CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP011653	Citrobacter freundii strain CAV1741 plasmid pCAV1741-16, complete sequence	0 crisprs	NA	0	0
NZ_CP011655	Citrobacter freundii strain CAV1741 plasmid pCAV1741-110, complete sequence	0 crisprs	DEDDh	0	2
NZ_CP011651	Citrobacter freundii strain CAV1741 plasmid pCAV1741-1916, complete sequence	0 crisprs	NA	0	0
NZ_CP011654	Citrobacter freundii strain CAV1741 plasmid pCAV1741-101, complete sequence	0 crisprs	NA	0	1
NZ_CP011652	Citrobacter freundii strain CAV1741 plasmid pCAV1741-3223, complete sequence	0 crisprs	NA	0	0
NZ_CP011657	Citrobacter freundii strain CAV1741, complete genome	2 crisprs	DEDDh,cas3,DinG,csa3,WYL,PD-DExK	1	10
NZ_CP011656	Citrobacter freundii strain CAV1741 plasmid pKPC_CAV1741, complete sequence	0 crisprs	NA	0	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

220 : 25531

Macacine_betaherpesvirus(25.0%)

integrase,transposase

attL 4818:4833|attR 27316:27331

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001572362.1\|220_1243_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_022652310.1\|2318_3059_+\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
WP_022652311.1\|3384_4374_-	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	5.0e-103	61.2
4818:4833	attL	NA	NA	NA	NA
WP_022652312.1\|5229_5499_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_022652313.1\|5502_6033_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_086538014.1\|6164_7058_+\|transposase	IS5 family transposase	Q38213	Escherichia_phage	6.7e-155	87.1
WP_022652315.1\|8159_9311_+\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	9.8e-42	35.3
WP_001201739.1\|9419_9803_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	4.1e-13	36.3
WP_000609174.1\|9799_10147_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.7e-59	95.7
WP_032430836.1\|10196_11732_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	6.5e-259	87.5
WP_047715661.1\|11788_13147_-\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	1.7e-117	47.5
WP_022652317.1\|13972_15139_+	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	1.1e-218	94.3
WP_022652318.1\|15138_16104_+	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	8.8e-137	77.5
WP_022652236.1\|18132_20271_+	hypothetical protein	NA	NA	NA	NA
WP_022652237.1\|20574_22008_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	7.0e-106	50.6
WP_022652238.1\|22041_23256_-	type II site-specific deoxyribonuclease	E5E3X4	Burkholderia_phage	9.4e-35	42.9
WP_022652239.1\|23404_25531_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
27316:27331	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP011656

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4707 : 61879

Escherichia_phage(26.32%)

transposase,integrase

attL 28617:28632|attR 69172:69187

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032420248.1\|4707_5475_-\|integrase	tyrosine-type recombinase/integrase	I3WFA4	Macacine_betaherpesvirus	2.0e-14	42.7
WP_002353184.1\|6088_6478_+	hypothetical protein	NA	NA	NA	NA
WP_002353195.1\|6728_6920_-	ribbon-helix-helix domain-containing protein	A0A0A7RUX5	Clostridium_phage	7.8e-05	55.6
WP_002353175.1\|7081_7405_-	ccdB family protein	NA	NA	NA	NA
WP_002353172.1\|7404_7653_-	post-segregation antitoxin CcdA family protein	NA	NA	NA	NA
WP_032420243.1\|7750_8215_-	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	9.5e-20	41.5
WP_002353166.1\|8614_8983_+	hypothetical protein	NA	NA	NA	NA
WP_032420263.1\|9218_9584_+	antirestriction protein	A9J566	Pseudomonas_phage	3.7e-11	31.7
WP_032420262.1\|9615_10152_-	hypothetical protein	NA	NA	NA	NA
WP_032420241.1\|10189_10648_-	hypothetical protein	NA	NA	NA	NA
WP_020316842.1\|10644_11472_-	chromosome partitioning protein ParB	NA	NA	NA	NA
WP_020316825.1\|11474_13460_-	hypothetical protein	NA	NA	NA	NA
WP_020316827.1\|14537_15251_+	hypothetical protein	NA	NA	NA	NA
WP_020316829.1\|15265_16288_+	CpaF family protein	NA	NA	NA	NA
WP_002353183.1\|16986_17262_+	hypothetical protein	NA	NA	NA	NA
WP_002353162.1\|17268_17628_+	hypothetical protein	NA	NA	NA	NA
WP_032420234.1\|17640_20220_+	ATPase AAA	NA	NA	NA	NA
WP_020316841.1\|20216_21029_+	hypothetical protein	NA	NA	NA	NA
WP_032420232.1\|21028_21487_+	hypothetical protein	NA	NA	NA	NA
WP_020316822.1\|21533_22508_+	conjugal transfer protein TrbL	NA	NA	NA	NA
WP_020316826.1\|22518_23244_+	VirB8 protein	NA	NA	NA	NA
WP_032420230.1\|23248_24082_+	conjugal transfer protein	NA	NA	NA	NA
WP_020316837.1\|24084_25461_+	TrbI/VirB10 family protein	NA	NA	NA	NA
WP_002353202.1\|25441_25978_+	hypothetical protein	NA	NA	NA	NA
WP_002396882.1\|25983_26175_+	lipoprotein	NA	NA	NA	NA
WP_032420226.1\|26171_26858_+	lytic transglycosylase domain-containing protein	A0A1P8CWQ1	Bacillus_phage	4.6e-23	53.1
WP_043053774.1\|26858_27209_+	trbM family protein	NA	NA	NA	NA
28617:28632	attL	NA	NA	NA	NA
WP_004152397.1\|29962_31282_+\|transposase	IS1182-like element ISKpn6 family transposase	Q9MBP7	Staphylococcus_prophage	1.9e-12	24.2
WP_004199234.1\|31531_32413_-	carbapenem-hydrolyzing class A beta-lactamase KPC-2	A0A1B0VBP7	Salmonella_phage	2.2e-73	52.2
WP_004152394.1\|32799_33579_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.5e-89	61.8
WP_004199214.1\|33575_34601_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-87	50.3
WP_004152392.1\|34707_37737_-\|transposase	IS3-like element Tn4401 family transposase	NA	NA	NA	NA
WP_004152391.1\|37846_39562_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_001217881.1\|40675_41233_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	2.0e-93	98.4
WP_000027057.1\|41415_42276_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_004206935.1\|44067_44721_+	hypothetical protein	NA	NA	NA	NA
WP_004187496.1\|44794_45025_+	hypothetical protein	NA	NA	NA	NA
WP_020316718.1\|45309_46377_+	RepA protein, IncFII family	NA	NA	NA	NA
WP_000845048.1\|48624_49638_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_047715654.1\|49723_50356_+	AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase	NA	NA	NA	NA
WP_047715652.1\|50425_51217_+	AadA family aminoglycoside 3''-O-nucleotidyltransferase	NA	NA	NA	NA
WP_000679427.1\|51380_51728_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|51721_52561_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000050481.1\|52965_54507_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_032491313.1\|54862_55342_+	trimethoprim-resistant dihydrofolate reductase DfrA3b	A0A0N9RSY5	Escherichia_phage	1.8e-10	30.7
WP_023279823.1\|55442_56366_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	9.6e-173	97.4
WP_032491180.1\|56531_57392_+	class A extended-spectrum beta-lactamase SHV-30	A0A077SL40	Escherichia_phage	1.7e-155	99.3
WP_002210513.1\|57412_58174_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_004206881.1\|58281_61179_-\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	2.5e-182	37.8
WP_000509966.1\|61273_61879_+	DNA resolvase	A0A1S5Y2X8	uncultured_archaeal_virus	5.5e-20	35.3
69172:69187	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP011657

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011657_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011657_1

141426-141549

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of NZ_CP011657_1

>merge|NZ_CP011657|1|141426-141549|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAAGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP011657|1|1|141426-141549|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAAGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011657.1\|WP_003029271.1\|144587_145229_-\|DUF1120-domain-containing-protein	unknown	unknown	gnl\|CDD\|185203
NZ_CP011657.1\|WP_016150174.1\|142445_143456_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NZ_CP011657.1\|WP_044699940.1\|131551_133444_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|379192
NZ_CP011657.1\|WP_044699935.1\|140506_141229_-\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270259
NZ_CP011657.1\|WP_003836487.1\|151464_152154_+\|YafY-family-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NZ_CP011657.1\|WP_032935879.1\|129550_130978_+\|gamma-aminobutyraldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143411
NZ_CP011657.1\|WP_003836489.1\|150192_150498_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP011657.1\|WP_044699937.1\|134699_136175_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP011657.1\|WP_047715825.1\|145374_145926_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|185201
NZ_CP011657.1\|WP_003029264.1\|148458_149163_-\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|236632
NZ_CP011657.1\|WP_016150178.1\|149262_149967_-\|DUF1120-domain-containing-protein	unknown	unknown	gnl\|CDD\|185203
NZ_CP011657.1\|WP_003029273.1\|143534_144515_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|227311
NZ_CP011657.1\|WP_003029283.1\|138766_139771_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP011657.1\|WP_003843506.1\|130989_131463_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377824
NZ_CP011657.1\|WP_044699931.1\|145922_148337_-\|fimbrial-biogenesis-usher-protein	unknown	unknown	gnl\|CDD\|237937
NZ_CP011657.1\|WP_003836510.1\|139767_140520_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP011657.1\|WP_032935874.1\|136281_137544_+\|4-aminobutyrate-transaminase	unknown	unknown	gnl\|CDD\|182078
NZ_CP011657.1\|WP_032935872.1\|137724_138780_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238562
NZ_CP011657.1\|WP_003029256.1\|152224_152971_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235546
NZ_CP011657.1\|WP_044699939.1\|133447_134656_+\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|379187

Protein	Function_ID	Function_description	E-value
NZ_CP011657.1\|WP_003029271.1\|144587_145229_-\|DUF1120-domain-containing-protein	gnl\|CDD\|185203	PRK15303, PRK15303, hypothetical protein; Provisional.	1.77492e-20
NZ_CP011657.1\|WP_016150174.1\|142445_143456_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	7.49337e-175
NZ_CP011657.1\|WP_044699940.1\|131551_133444_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|379192	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.	6.23702e-06
NZ_CP011657.1\|WP_044699935.1\|140506_141229_-\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270259	cd13541, PBP2_ModA_like_2, Substrate binding domain of molybdate-binding proteins;the type 2 periplasmic binding protein fold. This subfamily contains domains found in ModA proteins of putative ABC-type transporter. ModA proteins serve as initial receptors in the ABC transport of molybdate in eubacteria and archaea. Bacteria and archaea import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). After binding molybdate and tungstate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.00628e-89
NZ_CP011657.1\|WP_003836487.1\|151464_152154_+\|YafY-family-transcriptional-regulator	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	7.36654e-56
NZ_CP011657.1\|WP_032935879.1\|129550_130978_+\|gamma-aminobutyraldehyde-dehydrogenase	gnl\|CDD\|143411	cd07092, ALDH_ABALDH-YdcW, Escherichia coli NAD+-dependent gamma-aminobutyraldehyde dehydrogenase YdcW-like. NAD+-dependent, tetrameric, gamma-aminobutyraldehyde dehydrogenase (ABALDH), YdcW of Escherichia coli K12, catalyzes the oxidation of gamma-aminobutyraldehyde to gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl medium-chain aldehydes, but with a lower catalytic efficiency.	0
NZ_CP011657.1\|WP_003836489.1\|150192_150498_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.10982e-10
NZ_CP011657.1\|WP_044699937.1\|134699_136175_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	6.22192e-138
NZ_CP011657.1\|WP_047715825.1\|145374_145926_-\|hypothetical-protein	gnl\|CDD\|185201	PRK15301, PRK15301, hypothetical protein; Provisional.	4.68137e-09
NZ_CP011657.1\|WP_003029264.1\|148458_149163_-\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|236632	PRK09918, PRK09918, putative fimbrial chaperone protein; Provisional.	3.53319e-98
NZ_CP011657.1\|WP_016150178.1\|149262_149967_-\|DUF1120-domain-containing-protein	gnl\|CDD\|185203	PRK15303, PRK15303, hypothetical protein; Provisional.	1.18285e-30
NZ_CP011657.1\|WP_003029273.1\|143534_144515_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	2.93083e-79
NZ_CP011657.1\|WP_003029283.1\|138766_139771_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	3.09202e-82
NZ_CP011657.1\|WP_003843506.1\|130989_131463_+\|hypothetical-protein	gnl\|CDD\|377824	pfam07366, SnoaL, SnoaL-like polyketide cyclase. This family includes SnoaL a polyketide cyclase involved in nogalamycin biosynthesis. This family was formerly known as DUF1486. The proteins in this family adopt a distorted alpha-beta barrel fold. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalyzing intramolecular aldol condensation.	6.33366e-20
NZ_CP011657.1\|WP_044699931.1\|145922_148337_-\|fimbrial-biogenesis-usher-protein	gnl\|CDD\|237937	PRK15304, PRK15304, putative fimbrial outer membrane usher protein; Provisional.	0
NZ_CP011657.1\|WP_003836510.1\|139767_140520_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	4.26889e-80
NZ_CP011657.1\|WP_032935874.1\|136281_137544_+\|4-aminobutyrate-transaminase	gnl\|CDD\|182078	PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional.	0
NZ_CP011657.1\|WP_032935872.1\|137724_138780_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238562	cd01142, TroA_e, Periplasmic binding protein TroA_e. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	4.7154e-82
NZ_CP011657.1\|WP_003029256.1\|152224_152971_+\|SDR-family-oxidoreductase	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	7.89913e-89
NZ_CP011657.1\|WP_044699939.1\|133447_134656_+\|c-type-cytochrome	gnl\|CDD\|379187	pfam13442, Cytochrome_CBB3, Cytochrome C oxidase, cbb3-type, subunit III.	3.52941e-10

>NZ_CP011657.1|WP_044699935.1|140506_141229_-|molybdate-ABC-transporter-substrate-binding-protein
MPSSILLFAAGSLRPAFTPLISQFTRMSGIDVKIEYGPAGLLRERIETGEPCALFASANREHPQNLLVRNKAVSTHTFCWNKLSLVSNRIGTWLDLLRDPTLRPGTSTPGCDPSGDYTWAFFDNMDVLEPGLGQQLRARAIPLVGGRDTIKIPQGELASAWILRQGLADLFIGYAHYAHALHAMTDVHYVAIPDEHNICCEYQLAVLDASKEVMALVEFILSRSGQAFLTAAGFLPLNAE
>NZ_CP011657.1|WP_003836510.1|139767_140520_+|ABC-transporter-ATP-binding-protein
MIPAALRVNQLSYGYRAPLFEPLTFCCQKGDIWAVLGRNGLGKSTLLDTLTGTLPALGGSIENNGGIGIVAQHSHLPFPYTVSDVVLMGRAQHVKLFAQPSQQDQQRAMQALEQLSIAHLASSSFGSLSGGQQQLVMIARALVTECQTLLLDEPCSALDLANQQVVLQLISDLAHQQGCSILFSTHDPLHALQVASHTLLLLPEGKWRAGPTDSIVTEENLFLAYGLPLRKLSVENHPTPFIAPLFSIRR
>NZ_CP011657.1|WP_003029283.1|138766_139771_+|iron-ABC-transporter-permease
MQLSNRFLPQQPLLIVVVLLLGVSSLCLGQYPLSLSEVFYHLTHYSDAEGIASQVIWTVRLPRILMALLAGGALGLCGATLQGVFHNPLVDPHIIGVTSGAAFGGTLAILLGLSPLLMMGSTFFFGLTALILVYAIAALQGLENTLVLILSGIILSGFFAALVSLIQYQADTEETLPNIVFWLLGSFATANWHKVLLLAVPVGIAATVLFQLRWRINLLSLNDKDARALGVAVVPLRRSVLVCCAFLVAAQVAVSGSIAWVGLVIPHLARLLVGVDHRRLLPCAFWLGGGFMIVVDDIARTLMHAEIPLGIITALFGAPLFAFLLIRTSRREKS
>NZ_CP011657.1|WP_032935872.1|137724_138780_+|ABC-transporter-substrate-binding-protein
MLTFRSFVLVCASMLFAFSAQADRTITDQLGRQVTIPDHVDKVVVLQHQTLNILVQLNAQQDIVGVMSSWKKQLGPEFARFMPTITTLPTPGDLTSVNIESLLAIHPQVVFVANYAPAEMIQQIQNAGIPVVAISLRKDADGQQNKMNPTMANEEQVYNEGLKQGIRLIADVVGRKPQAETLIDYVFAARAKFNAPVANIPDAQKVRIYMANPDLMTYGSGKYTGLMMQHAGGLNVAAASVKGARQVALEQVLAWNPQVIFVQDRYPQVVTQIQNDPNWQGIDAVKNHRVWLMPEYAKAWGYPMPEALAIGELWMAKKLYPDAYKDVDVDAQAHDYYQRFYRVNWQSDAAK
>NZ_CP011657.1|WP_032935874.1|136281_137544_+|4-aminobutyrate-transaminase
MNNKNLQQRRLDATPRGVGVMCDFYAQSAENSTITDIEGNQYIDFAAGIAVLNTGHRHPRLVQAVEAQLQAFTHTAYQIVPYESYVSLAEKINAVAPIDGKRKTTFFTTGAEAVENAVKIARAHTGRPGVIAFGGGFHGRTYMTMALTGKVAPYKKGFGPFPGSVYHAPYPSELQGISTADSLKAIERLFKADIDPTQVAAIIFEPVQGEGGFVVAPPEFVAAIRRICDEHGIVMIADEVQSGFARTGQLFAMDHYADKADLMTMAKSLAGGMPLSGVVGKAEIMDAPAPGGLGGTYAGNPLSIAAAHAVLDIIHDEQLCQRAAALGEQLRAALTDAQAGCPELAEVRGLGSMIAAEFCDPATGEPNASAAQRVQKKALEQGLLLLTCGQYGNVIRFLYPLTIPQDQFAKALQIIKAATK
>NZ_CP011657.1|WP_044699937.1|134699_136175_-|PLP-dependent-aminotransferase-family-protein
MRSLAGDVIKHAFSQQTDEKLHRRLYAAICSCILEGSLKPATRMPPSRDLAGELMLSRNTVLRVYEQLQAEGYISARTSSGTFVTDSVLDNLNLRPNKEPVAAALEDHTRLSARCLELLGNASASPRQWGAFIPGVPDVEHFPHRVLKKIQDRLARRLRPEFLTYDAAGGVNELKEALADYLRTARGVRCSPEQILITEGIHQALDLVTRTLCNPGDHAWIEEPGYWGIKNILRINAVNFSAIPVDEQGMVPPDAGETPPKLIFVTPSHQYPLGSVMSLSRRRQLIFRARETRSWIVEDDYDSEFRFSGQPIPSLQGLEEETPVIYIGTFSKTLYPALRLGYVVLPKSLAAPLKKVHNDLYRGGHLLIQAALAEFIREGYYAAHIRKMRQLYSRRRQMLVELISRQLGEHYLGSFSSNAGLHMILQLPAGSDDAVIAQQANAQGLLVRPLSRYYVNEEKRSGLLLGFASIEEHEMSAAFTRLADIFRVNTV
>NZ_CP011657.1|WP_044699939.1|133447_134656_+|c-type-cytochrome
MRNVTILAACLFTASVSAAESNGEYIARISDCVACHTAEGGAAMAGGKKFPTPVGDIYSTNITPDKAQGIGNYSYEDFEKAVRQGIAKDGHPLYPAMPYPSYAKLSDEDVQALYRYFMHDVTPSAQPNKENAIPWLLSARWPLHIWNWLFTDAPATTVDSAKPDENAALIKRGAYLVEGPGHCGSCHTPRGMAMNEKAYTHADAEYLSGAMIDGWYAPSLRGSGMSEQALKSLLLTGKSKHAAVSGSMAEVVTQSTQYLTDEDATAIAQYLLSLKSAKPETVRAAATTASWSNSPEAGKVTYNRYCSTCHGLEGKGTDDNAPSLVNNPLVMVDDPTPLFRVIAHGAETPTTRGSVSFKMPAYGGMLSDNEMRDVINYVRKTWGEGNGEVSHEDLAGIKKASH
>NZ_CP011657.1|WP_044699940.1|131551_133444_+|NAD(P)/FAD-dependent-oxidoreductase
MAITRRDFLNGVAVTIAAGLTPLEWVRATGKGNAFIDGNYYPPALTGLRGNHPGSFEMAHALGREQKHFDLNALPVEEEYDLVIVGGGISGLAAGCFWRQVAGQNSRILILDNHDDFGGHAKRNEFTSSGKKLLGYGGSEAFQSPAHNFSPEVQKLMETVGVSVTRLKESFDVNFYPDWQLSRGVFFDKKNFGVTKIVSGDPGRAVSDDIPPDRLNGRKIEDFINDFPLGENDRKSLIDLHVRPGDYLPGMTVDEKMEWLDTHSYSEFLATKVGLSKMALLYFQQRSNDFFAIGIEGISCSDARACALPGMEGMGLPPLDGESLADLEEPYVYHFPDGNAGLARLLVRYMLPDALPGNTMEDSVLARLHYEKLDLPENTTRLRLNSTVINAANVQDGVVVTYLRDGKMHRVRGKNTIMAGYNMMIPYLVPEMPEQQQADLKLNVKAPLVYTNVVVKNWQAFKQLGVHEFYSPAAPYSRVKLDYPVSIGGYQHPASPDDPMVIHMVYVPTYPGSNLSAREQFRLGRAYLLGTTFAAHEEMIRSQLQEMFGSTGFDNQRDISAITVNRWAHGYAYYANSLFDDMDKMPEIIERARQPVGRIAIANSDSDWSAYAHTAIDQAWRAVNELKDMG
>NZ_CP011657.1|WP_003843506.1|130989_131463_+|hypothetical-protein
MKTVKIAVLSLVMLSGYSLAESTSLNTVKEYMAAWNAHDASRAAQYLADDAVYYDAAAGEPVNGREKAEKEVIGAFIKAVPDLSWKMVGKPVYDEDTVAFRWEFSGKNSGEWAGSPPTNNPIKFEGVSYIHVKAGKITWQGDYYDSKKLDEELKPVK
>NZ_CP011657.1|WP_032935879.1|129550_130978_+|gamma-aminobutyraldehyde-dehydrogenase
MKTLKHFINGHYVAGSSEDSFELVSPVDGETYAISPNANEAEVEQAYSAAEAAFSIWRKSTPAQRQKALLLLADEIERNVEWLVTAQSQETGQLRHFIEKEEIAASCDAIRFFAGAARCLEGKAAGEYSAGFTSTIRREPLGIVGQVTPWNYPFMMAVWKIAPALAAGNTVVLKPSDTTPVSTLLLAELAAPLFPRGAFNVVLGKASTGSLVVSNPKASLVSITGSVRAGLQVAASAAANLTRAHLELGGKAPAVVFADADMDKAIATITTAGFFNAGQDCTAATRILVEQSIYAEFLEKLIQKTKSIKFGPPEDQNALYGALNSRNQLEQVKGFIERLPAHAKIETGGRAGPGPGFYFEPTIVSGLHQNDEAIQHEVFGPVMTIQSFSTDEEALHKANDVEYGLAASVWTSNHGRAQRFSIDLDFGTVWINNHIPLCAEMPHGGFKKSGYGKDLSSYSLEEYTRVKHIMCDISE
>NZ_CP011657.1|WP_016150174.1|142445_143456_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MVKVGINGFGRIGRNVLRAALGNSDIQIVAINDLTDSKTLAHLLKYDSLLGKLDADVAASEGQLVVNGNSITVFSERDPAKIPWRQREVDIVIEATGFFTERDKAAVHIHSGGAKRVIISAPGKNDDLTIVMGVNDHLYSADKHFVVSNGSCTTNGLAPAAQVLHQHFGIKHGLMNTTHAYTNSQALHDQPEKDLRGARAAALSIVPYSSGAAKALGKVIPELDGRLTGYSLRVPVPVVSIVDLTVTLERDVTEEEVNNAFRNAAATGPLKGILGYSDEPLVSSDYQGDPRSSIIDGLSTLVIGGNMVKILAWYDNEWGFSNRLVDLALLMAKNER
>NZ_CP011657.1|WP_003029273.1|143534_144515_-|helix-turn-helix-domain-containing-protein
MKKILIIVPDGGMLFESAGIADIMMQANRLHPKSATETCYQVQLATTQPHQVIHGQSGLNLLADHRLHEIDPREPLDTIIITGRGQNPQEGIAVVDWLRLAAPHARRIASICGGAMLLAQTGLLDGRRATTHWKLLETMQAEFPQVRVESGPLYIQDEHIWTSGGVSSGFDLTLALVEEDYGFSLARDVAQDFVMYLRRPGGQLQFSRYNLQHTSTLGPINDLLVWLLENLTADLSVDKLAEKVAMSPRNFTRVFTRETGASPARYVAEARLAAARQRLEQTNETLERIAEQTGFGSSINLRRLFEKQLHLTPGEYRQRFHCRKMA
>NZ_CP011657.1|WP_003029271.1|144587_145229_-|DUF1120-domain-containing-protein
MITKAYAENTVDVSFSAEMIPAACRVSLDNGGTVDYGTLSLSSIRSSSPYLLTPRVIGLHIQCESLRQVAWMVNDEKAETRVRNLIIDSHDDKTSGRHSSDTLFGLGVTSGQKPIGGYLITALAGESAVEGDIASWGYQTGEQERSMWQSAGTALTLISGIMRLTPVDAKNNPVAIRQLTIPLRISAAIASDGLSLQDETELQGEATISLIYL
>NZ_CP011657.1|WP_047715825.1|145374_145926_-|hypothetical-protein
MIRLISLCCGIYFIVSPVVQAQCNIIASQLRHEYGKVRFQDTEPTGQVQWQQLPARQVQVQVRCDVPQPIHIRFDDNDRRGLDFSFGEEGRATVMFSEAFVDNKSSQFVVHHELNKSSESRSQTPIAVLNGDTVELQQHHQPVNGMSATFLLTVIPRLQARSFQVSDQQASTLSLRMTVPERE
>NZ_CP011657.1|WP_044699931.1|145922_148337_-|fimbrial-biogenesis-usher-protein
MPFNLIRTLPVHRYAYYLFLGLLGSYSMMLSAEPLLFDDGRLKNRGLDAGLSHYFSHAARFSPGEYPVSWVINGRNKRQLMTRFNAQGEPCITPETSRNLGLAYEFNQGCLDYQTLYPAAQLTADPYKNQISITVPTSALTPESILLRKDIIQGGTSGLLNYNLQSSTTVQSGKHETYQLGLFESGLNLNDWLLRSRHTVSYSDGTRRSQRLYTYVQKTFQSLQQTFQAGEIYARQTLLAIPGLTGLQLFPDSALRPARSGVSVQGIARSAQARVEVYQNGQLIEATQVPEGPFSLDNISMLSTQFPLDVKVTEQDGQLTTFSVPVTALQTPADAPLYGSVALGKVRETVASDESAPWLITGSQGMRISRQATLSGSALASAQYQSAAASLSFIPIPAWSLSLQTTMAQEQYTHHAGSKESLSLRYQLNPSASIQAAWTTTSAGFRELSDAVNHTTSTANSYYNVGGNWAHEHLGLFSLSYSTSSARDHAATPKSWYASWSKNWRWAGHGQINLSATWQRVSGSRTSTQRDDDVFYIRLGLPLGHDRVNLSLRRQGSRTYNDVQTSGQWDDMSYSLSAGRDWQNAQNTISGSFGQNLHYAQMSGYASQTANYWGYGGSLSGGISVNQEGILFSPYAIQESYGALSLNSPLSGIKVSTPQGPVWTDYRGKALVPGLTPWQPSRLNIDVKTLPRHVDLTNGAAELTVSRGAVAFTQFRVSDTRRVLMTVRRIDGKLLSKGKGIVDSDGQYVTNSLEKGLVFFSNLQPGESFFVGDDNGSPMCQLQYSLPPTPPQDGLYEELTGVCE
>NZ_CP011657.1|WP_003029264.1|148458_149163_-|fimbria/pilus-periplasmic-chaperone
MRQPFFFWKVLFILSLFLICVPQVSMATGMQPDSSLLLIQEKESGGSMNVTNTDNIPSLLYTQVINVDGEDDTIKLLPTQPVVRVEGGKTQQVRFILKTEKPLITEHLKRVIFEGIPPKIPGSNKIGITIRQNLPVLIHPEGLPERKDPWTLLTWHKEGNQLKVTNPGPYVVRLAQQFVTLPSKTQFDLGRTYLLPGQHITLSSASSLTADNEVRFVPVSRYGVQVSEFIASLN
>NZ_CP011657.1|WP_016150178.1|149262_149967_-|DUF1120-domain-containing-protein
MKLNKLLVALSLTFISGSVLAAGGDTATLKVTGKLVPGACAVNLDNAGIVDYGTMLMTNLSATEDNQLPEKRINMGIKCNSERLVAYTLHDERRDSLYNGVIKNATVDGSDIPASSNQFGLGLTNDGETTLGAYTVINWFPDMTYSGSTDNLVFISKKITSDDWSRTASGSTVNGVDVAARLHTLGNPDTLTPAAFSELKVPLSIKGVLRKGEDLKITDETNLDGEATISLVYL
>NZ_CP011657.1|WP_003836489.1|150192_150498_-|helix-turn-helix-transcriptional-regulator
MHLKYNISNVNARIGRFVRSNRQKMNMSAEELAVELNICQQHVSRFERGQCAFTLEFILRILNVFNIRLSHLVSEVFYEDSQVFSKARNIIQNNSMTKTIN
>NZ_CP011657.1|WP_003836487.1|151464_152154_+|YafY-family-transcriptional-regulator
MTRTERLLELLQILRAQRYPITASTLSERLGISVRSLYRDIKTLQHQGVCIEGGAGIGYIVKSDFHLPPLNLSHEEVNAITLGLNWVSHNTDHDFKIIAKNALAKIHTVISGELKNLIESQSYLIGPSEKNEMFFEDIRNAIKKRKRIKIKYCDKKDSYSSRVIWPIGLVYMESCWLLVAWCEMRNDFRHFRTDKIKEIEQLDSFYSESRAVLLKKWRVKEGISEEKEY
>NZ_CP011657.1|WP_003029256.1|152224_152971_+|SDR-family-oxidoreductase
MNFQNKIAVITGSTTGIGEAVAKQLHIHGAKVIIVARSSEQAKQKAKQLSSQGQQAMGIGCDVSQPEQVRQMIDEVIERFGRLDYAVNNAGLTGDHGKNITEQTVENWDKVIATSLSGVFYCLKYEIPQMMKFGGSIVNLSAVNGLVGIPGLAPYTVAKHGIIGLTQTAALEFACQGIRVNAVAPGYVQTPRMSALPENIVHSFANSHPMKRMAKMQEIADFILFLLSDKSAFCTGGVYPIDGGYLAE

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Crispr_ID: NZ_CP011657_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011657_2

2469615-2469730

Orphan

Consensus_repeat	Method
GTAGGCCTGATAAGCGCAGCGCCATCAGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011657_2

>merge|NZ_CP011657|2|2469615-2469730|CRISPRCasFinder
GTAGGCCTGATAAGCGCAGCGCCATCAGGCAGATCTTTCGCCGGATGCGGCGCAAACGCCTTATCCGGCCTACAACGTGCTACCCCGTAGGCCTGATAAGCGTAGCGCCATCAGGC

>NZ_CP011657|2|2|2469615-2469730|CRISPRCasFinder
GTAGGCCTGATAAGCGCAGCGCCATCAGGC	AGATCTTTCGCCGGATGCGGCGCAAACGCCTTATCCGGCCTACAACGTGCTACCCC
GTAGGCCTGATAAGCGTAGCGCCATCAGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011657.1\|WP_003031720.1\|2477751_2480574_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP011657.1\|WP_003031750.1\|2464860_2465175_+\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|225704
NZ_CP011657.1\|WP_003031733.1\|2473616_2474075_-\|redox-sensitive-transcriptional-activator-SoxR	unknown	unknown	gnl\|CDD\|184964
NZ_CP011657.1\|WP_003031727.1\|2476627_2476909_+\|membrane-protein	unknown	unknown	gnl\|CDD\|374240
NZ_CP011657.1\|WP_044702194.1\|2466866_2467556_-\|LrgB-family-protein	unknown	unknown	gnl\|CDD\|224265
NZ_CP011657.1\|WP_003031719.1\|2480689_2481046_-\|MmcQ/YjbR-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|225197
NZ_CP011657.1\|WP_003031737.1\|2469738_2471385_-\|Na+/H+-antiporter	unknown	unknown	gnl\|CDD\|129911
NZ_CP011657.1\|WP_044702196.1\|2468060_2468951_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176129
NZ_CP011657.1\|WP_003841063.1\|2462664_2464623_+\|acetate--CoA-ligase	unknown	unknown	gnl\|CDD\|234677
NZ_CP011657.1\|WP_003844735.1\|2460794_2462231_-\|ammonia-forming-nitrite-reductase-cytochrome-c552-subunit	unknown	unknown	gnl\|CDD\|236854
NZ_CP011657.1\|WP_003031758.1\|2460183_2460750_-\|cytochrome-c-nitrite-reductase-pentaheme-subunit	unknown	unknown	gnl\|CDD\|183264
NZ_CP011657.1\|WP_003031735.1\|2471542_2472892_-\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NZ_CP011657.1\|WP_003826621.1\|2476975_2477500_-\|single-stranded-DNA-binding-protein-SSB1	unknown	unknown	gnl\|CDD\|236362
NZ_CP011657.1\|WP_003031731.1\|2474161_2474485_+\|superoxide-response-transcriptional-regulator-SoxS	unknown	unknown	gnl\|CDD\|182314
NZ_CP011657.1\|WP_044702199.1\|2469021_2469513_-\|transposase	unknown	unknown	gnl\|CDD\|224854
NZ_CP011657.1\|WP_044702294.1\|2481173_2481887_-\|acid-phosphatase-AphA	unknown	unknown	gnl\|CDD\|236818
NZ_CP011657.1\|WP_003841054.1\|2474487_2476074_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|227279
NZ_CP011657.1\|WP_003031742.1\|2467548_2467959_-\|CidA/LrgA-family-protein	unknown	unknown	gnl\|CDD\|224298
NZ_CP011657.1\|WP_109547143.1\|2458900_2460078_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP011657.1\|WP_003031747.1\|2465171_2466821_+\|cation/acetate-symporter-ActP	unknown	unknown	gnl\|CDD\|236495

Protein	Function_ID	Function_description	E-value
NZ_CP011657.1\|WP_003031720.1\|2477751_2480574_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP011657.1\|WP_003031750.1\|2464860_2465175_+\|DUF485-domain-containing-protein	gnl\|CDD\|225704	COG3162, COG3162, Predicted membrane protein [Function unknown].	2.6138e-50
NZ_CP011657.1\|WP_003031733.1\|2473616_2474075_-\|redox-sensitive-transcriptional-activator-SoxR	gnl\|CDD\|184964	PRK15002, PRK15002, redox-sensitive transcriptional activator SoxR.	6.63854e-107
NZ_CP011657.1\|WP_003031727.1\|2476627_2476909_+\|membrane-protein	gnl\|CDD\|374240	pfam15940, YjcB, Family of unknown function. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length.	2.63994e-40
NZ_CP011657.1\|WP_044702194.1\|2466866_2467556_-\|LrgB-family-protein	gnl\|CDD\|224265	COG1346, LrgB, Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane].	1.49637e-88
NZ_CP011657.1\|WP_003031719.1\|2480689_2481046_-\|MmcQ/YjbR-family-DNA-binding-protein	gnl\|CDD\|225197	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown].	5.53082e-49
NZ_CP011657.1\|WP_003031737.1\|2469738_2471385_-\|Na+/H+-antiporter	gnl\|CDD\|129911	TIGR00831, Putative_Na+/H+_exchanger_Rv2287/MT2345/Mb2309., Na+/H+ antiporter, bacterial form. The Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36) The CPA1 family is a large family of proteins derived from Gram-positive and Gram-negative bacteria, blue green bacteria, yeast, plants and animals. Transporters from eukaryotes have been functionally characterized, and all of these catalyze Na+:H+ exchange. Their primary physiological functions may be in (1) cytoplasmic pH regulation, extruding the H+ generated during metabolism, and (2) salt tolerance (in plants), due to Na+ uptake into vacuoles. This model is specific for the bacterial members of this family. [Transport and binding proteins, Cations and iron carrying compounds].	0
NZ_CP011657.1\|WP_044702196.1\|2468060_2468951_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176129	cd08438, PBP2_CidR, The C-terminal substrate binding domain of LysR-like transcriptional regulator CidR, contains the type 2 periplasmic binding fold. This CD includes the substrate binding domain of CidR which positively up-regulates the expression of cidABC operon in the presence of acetic acid produced by the metabolism of excess glucose. The CidR affects the control of murein hydrolase activity by enhancing cidABC expression in the presence of acetic acid. Thus, up-regulation of cidABC expression results in increased murein hydrolase activity. This substrate binding domain has significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	9.15383e-88
NZ_CP011657.1\|WP_003841063.1\|2462664_2464623_+\|acetate--CoA-ligase	gnl\|CDD\|234677	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.	0
NZ_CP011657.1\|WP_003844735.1\|2460794_2462231_-\|ammonia-forming-nitrite-reductase-cytochrome-c552-subunit	gnl\|CDD\|236854	PRK11125, nrfA, ammonia-forming cytochrome c nitrite reductase.	0
NZ_CP011657.1\|WP_003031758.1\|2460183_2460750_-\|cytochrome-c-nitrite-reductase-pentaheme-subunit	gnl\|CDD\|183264	PRK11659, PRK11659, cytochrome c nitrite reductase pentaheme subunit; Provisional.	5.17591e-111
NZ_CP011657.1\|WP_003031735.1\|2471542_2472892_-\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	8.93463e-145
NZ_CP011657.1\|WP_003826621.1\|2476975_2477500_-\|single-stranded-DNA-binding-protein-SSB1	gnl\|CDD\|236362	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional.	4.66491e-115
NZ_CP011657.1\|WP_003031731.1\|2474161_2474485_+\|superoxide-response-transcriptional-regulator-SoxS	gnl\|CDD\|182314	PRK10219, PRK10219, superoxide response transcriptional regulator SoxS.	9.05826e-64
NZ_CP011657.1\|WP_044702199.1\|2469021_2469513_-\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.40222e-37
NZ_CP011657.1\|WP_044702294.1\|2481173_2481887_-\|acid-phosphatase-AphA	gnl\|CDD\|236818	PRK11009, aphA, class B acid phosphatase.	3.46131e-171
NZ_CP011657.1\|WP_003841054.1\|2474487_2476074_-\|EAL-domain-containing-protein	gnl\|CDD\|227279	COG4943, COG4943, Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms].	0
NZ_CP011657.1\|WP_003031742.1\|2467548_2467959_-\|CidA/LrgA-family-protein	gnl\|CDD\|224298	COG1380, COG1380, Putative effector of murein hydrolase LrgA [General function prediction only].	6.27345e-34
NZ_CP011657.1\|WP_109547143.1\|2458900_2460078_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.76501e-110
NZ_CP011657.1\|WP_003031747.1\|2465171_2466821_+\|cation/acetate-symporter-ActP	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0

>NZ_CP011657.1|WP_044702199.1|2469021_2469513_-|transposase
MSNYRRNYINGGTWFFTVNLQDRRSQLLLSKIDRLRCAISAVQKMKPFYINAWVVLPEHMHCIWTLPENDADFSSRWREIKKHFTRSLSARHIWQPRFWEHTIRDEHDYRQHVDYIYINPVKHGWVKQVQTWPFSTFHRDVRRGLFPHNWAGEIMDFNMGERA
>NZ_CP011657.1|WP_044702196.1|2468060_2468951_+|LysR-family-transcriptional-regulator
MDIRTLRYFVEVVRQQSFTRAAEKLFVTQPTISKMLKNLEDELNCTLLIRDGRRLLLTDTGQVVFERGLAILAEFRQLEAELSDINHLNRGVLRLGIPPMVGMLMAGPISLFRQHYPGVELKVSEFGGLTVQQAVMNGDLDVAMTALPVEEESGLATLPLFSHPLCVLVPRSGQWTTCESISPEALAEHPLLIYNEDFALSRQLLELFSQHNVKPRIAVRSGQWDFLAAMVQAGVGIAILPEPICQRLDKQTLRWIPLESDLRWQLGMIWREGVYLSHSAQAWLKCCEGFWLPQAS
>NZ_CP011657.1|WP_003031742.1|2467548_2467959_-|CidA/LrgA-family-protein
MAVAISRVTPAVIHRLQIPVQVLLYAGLFVFAQYLVSWLHLPLPANLVGMVLMLALIVCRVIPLNWIRAGARWLLAEMLLFFVPAVVAVVNYTQLLLVDGWRIFAVIAISTLMVLGATAWVVDKVYRYEMSRLNRE
>NZ_CP011657.1|WP_044702194.1|2466866_2467556_-|LrgB-family-protein
MSNFQLSLLCLVITLGIYFANKRLYRRFRKLPLMPLVLTPALLVLMLVFGHISWQNYIGESHWLLWLLGPATIAFAVPVYDNLAVIKRHWMSLTAGVVTATLVAVTSSVWLARLFMLPDEIQRSLAVRSVTTPFALAAAEPLGGQPDLVALFVVVTGVFGMAVGDVLFLRLSIREGMAKGAGFGAASHGAGTARSYELGQQEGVVASLVMMLSGVVMVLVAPLVARLMF
>NZ_CP011657.1|WP_003031747.1|2465171_2466821_+|cation/acetate-symporter-ActP
MKRVLTALAATLPFAANAADAISGAVQRQPTNWQAIVMFLIFVIFTLGITYWASKRVRSRNDYYTAGGNITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSLGFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQGPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGLNYHIAVVLVGVLMMMYVLFGGMLATTWVQIIKAVLLLFGASFMAFMVMKHVGFSFNNLFTEAMAVHPKGSAIMSPGGLVKDPISALSLGLGLMFGTAGLPHILMRFFTVSDAREARKSVFYATGFMGYFYILTFIIGFGAIMLVGANPEYKDAAGALIGGNNMAAVHLANAVGGNLFLGFISAVAFATILAVVAGLTLAGASAVSHDLYANVFRKGATEREELKVSKITVLVLGVIAILLGVLFENQNIAFMVGLAFAIAASCNFPIILLSMYWSRLTTRGAMLGGWLGLLTAVVLMILGPTIWVQILGHEKAIFPYEYPALFSISIAFLGIWFFSATDNSEEGNREREQFRAQFIRSQTGYGVEQGRAH
>NZ_CP011657.1|WP_003031750.1|2464860_2465175_+|DUF485-domain-containing-protein
MNDQIYQRIEDSARFRELVEKRQRFATILSIIMLAVYISFILLIAFAPGWLGTPLHAGTSVTRGIPIGVGVILISFILTGIYIWRANGEFDRLNNAVLHEVKAS
>NZ_CP011657.1|WP_003841063.1|2462664_2464623_+|acetate--CoA-ligase
MSQIHKHAIPANIADRCLINPEQYAEKYQQSVNEPDTFWGEQGKILDWIKPYSQVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQANGDRTAIIWEGDDATQSKNITYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSNSRLVITADEGVRAGRAIPLKKNVDDALKNPNVKTVEHVIVLKRTGGKTEWQEGRDLWWSDLIEKASSEHQPEEMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHQGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMSQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGNEKCPVVDTWWQTETGGFMITPLPGATELKAGSATRPFFGVQPAIVDNEGNPLEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVSHPKIAEAAVVGIPHNIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEKQAIAMPS
>NZ_CP011657.1|WP_003844735.1|2460794_2462231_-|ammonia-forming-nitrite-reductase-cytochrome-c552-subunit
MARIKSRVRRFFSLLVPLLFISAVHAEQTPVPAKTVTVEAKNEVFAPQHPDQYLSWKATSEQSAREDALAEDPRLVILWAGYPFSRDYNKPRGHAYAVTDVRETLRTGAPKTAEDGPLPMACWSCKSPDVARLIQKDGEDGYFHGKWARGGPEIVNNLGCGDCHNTASPDFAKGKPELTLSRPYAERAMETIGKPFEKAGRFDQQSMVCGQCHVEYYFDGKNKAVKFPWDDGMKVENMEKYYDTIAFSDWTNSLSKTPMLKAQHPEYETWSAGIHGKNNVTCIDCHMPKVQNAEGKIYTDHKIGNPFDNFAQTCANCHTQDKASLQKVVAERKQAIHDLKIKVEDQLVRAHFEAKAAWDAGATEAEMKPILEDIRHAQWRWDLSIASHGIHMHAPEEGLRMLGSAMDKAADARTKLVRLLATKGITHEIPLPDISTKEKAQAAIGLNMQQINAEKQDFIKTVIPQWEDQARKNGLLSQ
>NZ_CP011657.1|WP_003031758.1|2460183_2460750_-|cytochrome-c-nitrite-reductase-pentaheme-subunit
MSVLRSLLTAGVLASGLLWSLSGITATPTPQESDQRWTVTQQRNPDAACLDCHKPDTEGMHGKHAEAINPNNKLPVTCTNCHGQPSPNHREGVKDVMRFNEPMYNVEQQNSVCMSCHLPEQLQKAFWPHDVHVTKVACASCHSLHPKQDTMQTLSDKGRIKICVDCHSDQRNNPNFNPASVPLLKEHP
>NZ_CP011657.1|WP_109547143.1|2458900_2460078_+|IS3-family-transposase
MTEKHRPSFSPEFKLEAAQLVTEKGYSTREAAEVMGVSHSAMRTWVKQLRSERQGISPKASPLTPEQQKIRELERKIKRIEEEKEILKKGYRSLDVGLPEQFSLVERLKKSFSVKRICDVFGIHRSSYKYWAARPQAISSEKVKLQAEVRKAHNDSKGSAGARTIADIVTSRGQSLSRYRASKLMKELGLVSCQPPKHAYKKAHQEHVAIPNLLDRQFAVTAPNQVWCGDVTYIWTGTQWAYLAVVLDLFARKPVGWAMSLSPDSELTSKALMVAFEARGRPKGLLFHSDQGSHYTSRRFRQQLWRYQIRQSMSRRGNCWDNAPMERLFRSLKTEWMPTTGYRSVNEAKQAITDYLVGYYSQVRPHSYNGGLTPNESERLFWLEHKTVANFS
>NZ_CP011657.1|WP_003031737.1|2469738_2471385_-|Na+/H+-antiporter
MEIFFTILIMTLVVSLSGVFTRVLPFQLPLPLMQIAIGALLAWPTFGLHVEFDPELFLVLFIPPLLFADGWKTPTREFLEHGREIFGLALALVLVTVVGIGFMIYWLVPGIPLIPAFALAAVLSPTDAVALSGIVGEGRIPKKIMGILQGEALMNDASGLVSLKFAVAVAMGTMVFTVGGATLEFFKVAIGGILAGFVVSWLYGRSLRFLSRWGGDEPATQIVLLFLLPFASYLIAEHIGVSGILAAVAAGMTITRSGVMRRAPLAMRLRANSTWAMLEFVFNGMVFLLLGLQLPGILESSLAAAEVDPNVEIWMLFTDIVLIYVALMLVRFGWLWTMKKFSLRFLKKKPMEFGSWTTREILIASFAGVRGAITLAGVLSIPLLLPDGSGFPARYELIFLAAGVILFSLFVGVVMLPILLQHLEVADHSQQQKEERIARAATAEVAIVAIQKMEERLAADTEENIDNQLLTEVSSRVIGNLRRRADGRNDVESSMQEENLERRFRLAALRSERAELYHLRATREISNETLQKLLHDLDLLEALLIENQ
>NZ_CP011657.1|WP_003031735.1|2471542_2472892_-|NCS2-family-permease
MSTPSARTGGSLDAWFKISLRGSTVRQEVVAGLTTFLAMVYSVIVVPGMLGKAGFPPAAVFVATCLVAGVGSIVMGLWANLPLAIGCAISLTAFTAFSLVLGQHISVPVALGAVFLMGVLFTIISATGIRSWILRNLPQGVAHGTGIGIGLFLLLIAANGVGLVIKNPLDGLPVALGDFDTFPVIMSLVGLAVIIGLEKLKVPGGILLTIIGISIVGLIFDPAVHFSGIFAMPSLSDENGNSLIGSLDIMGALNPIVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDGQIIDGGKALTTDSLSSVFSGLVGAAPAAVYIESAAGTAAGGKTGLTAITVGVLFLLILFLSPLSYLVPVYATAPALMYVGLLMLSNVAKIDFADFVDAMAGLVTAVFIVLTCNIVTGIMIGFATLVIGRLVSGEWRKLNIGTVVIAIALVAFYAGGWAI
>NZ_CP011657.1|WP_003031733.1|2473616_2474075_-|redox-sensitive-transcriptional-activator-SoxR
MEKKLPRIKALLTPGEVAKRSGVAVSTLHFYESKGLISSMRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLATIGDALGVLPEGHSLSAKEWKQLSSQWREELDRRIHTLVSLRDELDGCIGCGCLSRSDCPLRNPGDQLGEQGTGARLLEDD
>NZ_CP011657.1|WP_003031731.1|2474161_2474485_+|superoxide-response-transcriptional-regulator-SoxS
MSHQQIIQTLIEWIDEHIDQPLNIEAVAKKSGYSKWYLQRMFRTVTRQTLGDYIRQRRLLLAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRREFDRTPSDYRHRL
>NZ_CP011657.1|WP_003841054.1|2474487_2476074_-|EAL-domain-containing-protein
MNHSARRKLLKLLGTFMVVLLPVVLALWFAQIRAMSETRNQLRSFAQLVLNKTELVILQADLARDMAQLYQGKMCTPAHQKSMLNIIRGRLYISELIYAQGDHFLCSTSMVPPVTYIMPTADYKRTPDIAIYYYRDTPFFAGYRMTYMQRGNYVAVINPLSYSEVMSDDPDLSWGVYDTVTDTFFSASEAANIAQFAPLVRGEASTFQQDDRFYTIVHSEKRPIAIIVSTSDNRVSQIFYHEAALTIPFGIICSILILLMWWRTRQEYLSPRRLLKRAIKKRQLCLHYQPIIDIKNGQCVGAEALLRWPGCKGEVMSPTEFIPLAEKEGMIERITDYVVEEVFNDLGYFLSAHPQLYISINLSASDFHSSRLIALINDKNREYSVAAQQIKVEVTERGFIDVHKMTPVIQAFRKAGYEVAFDDFGTGYSNLHNLSALNVDILKIDKSFISTLSTNSTSHLIAEHIIEMAQSLHLKTIAEGVETKEQIEWLLERGVQYCQGWYFAKALPSQEFMHWIQRSPAILTQSGQ
>NZ_CP011657.1|WP_003031727.1|2476627_2476909_+|membrane-protein
MATITTGVVLLRWQLLSAVLMFLASTLNIRFRKSDYIGLAVISSGLGLVFACWFATGLLGITLVDMSTIWKNIETVMVDVMSHTPPDWPMVLN
>NZ_CP011657.1|WP_003826621.1|2476975_2477500_-|single-stranded-DNA-binding-protein-SSB1
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAPSNEPPMDFDDDIPF
>NZ_CP011657.1|WP_003031720.1|2477751_2480574_+|excinuclease-ABC-subunit-UvrA
MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPVIKERKGEHTKTLENLAGQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVIDRFKVRDDLTQRLAESFETALELSGGTAVVADMDDPKAEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPELSLAGGAIRGWDRRNFYYFQMLKSLAEHYKFDVEAPWASLSPTVHKVVLYGSGKENIEFKYMNDRGDTSVRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCASCEGTRLRREARHVFVENTPLPAISDMSIGHAMDFFNNLKLAGQRAKIAEKILKEIGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRNLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGQVVAEGTLDDIMAVPESLTGQYMSGKRKIEVPKQRVAADPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQTALNGATLAEPAPYRDVQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPESRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHQLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPLL
>NZ_CP011657.1|WP_003031719.1|2480689_2481046_-|MmcQ/YjbR-family-DNA-binding-protein
MTNSELLQYCMAKMGAEQSVHSDWKATQIKVEDVLFAMVKEVEERPAVSLKTSPELAELLRQQHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQAVNTLPADKRRILTQP
>NZ_CP011657.1|WP_044702294.1|2481173_2481887_-|acid-phosphatase-AphA
MRKFTLALSAVCLLFTLNQPAQALVSSPSQLNPGTNVATLAEQAPIHWVSVAQIENSLTGRPPMAVGFDIDDTVLFSSPGFWRGKKTYSPDSEDYLKNPAFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDSIFFVTGRSQTKTETVSKTLSDNFHIPAGNMNPVIFAGDKPGQNTKTQWLQDKNIRMFYGDSDNDITAARDVGIRGIRILRASNSTYKPLPQAGAFGEEVIVNSEY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP011657_1	1.1\|141469\|38\|NZ_CP011657\|CRISPRCasFinder	141469-141506	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	3	0.921

1. spacer 1.1|141469|38|NZ_CP011657|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 3, identity: 0.921

cggacgcaagatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.******..****************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

45792 : 55830

Tupanvirus(14.29%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003832580.1\|45792_46776_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	1.4e-33	38.5
WP_003030574.1\|46791_49179_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_003030571.1\|49183_49483_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
WP_003832584.1\|49636_50617_+	vitamin B12 ABC transporter permease BtuC	A0A2H4IY97	uncultured_Caudovirales_phage	6.7e-15	24.8
WP_003030569.1\|50677_51229_+	glutathione peroxidase	NA	NA	NA	NA
WP_003030567.1\|51228_51978_+	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	9.3e-09	30.3
WP_003836644.1\|52055_52520_+	lipoprotein nlpC	A0A1V0DZX6	Clostridioides_phage	3.5e-14	38.2
WP_003836643.1\|52836_53550_+	EAL domain-containing protein	NA	NA	NA	NA
WP_044699989.1\|53611_55054_+	YdiU family protein	A0A075BSJ0	Microcystis_phage	4.5e-52	35.3
WP_003836641.1\|55050_55830_-	heme ABC transporter ATP-binding protein	A0A285PWH2	Cedratvirus	7.9e-11	26.7

DBSCAN-SWA_2

712176 : 831300

135

Enterobacteria_phage(21.95%)

terminase,tail,holin,integrase,tRNA,head,portal,transposase,protease,capsid

attL 770451:770466|attR 835909:835924

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003034964.1\|712176_713058_-\|protease	protease HtpX	NA	NA	NA	NA
WP_003034960.1\|713250_715299_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	1.2e-87	33.7
WP_003034957.1\|715318_716005_-	RNA chaperone ProQ	NA	NA	NA	NA
WP_003034953.1\|716101_716599_-	GAF domain-containing protein	NA	NA	NA	NA
WP_003841983.1\|716727_718011_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_003034947.1\|717979_720613_+	PqiB family protein	NA	NA	NA	NA
WP_071681312.1\|720692_722114_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_003034943.1\|722211_722451_+	DUF1480 family protein	NA	NA	NA	NA
WP_003034941.1\|722553_722745_+	YebW family protein	NA	NA	NA	NA
WP_003034937.1\|722745_723387_-	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	8.7e-56	50.5
WP_044700293.1\|723799_724138_-	YebY family protein	NA	NA	NA	NA
WP_003034931.1\|724158_725031_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_003034928.1\|725034_725409_-	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_003034925.1\|725552_725783_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	1.0e-14	60.3
WP_003841657.1\|725889_726546_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_003034918.1\|726569_727232_+	exodeoxyribonuclease X	Q6UAU3	Klebsiella_phage	7.0e-08	31.1
WP_044700296.1\|727222_729301_-	oligopeptidase B	NA	NA	NA	NA
WP_016150461.1\|729363_730023_-	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_003034909.1\|730117_730471_-	hypothetical protein	NA	NA	NA	NA
WP_003034906.1\|730592_730883_-	DNA damage-inducible protein YebG	NA	NA	NA	NA
WP_044700298.1\|731014_732193_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
WP_047722290.1\|732260_732902_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_003841668.1\|732936_734748_-	phosphogluconate dehydratase	NA	NA	NA	NA
WP_003034896.1\|734981_736457_-	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	8.3e-78	37.1
WP_003034893.1\|736824_737694_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_003034890.1\|737812_739255_+	pyruvate kinase	NA	NA	NA	NA
WP_032935377.1\|739299_740271_-	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
WP_003034883.1\|740390_741710_-	murein DD-endopeptidase MepM	A8ATH6	Listeria_phage	1.2e-14	36.8
WP_003841677.1\|741725_742670_-	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
WP_003034877.1\|742748_743504_+	zinc ABC transporter ATP-binding protein ZnuC	G3M9Y6	Bacillus_virus	6.5e-18	28.3
WP_003034874.1\|743500_744286_+	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
WP_003034872.1\|744364_745375_-	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	1.6e-08	25.4
WP_003034869.1\|745383_745995_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_003034867.1\|746075_746597_-	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.6e-10	35.1
WP_003034865.1\|746631_747375_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_003034863.1\|747403_747847_-	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
WP_003034862.1\|747848_749621_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_044700301.1\|749909_750476_+	hydrolase	NA	NA	NA	NA
WP_047715748.1\|750841_751084_+	DinI family protein	Q6UAW0	Klebsiella_phage	8.4e-28	75.3
WP_047715746.1\|751151_752225_-\|tail	tail fiber domain-containing protein	Q5G8V6	Enterobacteria_phage	3.8e-88	52.1
WP_046155137.1\|752283_752523_-	hypothetical protein	K7PLZ0	Enterobacterial_phage	7.0e-19	57.1
WP_047715745.1\|752631_753306_-	hypothetical protein	O64337	Escherichia_phage	2.5e-53	50.7
WP_047715743.1\|753306_753621_-	hypothetical protein	K7PJS1	Enterobacterial_phage	4.6e-26	56.9
WP_047715741.1\|753620_756806_-	host specificity protein J	O64335	Escherichia_phage	0.0e+00	87.5
WP_047715740.1\|756859_757450_-\|tail	tail assembly protein	K7PH91	Enterobacterial_phage	2.4e-76	79.0
WP_008322436.1\|757505_757931_-	hypothetical protein	K7PLY8	Enterobacterial_phage	6.6e-12	36.9
WP_047715739.1\|758041_758785_-	hypothetical protein	A0A0P0ZDC0	Stx2-converting_phage	7.9e-61	53.1
WP_080964717.1\|758862_759444_-	Bro-N domain-containing protein	H6WRU8	Salmonella_phage	7.7e-27	38.8
WP_071698655.1\|759517_759685_-	Arc family DNA binding domain-containing protein	G9L6D7	Escherichia_phage	6.6e-16	72.7
WP_047715738.1\|759804_760248_+	Arc family DNA-binding protein	G9L6D6	Escherichia_phage	4.9e-34	60.7
WP_047715737.1\|760254_760965_-	peptidase P60	K7PGR2	Enterobacteria_phage	1.6e-135	91.5
WP_047715736.1\|760966_761722_-\|tail	phage minor tail protein L	K7PGX3	Enterobacteria_phage	2.5e-131	86.5
WP_047715735.1\|761718_762066_-\|tail	phage minor tail protein	K7PJT2	Enterobacteria_phage	9.5e-41	69.6
WP_047715734.1\|762069_765213_-\|tail	phage tail tape measure protein	E4WL33	Enterobacteria_phage	0.0e+00	85.9
WP_071845155.1\|765196_765511_-\|tail	phage tail assembly protein T	E4WL32	Enterobacteria_phage	2.4e-51	91.3
WP_047715733.1\|765519_765951_-\|tail	phage minor tail protein G	M9NZD7	Enterobacteria_phage	7.1e-54	74.1
WP_044700348.1\|765961_766705_-\|tail	phage tail protein	K7PKX6	Enterobacterial_phage	8.1e-114	85.8
WP_044700350.1\|766714_767116_-\|tail	phage tail protein	K7PHM6	Enterobacterial_phage	9.8e-66	89.5
WP_044700352.1\|767112_767691_-\|tail	phage tail protein	K7PMB7	Enterobacterial_phage	1.2e-93	96.4
WP_047715732.1\|767700_767976_-	ATP-binding protein	K7PH43	Enterobacteria_phage	6.8e-26	61.5
WP_047499162.1\|767968_768295_-	DUF2190 family protein	K7PJY3	Enterobacterial_phage	1.2e-29	59.3
WP_047715731.1\|768387_770412_-\|protease	Clp protease ClpP	K7PKX4	Enterobacterial_phage	0.0e+00	84.6
WP_047715730.1\|770356_771865_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	6.6e-256	86.1
770451:770466	attL	NA	NA	NA	NA
WP_001082414.1\|771861_772077_-	hypothetical protein	A5LH28	Enterobacteria_phage	1.5e-25	82.9
WP_047499052.1\|772073_774176_-\|terminase	phage terminase large subunit family protein	K7PH52	Enterobacterial_phage	0.0e+00	87.3
WP_044700360.1\|774175_774664_-	DUF1441 family protein	K7PJY2	Enterobacterial_phage	8.9e-77	94.4
WP_042922208.1\|774888_776427_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	5.7e-271	91.0
WP_042922210.1\|776476_776824_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	4.8e-61	98.3
WP_042922212.1\|776823_777201_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	2.4e-58	90.4
WP_044700519.1\|777844_778804_-	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA
WP_044700520.1\|778817_779348_-	DUF3833 domain-containing protein	NA	NA	NA	NA
WP_044700522.1\|779344_779872_-	hypothetical protein	NA	NA	NA	NA
WP_044700524.1\|779868_780354_-	DUF2878 domain-containing protein	NA	NA	NA	NA
WP_044700526.1\|780350_781571_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_044700528.1\|781567_782290_-	DUF1365 domain-containing protein	NA	NA	NA	NA
WP_044700531.1\|782291_783548_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_044700533.1\|783544_784264_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_044700535.1\|784260_784695_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_044700539.1\|784898_785627_-	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	7.8e-45	44.8
WP_044700540.1\|785862_786447_-	DUF4376 domain-containing protein	Q7BQC6	Enterobacteria_phage	1.1e-46	47.9
WP_044700543.1\|788443_791845_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	70.4
WP_071681833.1\|791917_792595_-\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	2.0e-71	71.1
WP_044700545.1\|792492_793227_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.9e-115	77.9
WP_044700547.1\|793238_793934_-\|tail	phage minor tail protein L	Q687F1	Enterobacteria_phage	1.8e-94	71.0
WP_044700550.1\|793942_794275_-\|tail	tail protein	A0A0P0ZDL9	Stx2-converting_phage	2.0e-40	67.0
WP_044700552.1\|794275_797566_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	65.3
WP_044700554.1\|797813_798176_-\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	2.5e-28	56.8
WP_044700555.1\|798237_798720_-\|tail	major tail shaft subunit	Q6UAX0	Klebsiella_phage	4.7e-62	81.2
WP_044700558.1\|798753_799155_-	hypothetical protein	Q6UAX1	Klebsiella_phage	1.1e-56	85.0
WP_044700560.1\|799151_799541_-	hypothetical protein	Q6UAX2	Klebsiella_phage	1.6e-41	63.7
WP_044700562.1\|799509_799860_-\|head	phage head closure protein	Q6UAX3	Klebsiella_phage	1.6e-43	73.9
WP_003832371.1\|799856_800174_-\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	2.8e-39	79.6
WP_044700565.1\|800154_800532_-	hypothetical protein	Q6UAX5	Klebsiella_phage	3.2e-18	59.5
WP_044700568.1\|800629_801916_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	8.0e-210	87.6
WP_044700569.1\|801988_802909_-	S49 family peptidase	Q6UAX7	Klebsiella_phage	6.0e-135	79.7
WP_044700572.1\|802945_804205_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	7.1e-219	89.0
WP_003832363.1\|804204_804384_-	hypothetical protein	Q6UAX9	Klebsiella_phage	3.3e-13	71.2
WP_016150031.1\|804377_806105_-\|terminase	terminase large subunit	Q8HAD6	Salmonella_phage	0.0e+00	92.8
WP_044700575.1\|806101_806599_-\|terminase	phage terminase small subunit P27 family	Q8HAD7	Salmonella_phage	8.4e-83	93.3
WP_047715729.1\|806832_807195_-	HNH endonuclease	Q6UAS2	Klebsiella_phage	3.7e-56	86.7
WP_044700576.1\|807470_808010_+	cytochrome b	A0A0U2QLA7	Escherichia_phage	6.4e-44	79.0
WP_044700578.1\|808382_808556_-	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
WP_000756041.1\|808760_808991_-	hypothetical protein	NA	NA	NA	NA
WP_057069020.1\|809064_809253_-	hypothetical protein	NA	NA	NA	NA
WP_000066494.1\|809263_809476_-	cold shock protein CspG	A0A1W6JNX5	Morganella_phage	4.6e-22	72.9
WP_079938067.1\|809854_810010_-	DUF2514 family protein	NA	NA	NA	NA
WP_044700634.1\|810047_810245_-	hypothetical protein	K7PHC3	Enterobacterial_phage	3.7e-26	90.8
WP_044700579.1\|810635_810866_-	hypothetical protein	NA	NA	NA	NA
WP_088169141.1\|810862_811396_-	DUF2514 domain-containing protein	NA	NA	NA	NA
WP_044700584.1\|811374_811923_-	lysozyme	K7PM52	Enterobacteria_phage	1.0e-97	93.4
WP_044700586.1\|811894_812173_-\|holin	holin	K7P6H9	Enterobacteria_phage	1.2e-43	96.7
WP_044700587.1\|812326_812515_-	hypothetical protein	NA	NA	NA	NA
WP_080941995.1\|812617_813034_+	hypothetical protein	NA	NA	NA	NA
WP_044700635.1\|813786_814401_-	hypothetical protein	H9C175	Pectobacterium_phage	1.0e-85	76.9
WP_044700591.1\|815451_815811_-	RusA family crossover junction endodeoxyribonuclease	G8C7V6	Escherichia_phage	1.4e-42	65.3
WP_044700593.1\|815813_816014_-	hypothetical protein	H6WRY8	Salmonella_phage	1.2e-16	60.0
WP_071681812.1\|816143_816389_-	hypothetical protein	H6WRY6	Salmonella_phage	2.9e-20	63.0
WP_044700595.1\|816434_816668_-	DinI family protein	K7PM44	Enterobacteria_phage	6.0e-31	83.1
WP_044700597.1\|816954_818046_-	permease	NA	NA	NA	NA
WP_038641364.1\|818145_818442_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_038641366.1\|818509_818935_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	4.3e-51	70.7
WP_038641369.1\|818947_820237_-	arsenite efflux transporter membrane subunit ArsB	A0A2H4J144	uncultured_Caudovirales_phage	9.6e-171	73.8
WP_044700601.1\|820283_822035_-	arsenite efflux transporter ATPase subunit ArsA	NA	NA	NA	NA
WP_038641374.1\|822052_822415_-	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_044700602.1\|822462_822816_-	As(III)-sensing metalloregulatory transcriptional repressor ArsR	A0A2H4J145	uncultured_Caudovirales_phage	4.8e-24	51.9
WP_122984015.1\|822939_823485_-	replication protein	A0A0U2JGJ0	Escherichia_phage	3.2e-67	77.5
WP_122984016.1\|823396_824512_-	hypothetical protein	A0A0U2RT81	Escherichia_phage	8.9e-48	54.0
WP_044700607.1\|824560_825115_-	hypothetical protein	NA	NA	NA	NA
WP_003832309.1\|825118_825331_-	helix-turn-helix transcriptional regulator	A0A077K9X2	Edwardsiella_phage	3.8e-16	59.7
WP_003832307.1\|825436_825817_+	helix-turn-helix domain-containing protein	K7PH71	Enterobacterial_phage	6.5e-19	66.7
WP_044700608.1\|826153_826420_+	hypothetical protein	NA	NA	NA	NA
WP_003832304.1\|826792_827119_+	transcriptional regulator	NA	NA	NA	NA
WP_052739229.1\|827260_829732_+	exonuclease	K7P6V4	Enterobacteria_phage	3.3e-111	38.6
WP_032943036.1\|829798_830014_+	hypothetical protein	A0A0U2RY08	Escherichia_phage	5.7e-20	56.3
WP_044700610.1\|830013_831300_+\|integrase	site-specific integrase	A0A0U2JGI6	Escherichia_phage	5.5e-110	50.4
835909:835924	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1023598 : 1135531

Escherichia_phage(36.54%)

terminase,tail,integrase,tRNA,lysis,head,plate,portal,protease,capsid

attL 1041206:1041225|attR 1143197:1143216

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003035878.1\|1023598_1025359_+\|protease	Lon protease family protein	NA	NA	NA	NA
WP_003035875.1\|1025427_1025946_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_003035871.1\|1026053_1026221_-	ribosome modulation factor	NA	NA	NA	NA
WP_003035868.1\|1026477_1027041_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_003836843.1\|1027037_1028678_-	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_003035862.1\|1028682_1029936_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_003836846.1\|1029950_1031858_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.1e-49	28.4
WP_044700762.1\|1031870_1033979_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_044700763.1\|1034077_1035184_+	MOSC domain-containing protein	NA	NA	NA	NA
WP_003035852.1\|1035180_1035723_-	cell division protein ZapC	NA	NA	NA	NA
WP_044701565.1\|1035888_1036899_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_016149876.1\|1037266_1037842_+	NADPH-dependent FMN reductase	NA	NA	NA	NA
WP_003836853.1\|1037834_1038809_+	sulfonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_044701566.1\|1038805_1039951_+	FMNH2-dependent alkanesulfonate monooxygenase	NA	NA	NA	NA
WP_003035843.1\|1039961_1040753_+	aliphatic sulfonate ABC transporter permease SsuC	NA	NA	NA	NA
WP_032936311.1\|1040749_1041517_+	aliphatic sulfonates ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-29	37.1
1041206:1041225	attL	NA	NA	NA	NA
WP_044701568.1\|1041588_1044201_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	1.6e-18	21.4
WP_003836860.1\|1044467_1045670_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_032936329.1\|1045837_1047238_+\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	3.8e-80	35.9
WP_044701570.1\|1049100_1050291_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_044701572.1\|1050344_1050992_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_003035820.1\|1051020_1051569_-	YcbK family protein	A0A0K1LKR7	Rhodobacter_phage	3.5e-05	32.6
WP_044701574.1\|1051746_1053498_-	L,D-transpeptidase	NA	NA	NA	NA
WP_003846984.1\|1053743_1058204_-	chromosome partition protein MukB	NA	NA	NA	NA
WP_003035809.1\|1058203_1058908_-	chromosome partition protein MukE	NA	NA	NA	NA
WP_003836877.1\|1058888_1060211_-	chromosome partition protein MukF	NA	NA	NA	NA
WP_003846990.1\|1060203_1061007_-\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_003836882.1\|1061142_1061907_+	envelope biogenesis factor ElyC	NA	NA	NA	NA
WP_003035798.1\|1062024_1062918_-	YcbJ family phosphotransferase	NA	NA	NA	NA
WP_003035796.1\|1063082_1063829_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_003035793.1\|1063825_1064008_-	protein YcaR	NA	NA	NA	NA
WP_044701577.1\|1064059_1065292_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_044701579.1\|1065333_1066311_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_003035784.1\|1066307_1068056_-	lipid A ABC transporter ATP-binding protein/permease MsbA	W8CYL7	Bacillus_phage	2.4e-60	30.7
WP_044701581.1\|1068092_1070357_-	ComEC family protein	NA	NA	NA	NA
WP_003035780.1\|1070563_1070848_-	integration host factor subunit beta	A7KV42	Bacillus_phage	9.2e-10	39.1
WP_003035776.1\|1071007_1072681_-	30S ribosomal protein S1	NA	NA	NA	NA
WP_003035772.1\|1072794_1073478_-	(d)CMP kinase	NA	NA	NA	NA
WP_003836891.1\|1073649_1074411_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_003836893.1\|1074549_1075833_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_003847007.1\|1075902_1076991_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	5.9e-81	46.2
WP_016149861.1\|1077203_1077896_-	DUF421 domain-containing protein	NA	NA	NA	NA
WP_003836899.1\|1078032_1079793_+	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA
WP_003035756.1\|1080197_1081055_+	formate transporter FocA	NA	NA	NA	NA
WP_003035753.1\|1081114_1083397_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	3.8e-162	42.0
WP_052746971.1\|1083705_1083927_-	DNA-binding transcriptional regulator	S4TNZ3	Salmonella_phage	2.1e-25	72.6
WP_044701584.1\|1083989_1085183_-	phage late control D family protein	Q6K1G4	Salmonella_virus	2.1e-164	77.6
WP_044701585.1\|1085185_1085650_-\|tail	phage tail protein	A0A0F7LBX3	Escherichia_phage	7.6e-62	74.8
WP_044701587.1\|1085661_1088091_-\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	3.9e-266	76.0
WP_000763326.1\|1088083_1088203_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	3.7e-13	84.6
WP_044701589.1\|1088235_1088517_-\|tail	phage tail assembly protein	A0A0F7LBN9	Escherichia_phage	4.7e-30	79.1
WP_023223221.1\|1088579_1089098_-\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	2.0e-71	75.6
WP_044701591.1\|1089110_1090298_-\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	1.1e-189	82.8
WP_044701594.1\|1090427_1090955_-\|tail	tail assembly chaperone	Q2A0A8	Sodalis_phage	7.5e-13	28.6
WP_044701597.1\|1092809_1093340_-\|tail	phage tail protein I	Q37841	Escherichia_phage	5.6e-101	97.2
WP_044701599.1\|1093332_1094241_-\|plate	baseplate assembly protein	Q37840	Escherichia_phage	5.2e-139	84.4
WP_023223227.1\|1094245_1094593_-\|plate	phage baseplate assembly protein	A0A0F7LDQ1	Escherichia_phage	9.5e-41	71.3
WP_044701601.1\|1094589_1095231_-\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	4.5e-97	83.6
WP_047715975.1\|1095305_1096049_-	hypothetical protein	NA	NA	NA	NA
WP_044701606.1\|1096062_1096518_-	phage virion morphogenesis protein	O80313	Escherichia_phage	1.3e-50	69.1
WP_044701608.1\|1096510_1096978_-\|tail	phage tail protein	U5N0S7	Enterobacteria_phage	9.7e-57	70.3
WP_044701609.1\|1097085_1097499_-\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	1.9e-35	59.9
WP_044701612.1\|1097495_1098005_-	lysozyme	A0A218M4K3	Erwinia_phage	1.9e-77	83.8
WP_000524754.1\|1097988_1098210_-	hypothetical protein	A0A218M4L5	Erwinia_phage	8.7e-24	71.2
WP_001100637.1\|1098200_1098404_-\|tail	tail protein X	U5N3E7	Enterobacteria_phage	8.9e-23	76.1
WP_000177982.1\|1098403_1098904_-\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	3.8e-59	68.5
WP_044701614.1\|1099001_1099760_-\|terminase	terminase endonuclease subunit	Q94MJ2	Enterobacteria_phage	1.3e-79	66.7
WP_044701616.1\|1099763_1100924_-\|capsid	phage major capsid protein, P2 family	A0A0M4R4W2	Salmonella_phage	4.3e-130	63.1
WP_044701617.1\|1100955_1101819_-\|capsid	GPO family capsid scaffolding protein	A0A218M4L9	Erwinia_phage	3.7e-102	66.6
WP_044701619.1\|1101983_1103753_+\|terminase	terminase ATPase subunit family protein	Q9T0R3	Escherichia_phage	8.5e-287	81.0
WP_023223238.1\|1103752_1104790_+\|portal	phage portal protein	Q6K1J0	Salmonella_virus	1.2e-163	79.3
WP_044701651.1\|1105227_1106319_+	MBL fold metallo-hydrolase	Q0H255	Geobacillus_phage	7.0e-05	36.8
WP_044701622.1\|1106334_1106820_-	hypothetical protein	NA	NA	NA	NA
WP_044701624.1\|1106919_1109211_-	replication endonuclease	A0A0F7LBQ2	Escherichia_phage	0.0e+00	74.4
WP_044701626.1\|1109200_1109476_-	hypothetical protein	M1TAP2	Escherichia_phage	4.7e-27	63.7
WP_044701628.1\|1109475_1109775_-	hypothetical protein	M1RZ07	Escherichia_phage	3.6e-20	57.7
WP_044701629.1\|1109774_1109999_-	DUF2732 family protein	Q7Y4C2	Escherichia_virus	1.6e-17	67.6
WP_047722292.1\|1110062_1110563_-	hypothetical protein	M1SV55	Escherichia_phage	3.7e-78	84.3
WP_044701633.1\|1110740_1111097_-	hypothetical protein	A0A0F7LDH4	Escherichia_phage	3.8e-45	76.1
WP_040090132.1\|1111200_1111500_+	helix-turn-helix transcriptional regulator	Q1JS29	Enterobacteria_phage	1.4e-32	73.7
WP_044701636.1\|1111642_1112638_+\|integrase	tyrosine-type recombinase/integrase	A0A0F7LBR0	Escherichia_phage	1.0e-167	87.6
WP_044701640.1\|1112669_1113467_+	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	1.7e-21	26.6
WP_003035749.1\|1113510_1114932_-	amino acid permease	NA	NA	NA	NA
WP_003836902.1\|1115145_1116294_-	MFS transporter	NA	NA	NA	NA
WP_003035746.1\|1116678_1117305_+	hydrolase	NA	NA	NA	NA
WP_003035744.1\|1117414_1118278_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_003035741.1\|1118279_1118897_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	2.8e-75	59.1
WP_032948932.1\|1118907_1121352_-	dimethylsulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	3.5e-222	50.7
WP_003836908.1\|1121588_1122881_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.5e-94	46.1
WP_044701644.1\|1122973_1124317_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.1e-81	41.0
WP_003831898.1\|1124327_1124939_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_046155120.1\|1125050_1129034_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	2.8e-88	49.2
WP_002439523.1\|1129168_1129663_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_003035727.1\|1130210_1131179_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.9e-62	44.3
WP_044701662.1\|1131293_1133060_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	1.8e-23	26.2
WP_003035722.1\|1133060_1134782_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	1.4e-15	23.6
WP_032948928.1\|1134826_1135531_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
1143197:1143216	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2458900 : 2532678

Enterobacteria_phage(40.35%)

terminase,tail,integrase,holin,tRNA,head,portal,transposase,protease,capsid

attL 2457481:2457497|attR 2522169:2522185

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2457481:2457497	attL	NA	NA	NA	NA
WP_109547143.1\|2458900_2460077_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	5.8e-122	67.2
WP_003031758.1\|2460183_2460750_-	cytochrome c nitrite reductase pentaheme subunit	NA	NA	NA	NA
WP_003844735.1\|2460794_2462231_-	ammonia-forming nitrite reductase cytochrome c552 subunit	NA	NA	NA	NA
WP_003841063.1\|2462664_2464623_+	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	4.6e-92	41.3
WP_003031750.1\|2464860_2465175_+	DUF485 domain-containing protein	NA	NA	NA	NA
WP_003031747.1\|2465171_2466821_+	cation/acetate symporter ActP	NA	NA	NA	NA
WP_044702194.1\|2466866_2467556_-	LrgB family protein	NA	NA	NA	NA
WP_003031742.1\|2467548_2467959_-	CidA/LrgA family protein	NA	NA	NA	NA
WP_044702196.1\|2468060_2468951_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_044702199.1\|2469021_2469513_-\|transposase	transposase	NA	NA	NA	NA
WP_003031737.1\|2469738_2471385_-	Na+/H+ antiporter	NA	NA	NA	NA
WP_003031735.1\|2471542_2472892_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	8.8e-159	71.4
WP_003031733.1\|2473616_2474075_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA
WP_003031731.1\|2474161_2474485_+	superoxide response transcriptional regulator SoxS	NA	NA	NA	NA
WP_003841054.1\|2474487_2476074_-	EAL domain-containing protein	NA	NA	NA	NA
WP_003031727.1\|2476627_2476909_+	membrane protein	NA	NA	NA	NA
WP_003826621.1\|2476975_2477500_-	single-stranded DNA-binding protein SSB1	A0A0A0P1Q9	Enterobacteria_phage	1.1e-53	94.5
WP_003031720.1\|2477751_2480574_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	55.6
WP_003031719.1\|2480689_2481046_-	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA
WP_044702294.1\|2481173_2481887_-	acid phosphatase AphA	NA	NA	NA	NA
WP_044702292.1\|2482135_2483329_-	aromatic amino acid transaminase	NA	NA	NA	NA
WP_003031716.1\|2483457_2484537_-	alanine racemase	A0A0P0YM39	Yellowstone_lake_mimivirus	3.1e-29	28.5
WP_003826610.1\|2484553_2485969_-	replicative DNA helicase	O80281	Escherichia_phage	1.8e-199	77.9
WP_003841359.1\|2486033_2487017_+	quinone oxidoreductase	NA	NA	NA	NA
WP_003031713.1\|2487318_2487561_-	envelope stress response protein PspG	NA	NA	NA	NA
WP_139239398.1\|2487694_2488732_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_047722298.1\|2488819_2489914_+\|integrase	site-specific integrase	S5MDN5	Escherichia_phage	2.1e-179	85.0
WP_047722299.1\|2489946_2490336_-	DNA polymerase V	Q1MVE7	Enterobacteria_phage	2.3e-51	72.1
WP_047715748.1\|2490414_2490657_+	DinI family protein	Q6UAW0	Klebsiella_phage	8.4e-28	75.3
WP_047715746.1\|2490724_2491798_-\|tail	tail fiber domain-containing protein	Q5G8V6	Enterobacteria_phage	3.8e-88	52.1
WP_052941158.1\|2492204_2492702_-	hypothetical protein	O64337	Escherichia_phage	8.5e-35	50.3
WP_080964712.1\|2492789_2496437_-	DUF1983 domain-containing protein	O64335	Escherichia_phage	0.0e+00	80.7
WP_047722302.1\|2496487_2497075_-\|tail	tail assembly protein	K7P6V1	Enterobacteria_phage	1.0e-71	74.3
WP_071845168.1\|2497133_2497472_-	hypothetical protein	NA	NA	NA	NA
WP_047722306.1\|2497502_2498213_-	peptidase P60	K7PGR2	Enterobacteria_phage	1.7e-137	91.9
WP_047722307.1\|2498214_2498970_-\|tail	phage minor tail protein L	K7PGX3	Enterobacteria_phage	2.4e-129	85.7
WP_047722308.1\|2498966_2499314_-\|tail	phage minor tail protein	K7PJT2	Enterobacteria_phage	3.4e-38	68.7
WP_047722309.1\|2499317_2501834_-\|tail	phage tail tape measure protein	K7PKR0	Enterobacteria_phage	4.6e-312	69.1
WP_071524448.1\|2501811_2502132_-\|tail	phage tail assembly protein T	K7PHE1	Enterobacteria_phage	2.7e-34	69.8
WP_047722310.1\|2502140_2502548_-\|tail	phage minor tail protein G	K7PM17	Enterobacteria_phage	2.0e-26	59.3
WP_047722312.1\|2502584_2503322_-\|tail	tail fiber protein	O64327	Escherichia_phage	1.8e-81	62.4
WP_003034811.1\|2503329_2503728_-\|tail	tail protein	K7P7G5	Enterobacteria_phage	1.2e-60	82.6
WP_047722313.1\|2503724_2504279_-\|tail	phage tail protein	K7P7A8	Enterobacteria_phage	8.0e-74	92.0
WP_047722314.1\|2504288_2504642_-\|tail	tail attachment protein	K7P6U9	Enterobacteria_phage	7.6e-46	74.4
WP_047722315.1\|2504653_2505058_-	DNA-packaging protein	O64323	Escherichia_phage	3.2e-24	53.1
WP_003034798.1\|2505103_2506129_-\|capsid	major capsid protein	K7PGW9	Enterobacteria_phage	1.9e-182	92.7
WP_003826193.1\|2506196_2506529_-\|head	head decoration protein	E4WL24	Enterobacteria_phage	5.0e-47	82.7
WP_047722316.1\|2506538_2507855_-	S49 family peptidase	O64320	Escherichia_phage	2.2e-186	78.5
WP_003826190.1\|2507835_2509428_-\|portal	phage portal protein	E4WL21	Enterobacteria_phage	9.7e-290	92.1
WP_003034782.1\|2509424_2509631_-\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	3.2e-28	95.5
WP_047722317.1\|2509630_2511553_-\|terminase	phage terminase large subunit family protein	E4WL19	Enterobacteria_phage	0.0e+00	97.0
WP_000453624.1\|2511527_2512073_-\|terminase	terminase small subunit	E4WL18	Enterobacteria_phage	1.2e-95	100.0
WP_047722320.1\|2512323_2513052_-	hypothetical protein	M9NZE9	Enterobacteria_phage	3.6e-106	82.6
WP_153752826.1\|2513066_2513240_-	hypothetical protein	NA	NA	NA	NA
WP_047722321.1\|2513363_2513903_-	DUF2514 domain-containing protein	A0A0A0P0G7	Enterobacteria_phage	9.7e-08	52.4
WP_047722322.1\|2513899_2514517_-	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	1.7e-93	80.9
WP_000250463.1\|2514516_2514798_-\|holin	phage holin family protein	A0A0U2SHD1	Escherichia_phage	3.1e-18	50.0
WP_008784467.1\|2514784_2515171_-	membrane protein	A0A192Y8P2	Salmonella_phage	1.0e-56	92.2
WP_047722324.1\|2515317_2516370_-	site-specific DNA-methyltransferase	Q8SBE2	Shigella_phage	1.2e-171	81.3
WP_003034749.1\|2516520_2516712_-	hypothetical protein	Q8SBE3	Shigella_phage	1.3e-23	85.7
WP_047722325.1\|2516952_2517642_-	antitermination protein	NA	NA	NA	NA
WP_047722327.1\|2517663_2518659_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.5e-144	69.9
WP_003034743.1\|2518655_2519342_-	phage regulatory protein/antirepressor Ant	G0ZND1	Cronobacter_phage	9.9e-58	53.8
WP_003034741.1\|2519355_2519742_-	RusA family crossover junction endodeoxyribonuclease	A0A192Y8N5	Salmonella_phage	4.1e-61	89.1
WP_047722328.1\|2519738_2521673_-	DNA methyltransferase	H9C171	Pectobacterium_phage	1.1e-199	53.5
WP_047722329.1\|2521665_2522988_-	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	1.4e-116	52.1
2522169:2522185	attR	NA	NA	NA	NA
WP_047722330.1\|2522984_2523851_-	GntR family transcriptional regulator	U5P0A0	Shigella_phage	4.5e-39	82.3
WP_071845170.1\|2523840_2524020_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	3.9e-14	71.2
WP_047722332.1\|2524192_2524744_-	hypothetical protein	Q8SBF4	Shigella_phage	5.4e-46	53.5
WP_044702968.1\|2524772_2525015_-	chaperone TorD	NA	NA	NA	NA
WP_044702969.1\|2525151_2525838_+	helix-turn-helix transcriptional regulator	A0A0N7C1P9	Escherichia_phage	2.3e-38	42.0
WP_044702970.1\|2525829_2526711_-	NAD-dependent DNA ligase	U3PB51	Vibrio_phage	2.0e-34	29.8
WP_044702971.1\|2526925_2527291_+\|protease	Clp protease	A0A1C9IHZ4	Salmonella_phage	1.7e-11	51.6
WP_047722335.1\|2527626_2527998_+	hypothetical protein	Q8HAA1	Salmonella_phage	4.1e-58	91.9
WP_003034720.1\|2528054_2528882_+	YfdQ family protein	Q8HAA2	Salmonella_phage	1.0e-141	92.0
WP_003034717.1\|2529010_2529550_+	hypothetical protein	A0A192Y8M4	Salmonella_phage	8.0e-79	79.3
WP_047722336.1\|2529710_2529965_+	hypothetical protein	NA	NA	NA	NA
WP_047722338.1\|2529961_2530306_+	hypothetical protein	NA	NA	NA	NA
WP_052941159.1\|2530298_2530826_+	hypothetical protein	H6WRY2	Salmonella_phage	4.8e-28	82.4
WP_047722339.1\|2530827_2531400_+	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	3.0e-92	81.6
WP_020838472.1\|2531438_2531711_+	Pyocin activator protein PrtN	S5MQM5	Escherichia_phage	1.2e-38	89.8
WP_047722340.1\|2532144_2532678_-	hypothetical protein	K7PKJ4	Enterobacteria_phage	8.7e-86	84.7

DBSCAN-SWA_5

3369490 : 3418635

uncultured_Caudovirales_phage(50.0%)

transposase,tRNA,integrase,protease

attL 3370609:3370633|attR 3381518:3381542

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016151075.1\|3369490_3370375_-	adenine-specific DNA-methyltransferase	M4QNN5	Ostreococcus_lucimarinus_virus	2.8e-28	32.8
3370609:3370633	attL	NA	NA	NA	NA
WP_047715943.1\|3370664_3371888_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.1e-219	88.0
WP_052941160.1\|3371884_3372238_+	hypothetical protein	NA	NA	NA	NA
WP_087451024.1\|3372264_3373385_-\|transposase	IS3-like element ISSen4 family transposase	S5WIU1	Leptospira_phage	1.7e-51	42.8
WP_052941161.1\|3373397_3373841_+	hypothetical protein	NA	NA	NA	NA
WP_047715942.1\|3373935_3374136_+	AlpA family transcriptional regulator	A0A2H4JB58	uncultured_Caudovirales_phage	2.7e-24	83.3
WP_071681840.1\|3374925_3375591_+	host cell division inhibitor Icd-like protein	A0A2H4JGN8	uncultured_Caudovirales_phage	9.7e-42	74.1
WP_024153894.1\|3375583_3375808_+	hypothetical protein	A0A2H4JBA1	uncultured_Caudovirales_phage	2.3e-16	75.9
WP_047715937.1\|3375804_3376173_+	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	1.7e-56	89.3
WP_047715935.1\|3376169_3377543_+	AAA family ATPase	A0A2H4JFA4	uncultured_Caudovirales_phage	6.4e-173	67.7
WP_047715934.1\|3377738_3378452_-	HEPN domain-containing protein	NA	NA	NA	NA
WP_044067013.1\|3378603_3378798_+	hypothetical protein	NA	NA	NA	NA
WP_100216202.1\|3380131_3381300_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	8.4e-166	89.5
WP_000462905.1\|3381606_3381903_-	DNA-binding transcriptional regulator Fis	NA	NA	NA	NA
3381518:3381542	attR	NA	NA	NA	NA
WP_003025224.1\|3381928_3382894_-\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_044701349.1\|3383192_3383969_-	carbonic anhydrase family protein	NA	NA	NA	NA
WP_016151073.1\|3384096_3384978_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_016151072.1\|3384989_3386441_-	sodium/pantothenate symporter	NA	NA	NA	NA
WP_003025216.1\|3386430_3386673_-	YhdT family protein	NA	NA	NA	NA
WP_003025213.1\|3386780_3388130_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_003025210.1\|3388140_3388611_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_003839882.1\|3389003_3389603_-	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA
WP_044701347.1\|3389603_3390608_-	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA
WP_016151069.1\|3390727_3391702_-	oxidoreductase	NA	NA	NA	NA
WP_044701343.1\|3391927_3393868_+	RNase E specificity factor CsrD	NA	NA	NA	NA
WP_153752135.1\|3393876_3394197_-	hypothetical protein	NA	NA	NA	NA
WP_000913396.1\|3394174_3395218_+	rod shape-determining protein	F2Y0P3	Organic_Lake_phycodnavirus	6.7e-05	22.3
WP_003844819.1\|3395284_3396307_+	rod shape-determining protein MreC	NA	NA	NA	NA
WP_003025196.1\|3396307_3396796_+	rod shape-determining protein MreD	NA	NA	NA	NA
WP_003839891.1\|3396803_3397397_+	septum formation inhibitor Maf	NA	NA	NA	NA
WP_003025190.1\|3397386_3398856_+	ribonuclease G	NA	NA	NA	NA
WP_044701342.1\|3398967_3402783_+	AsmA2 domain-containing protein	NA	NA	NA	NA
WP_044701339.1\|3402944_3404390_+\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_003839896.1\|3404476_3405406_-	HTH-type transcriptional activator AaeR	NA	NA	NA	NA
WP_003025177.1\|3405590_3405794_+	AaeX family protein	NA	NA	NA	NA
WP_003025174.1\|3405801_3406734_+	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA
WP_003025171.1\|3406739_3408707_+	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA
WP_003025168.1\|3408826_3409105_+	hypothetical protein	NA	NA	NA	NA
WP_003025165.1\|3409162_3409429_-	peroxide/acid stress response protein YhcN	NA	NA	NA	NA
WP_003025162.1\|3409805_3410276_-	transcriptional regulator ArgR	NA	NA	NA	NA
WP_003025158.1\|3410712_3411648_+	malate dehydrogenase	NA	NA	NA	NA
WP_003025154.1\|3411704_3412772_-	outer membrane-stress sensor serine endopeptidase DegS	NA	NA	NA	NA
WP_044701337.1\|3412861_3414229_-\|protease	serine endoprotease DegQ	A0A1B1IT49	uncultured_Mediterranean_phage	1.5e-20	25.6
WP_003025147.1\|3414397_3414796_-	DUF1043 family protein	NA	NA	NA	NA
WP_044701335.1\|3414988_3416116_+	cell division protein ZapE	NA	NA	NA	NA
WP_003025141.1\|3416334_3416763_+	50S ribosomal protein L13	NA	NA	NA	NA
WP_003025138.1\|3416778_3417171_+	30S ribosomal protein S9	NA	NA	NA	NA
WP_003025132.1\|3417487_3418126_+	stringent starvation protein A	NA	NA	NA	NA
WP_003025130.1\|3418131_3418635_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	7.3e-26	54.8

DBSCAN-SWA_6

4113993 : 4126250

Enterobacteria_phage(80.0%)

integrase

attL 4097368:4097382|attR 4130599:4130613

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4097368:4097382	attL	NA	NA	NA	NA
WP_071681355.1\|4113993_4114212_+	hypothetical protein	G8C7R9	Escherichia_phage	1.2e-20	69.1
WP_044699584.1\|4114385_4115591_-	DUF4236 domain-containing protein	NA	NA	NA	NA
WP_044699583.1\|4116203_4118537_-	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	83.4
WP_000743156.1\|4118548_4118869_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_024173160.1\|4118865_4119093_-	hypothetical protein	NA	NA	NA	NA
WP_044699580.1\|4119197_4119647_-	hypothetical protein	Q7M298	Enterobacteria_phage	1.1e-44	67.3
WP_044699579.1\|4119639_4119939_-	hypothetical protein	Q7M2A0	Enterobacteria_phage	7.7e-31	67.7
WP_047715918.1\|4119931_4120531_-	ash family protein	Q7M2A7	Enterobacteria_phage	2.8e-48	77.4
WP_016242327.1\|4120527_4120794_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.8e-24	64.8
WP_047715917.1\|4121345_4122149_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	9.6e-12	25.2
WP_000984214.1\|4122145_4122388_+	hypothetical protein	Q7M294	Enterobacteria_phage	1.4e-19	58.0
WP_044699572.1\|4122404_4122980_+	hypothetical protein	Q7M2A1	Enterobacteria_phage	1.1e-38	50.8
WP_044699570.1\|4123620_4125039_+	hypothetical protein	NA	NA	NA	NA
WP_016242323.1\|4125050_4126250_-\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	5.3e-107	50.9
4130599:4130613	attR	NA	NA	NA	NA

DBSCAN-SWA_7

4657217 : 4728735

Enterobacteria_phage(26.32%)

integrase,tRNA,transposase,protease,capsid

attL 4673190:4673237|attR 4688574:4688621

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044702103.1\|4657217_4658165_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	2.2e-07	25.6
WP_032936682.1\|4658148_4658880_+	ABC transporter permease	NA	NA	NA	NA
WP_003027354.1\|4658860_4658968_-	protein YohO	NA	NA	NA	NA
WP_003844381.1\|4659019_4659751_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	1.8e-105	93.5
WP_003027348.1\|4659976_4661662_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.7e-281	91.6
WP_003840155.1\|4661658_4662378_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_003027346.1\|4662424_4662895_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	4.9e-64	76.9
WP_003840158.1\|4662937_4663396_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	5.1e-50	68.0
WP_003844377.1\|4663602_4665636_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	4.0e-54	27.6
WP_003027343.1\|4665800_4666910_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_044702105.1\|4667175_4667460_+	DUF2574 family protein	NA	NA	NA	NA
WP_044702107.1\|4667732_4668311_+	fimbrial protein	NA	NA	NA	NA
WP_044702109.1\|4668374_4669058_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_044702112.1\|4669072_4671559_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_127746369.1\|4671530_4672538_+	hypothetical protein	NA	NA	NA	NA
WP_016150637.1\|4672591_4672924_-	hypothetical protein	NA	NA	NA	NA
4673190:4673237	attL	NA	NA	NA	NA
WP_044702114.1\|4673320_4674622_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_127791446.1\|4674705_4675422_+	hypothetical protein	NA	NA	NA	NA
WP_044702117.1\|4675428_4676244_+	hypothetical protein	NA	NA	NA	NA
WP_044702119.1\|4676309_4676498_-	hypothetical protein	NA	NA	NA	NA
WP_044702121.1\|4676503_4677064_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_044702123.1\|4679818_4680265_+	hypothetical protein	NA	NA	NA	NA
WP_044702126.1\|4680273_4680555_+	hypothetical protein	NA	NA	NA	NA
WP_080942041.1\|4680802_4681066_+	hypothetical protein	NA	NA	NA	NA
WP_044702129.1\|4681058_4681397_+	hypothetical protein	NA	NA	NA	NA
WP_044702132.1\|4682124_4682349_+	hypothetical protein	NA	NA	NA	NA
WP_044702134.1\|4682345_4682708_+	hypothetical protein	NA	NA	NA	NA
WP_044702135.1\|4682724_4683756_+\|capsid	phage capsid E family protein	NA	NA	NA	NA
WP_100216202.1\|4685399_4686568_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	8.4e-166	89.5
WP_044701865.1\|4687233_4687908_+	hypothetical protein	I7I023	Enterobacteria_phage	6.3e-73	76.1
WP_044701866.1\|4687933_4688176_-	hypothetical protein	NA	NA	NA	NA
WP_044701867.1\|4688670_4689453_+	hydroxyethylthiazole kinase	NA	NA	NA	NA
4688574:4688621	attR	NA	NA	NA	NA
WP_044701870.1\|4689455_4690256_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_003027325.1\|4690298_4691045_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_044701874.1\|4691018_4691984_-	sugar kinase	NA	NA	NA	NA
WP_044701877.1\|4691980_4692985_-	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	4.1e-12	27.7
WP_003027315.1\|4692981_4694259_-	MFS transporter	NA	NA	NA	NA
WP_071681969.1\|4694242_4694476_-	hypothetical protein	NA	NA	NA	NA
WP_003027312.1\|4694511_4695564_+	class I fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_003027310.1\|4695586_4696486_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	2.8e-12	28.6
WP_003834417.1\|4696617_4697349_-	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003840185.1\|4697610_4698279_-	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_003027301.1\|4698278_4698995_-	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_044701878.1\|4699001_4699733_-	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003027295.1\|4699749_4700478_-	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	1.1e-27	36.0
WP_044701881.1\|4700703_4701219_-	lipoprotein	NA	NA	NA	NA
WP_001160725.1\|4701345_4701669_+	heavy metal-binding domain-containing protein	NA	NA	NA	NA
WP_044701884.1\|4701665_4702496_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA
WP_003840192.1\|4702601_4703615_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_044701955.1\|4703712_4705143_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_044701886.1\|4705153_4706155_-	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_003027264.1\|4706191_4707910_-	ubiquinone-dependent pyruvate dehydrogenase	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	8.9e-31	23.8
WP_044701888.1\|4708062_4708497_+	DoxX family protein	NA	NA	NA	NA
WP_044701891.1\|4708572_4710186_-	FAD-NAD(P)-binding protein	NA	NA	NA	NA
WP_003027256.1\|4710385_4711354_-	NADH oxidoreductase	NA	NA	NA	NA
WP_044701892.1\|4711364_4713017_-	hydroxylamine reductase	NA	NA	NA	NA
WP_044701893.1\|4713172_4714072_-	lysine exporter LysO family protein	NA	NA	NA	NA
WP_003840208.1\|4714216_4714912_-	aquaporin Z	NA	NA	NA	NA
WP_003036822.1\|4715283_4716942_+	ATP-dependent endonuclease	NA	NA	NA	NA
WP_016150622.1\|4716938_4717886_-	DUF535 domain-containing protein	NA	NA	NA	NA
WP_016150621.1\|4718045_4719161_+	macrolide transporter subunit MacA	NA	NA	NA	NA
WP_003840216.1\|4719157_4721104_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.4e-40	41.8
WP_003036813.1\|4721178_4721403_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	3.6e-17	62.7
WP_003036810.1\|4721726_4722047_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	3.5e-13	45.7
WP_003036804.1\|4722077_4724354_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.4e-164	42.1
WP_044701894.1\|4724623_4725985_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	5.3e-204	92.9
WP_003841759.1\|4726144_4726477_-	YegP family protein	NA	NA	NA	NA
WP_003036797.1\|4726612_4727335_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	9.2e-30	32.7
WP_003844344.1\|4727331_4728735_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	5.0e-32	29.2

DBSCAN-SWA_8

4779924 : 4787549

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003844299.1\|4779924_4780467_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.3e-56	60.7
WP_003844298.1\|4780483_4781572_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.1e-98	52.0
WP_044701929.1\|4781571_4782471_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.0e-30	36.0
WP_044701931.1\|4782509_4783382_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.7e-107	65.2
WP_032936740.1\|4783714_4785121_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	1.4e-37	28.5
WP_044701934.1\|4785319_4786486_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	1.5e-114	55.0
WP_044701936.1\|4786544_4787549_-	NAD-dependent epimerase	A0A0K0KW07	Prochlorococcus_phage	1.9e-17	32.2

DBSCAN-SWA_9

4939949 : 4966884

Escherichia_phage(19.35%)

transposase,integrase,holin

attL 4933414:4933428|attR 4959078:4959092

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4933414:4933428	attL	NA	NA	NA	NA
WP_003034686.1\|4939949_4940693_-	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	3.2e-25	31.3
WP_003034689.1\|4940733_4941129_-	membrane protein	NA	NA	NA	NA
WP_101677548.1\|4941181_4941946_-	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	1.4e-55	78.7
WP_047715903.1\|4941933_4943247_-\|integrase	site-specific integrase	Q8W658	Enterobacteria_phage	3.9e-236	89.9
WP_003034696.1\|4943305_4943542_-	excisionase family protein	Q8W657	Enterobacteria_phage	2.1e-39	92.3
WP_047715901.1\|4943581_4944016_-	hypothetical protein	NA	NA	NA	NA
WP_047715899.1\|4944012_4944435_-	HNH endonuclease	C6ZR29	Salmonella_phage	2.5e-67	85.0
WP_052941163.1\|4944436_4944853_-	hypothetical protein	A0A125RNQ8	Pseudomonas_phage	6.3e-07	31.1
WP_047715896.1\|4944849_4945341_-	hypothetical protein	NA	NA	NA	NA
WP_052941164.1\|4945337_4945829_-	hypothetical protein	A0A0F6N6A6	Escherichia_phage	4.7e-09	40.5
WP_047715894.1\|4945825_4946653_-	hypothetical protein	K7PKM7	Enterobacterial_phage	6.9e-122	84.4
WP_047715892.1\|4947822_4948029_+	hypothetical protein	K7P7I0	Enterobacteria_phage	7.4e-17	69.1
WP_047715889.1\|4948067_4948418_-	hypothetical protein	NA	NA	NA	NA
WP_047715886.1\|4948417_4948852_-	hypothetical protein	NA	NA	NA	NA
WP_047715883.1\|4948868_4949621_-	helix-turn-helix transcriptional regulator	A0A2I6PIE7	Escherichia_phage	1.5e-75	55.8
WP_047715881.1\|4949655_4949907_+	hypothetical protein	A0A2I6PIE5	Escherichia_phage	2.7e-13	52.2
WP_047715878.1\|4949935_4950490_+	hypothetical protein	U5P4K1	Shigella_phage	2.2e-47	51.9
WP_047715876.1\|4950822_4951806_+	hypothetical protein	S5FM81	Shigella_phage	2.6e-59	71.9
WP_047715874.1\|4951808_4952252_+	hypothetical protein	U5P0U0	Shigella_phage	4.8e-13	31.1
WP_047715872.1\|4952251_4952920_+	DNA methyltransferase	I6PDF5	Cronobacter_phage	9.9e-95	79.1
WP_047715870.1\|4952906_4953125_+	hypothetical protein	NA	NA	NA	NA
WP_047715867.1\|4953126_4953447_+	LexA family transcriptional regulator	K7PHB4	Enterobacterial_phage	2.2e-28	57.7
WP_047715865.1\|4953443_4953833_+	RusA family crossover junction endodeoxyribonuclease	A5LH74	Enterobacteria_phage	7.9e-44	66.7
WP_080964714.1\|4953849_4954575_+	phage regulatory protein/antirepressor Ant	G0ZND1	Cronobacter_phage	2.0e-56	54.0
WP_047715863.1\|4954571_4955561_+	DUF968 domain-containing protein	K7PJS6	Enterobacterial_phage	1.1e-142	71.7
WP_047715860.1\|4955575_4956154_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.7e-47	56.7
WP_044703006.1\|4956750_4957329_+	hypothetical protein	NA	NA	NA	NA
WP_008323296.1\|4957428_4957824_+	membrane protein	K7PHB9	Enterobacterial_phage	2.6e-50	81.7
WP_046155109.1\|4957810_4958092_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	5.5e-39	88.2
WP_044703002.1\|4958091_4958709_+	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	4.4e-81	72.2
WP_047715857.1\|4958716_4958986_+	hypothetical protein	G8C7W1	Escherichia_phage	9.0e-23	71.3
WP_080941989.1\|4959173_4959467_+	hypothetical protein	Q8W634	Enterobacteria_phage	1.4e-21	61.9
4959078:4959092	attR	NA	NA	NA	NA
WP_044702996.1\|4959536_4959773_+	hypothetical protein	NA	NA	NA	NA
WP_044702995.1\|4959964_4960489_+	Rha family transcriptional regulator	G8C7W4	Escherichia_phage	4.9e-89	96.0
WP_044703079.1\|4960567_4961077_+	hypothetical protein	NA	NA	NA	NA
WP_044703081.1\|4961555_4961759_+	hypothetical protein	A0A1W6JPG4	Morganella_phage	2.0e-06	62.9
WP_042922212.1\|4961922_4962300_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	2.4e-58	90.4
WP_042922210.1\|4962299_4962647_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	4.8e-61	98.3
WP_042922208.1\|4962696_4964235_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	5.7e-271	91.0
WP_044702835.1\|4965674_4965911_+	hypothetical protein	NA	NA	NA	NA
WP_044702837.1\|4966215_4966884_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.3e-81	60.8

DBSCAN-SWA_10

4972800 : 4982491

uncultured_Caudovirales_phage(44.44%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003841892.1\|4972800_4974051_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.9e-22	96.3
WP_003030767.1\|4974189_4974699_-	hypothetical protein	NA	NA	NA	NA
WP_003840850.1\|4974873_4975116_-	DinI family protein	Q6UAW0	Klebsiella_phage	1.5e-29	77.9
WP_071681874.1\|4975194_4975428_+	DNA polymerase V	A0A222YZE2	Escherichia_phage	6.6e-22	80.3
WP_008320415.1\|4975504_4976203_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	3.8e-89	68.1
WP_003030762.1\|4976288_4976609_+	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	3.2e-19	44.8
WP_016150088.1\|4976653_4977943_+	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	3.2e-166	70.4
WP_044702844.1\|4977955_4978381_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	4.7e-50	70.7
WP_032948081.1\|4979269_4979755_+	outer membrane beta-barrel protein	A0A1B0VBR9	Salmonella_phage	2.3e-08	34.9
WP_044702845.1\|4979765_4980020_+	hypothetical protein	NA	NA	NA	NA
WP_032949082.1\|4980285_4980558_-	hypothetical protein	NA	NA	NA	NA
WP_100216202.1\|4981322_4982491_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	8.4e-166	89.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP011655

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1155 : 51997

Salmonella_phage(98.28%)

tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_082636818.1\|1155_1401_-	hypothetical protein	J9Q751	Salmonella_phage	1.2e-37	93.8
WP_023180886.1\|1543_1759_+	hypothetical protein	J9Q6K7	Salmonella_phage	3.1e-34	98.6
WP_016051705.1\|1769_1988_+	hypothetical protein	J9Q804	Salmonella_phage	4.9e-35	100.0
WP_047722182.1\|2083_2398_+	hypothetical protein	NA	NA	NA	NA
WP_047722183.1\|2474_2786_+	hypothetical protein	J9Q7T7	Salmonella_phage	5.7e-45	90.3
WP_000218787.1\|2914_3307_+	hypothetical protein	J9Q7I1	Salmonella_phage	1.7e-41	65.4
WP_006812528.1\|3427_3715_+	hypothetical protein	J9Q753	Salmonella_phage	1.6e-49	98.9
WP_120714887.1\|3674_3908_+	hypothetical protein	NA	NA	NA	NA
WP_047722184.1\|3920_4403_+	hypothetical protein	J9Q805	Salmonella_phage	2.7e-86	96.2
WP_047722185.1\|5047_5251_-	hypothetical protein	J9Q7I3	Salmonella_phage	5.4e-28	97.0
WP_047722186.1\|5301_5952_-	hypothetical protein	J9Q754	Salmonella_phage	1.2e-113	99.1
WP_073849444.1\|6273_6582_-	hypothetical protein	NA	NA	NA	NA
WP_047722187.1\|6585_7113_-	transcriptional regulator	J9Q6L0	Salmonella_phage	3.5e-79	95.9
WP_000683475.1\|7117_7540_-	hypothetical protein	J9Q806	Salmonella_phage	8.2e-63	85.7
WP_001291547.1\|7599_7878_-	hypothetical protein	J9Q7T9	Salmonella_phage	3.4e-41	98.9
WP_047722188.1\|7880_9440_-	DEAD/DEAH box helicase	J9Q7I4	Salmonella_phage	5.7e-295	99.6
WP_047722189.1\|9504_10206_+	chromosome partitioning protein ParB	J9Q756	Salmonella_phage	6.2e-124	99.1
WP_047722190.1\|10205_10874_+	chromosome partitioning protein ParB	J9Q6L1	Salmonella_phage	5.6e-114	98.6
WP_006812519.1\|10870_11509_+	ATP-binding cassette domain-containing protein	J9Q807	Salmonella_phage	1.1e-111	99.5
WP_047722191.1\|11501_11756_+	hypothetical protein	J9Q7U0	Salmonella_phage	2.6e-40	97.6
WP_002228789.1\|11752_12652_+	hypothetical protein	J9Q7I6	Salmonella_phage	8.2e-169	99.7
WP_000176291.1\|12661_12928_+	hypothetical protein	J9Q757	Salmonella_phage	1.3e-42	100.0
WP_047722192.1\|13123_13765_+	hypothetical protein	J9Q6D4	Salmonella_phage	7.5e-108	98.1
WP_002211787.1\|13767_15024_+\|terminase	terminase	J9Q7Y2	Salmonella_phage	1.8e-251	100.0
WP_047722193.1\|15057_16632_+	hypothetical protein	J9Q7R1	Salmonella_phage	7.1e-301	99.2
WP_047722195.1\|16654_17551_+	hypothetical protein	J9Q7F4	Salmonella_phage	2.3e-147	96.3
WP_040110313.1\|17577_18453_+	hypothetical protein	J9Q710	Salmonella_phage	1.9e-162	99.7
WP_001115046.1\|18527_19451_+	Ig domain-containing protein	J9Q6D6	Salmonella_phage	3.3e-157	100.0
WP_000801184.1\|19494_19929_+	hypothetical protein	J9Q7Y3	Salmonella_phage	2.1e-74	100.0
WP_047722196.1\|19928_20762_+	hypothetical protein	J9Q7R2	Salmonella_phage	1.3e-152	99.6
WP_001027662.1\|20859_21204_+	hypothetical protein	J9Q7F6	Salmonella_phage	1.9e-57	100.0
WP_047722198.1\|21194_21668_+	hypothetical protein	J9Q711	Salmonella_phage	5.7e-81	98.7
WP_000469441.1\|21669_22053_+	hypothetical protein	J9Q6D8	Salmonella_phage	1.7e-67	100.0
WP_006812510.1\|22127_22874_+	Ig domain-containing protein	J9Q7Y4	Salmonella_phage	6.8e-129	98.4
WP_000163862.1\|22933_23251_+	hypothetical protein	J9Q7R3	Salmonella_phage	6.0e-50	98.1
WP_002228782.1\|23331_23601_+	hypothetical protein	J9Q7F7	Salmonella_phage	8.4e-37	100.0
WP_047722199.1\|23608_28192_+	tape measure protein	J9Q712	Salmonella_phage	0.0e+00	92.0
WP_000440566.1\|28233_28569_+\|tail	phage tail protein	J9Q6E1	Salmonella_phage	5.7e-59	97.3
WP_155404702.1\|28625_29360_+\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	3.3e-136	99.1
WP_047722201.1\|29349_30147_+\|tail	tail protein	J9Q7R4	Salmonella_phage	7.0e-156	95.8
WP_001293197.1\|30134_30722_+\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	1.1e-102	92.3
WP_052941152.1\|30736_35125_+	DUF1983 domain-containing protein	J9Q713	Salmonella_phage	0.0e+00	86.8
WP_120714888.1\|35515_38113_+\|tail	tail fiber domain-containing protein	A0A2H4P6K4	Salmonella_phage	1.3e-155	49.5
WP_000064174.1\|38226_38550_+	hypothetical protein	J9Q6E7	Salmonella_phage	2.7e-50	97.2
WP_047722203.1\|38563_39256_+	membrane protein	J9Q7Y7	Salmonella_phage	8.6e-126	95.7
WP_082636819.1\|39324_39669_+	hypothetical protein	J9Q7G2	Salmonella_phage	1.0e-26	82.1
WP_001287064.1\|39719_40271_-	hypothetical protein	A0A2H4J5U3	uncultured_Caudovirales_phage	7.8e-29	39.8
WP_023180946.1\|40601_41267_+	AAA family ATPase	J9Q7R7	Salmonella_phage	1.0e-112	95.0
WP_047722206.1\|41266_41626_+	hypothetical protein	J9Q7G3	Salmonella_phage	1.9e-44	100.0
WP_047722207.1\|41670_42390_+	DUF2971 domain-containing protein	J9Q7Y9	Salmonella_phage	2.9e-44	41.6
WP_052941154.1\|42456_43629_+	hypothetical protein	NA	NA	NA	NA
WP_047722208.1\|43824_44550_+	hypothetical protein	J9Q7R8	Salmonella_phage	1.4e-139	98.8
WP_006812582.1\|44610_45951_+	AAA family ATPase	J9Q7G4	Salmonella_phage	1.3e-247	99.8
WP_082636815.1\|46012_47224_+	DNA primase	J9Q720	Salmonella_phage	5.0e-214	96.8
WP_000209842.1\|47225_48278_-	hypothetical protein	J9Q6F5	Salmonella_phage	1.9e-92	56.7
WP_000642525.1\|48461_49256_+	hypothetical protein	J9Q7Z0	Salmonella_phage	4.9e-141	96.2
WP_047722276.1\|49556_49814_+	hypothetical protein	J9Q7R9	Salmonella_phage	8.9e-36	96.5
WP_047722211.1\|49848_51171_+	DNA ligase	J9Q7G5	Salmonella_phage	2.8e-258	99.3
WP_023180936.1\|51170_51347_+	hypothetical protein	J9Q729	Salmonella_phage	3.1e-24	98.3
WP_011011092.1\|51336_51543_+	hypothetical protein	J9Q6I3	Salmonella_phage	8.1e-32	98.5
WP_000613550.1\|51542_51695_+	hypothetical protein	J9Q7Z1	Salmonella_phage	8.9e-20	98.0
WP_000067984.1\|51691_51997_+	hypothetical protein	J9Q7S1	Salmonella_phage	9.2e-48	98.0

DBSCAN-SWA_2

55815 : 108770

Salmonella_phage(89.66%)

integrase,protease

attL 52566:52583|attR 64722:64739

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
52566:52583	attL	NA	NA	NA	NA
WP_071845140.1\|55815_56649_+	phosphate starvation-inducible protein PhoH	W8D063	Erwinia_phage	1.1e-90	65.5
WP_000159906.1\|56659_56863_+	hypothetical protein	A0A0B6VT64	Edwardsiella_phage	4.4e-06	49.2
WP_000131231.1\|56878_57259_+	hypothetical protein	Q716B1	Shigella_phage	6.7e-40	67.2
WP_047722214.1\|57258_57504_+	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	1.7e-12	45.5
WP_047722215.1\|57531_57759_-	hypothetical protein	NA	NA	NA	NA
WP_050194547.1\|57733_58270_-	hypothetical protein	NA	NA	NA	NA
WP_047722216.1\|58517_59624_+\|integrase	site-specific integrase	A0A1P8DTG6	Proteus_phage	2.1e-25	32.2
WP_000224608.1\|59615_60002_-	transcriptional regulator	NA	NA	NA	NA
WP_004110118.1\|60266_60479_+	hypothetical protein	NA	NA	NA	NA
WP_047722219.1\|60588_62961_+	porphyrin biosynthesis protein	J9Q7G6	Salmonella_phage	0.0e+00	94.1
WP_047722221.1\|63057_64293_+	AAA domain-containing protein	J9Q733	Salmonella_phage	1.9e-237	99.3
WP_047722223.1\|64473_67992_+	DNA polymerase III subunit alpha	J9Q7Z2	Salmonella_phage	0.0e+00	99.2
64722:64739	attR	NA	NA	NA	NA
WP_002213143.1\|67988_68432_+	hypothetical protein	J9Q7S4	Salmonella_phage	7.8e-72	100.0
WP_047722224.1\|68577_69003_+	hypothetical protein	A0A291AWZ9	Escherichia_phage	2.3e-49	63.8
WP_047722225.1\|69013_69313_+	hypothetical protein	NA	NA	NA	NA
WP_047722227.1\|69354_70029_-	hypothetical protein	NA	NA	NA	NA
WP_000102109.1\|70187_70619_+	hypothetical protein	J9Q6I8	Salmonella_phage	4.0e-73	100.0
WP_047722229.1\|70738_71767_+	hypothetical protein	J9Q7Z3	Salmonella_phage	1.6e-165	99.1
WP_047722230.1\|71827_72772_+	exonuclease	J9Q7S6	Salmonella_phage	2.8e-180	99.0
WP_000920226.1\|72771_73038_+	hypothetical protein	J9Q7G8	Salmonella_phage	1.6e-40	100.0
WP_047722232.1\|73040_74117_+	recombinase	J9Q736	Salmonella_phage	2.7e-203	99.4
WP_000589750.1\|74208_74409_+	hypothetical protein	J9Q6J0	Salmonella_phage	9.3e-25	93.9
WP_047722234.1\|74412_75243_+\|protease	serine protease	J9Q7Z4	Salmonella_phage	4.2e-127	98.9
WP_047722235.1\|75405_75777_+	DUF2591 domain-containing protein	J9Q7S7	Salmonella_phage	1.1e-68	97.6
WP_032655922.1\|75760_76171_+	hypothetical protein	J9Q7G9	Salmonella_phage	4.8e-76	98.5
WP_004110038.1\|76239_76515_+	hypothetical protein	J9Q738	Salmonella_phage	4.1e-47	97.8
WP_004110036.1\|76555_76735_+	hypothetical protein	J9Q6J1	Salmonella_phage	7.3e-21	98.3
WP_023180917.1\|76731_77067_+	hypothetical protein	J9Q7Z5	Salmonella_phage	9.1e-57	99.1
WP_006812558.1\|77066_77279_+	hypothetical protein	J9Q7S8	Salmonella_phage	3.1e-34	98.6
WP_155404703.1\|77501_77642_+	hypothetical protein	NA	NA	NA	NA
WP_047722236.1\|77847_78912_-	replication protein RepA	J9Q7H0	Salmonella_phage	4.0e-183	96.6
WP_047722237.1\|79656_80301_+	hypothetical protein	J9Q739	Salmonella_phage	1.4e-122	98.1
WP_047722238.1\|80376_80871_+	GNAT family N-acetyltransferase	J9Q6J3	Salmonella_phage	7.3e-87	95.1
WP_047722239.1\|81047_82133_+	exonuclease SbcCD subunit D	J9Q7S9	Salmonella_phage	2.0e-206	98.6
WP_000107766.1\|82129_82366_+	hypothetical protein	J9Q7H1	Salmonella_phage	1.1e-29	98.4
WP_047722240.1\|82362_84279_+	AAA family ATPase	J9Q741	Salmonella_phage	0.0e+00	98.4
WP_047722241.1\|84268_85015_+	hypothetical protein	J9Q6J5	Salmonella_phage	8.4e-135	97.2
WP_002214145.1\|85026_85596_+	hypothetical protein	J9Q7Z7	Salmonella_phage	5.8e-104	100.0
WP_004110010.1\|85673_87989_+	ribonucleoside-diphosphate reductase subunit alpha	J9Q7T0	Salmonella_phage	0.0e+00	99.6
WP_040110278.1\|88096_89239_+	ribonucleotide-diphosphate reductase subunit beta	J9Q7H3	Salmonella_phage	2.9e-219	99.7
WP_047722242.1\|89321_90191_+	phosphoribosyl-ATP pyrophosphohydrolase family protein	J9Q742	Salmonella_phage	7.2e-162	99.7
WP_082636817.1\|90368_91484_+	thymidylate synthase	J9Q6J6	Salmonella_phage	2.0e-217	98.1
WP_047722244.1\|91485_91899_+	hypothetical protein	J9Q7Z8	Salmonella_phage	1.2e-71	98.5
WP_047722245.1\|91895_92372_+	dihydrofolate reductase	J9Q7T1	Salmonella_phage	2.0e-89	98.1
WP_047722246.1\|92371_93016_+	AAA family ATPase	J9Q7H4	Salmonella_phage	1.2e-116	99.5
WP_047722248.1\|93079_93499_+	hypothetical protein	J9Q743	Salmonella_phage	2.4e-67	97.1
WP_047722249.1\|93508_94051_+	3'-5' exonuclease	J9Q6J8	Salmonella_phage	5.0e-97	97.8
WP_047722250.1\|94089_95196_-	DUF697 domain-containing protein	NA	NA	NA	NA
WP_080964707.1\|95323_96250_+	hypothetical protein	J9Q7Z9	Salmonella_phage	9.5e-104	91.8
WP_047722252.1\|96435_97029_+	phage N-6-adenine-methyltransferase	J9Q7T2	Salmonella_phage	2.3e-111	99.0
WP_047722253.1\|97232_97463_+	hypothetical protein	J9Q7H5	Salmonella_phage	2.3e-35	97.4
WP_004197483.1\|98280_98601_-	hypothetical protein	NA	NA	NA	NA
WP_052941155.1\|98885_99488_-	hypothetical protein	NA	NA	NA	NA
WP_047722255.1\|99882_100377_+	hypothetical protein	J9Q6J9	Salmonella_phage	2.1e-81	98.2
WP_047722256.1\|100386_100575_+	hypothetical protein	J9Q800	Salmonella_phage	3.6e-26	98.4
WP_080201286.1\|100740_101499_+	hypothetical protein	J9Q7T3	Salmonella_phage	7.9e-133	99.2
WP_047722259.1\|101607_102180_+	hypothetical protein	J9Q7H6	Salmonella_phage	4.8e-98	99.5
WP_047722260.1\|102321_104007_+	DUF4942 domain-containing protein	J9Q747	Salmonella_phage	0.0e+00	98.9
WP_047722261.1\|104065_104755_+	hypothetical protein	J9Q6K2	Salmonella_phage	1.7e-121	96.5
WP_006812541.1\|104751_105033_+	hypothetical protein	J9Q801	Salmonella_phage	6.5e-48	100.0
WP_047722262.1\|105035_105407_+	hypothetical protein	J9Q7T4	Salmonella_phage	1.6e-62	99.2
WP_000086990.1\|105498_106140_+	HD domain-containing protein	J9Q7H7	Salmonella_phage	9.7e-116	100.0
WP_047722263.1\|106136_106688_+	hypothetical protein	J9Q748	Salmonella_phage	3.9e-97	92.3
WP_047722264.1\|106726_107416_+	DUF1311 domain-containing protein	J9Q6K3	Salmonella_phage	8.6e-110	87.9
WP_006812537.1\|107471_107675_-	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	6.8e-31	97.0
WP_047722265.1\|107864_108131_+	hypothetical protein	J9Q7T5	Salmonella_phage	4.0e-31	70.5
WP_047722266.1\|108216_108453_+	hypothetical protein	J9Q7H8	Salmonella_phage	9.3e-40	97.4
WP_052941156.1\|108452_108770_+	hypothetical protein	J9Q750	Salmonella_phage	3.6e-47	81.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011654

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP011656

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP011657

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP011655

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection