052958888.1\|3314605_3315109_+	hypothetical protein	S5VZS4	Pseudomonas_phage	5.6e-26	53.5
WP_052958890.1\|3315105_3315555_+	hypothetical protein	R9W0X9	Serratia_phage	4.5e-19	41.6
WP_047371508.1\|3315551_3316169_+	DUF551 domain-containing protein	NA	NA	NA	NA
WP_047371509.1\|3316249_3316429_+	hypothetical protein	NA	NA	NA	NA
WP_047371510.1\|3316665_3317829_+\|integrase	site-specific integrase	B9UDL9	Salmonella_phage	1.5e-202	88.2
WP_047371511.1\|3318143_3319010_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	8.5e-30	34.7
3317840:3317889	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3593517 : 3663271

Burkholderia_virus(11.11%)

protease,tRNA,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047371721.1\|3593517_3594594_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_047371722.1\|3594557_3596318_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_047371723.1\|3596350_3597967_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_047371724.1\|3597959_3601286_-	type VI secretion protein VasK	NA	NA	NA	NA
WP_052958968.1\|3601297_3602347_-	hypothetical protein	NA	NA	NA	NA
WP_071845922.1\|3602432_3602693_-	PAAR domain-containing protein	Q8W6S2	Burkholderia_virus	6.7e-07	40.5
WP_047371726.1\|3603576_3604035_-	hypothetical protein	NA	NA	NA	NA
WP_047371727.1\|3604056_3605043_-	hypothetical protein	NA	NA	NA	NA
WP_047371728.1\|3605035_3607546_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	5.3e-16	21.9
WP_082137081.1\|3607542_3608151_-	AAA family ATPase	NA	NA	NA	NA
WP_085929673.1\|3608077_3609246_-\|transposase	IS3-like element ISEc52 family transposase	Q716C2	Shigella_phage	1.9e-178	96.1
WP_082137001.1\|3609509_3610664_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_039076799.1\|3612940_3613432_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_047371730.1\|3613437_3615138_-	OmpA family protein	NA	NA	NA	NA
WP_047371731.1\|3615149_3615815_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_047371732.1\|3615811_3617152_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_172399095.1\|3617171_3618710_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_047371734.1\|3618766_3619258_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_071845925.1\|3620071_3620812_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	6.5e-39	39.7
WP_047371736.1\|3620868_3621339_+	ribonuclease HI	J9Q745	Salmonella_phage	2.9e-53	60.5
WP_047371737.1\|3621329_3622046_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_047371738.1\|3622078_3622834_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_047371739.1\|3622905_3624273_+	murein transglycosylase D	Q37969	Lactococcus_phage	5.8e-09	32.1
WP_047371740.1\|3624320_3625091_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_071845926.1\|3625169_3625970_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_047371741.1\|3626202_3627087_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_047371742.1\|3627230_3627788_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_047371743.1\|3627771_3628815_+	HlyD family secretion protein	NA	NA	NA	NA
WP_047371744.1\|3628811_3630371_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_047371745.1\|3630394_3631678_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_047371746.1\|3637470_3638037_-	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_047371747.1\|3638225_3639257_+	methionine ABC transporter ATP-binding protein MetN	G9BWD6	Planktothrix_phage	1.2e-35	40.2
WP_047371748.1\|3639249_3639903_+	methionine ABC transporter permease MetI	NA	NA	NA	NA
WP_047371749.1\|3639946_3640762_+	methionine ABC transporter substrate-binding lipoprotein MetQ	NA	NA	NA	NA
WP_047371750.1\|3640869_3641274_+	Rcs stress response system protein RcsF	NA	NA	NA	NA
WP_047371751.1\|3641270_3641978_+\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_047371752.1\|3642090_3643809_+\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_047371753.1\|3643843_3644539_-	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA
WP_047371754.1\|3644574_3644997_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_047371755.1\|3644993_3645539_-	YaeQ family protein	NA	NA	NA	NA
WP_039078450.1\|3645732_3645933_+	YaeP family protein	NA	NA	NA	NA
WP_039078449.1\|3645919_3646180_+	Rho-binding antiterminator	NA	NA	NA	NA
WP_167337921.1\|3646209_3647502_-\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_047371757.1\|3647568_3647958_-	VOC family protein	NA	NA	NA	NA
WP_047371758.1\|3648014_3650153_-	lysine decarboxylase LdcC	NA	NA	NA	NA
WP_039078446.1\|3650259_3651219_-	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_047371759.1\|3651231_3654714_-	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	1.6e-207	36.7
WP_047371760.1\|3654739_3655336_-	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	1.6e-27	39.7
WP_047371761.1\|3655332_3656481_-	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_047371762.1\|3656480_3657269_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_004145858.1\|3657272_3657728_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_047371763.1\|3657832_3658858_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_039078473.1\|3658861_3659356_-	molecular chaperone Skp	NA	NA	NA	NA
WP_047371764.1\|3659475_3661890_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_047371765.1\|3661921_3663271_-\|protease	sigma E protease regulator RseP	NA	NA	NA	NA

DBSCAN-SWA_10

5498415 : 5526306

Shigella_phage(25.0%)

integrase,transposase

attL 5518312:5518329|attR 5526496:5526513

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_120785385.1\|5498415_5499563_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	5.6e-146	91.9
WP_047373145.1\|5500451_5501417_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_047373146.1\|5501450_5502365_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_047373147.1\|5502364_5503243_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_047373148.1\|5503257_5503884_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
WP_047373149.1\|5503885_5505307_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
WP_103281690.1\|5505438_5506677_-	MFS transporter	NA	NA	NA	NA
WP_071845976.1\|5506924_5507071_+\|transposase	transposase	NA	NA	NA	NA
WP_047369795.1\|5507154_5508123_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_047373152.1\|5508311_5508596_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_047373153.1\|5509784_5510684_+	WYL domain-containing protein	NA	NA	NA	NA
WP_047373154.1\|5510902_5513104_+	hypothetical protein	NA	NA	NA	NA
WP_047373155.1\|5513103_5514810_+	50S ribosome-binding GTPase	NA	NA	NA	NA
WP_082137110.1\|5515172_5515385_-	hypothetical protein	NA	NA	NA	NA
WP_082137111.1\|5515775_5516291_+	hypothetical protein	NA	NA	NA	NA
WP_082137138.1\|5516372_5516549_+	phospholipase	NA	NA	NA	NA
WP_047373156.1\|5516851_5518111_-\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	1.5e-80	39.3
5518312:5518329	attL	NA	NA	NA	NA
WP_047373157.1\|5518704_5518908_+	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	1.2e-08	46.3
WP_047373158.1\|5519054_5519315_-	plasmid replication protein	NA	NA	NA	NA
WP_047373159.1\|5519311_5520163_-	replication initiation protein	NA	NA	NA	NA
WP_047373160.1\|5521013_5521301_-	hypothetical protein	NA	NA	NA	NA
WP_047373161.1\|5521336_5521714_-	hypothetical protein	NA	NA	NA	NA
WP_052958941.1\|5522049_5523120_+	MobA/MobL family protein	NA	NA	NA	NA
WP_047373162.1\|5523382_5523691_-	hypothetical protein	NA	NA	NA	NA
WP_047373163.1\|5524041_5524590_-	hypothetical protein	NA	NA	NA	NA
WP_047373164.1\|5525031_5526306_-\|integrase	tyrosine-type recombinase/integrase	B7SYF8	Stenotrophomonas_phage	1.8e-76	39.5
5526496:5526513	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP011601

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

28843 : 64365

Macacine_betaherpesvirus(20.0%)

integrase,transposase,protease

attL 43549:43562|attR 66049:66062

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000219087.1\|28843_30082_-\|transposase	IS110 family transposase	A0A0U3ULR1	Bacillus_phage	2.5e-11	23.1
WP_000589001.1\|30503_31844_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_085949440.1\|32018_33388_-\|transposase	IS3-like element ISKpn8 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	9.4e-108	95.5
WP_000137794.1\|33720_34326_-	hypothetical protein	NA	NA	NA	NA
WP_000703842.1\|34542_34824_-	hypothetical protein	NA	NA	NA	NA
WP_000802040.1\|34969_35146_-	hypothetical protein	NA	NA	NA	NA
WP_000633161.1\|35199_35511_-	hypothetical protein	NA	NA	NA	NA
WP_000814953.1\|35733_35934_-	hypothetical protein	NA	NA	NA	NA
WP_000551490.1\|35973_36198_-	hypothetical protein	NA	NA	NA	NA
WP_000781547.1\|36252_36456_-	hypothetical protein	NA	NA	NA	NA
WP_001371932.1\|37008_37500_-	DUF3085 domain-containing protein	NA	NA	NA	NA
WP_001165367.1\|37504_37816_-	DUF957 domain-containing protein	NA	NA	NA	NA
WP_000071366.1\|38332_38653_-	hypothetical protein	NA	NA	NA	NA
WP_001371935.1\|38831_39062_-	hypothetical protein	NA	NA	NA	NA
WP_000252081.1\|39233_40127_-	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|40436_41141_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001053340.1\|41250_42492_-	VWA domain-containing protein	NA	NA	NA	NA
WP_000301247.1\|42920_43496_-	TerD family protein	K4JRX3	Caulobacter_phage	8.7e-31	41.6
43549:43562	attL	NA	NA	NA	NA
WP_000116680.1\|43564_44143_-	tellurium resistance membrane protein TerD	A0A2P1N0L4	Streptomyces_phage	2.5e-06	40.0
WP_000255079.1\|44191_45232_-	tellurium resistance membrane protein TerC	K7QKE8	Escherichia_phage	2.2e-77	48.0
WP_000007449.1\|45254_45710_-	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_001054786.1\|45732_46890_-	TerD family protein	NA	NA	NA	NA
WP_000254137.1\|46889_47471_-	tellurium resistance-associated protein TerZ	K4JRX3	Caulobacter_phage	6.3e-13	30.0
WP_012695441.1\|47791_48850_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_001280115.1\|48859_50002_+	phosphoribosyltransferase	A0A172Q0Y1	Acinetobacter_phage	6.5e-30	34.5
WP_001040058.1\|49994_50768_+	hypothetical protein	NA	NA	NA	NA
WP_001585166.1\|50769_51849_+\|protease	cysteine protease StiP family protein	A0A172Q0S8	Acinetobacter_phage	2.8e-38	34.1
WP_011152965.1\|51848_52805_+	HpcH/HpaI aldolase/citrate lyase family protein	NA	NA	NA	NA
WP_011152964.1\|52815_54024_+	DUF4236 domain-containing protein	NA	NA	NA	NA
WP_001176767.1\|54041_54509_+	tellurium resistance protein TerW	NA	NA	NA	NA
WP_001253657.1\|54971_55610_+	VWA domain-containing protein	NA	NA	NA	NA
WP_000116681.1\|55632_56274_+	TerD family protein	NA	NA	NA	NA
WP_001253658.1\|56273_56912_+	VWA domain-containing protein	NA	NA	NA	NA
WP_001253656.1\|56996_58037_+	VWA domain-containing protein	NA	NA	NA	NA
WP_000081059.1\|58036_59674_+	protein phosphatase 2C domain-containing protein	NA	NA	NA	NA
WP_001284318.1\|59699_61199_+	kinase	NA	NA	NA	NA
WP_001232447.1\|61364_62447_-	hypothetical protein	NA	NA	NA	NA
WP_001285422.1\|62807_63020_-	hypothetical protein	NA	NA	NA	NA
WP_000795949.1\|63189_64365_+\|integrase	tyrosine-type recombinase/integrase	I3WEY3	Macacine_betaherpesvirus	2.9e-17	27.4
66049:66062	attR	NA	NA	NA	NA

DBSCAN-SWA_2

159469 : 237263

Escherichia_phage(29.63%)

integrase,transposase,protease

attL 166175:166234|attR 234026:235341

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072223036.1\|159469_160438_+\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	1.8e-185	99.1
WP_000140246.1\|160554_160884_+	hypothetical protein	NA	NA	NA	NA
WP_001180999.1\|162699_162939_+	hypothetical protein	NA	NA	NA	NA
WP_000172888.1\|163001_163313_+	hypothetical protein	NA	NA	NA	NA
WP_000159617.1\|163309_163504_+	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|164019_164724_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001011939.1\|164867_165509_-	type A-2 chloramphenicol O-acetyltransferase CatII	G3CFL0	Escherichia_phage	7.3e-55	45.9
WP_001239317.1\|165658_166159_-	hypothetical protein	NA	NA	NA	NA
166175:166234	attL	NA	NA	NA	NA
WP_001067855.1\|166238_166943_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
166175:166234	attL	NA	NA	NA	NA
WP_001044210.1\|166948_167089_+	hypothetical protein	NA	NA	NA	NA
WP_000845039.1\|167735_168749_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_012695484.1\|168911_169493_+	aminoglycoside N-acetyltransferase AAC(6')-IIc	NA	NA	NA	NA
WP_006473457.1\|169980_171336_+\|transposase	IS1380-like element IS1247 family transposase	A0A1X9I6F6	Streptococcus_phage	2.2e-45	29.7
WP_012695485.1\|171577_172387_+	aminoglycoside N-acetyltransferase AAC(3)-IIg	O64018	Bacillus_phage	1.2e-17	29.3
WP_012695486.1\|172514_172928_+	NAD(+)--rifampin ADP-ribosyltransferase	NA	NA	NA	NA
WP_012695487.1\|173290_173722_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_000679427.1\|175031_175379_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|175372_176212_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000376623.1\|176339_176840_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001067855.1\|176915_177620_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001138070.1\|177740_180707_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	72.9
176852:177672	attR	NA	NA	NA	NA
WP_000427619.1\|180785_181790_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
176852:177672	attR	NA	NA	NA	NA
WP_000954592.1\|181971_182148_-	DUF4102 domain-containing protein	T1S9J3	Salmonella_phage	1.0e-06	68.6
WP_001043260.1\|182477_183293_+	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
WP_001445143.1\|183575_183827_-	hypothetical protein	NA	NA	NA	NA
WP_001120888.1\|183857_185351_-\|transposase	IS91-like element ISVsa3 family transposase	NA	NA	NA	NA
WP_000743213.1\|185561_185786_-	hypothetical protein	NA	NA	NA	NA
WP_001446887.1\|185782_186520_-	recombinase family protein	NA	NA	NA	NA
WP_001044210.1\|187005_187146_-	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|187151_187856_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000374058.1\|187960_188416_+	hypothetical protein	NA	NA	NA	NA
WP_000398479.1\|188656_188848_-	hypothetical protein	NA	NA	NA	NA
WP_001151572.1\|188939_189281_-	hypothetical protein	NA	NA	NA	NA
WP_000880375.1\|190267_190522_+	hypothetical protein	NA	NA	NA	NA
WP_000166877.1\|190524_192564_-	ATP-dependent helicase	E3T5J8	Cafeteria_roenbergensis_virus	1.7e-25	25.3
WP_000211823.1\|192560_193547_-	hypothetical protein	NA	NA	NA	NA
WP_000341066.1\|194467_194860_+	hypothetical protein	NA	NA	NA	NA
WP_000462754.1\|195518_196175_+\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_000340139.1\|196377_196875_+	membrane protein	NA	NA	NA	NA
WP_012695445.1\|196879_198268_+	hypothetical protein	NA	NA	NA	NA
WP_012477377.1\|198668_198962_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000134171.1\|200341_200548_+	hypothetical protein	NA	NA	NA	NA
WP_000985909.1\|200648_201059_+	hypothetical protein	NA	NA	NA	NA
WP_000427623.1\|201777_202782_-\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
WP_000405672.1\|202872_203307_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_012695446.1\|203392_205798_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	6.6e-141	46.0
WP_000118563.1\|205794_206871_+	lipoprotein signal peptidase	NA	NA	NA	NA
WP_000993245.1\|206879_207092_-	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_001087807.1\|207157_207394_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001277466.1\|207390_207756_-	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_000209296.1\|207773_209459_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.8e-39	29.1
WP_000522996.1\|209497_209923_-	organomercurial transporter MerC	NA	NA	NA	NA
WP_000732275.1\|209950_210226_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_001294656.1\|210241_210607_-	mercuric ion transporter MerT	NA	NA	NA	NA
WP_001166628.1\|210678_211134_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_000278471.1\|211811_212237_+	hypothetical protein	NA	NA	NA	NA
WP_001224686.1\|212785_213094_+	hypothetical protein	NA	NA	NA	NA
WP_000784387.1\|213109_213967_+	HNH endonuclease	G0X580	Salmonella_phage	3.9e-11	34.2
WP_001287391.1\|214573_214978_-	H-NS histone family protein	NA	NA	NA	NA
WP_001100635.1\|215155_215449_-	hypothetical protein	NA	NA	NA	NA
WP_000175475.1\|215474_215711_-	hypothetical protein	NA	NA	NA	NA
WP_013815099.1\|215961_216930_+\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	1.0e-185	99.1
WP_000490638.1\|217331_217997_-	hypothetical protein	NA	NA	NA	NA
WP_001371925.1\|218054_218435_-	hypothetical protein	NA	NA	NA	NA
WP_000027057.1\|218764_219625_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001235713.1\|219807_220365_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
WP_001143760.1\|220528_223534_+\|transposase	Tn3-like element Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	100.0
WP_001067855.1\|227547_228252_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001239317.1\|228331_228832_+	hypothetical protein	NA	NA	NA	NA
WP_001011939.1\|228981_229623_+	type A-2 chloramphenicol O-acetyltransferase CatII	G3CFL0	Escherichia_phage	7.3e-55	45.9
WP_001067855.1\|229766_230471_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_011191340.1\|230729_230978_+	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
WP_001173919.1\|231104_231680_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	5.6e-46	52.7
WP_000845039.1\|232022_233036_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001261740.1\|233181_233973_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_000679427.1\|234136_234484_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|234477_235317_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000050481.1\|235721_237263_+\|transposase	IS91 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

261975 : 269868

uncultured_Caudovirales_phage(85.71%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000927306.1\|261975_263454_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	7.3e-199	74.4
WP_001066652.1\|263472_264300_+	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	4.9e-43	37.2
WP_000065802.1\|264359_264785_-	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	1.6e-50	70.7
WP_000922628.1\|264797_266087_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	9.9e-168	71.4
WP_000941305.1\|266132_266453_-	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	1.7e-20	53.7
WP_000130816.1\|266539_267244_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	8.8e-86	72.9
WP_000125668.1\|267276_268680_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_022652343.1\|268899_269868_-\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	3.7e-183	98.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP011600

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

84563 : 141180

uncultured_Caudovirales_phage(19.23%)

integrase,transposase

attL 80399:80414|attR 145541:145556

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
80399:80414	attL	NA	NA	NA	NA
WP_047368834.1\|84563_84992_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	4.6e-29	52.4
WP_047368835.1\|84991_86266_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	1.9e-150	63.3
WP_047368836.1\|86486_87452_-	ParB/RepB/Spo0J family partition protein	A0A1B0V750	Salmonella_phage	6.9e-81	51.1
WP_047368888.1\|87451_88657_-	AAA family ATPase	A0A077SL49	Escherichia_phage	4.5e-162	68.1
WP_047368837.1\|89507_90218_+	replication initiation protein	I3WF20	Macacine_betaherpesvirus	3.9e-25	31.8
WP_085949497.1\|90576_91723_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.3e-147	92.6
WP_047368839.1\|91720_92851_-	hypothetical protein	NA	NA	NA	NA
WP_047368840.1\|92869_93658_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	7.4e-49	84.3
WP_047368841.1\|93682_94192_-	hypothetical protein	NA	NA	NA	NA
WP_047368889.1\|94229_94598_-	hypothetical protein	NA	NA	NA	NA
WP_052958800.1\|94664_95156_-	hypothetical protein	NA	NA	NA	NA
WP_047368842.1\|95292_95598_-	hypothetical protein	NA	NA	NA	NA
WP_125125746.1\|95655_96024_-	hypothetical protein	NA	NA	NA	NA
WP_007374408.1\|96891_97800_+	HNH endonuclease	NA	NA	NA	NA
WP_032716639.1\|98207_98558_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	6.7e-18	52.4
WP_047368844.1\|98703_99135_-	silver-binding protein SilE	NA	NA	NA	NA
WP_007374412.1\|99385_100861_-	copper/silver sensor histidine kinase SilS	W8CYF6	Bacillus_phage	1.0e-27	30.1
WP_007374413.1\|100853_101534_-	copper/silver response regulator transcription factor SilR	W8CYM9	Bacillus_phage	2.7e-31	36.0
WP_047368845.1\|101723_103109_+	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	NA	NA	NA	NA
WP_007374415.1\|103138_103492_+	cation efflux system protein CusF	NA	NA	NA	NA
WP_047368846.1\|103605_104898_+	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	NA	NA	NA	NA
WP_047368847.1\|104908_108055_+	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	S5VTK5	Leptospira_phage	6.8e-61	22.2
WP_002436620.1\|108141_108582_+	hypothetical protein	NA	NA	NA	NA
WP_139153684.1\|108679_111151_+	Ag(+)-translocating P-type ATPase SilP	A0A218MNH6	uncultured_virus	8.5e-83	34.9
WP_000287502.1\|111427_112165_-	peptidoglycan DD-metalloendopeptidase family protein	A0A2H4JAF5	uncultured_Caudovirales_phage	1.3e-10	31.9
WP_000839182.1\|112822_113227_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	1.6e-68	97.8
WP_000612626.1\|113223_113571_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_008786790.1\|113619_115158_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.7e-278	93.8
WP_000925242.1\|115599_117417_+	multicopper oxidase PcoA	NA	NA	NA	NA
WP_171861965.1\|117422_118313_+	copper resistance outer membrane transporter PcoB	NA	NA	NA	NA
WP_000025662.1\|118352_118733_+	copper resistance system metallochaperone PcoC	NA	NA	NA	NA
WP_000998778.1\|118737_119667_+	copper resistance inner membrane protein PcoD	NA	NA	NA	NA
WP_001188930.1\|119721_120402_+	copper response regulator transcription factor PcoR	W8CYM9	Bacillus_phage	8.7e-30	34.4
WP_007374420.1\|120398_121799_+	copper resistance membrane spanning protein PcoS	W8CYF6	Bacillus_phage	4.1e-18	26.6
WP_007374421.1\|122016_122451_+	hypothetical protein	NA	NA	NA	NA
WP_047368850.1\|122680_122977_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_007374405.1\|122963_123224_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_047368851.1\|123568_123799_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_047368852.1\|123795_124212_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_047368853.1\|124398_125628_-	HDOD domain-containing protein	NA	NA	NA	NA
WP_047368854.1\|127194_127437_-	hypothetical protein	NA	NA	NA	NA
WP_052958801.1\|128749_129718_+	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	6.2e-13	32.1
WP_000427614.1\|130154_131159_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_047368856.1\|131333_131759_-	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	1.9e-51	72.1
WP_047368891.1\|131771_133061_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	1.2e-168	71.6
WP_047368857.1\|133105_133426_-	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	6.5e-20	44.8
WP_016151343.1\|133511_134210_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	4.5e-90	69.4
WP_000427614.1\|134604_135609_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_032743892.1\|135699_136140_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_004213585.1\|136225_138631_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.0e-141	46.1
WP_000118563.1\|138627_139704_+	lipoprotein signal peptidase	NA	NA	NA	NA
WP_001162010.1\|139833_140391_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	3.4e-48	81.3
WP_001067855.1\|140475_141180_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
145541:145556	attR	NA	NA	NA	NA

DBSCAN-SWA_2

152575 : 200789

Escherichia_phage(22.22%)

integrase,transposase

attL 152311:152370|attR 199520:200860

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
152311:152370	attL	NA	NA	NA	NA
WP_000427614.1\|152575_153580_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_003100847.1\|153658_154216_-	recombinase family protein	A0A0C4UR34	Shigella_phage	3.3e-59	63.2
WP_003100853.1\|154209_154581_-	hypothetical protein	NA	NA	NA	NA
WP_003100856.1\|154577_155078_-	hypothetical protein	NA	NA	NA	NA
WP_003100858.1\|155074_155401_-	hypothetical protein	NA	NA	NA	NA
WP_000215515.1\|155655_156012_-	cupin domain-containing protein	NA	NA	NA	NA
WP_001293886.1\|156001_156403_-	DUF86 domain-containing protein	NA	NA	NA	NA
WP_001247892.1\|156399_156690_-	nucleotidyltransferase	NA	NA	NA	NA
WP_000427614.1\|157138_158143_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_000429838.1\|158242_158677_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_001294667.1\|158748_159099_+	mercuric ion transporter MerT	NA	NA	NA	NA
WP_000735441.1\|159114_159390_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_000654684.1\|159392_159638_+	mercury resistance system transport protein MerF	NA	NA	NA	NA
WP_000136268.1\|159634_161281_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.0e-39	28.3
WP_003465059.1\|161297_161663_+	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_001087809.1\|161659_161896_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_000427614.1\|162338_163343_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_024945956.1\|163421_166391_-\|transposase	Tn3-like element TnShfr1 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.1
WP_025714488.1\|166601_166898_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_011638900.1\|166905_167472_+	recombinase family protein	A0A0C4UR34	Shigella_phage	2.2e-58	64.6
WP_023294863.1\|167491_168451_+	cation transporter	A0A1V0SED0	Indivirus	4.5e-08	25.3
WP_000427614.1\|168571_169576_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_047368866.1\|171614_172031_+	hypothetical protein	NA	NA	NA	NA
WP_000493286.1\|172894_173224_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	2.4e-09	44.2
WP_000780222.1\|173204_173486_+	helix-turn-helix transcriptional regulator	A0A2I6TC97	Escherichia_phage	1.3e-08	38.0
WP_001067858.1\|173915_174620_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_071845817.1\|174666_174843_-	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_047368867.1\|174883_177331_-	Ag(+)-translocating P-type ATPase SilP	A0A218MNH6	uncultured_virus	8.4e-83	35.4
WP_009654300.1\|177457_177898_-	hypothetical protein	NA	NA	NA	NA
WP_009654305.1\|177984_181131_-	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	S5VTK5	Leptospira_phage	8.0e-62	22.6
WP_000019441.1\|182159_183140_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	2.3e-185	99.1
WP_063923542.1\|185641_185908_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_001515717.1\|186556_187297_+\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
WP_047368870.1\|187994_189005_-	replication initiation protein	J9Q7H0	Salmonella_phage	2.3e-87	54.3
WP_000523812.1\|189755_190922_+	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	3.0e-224	97.7
WP_004206785.1\|190921_191893_+	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	1.0e-148	86.3
WP_047368871.1\|193218_193524_-	hypothetical protein	NA	NA	NA	NA
WP_047368872.1\|193577_193829_-	plasmid stabilization protein	NA	NA	NA	NA
WP_004206782.1\|193907_195179_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	8.6e-156	64.0
WP_009309980.1\|195178_195604_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	2.9e-31	50.4
WP_001067858.1\|197018_197723_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_047368874.1\|197878_199138_+	glycerate kinase	NA	NA	NA	NA
WP_000427614.1\|199784_200789_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
199520:200860	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP011599

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

35773 : 60704

Salmonella_phage(40.0%)

transposase,integrase

attL 34421:34435|attR 53600:53614

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
34421:34435	attL	NA	NA	NA	NA
WP_000845048.1\|35773_36787_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_000381802.1\|36935_37469_+	aminoglycoside nucleotidyltransferase ANT(2'')-Ia	NA	NA	NA	NA
WP_001007673.1\|37538_38366_+	oxacillin-hydrolyzing class D beta-lactamase OXA-2	NA	NA	NA	NA
WP_000679427.1\|38501_38849_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|38842_39682_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000376623.1\|39809_40310_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001389365.1\|40816_41581_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_032622530.1\|41876_42182_+	hypothetical protein	NA	NA	NA	NA
WP_060613126.1\|42165_42525_+	hypothetical protein	NA	NA	NA	NA
WP_032622536.1\|42823_43468_+	recombinase family protein	NA	NA	NA	NA
WP_000427614.1\|44583_45588_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_032622532.1\|45666_48633_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	72.8
WP_003124096.1\|48635_49196_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	2.1e-50	88.6
WP_000993245.1\|49326_49539_-	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_001087807.1\|49604_49841_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001277466.1\|49837_50203_-	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_000209296.1\|50220_51906_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.8e-39	29.1
WP_000522996.1\|51944_52370_-	organomercurial transporter MerC	NA	NA	NA	NA
WP_000732275.1\|52397_52673_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_001294656.1\|52688_53054_-	mercuric ion transporter MerT	NA	NA	NA	NA
WP_001166628.1\|53125_53581_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_000654805.1\|54967_55936_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	7.7e-181	96.9
53600:53614	attR	NA	NA	NA	NA
WP_032491180.1\|56056_56917_+	class A extended-spectrum beta-lactamase SHV-30	A0A077SL40	Escherichia_phage	1.7e-155	99.3
WP_002210513.1\|56937_57699_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_004206881.1\|57806_60704_-\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	2.5e-182	37.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011602

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP011601

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP011600

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP011599

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection