CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP012325	Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 strain JCM 1194	4 crisprs	c2c9_V-U4,cas3,csa3,DEDDh,WYL,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	0	12	1	0

1. NZ_AP012325

CRISPR-Cas detection and classification

Crispr_ID: NZ_AP012325_1

• CRISPR_ID: NZ_AP012325_1
• CRISPR_location: 10754-10856
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_AP012325_1

Consensus_repeat	Method
AACAGCCCTGTGGGCTGTTAATGGCAGCGAGCAGCG	CRISPRCasFinder

spacers of NZ_AP012325_1

>1.1|10790|31|NZ_AP012325|CRISPRCasFinder
ATAGCGTCGCGAGCGTCGCATGTGATGCTGG

CRISPR arrays and Neighbor proteins around NZ_AP012325_1

CRISPR arrays

The CRISPR arrays of NZ_AP012325_1

>merge|NZ_AP012325|1|10754-10856|CRISPRCasFinder
AACAGCCCTGTGGGCTGTTAATGGCAGCGAGCAGCGATAGCGTCGCGAGCGTCGCATGTGATGCTGGAACAGCCCTGTGGGCTGTTAATAGCAGCGAGCAGCG

>NZ_AP012325|1|1|10754-10856|CRISPRCasFinder
AACAGCCCTGTGGGCTGTTAATGGCAGCGAGCAGCG	ATAGCGTCGCGAGCGTCGCATGTGATGCTGG
AACAGCCCTGTGGGCTGTTAATAGCAGCGAGCAGCG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP012325.1|WP_003833564.1|15810_17142_-|HlyC/CorC-family-transporter	unknown	unknown	gnl|CDD|224173
NZ_AP012325.1|WP_003833547.1|7455_10140_+|DNA-gyrase-subunit-A	unknown	unknown	gnl|CDD|235502
NZ_AP012325.1|WP_033513127.1|2036_3161_+|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl|CDD|236089
NZ_AP012325.1|WP_003833546.1|5284_7402_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	unknown	unknown	gnl|CDD|235542
NZ_AP012325.1|WP_003833544.1|4527_5013_+|DUF721-domain-containing-protein	unknown	unknown	gnl|CDD|377496
NZ_AP012325.1|WP_003833562.1|14651_15635_+|L-lactate-dehydrogenase	unknown	unknown	gnl|CDD|133427
NZ_AP012325.1|WP_003833554.1|11126_12473_-|NADP-specific-glutamate-dehydrogenase	unknown	unknown	gnl|CDD|181834
NZ_AP012325.1|WP_033512833.1|25215_26316_-|tryptophan--tRNA-ligase	unknown	unknown	gnl|CDD|234866
NZ_AP012325.1|WP_003833534.1|0_1476_+|chromosomal-replication-initiator-protein-DnaA	unknown	unknown	gnl|CDD|234667
NZ_AP012325.1|WP_003833568.1|18309_21066_-|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl|CDD|366019
NZ_AP012325.1|WP_003833577.1|23464_25093_+|sodium/proline-symporter	unknown	unknown	gnl|CDD|271369
NZ_AP012325.1|WP_003833565.1|17290_17986_-|carbonate-dehydratase	unknown	unknown	gnl|CDD|239473
NZ_AP012325.1|WP_033513124.1|12714_13158_+|MscL-family-protein	unknown	unknown	gnl|CDD|376605
NZ_AP012325.1|WP_003833543.1|3325_4528_+|DNA-replication/repair-protein-RecF	unknown	unknown	gnl|CDD|224116
NZ_AP012325.1|WP_003833558.1|13819_14386_+|M48-family-metallopeptidase	unknown	unknown	gnl|CDD|307807
NZ_AP012325.1|WP_033512831.1|21326_23156_+|threonine/serine-exporter-family-protein	unknown	unknown	gnl|CDD|377697

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_AP012325.1|WP_003833564.1|15810_17142_-|HlyC/CorC-family-transporter	gnl|CDD|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	3.45158e-113
NZ_AP012325.1|WP_003833547.1|7455_10140_+|DNA-gyrase-subunit-A	gnl|CDD|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NZ_AP012325.1|WP_033513127.1|2036_3161_+|DNA-polymerase-III-subunit-beta	gnl|CDD|236089	PRK07761, PRK07761, DNA polymerase III subunit beta; Validated.	0
NZ_AP012325.1|WP_003833546.1|5284_7402_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	gnl|CDD|235542	PRK05644, gyrB, DNA gyrase subunit B; Validated.	0
NZ_AP012325.1|WP_003833544.1|4527_5013_+|DUF721-domain-containing-protein	gnl|CDD|377496	pfam05258, DUF721, Protein of unknown function (DUF721). This family contains several actinomycete proteins of unknown function.	3.95869e-22
NZ_AP012325.1|WP_003833562.1|14651_15635_+|L-lactate-dehydrogenase	gnl|CDD|133427	cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	1.23424e-151
NZ_AP012325.1|WP_003833554.1|11126_12473_-|NADP-specific-glutamate-dehydrogenase	gnl|CDD|181834	PRK09414, PRK09414, NADP-specific glutamate dehydrogenase.	0
NZ_AP012325.1|WP_033512833.1|25215_26316_-|tryptophan--tRNA-ligase	gnl|CDD|234866	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.	8.07141e-114
NZ_AP012325.1|WP_003833534.1|0_1476_+|chromosomal-replication-initiator-protein-DnaA	gnl|CDD|234667	PRK00149, dnaA, chromosomal replication initiator protein DnaA.	0
NZ_AP012325.1|WP_003833568.1|18309_21066_-|phosphoenolpyruvate-carboxylase	gnl|CDD|366019	pfam00311, PEPcase, Phosphoenolpyruvate carboxylase.	0
NZ_AP012325.1|WP_003833577.1|23464_25093_+|sodium/proline-symporter	gnl|CDD|271369	cd11475, SLC5sbd_PutP, Na(+)/proline cotransporter PutP and related proteins; solute binding domain. Escherichia coli PutP catalyzes the Na+-coupled uptake of proline with a stoichiometry of 1:1. The putP gene is part of the put operon; this operon in addition encodes a proline dehydrogenase, allowing the use of proline as a source of nitrogen and/or carbon. This subfamily also includes the Bacillus subtilis Na+/proline cotransporter (OpuE) which has an osmoprotective instead of catabolic role. Expression of the opuE gene is under osmotic control and different sigma factors contribute to its regulation; it is also a putative CcpA-activated gene. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	1.22661e-178
NZ_AP012325.1|WP_003833565.1|17290_17986_-|carbonate-dehydratase	gnl|CDD|239473	cd03378, beta_CA_cladeC, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	1.85747e-50
NZ_AP012325.1|WP_033513124.1|12714_13158_+|MscL-family-protein	gnl|CDD|376605	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL.	7.18254e-38
NZ_AP012325.1|WP_003833543.1|3325_4528_+|DNA-replication/repair-protein-RecF	gnl|CDD|224116	COG1195, RecF, Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair].	9.55687e-100
NZ_AP012325.1|WP_003833558.1|13819_14386_+|M48-family-metallopeptidase	gnl|CDD|307807	pfam01863, DUF45, Protein of unknown function DUF45. This protein has no known function. Members are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C-terminus being the most conserved region, containing three conserved histidines. This motif is similar to that found in Zinc proteases, suggesting that this family may also be proteases.	5.51579e-43
NZ_AP012325.1|WP_033512831.1|21326_23156_+|threonine/serine-exporter-family-protein	gnl|CDD|377697	pfam06738, ThrE, Putative threonine/serine exporter. ThrE is a family of bacterial and Archaeal proteins that catalyze the export of L-threonine from the cell. UniProtKB:Q79VD1 has been characterized as being necessary for this export. The domain exhibits 10 putative TMs and catalyzes the proton-motive-force-dependent efflux of threonine and serine.	2.61278e-37

Protein sequences

>NZ_AP012325.1|WP_003833547.1|7455_10140_+|DNA-gyrase-subunit-A
MADENNSNEDGQFVPDGSMEPLSPQEADNTDYGLMVGERIQKKDLQQEMRDSYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYSKCARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPAAAMRYTECRMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNIPPHNMREVAEGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLITMRAVVNTEEIKGRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVGHQLEVIARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAEVARTGLMDLLDVDEVQADAILAMQLRRLAALERQKILDEHNELMRRIADYNDILAKPERQRKIVGDELDEIVSKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFIKRTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGSRDSKGQHVANLLQFGPDETIQTVLSIPNYEVAKYLVLATRSGKVKKTALAEYDSPRQGGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQANDEQLRPMGRQTAGVQGMKFREGDELLDMDVVWGDSDKDLFVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEGRGSLVGAVIVEEDDQIMAIMKSGKVIRSNVDEVKRTGRTTQGVTFAKPDKNDEIISIARNEEKDDDESAENATVNEDTAQSSESAVEAPAETNAESGDGENVEA
>NZ_AP012325.1|WP_003833546.1|5284_7402_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B
MQEGISVADLDADSLNESAENTQEDQIQNDQLEDAQLDDTLAPEHYDASDLRVLEGLEAVRIRPGMYIGSTGPRGLHHLVYEIVDNSVDEALAGYASHIEVTILPDGGVRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQTYINQKPTSRLLKGEPMGEDESTGTSVTFWADGAIFETTTYDFEILRNRFQQMAFLNKGLKLSLTDLREPDQAGDEVAGDGDDNAEPKHQTVTYQYNDGIKDYVDYLVKSRKATPIEPDVIDFEAEDLKIGISAEIAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYAREKNILKDKDENLSGDDVREGLTAVVSVKLTTPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFDSHPSEAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSNNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSETIESLITAVGGGYGEDFDLNKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWTKGAHDFVYTDAERDRVLAEGKAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPDHRILKQVQIEDAAAADETFSMLMGDEVEPRRLFIQRNARNVSWIDA
>NZ_AP012325.1|WP_003833544.1|4527_5013_+|DUF721-domain-containing-protein
MPNPPICETLHLDQRKLPAEVFERISKRAGRYKEREECARQAWENFGKPGRDPQTVGNIFNVIATQGLWTPHLKIAQMQNHWNQVVGDENARHSYPVDLRDGILTIRCDSPAWTTTLTYMIPLLTDTIRRRLEGLTINEVRVTGPQQQGFSRGRMTRRTRY
>NZ_AP012325.1|WP_003833543.1|3325_4528_+|DNA-replication/repair-protein-RecF
MYISRLALDHYRSWEHCVLDFEPGINILQGANGLGKTNIVEAVEVLSTGSSHRTSSSLPLIEKGCTSATIRANVEDDETQHTYEATIVARGANRARIDGGKSQYMRDLIGRTPSVSFTPEDQRLVAGDPATRRNFINQAASLLLPHYAQLLQQFTHVAKQRTALLKQLGDGTNLDPQYSQQTVLSGLEIWTGQFIDLGMRLTRERNDVIARLGEPFARIYASLAGDDERAALSYEPSFDEVMLFDDPSAEISRHFQRIYPGEVARGQNLIGPHRDDLTLLLNDMPAREFASNGEMWTMALALKMALYEAVSAQFESKPIVILDDVFAQLDESRRGQILDFAMRQDQVLITVAAASDIPQTDAVHAHVIDVAALRRQSQDGGDDDLAAMMAQLAAGRETDR
>NZ_AP012325.1|WP_033513127.1|2036_3161_+|DNA-polymerase-III-subunit-beta
MKVEVNSQALADAVAWTTRVIDARPASPILAGVRLEAIDGTLQLSAFNYAISARHHIEAGVDEAGSVLVLGKLLADITKSLPAAKTYLSTDGSTMTITSGKSTFTMQLMPDAEYPDLPVIPSKLGQVDAQTFTQAVTQASVAVSREENRPVLTGIRVQFQGDKVIMSSTDRFRLSRSSFTWTPENPDTNATALVRGALLRDVARSLDEHQNIVVDFDTENPSLLGFENAGRVSTSQLIDGEFPAVDRLYADEYPIHAVINKQDLISAIKRVSLVAERNAPIRMAFTSQELTLTAGTADEAQAKEILDIDMDGEDITVAFNPTYLIEGLSAIAEPFVRMKMTTAVKPVEFNGQQESDSEESMDYRYLLVPMRFNS
>NZ_AP012325.1|WP_003833534.1|0_1476_+|chromosomal-replication-initiator-protein-DnaA
MADTTTDPLDQARGVWSDALALLHQNPALSVRDKSWLENVFPEGMWGPTIVLCVPSAAAQQTLQNELNQPLLEALRESAEQDIFPAFKIAEKKEPAQPPVEEYPHFTPAPHVEETTQGQLPIPVAMPPERPNTFQRGQNRPLLDPKTHLNKNATFDTFVPGDSNRFARTVALAVAEGSGHDFNPLCIYGGSGLGKTHLLNAIGNYALVKDPSLKVRYVTSEEFTNEFIEALGDTNQNSGQIKEFNRRYREVDVLLIDDIQFLSGKDATLEQFFHTFNTLHQANKRIVIASDVPPKDLQGFNERLISRFESGLTVDVKPPDLETRIAILRMIAHESNVQDDVLNLIAERFTENIRELEGALNRVTAMASLSGQPVTRALAEHTLQDFFATDVEIKPTDIITQVAKYFYITFDDIVGRSRTKKIALARQIAMYLVRELTSMSLNDIGQVFGGKDHTTVMHAYTRISDEMQEKQEIYNYVTELTLQLKQRSGEK
>NZ_AP012325.1|WP_003833554.1|11126_12473_-|NADP-specific-glutamate-dehydrogenase
MLTDEYVKRVYAQVEKRDGDQPEFLQAVREVFESLEPVVAKHPEYEKAGVLERIVEPERVVKFRVAWTDDEGKVQVNRGYRIQFNSAIGPYKGGLRFHPSVNEGVIKFLGFEQILKNSLTSLPMGGGKGGSDFDPKGKSDAEVMRFCQAFMTELCRHIGQFTDVPAGDINVGGREIGYLFGQYKRIRDEYSGVLTGKGLEFGGSLARTEATGYGLCYYTAEAMRVLRNDSFEGKTVVISGSGNVAIFATEKAQALGAKVVTASDSNGYIYDPNGIQLDVVKDIKLGHRGRIKEYAERVPGSEYHEGCKGVWTVPCDIALPCATQNEIDEESAKALVANGCTVVCEGANMPSTPEAIAVYQSNNVLYGPAKAANAGGVAVSGLEMSQNSYRLSWTFEEVDGKLKSIMENIVANSLEAAKEYGHEGDLMLGANAAGFVKVANAMVAQGVL
>NZ_AP012325.1|WP_033513124.1|12714_13158_+|MscL-family-protein
MIEGFKKFIARGNMIDMAVGVVMGGAVTTVVNSIVNNVINPFIAMIFGKPNMDGLLAITFNNATVSFGAVLGAILNFLIIAAAVYFCILVPINKFRDVTEALLAKTKLAEERSKAEEEAIKEPEISTEEQTILLLQQIRDELAKRNA
>NZ_AP012325.1|WP_003833558.1|13819_14386_+|M48-family-metallopeptidase
MTVTIMRKPIKNMYLRIKPPNAQIVISTPSRMSQAAIARFVTERKSWIEQAQRAMLQARDQQIHEGNNPNDPHSFTWNDATRKRAVQTINAQLPVLLAKWSPIIGREPTHVTLRVMTSRWGSCTPKTGRIRLNLQLGLMDPRFLEYVLVHEMTHLWENGHGEGFQRRMSAYLPQWRQLRRELNRHVVL
>NZ_AP012325.1|WP_003833562.1|14651_15635_+|L-lactate-dehydrogenase
MAVLRKVGIIGIGHVGAHVANAVLSAGLAEELKLCDINEQKVVSECQDLSDTLSFYPHNCVIGNYGTQYEQLADCDVVINAAGDVKTSAKDRDGELFVTTDIARTWISRLFNAGFHGVIITISNPCDVVATEIWHITGYDPRKIIGTGTALDSARLRNAIAKRVNVDQKSIGAYMLGEHGNSQFAYWSNVNIAGKPLTQLAQDNPQRFTLDEDETEQDARRGGYRVYAGKGCTEYAIAATAARLTQAVLCDEHYAAACSTLLTGEQGESGNYASLPCIVGANGVEEVLNPTLTESEQAKFHASCEHIRANIAQLAWWNDECHPTLRS
>NZ_AP012325.1|WP_003833564.1|15810_17142_-|HlyC/CorC-family-transporter
MSLGLNILLIFIFLLLGSVFAGTELALVSLRGSQIDQMEQEDARGKRVAQIARDPNTFLSTVQIGVTLSGFLSASFGESSISPYIVPIVESWGVPTSVAAPLTTIVLTLIISYCSIVISELVPKRIAMQRNEQIARSVVPAIHVFAKVCKPIIWLIGKNTNIIVRLLGFDPNETDSEVSDEELRVLVNTNTNLSKDERTILDDVFDASETIVAEVMRPRADVVFLDGAMPIGDAAAYVREMPYSRYPVTGKDFDDVLGFVHVRDLLDIRNPEAKTVADVTREGISLPGTSKLLPSLELLRKRGIHLAVVIDEYGGTDGIVTLEDMTEELVGDIRDEYDLPEEKGGERTERTAFVNGVATIEGGMTIEDFADLTGIELEDGPYETVAGYFLAHTGKMGEVGDTLPSDDGYDMTVTQVDGRRIETLEIRKHMVDGDNAKSAKTAK
>NZ_AP012325.1|WP_003833565.1|17290_17986_-|carbonate-dehydratase
MADELFVDQDEVEGTASGVWSRMLAGNRRFAEGKPEHPNRGAEAREALVDTHAPEAAMLSCSDARVSPDIIFDSGLGDLFTVRTAGQIIDEAVIASLEYAVTVLGVRLLVVLGHQNCGAIKQVSKDYEALLHELTADAEDSLMAADSISDIDERICDSDSIMMRTVGFSIWQAHESELESSEDFERVHIARTIELLVEQSEAIQQALAADKLMIVGARYQLDSGKVEVLSF
>NZ_AP012325.1|WP_003833568.1|18309_21066_-|phosphoenolpyruvate-carboxylase
MTTENEQITPADAAIVSSGTGTKGPEERDLPASLKEEMDLCLQILREVLGEFDEKLLDKFDEVREHALNASAKRFSGILTDTNPNQDDLQKVVDIIDKTDVHEAQLLARAFTTYFHLANLCEENYRVSVLHSREAAVDDTQAVDPVNEMTCAYHQLINEMGPAKAKELLDKLEFHPVFTAHPTEARRKAVEGKIRRISQLLATHKLLGGSDKKENSRRLFNEIDALFRTSPIALKKPTPVEESETILDIFDNTLFYTIPQVYRRFDDWVLGDKAGLVPPVCPAFFHPGSWIGSDRDGNPNVTAKVSRQVARKFSDHVLGALEIETRRVGKNLTMEAETTPPSAELKSLWNHQKEMSERLTDKAALISTKELHRAVMLVMADRLKATIDRDADLMYHSCEDYIADLKVVQRSLAEANAKRSAYGPLQDLIWQAETFGFHMVEMEFRQHSVVHSRALEDIREHGLHGERGELQPMTHEVLDTFRALGSIQKRNGIKAARRYIISFTKSAQNIKDVYELNRLAFSHPKDVPTIDVIPLFEQLEDLQNSVDVLEEMIKIPEVQARLKATGGKMEVMLGYSDSSKDAGPTSATLALHSAQERIAKWAESHDIDLTLFHGRGGAVGRGGGPANRAVLAQPVGSVKCRFKLTEQGEVIFARYGNPALAIRHVESVAAATLLQSAPSVEKRNTDMTAKYADMASKLDEAAHNRFLDLLNTDGFAPWFSTVTPLTEIGLLPIGSRPAKRGLGAKSLDDLRTIPWIFSWAQARINLAAWYGLGTACEQFGDLNTLRQAYEEWPLFSTFIDNIEMSLAKTDERIAKMYLALGDREDLNKKVLDEMELTRKWVLEIVGDKWPLQHRHVLGQAIRIRSPYVDALSATQVLALGSLRKRVDKEELTHGQKENYTYLILCTVSGVAAGLQNTG
>NZ_AP012325.1|WP_033512831.1|21326_23156_+|threonine/serine-exporter-family-protein
MSAQYEHEHETNFDSAEKSASAVSKFHTHSIPLDMEDIERDWDKPVAEAGIAAKASVIVRVGMLDLGAGTGSFRVREMMHRIAYPLGVHVRADVNLTDIEASCTDGKDRITEVVDLPTTGVNTERIWLLEHFADWFNVNLGKGSMYHSQSDVSEGLMQHLDKRDASQVSADLSKRLRERQKAEQNQEGSDDPVLDALEMVTERAEATDTIAQPLHLRDIEAASEQHNRSERETKRETASAANVASSEATTKKTRKNRNHKPPKGQYAEHFDHVGKEKNQTQGITVRQAHERLNMIERRKPLYSPAFAGFASACACASFVFLLGGGPFDMIGAFIGAGLGHWLRRRLFAHHLNQFFVTFVCVAVAALACTGTLRLIGIFEPVALQHDTAYIGAMLFVIPGFPLITGGLDMAKIDFPSGIQRIAYVLCIILMATLAGWMVASIVHLNPQGFEPLGLNPVINCLLRMVFAFIGVWGFSVMFNSPQRMCLVAATIGLITDTLRLEIVDMGVPAEAGAFIGALLAGLLASAWRSAVRRGWLAPHLGYPRICLTVPSIVIMVPGLYMYQAMFHLGQFDTLNALDWAFRAFMVIICLPIGLAMARVITDKSWRYDI
>NZ_AP012325.1|WP_003833577.1|23464_25093_+|sodium/proline-symporter
MITKDFWVLLAMVIYFVAMLTIGFIYSKRSNSSTRQYFAGGRGVGPWLTALSAEASDMSGWLLMGLPGVAYFTGAADPLWTALGLALGTYLNWKLVARRLRRYSVVAGDAITIPDFFSKRFHDKRNIVSTIAALIILVFFCVYVGSCFVTVGKLFSTLFGWDYHLTMVIGAAIVFAYTLIGGYLSVVVTDFIQGLLMFFALAVVFIGSIASVGGVDNTVAFLKGIPGFLDGTQMATPILNDAGEQIIKAGQAMFGAPTEYGVITMISMLAWGLGYFGMPQVLVRFLSIRSSEEIKKSRIIATTWCVVSLTCGVCIGLVGRAMMPTQFVTQSAAENIFIVVSQALLPSFMCGIVVSGIFAASMSSSSSYLIIGASAVGENIFRGLLYRKATDRQVMMVARITLLVMFIFGIVVAFDQNSSIFQVVSYAWAGLGASFGPLMLCSLYWRRTNKFGAIAGMLSGTATVLIWHNLIKPLGGVFAIYELLPAFIISLLFIVVVSLLTPAPDAEVLHEFDHYLDDPDDRKVDDDLVAAEIASGEKRAQI
>NZ_AP012325.1|WP_033512833.1|25215_26316_-|tryptophan--tRNA-ligase
MTDETQEQQITAVGNEMSASFLAAKKRSDATLAAIEQNPGKFTMLTGDRPTGRLHLGHYFGSIRERVAMQNRGVNSNIIIADYQVITDRDTTEHIEDNVLNLVLDYMAAGIDPEKTMIFTHSAVPAENQLMLPFLSLVTEAELHRNPTVKSEMEASGHALTGLLLTYPVHQACDILFCKANVVPIGKDNLPHVEITRTIARRFNERYAKKHPVFPEPAAILSEAPEIPGLDGRKMSKSYGNSIMLGATAQETAKLIKKSPTDSERRITFDPIGRPQVSALLTTAGLVTGRDPKEIAEEIGDSGAGALKAYVIESVNSFLEPHRARREELAKDMDYVRDVLAEGNKKANAIANETLEQVREAMGMRY

Crispr_ID: NZ_AP012325_2

• CRISPR_ID: NZ_AP012325_2
• CRISPR_location: 322704-322894
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_AP012325_2

Consensus_repeat	Method
CGTGATTATGATGATCGTCCGCGTCGTCGTCGTTCCGATCGCGA	CRISPRCasFinder

spacers of NZ_AP012325_2

>2.1|322748|103|NZ_AP012325|CRISPRCasFinder
TGATGACCGTGATTATGATGATCGTCCGCGTCGTCGTCGTTCCGATCGCGACGATCGTGATCGTGATTACGATCGTGATGACCGTCGTTCCGACCGTGACGAT

CRISPR arrays and Neighbor proteins around NZ_AP012325_2

CRISPR arrays

The CRISPR arrays of NZ_AP012325_2

>merge|NZ_AP012325|2|322704-322894|CRISPRCasFinder
CGTGATTATGATGATCGTCCGCGTCGTCGTCGTTCCGATCGCGATGATGACCGTGATTATGATGATCGTCCGCGTCGTCGTCGTTCCGATCGCGACGATCGTGATCGTGATTACGATCGTGATGACCGTCGTTCCGACCGTGACGATCGTGATTATGATGATCGTCCGCGTCGTCGTCGTTCCGATCGCGA

>NZ_AP012325|2|2|322704-322894|CRISPRCasFinder
CGTGATTATGATGATCGTCCGCGTCGTCGTCGTTCCGATCGCGA	TGATGACCGTGATTATGATGATCGTCCGCGTCGTCGTCGTTCCGATCGCGACGATCGTGATCGTGATTACGATCGTGATGACCGTCGTTCCGACCGTGACGAT
CGTGATTATGATGATCGTCCGCGTCGTCGTCGTTCCGATCGCGA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP012325.1|WP_033512606.1|327259_328798_+|U32-family-peptidase	unknown	unknown	gnl|CDD|223896
NZ_AP012325.1|WP_003836103.1|316954_318772_+|alpha-amylase-family-protein	unknown	unknown	gnl|CDD|200463
NZ_AP012325.1|WP_003836082.1|334680_335814_+|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl|CDD|236435
NZ_AP012325.1|WP_003836108.1|306645_315978_+|type-I-polyketide-synthase	unknown	unknown	gnl|CDD|227315
NZ_AP012325.1|WP_003836096.1|323912_326126_+|DUF2207-domain-containing-protein	unknown	unknown	gnl|CDD|378333
NZ_AP012325.1|WP_003836087.1|330854_331544_+|pyroglutamyl-peptidase-I	unknown	unknown	gnl|CDD|238279
NZ_AP012325.1|WP_047750562.1|331692_333171_+|cell-division-protein	unknown	unknown	gnl|CDD|173412
NZ_AP012325.1|WP_003836110.1|302970_304866_+|ATP-grasp-domain-containing-protein	unknown	unknown	gnl|CDD|227111
NZ_AP012325.1|WP_003836090.1|328881_329898_+|laccase-domain-containing-protein	unknown	unknown	gnl|CDD|376831
NZ_AP012325.1|WP_033512602.1|302147_302729_-|biotin-transporter-BioY	unknown	unknown	gnl|CDD|376871
NZ_AP012325.1|WP_003836109.1|304865_306548_+|acyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl|CDD|227136
NZ_AP012325.1|WP_003836084.1|333163_334504_+|C1-family-peptidase	unknown	unknown	gnl|CDD|238328
NZ_AP012325.1|WP_003836089.1|329985_330813_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl|CDD|133009
NZ_AP012325.1|WP_003836106.1|316298_316757_+|holo-ACP-synthase	unknown	unknown	gnl|CDD|234610
NZ_AP012325.1|WP_003836102.1|319085_319760_+|hypothetical-protein	unknown	unknown	unknown
NZ_AP012325.1|WP_033512626.1|301195_302122_+|biotin--[acetyl-CoA-carboxylase]-ligase	unknown	unknown	gnl|CDD|223417
NZ_AP012325.1|WP_033512604.1|326232_327096_+|aldo/keto-reductase	unknown	unknown	gnl|CDD|381314
NZ_AP012325.1|WP_003836099.1|323254_323815_+|LemA-family-protein	unknown	unknown	gnl|CDD|377192
NZ_AP012325.1|WP_003807806.1|319892_320162_+|30S-ribosomal-protein-S15	unknown	unknown	gnl|CDD|180170
NZ_AP012325.1|WP_003836118.1|299031_301131_+|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_AP012325.1|WP_033512606.1|327259_328798_+|U32-family-peptidase	gnl|CDD|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	6.2071e-114
NZ_AP012325.1|WP_003836103.1|316954_318772_+|alpha-amylase-family-protein	gnl|CDD|200463	cd11324, AmyAc_Amylosucrase, Alpha amylase catalytic domain found in Amylosucrase. Amylosucrase is a glucosyltransferase that catalyzes the transfer of a D-glucopyranosyl moiety from sucrose onto an acceptor molecule. When the acceptor is another saccharide, only alpha-1,4 linkages are produced. Unlike most amylopolysaccharide synthases, it does not require any alpha-D-glucosyl nucleoside diphosphate substrate. In the presence of glycogen it catalyzes the transfer of a D-glucose moiety onto a glycogen branch, but in its absence, it hydrolyzes sucrose and synthesizes polymers, smaller maltosaccharides, and sucrose isoforms. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_AP012325.1|WP_003836096.1|323912_326126_+|DUF2207-domain-containing-protein	gnl|CDD|378333	pfam09972, DUF2207, Predicted membrane protein (DUF2207). This domain, found in various hypothetical bacterial proteins, has no known function.	3.04856e-77
NZ_AP012325.1|WP_003836087.1|330854_331544_+|pyroglutamyl-peptidase-I	gnl|CDD|238279	cd00501, Peptidase_C15, Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.	5.29955e-50
NZ_AP012325.1|WP_047750562.1|331692_333171_+|cell-division-protein	gnl|CDD|173412	PTZ00121, PTZ00121, MAEBL; Provisional.	3.12183e-06
NZ_AP012325.1|WP_003836110.1|302970_304866_+|ATP-grasp-domain-containing-protein	gnl|CDD|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
NZ_AP012325.1|WP_003836090.1|328881_329898_+|laccase-domain-containing-protein	gnl|CDD|376831	pfam02578, Cu-oxidase_4, Multi-copper polyphenol oxidoreductase laccase. Laccases are multi-copper oxidoreductases able to oxidize a wide variety of phenolic and non-phenolic compounds and are widely distributed among both prokaryotes and eukaryotes. There are two main active catalytic sites with conserved histidines that are capable of binding four copper atoms.	2.67238e-63
NZ_AP012325.1|WP_033512602.1|302147_302729_-|biotin-transporter-BioY	gnl|CDD|376871	pfam02632, BioY, BioY family. A number of bacterial genes are involved in bioconversion of pimelate into dethiobiotin. BioY is a component of the BioMNY transport system involved in biotin uptake in prokaryotes.	2.61855e-28
NZ_AP012325.1|WP_003836109.1|304865_306548_+|acyl-CoA-carboxylase-subunit-beta	gnl|CDD|227136	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism].	0
NZ_AP012325.1|WP_003836084.1|333163_334504_+|C1-family-peptidase	gnl|CDD|238328	cd00585, Peptidase_C1B, Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure with the active sites imbedded in the central channel. The bacterial homolog of BH, called pepC, is a cysteine aminopeptidase possessing broad specificity. Although its crystal structure has not been solved, biochemical analysis shows that pepC also forms a hexamer. .	0
NZ_AP012325.1|WP_003836089.1|329985_330813_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl|CDD|133009	cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.	6.82098e-70
NZ_AP012325.1|WP_003836106.1|316298_316757_+|holo-ACP-synthase	gnl|CDD|234610	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional.	9.95349e-25
NZ_AP012325.1|WP_033512604.1|326232_327096_+|aldo/keto-reductase	gnl|CDD|381314	cd19088, AKR_AKR13B1, AKR13B family of aldo-keto reductase (AKR). Xylella fastidiosa phenylacetaldehyde dehydrogenase is a founding member of aldo-keto reductase family 13 member B1 (AKR13B1). phenylacetaldehyde dehydrogenase (EC 1.2.1.39) catalyzes the NAD+-dependent oxidation of phenylactealdehyde to phenylacetic acid.	2.50462e-86
NZ_AP012325.1|WP_033512626.1|301195_302122_+|biotin--[acetyl-CoA-carboxylase]-ligase	gnl|CDD|223417	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism].	9.77107e-37
NZ_AP012325.1|WP_003836082.1|334680_335814_+|3-deoxy-7-phosphoheptulonate-synthase	gnl|CDD|236435	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated.	0
NZ_AP012325.1|WP_003836099.1|323254_323815_+|LemA-family-protein	gnl|CDD|377192	pfam04011, LemA, LemA family. The members of this family are related to the LemA protein. LemA contains an amino terminal predicted transmembrane helix. It has been predicted that the small amino terminus is extracellular. The exact molecular function of this protein is uncertain.	4.04196e-80
NZ_AP012325.1|WP_003807806.1|319892_320162_+|30S-ribosomal-protein-S15	gnl|CDD|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	9.54707e-57
NZ_AP012325.1|WP_003836108.1|306645_315978_+|type-I-polyketide-synthase	gnl|CDD|227315	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein].	0

Protein sequences

>NZ_AP012325.1|WP_003807806.1|319892_320162_+|30S-ribosomal-protein-S15
MALTAEEKQEIIKTYATHEGDTGSPEVQVALLTKRIADLTEHLKEHKHDHHSRRGLLLMVGDRRRMLDYLKRVDINRYRSLIERLGLRR
>NZ_AP012325.1|WP_003836102.1|319085_319760_+|hypothetical-protein
MAQTQGNKVTEVVDGVVEQVDVSKHPTASIEASDLSLADIERRKSHPGHWALFIALMLVALIVPYWWGRFLAVKDAAWIVANLGFLDPKGVALISWTVTIMAMTGLGLMVADVKKWLWGTVFVVGLAAEQFVAGMCLLSFNFWNATYVMYGDSSGLANAANLGIIAAGCGVAVYAVLWVGLLVCIKKESKFNVLTRSWASFLLFFVIEGISLAVVLFGGLLNVV
>NZ_AP012325.1|WP_003836103.1|316954_318772_+|alpha-amylase-family-protein
MARSKSDQAFDERIAKNSEELHELLTELYGEQADEAFRNLTELMKSSYAARPADLKRLDTKRLADPEWYKRGNMFGMTMYTDLFAGDLKKLADKVPYLKEQKLTYLHLMPLLKMPHPQNDGGYAVEDFDTVDPSLGTNEDLAALTKKLRAAGISLCLDFVMNHTASSHRWAKAAQAGDPKYQDYYYCYDDRTVPDQYDAVVPEVFPATAPGNFTWSEQMHKWVLTSFYPFQWDLNYRNPNVLVSVLSSVLGLANLGVEVFRIDAVPYIWKELGTNCRNLPQVHTIVRMLRIVLECVCPSVVLKGEVVMAPKELAAYFGTPEKPECHMLYNVSIMVNLWSALASGDVRLLKDQLDKLNALPENCWFVNYLRCHDDIGWGLDEPVEESLGIDPLKHKEFLYHFYEGSVPGSWAMGELYNYDEASKDARSCGTTASLCGVERALITHDKPLLDISMKRDLMMHSALSFLRGFPMLSCGDEIVQLNGWEYKEDPDRVEDSRNLHRSPFNWENAAKRKRAGTLQKQMWDGLKSIREMRDDSAFTPEAWVTTWDTHNDAVLAVVRHVEGRTVLGLFNFSSARQSAHLDSDGDITLPAEVALEPYQVCVVKK
>NZ_AP012325.1|WP_003836106.1|316298_316757_+|holo-ACP-synthase
MLGLGHDVVDVPAFAEQLDEPGSRMRNLFSMRERWQTAQRMQVKRDGEAVHLAARWAGKEAFLKAWCEAISHRTKGDGDVAYPYTLDDFPWERIEILDDSHGVPHVMLSPGVRCKLQQSLGLPVNGDGQSCEIHISMSHDGSVASAVVTIEA
>NZ_AP012325.1|WP_003836108.1|306645_315978_+|type-I-polyketide-synthase
MNTFFLDRLNGEPHALAFAGQSTPWPVALTDQNANPVLNEALHAHADAAQALLYPVSADLLATTGRPVDLFGFEPNPARLGAAAAASASVPGIALAQLGALLDAASLGYNPAVAKPVAVLGHSQGVLAVHMVQSIVEAGSIEAASAQIDEILAIATLIGVAGTRQARQLGLAARHGEATPMLSVKDITRAQVDALIKRVSGARGPIAVAVTNSATHYVLSGYPEDLAAFGVEVAKEHKHQAKLREEKVRGGRVFEPVLEYLDVTLPFHSPLMADAVSQAVSWAESCGIDADHARELAAEVLLNHVDWAARVRALMKSTDPSALWVLDFGPGTTVGKLFSTVAQGTGVGVVEASTVADRGELSTLETLPERTQNWTRFAPSIIHTSAGDKVRTAFTELTGKAPVLLAGMTPTTVEPEIVAAAANAGYWAELAGGGQVTASVFDRHVAKLEEELEEGRTVEFNAMFMDRYLWNLQFGSQRIVPKKRASGTPIDGVVVSAGIPELDEAVELIHNLNADGFPYVSFKPGTVDQIRQVVRIAKAVAPVKVLIEVEGGSAGGHHSWESLDDLLLSTYAEVREQSNLVLVVGGGIGTPERGADYITGEWSAEYGRPLMPVDGVLVGTAVMTAKEAHTSPEVKQMLVNTPGIPAKGADADPFAPLGEQWVPSGQAKGGVTSGLSHLHADIYELENSSARCGRLLVRVMKHPEELESRREEIIEALNATAKPYFGDLKAMTYLAWAQRFADLAFPWVDETYADRFLHLLQRIEARVTTQESGEFASLFASRADVESDPHAAIAKLAEVYPQADELTVTPMDEAWFPVLVREYPKPMPFVPVIDNDLLRWWGQDQLWQSEDSRYSADSVRIIPGPISVAGITTVDEPVADILGRFEATMVKRVSAESPIAAKTAFAQLGAASSAEEFIRKSPNISWVGHLMANPAYGTSNGDANYEIRKISSEGSVEKYDLDIHLDTYWDNDPDGGKSKHAVRDIVIPLNVDGNESGLFPVVDRDRLPEHVYRMLADTAGIGNTAITGDKLTAMPVIEQVADKASYPFGQAHASYTLSANLGFDHEAATGGALPSNLVPSRIAPDALVGPAWPAIYAALGSVYVNGFPVIEGLLNAVHLDHLIELEVSEDELLKHIGEQIALTSWAEDYFESASGRVVTIHVTHSTQDGTVLANETERFAIRGRAYSDALPTEAPDYGGIDAEIESTPRRLLRRVKVTAPHEMTAFARTSGDFNPIHTSHRGAAVSGLAAPLVHGMWLSATAQYAVQALDGKGAHYEIAGWTYNMYGMVQLDDEVEISIERVGRVAHSGMVLEVTSRIKGNIVSRGTAIVRAPKSAFVYPGQGIQQQGMVLDERAKSPAARDVWKRADKVTREKLGFSILAVVRDNPKELTANGVTYRHPEGLLNLTQFTQVALATVAFAQTARLREAGADIWPAYFAGHSLGEYNALSSFAGVIPLETVIELVFHRGSTMHHLIPRDAKGRSNYRMGALRPNQFGVGDDGVREYVESVSKASGEFLQIVNYNLAGQQYAVAGTIAGLKALKADSSRRVAEYGGKPAFMLVPGIDVPFHSTLLRKGVPEFRDKLDALLPQTIDYRGRLVGRYIPNLVAAPFEMTKEFAAKILEVVPSERIQAALDDPQIWDSYAADDQKLGRLLLTELLSWQFASPVRWIETQALLFGSSEQGGLGVEEYVEVGLGNAPTLANLGSKTLRLPQFAGRDVTVYNVGRDEGRVYMTDSDSLVPEEDADDSAVATSASSAAAAPAVASAPAAAPAAVAEVPVVAAPAGAPSDVAVADIAFKASDAIATLLAYSAKVRPDQIGESDTTDTLTNGVSSRRNQLLMDISSELGVASVDGAAEATVKALSALVNKVAPNYKAFGPVLSDIVRDRVRGMFGAAGVKLGQITKRVTDTWQLGEGWASHVVAALVLETREGASSRGGDLASLSTDAASNAAAANALIDAAVQKVAADKGIAVAMPSAGGAAGGAVVDSAALDAFAAKVTGADGVLASTAKFVLNQLGVVAPVAEETADENAAVVAAVEAELGADWPKQVEPRFDERKAILFDDRWASAREDLARAYYNNDESALNGSFIGLGKTIADEAAWYAGKSDNADLKIAFNRVAAEAGENASESAENSRFAGDIAVVTGVAPNSIAAQVVNGLLAGGATVVATSHSFKPSVKAWAKQTYREHAAGDAKLWLVPANLSSYRDVDALVAWVGNVQKKTSGATTTILKPAYEPSLFFPFAAPPVHGNLADSGELFESQTRLMLWGVERAIAGLAKIGADTDVQHKLHVVLPGSPNRGIFGGDGAYGEVKSAFDAIVNRARAEKVWSSRVTFAHPKIGWVRGTGLMGGNDPLVEVVERHGLKTYSTAEIAVELLNLSTRESRIEAAKAPLDVDLTGGLGNEPIDIKALRAEAMEDAVQAEAANAKNAIAGDESDTAAKTLIKALPSPRAPRQAKVDLVDWQNVTARPEDEIVIVSVGELGPWGSGRTRFEAELGIHSDGQVDLSAGAVLELAWNMGLLTWNDSPKPGWYDVDGNLVPEEDIAERYHDEVVARSGVRPFDEGMGNDYKDGTDEEEAEVFLDHDVTFSVPTREIAEEYVKLDETHTSFAADVESGEWNVTRHAGSMIRVPRRAAMTRTVGGQFPKGFDPVKWGIPASMVGDVDKIALWNIVTTVDAYLSAGFTPTEILEAVHPSMVASTQGTGFGGMASMRKLYLDRFLNHEIPTDILQEALPNVVAAHVMQSYIGGYGNMVQPVSACATAAVSLEEGADKIALGKADFVVTGAIDDIGVESVIGFGNMNATANSEEMYAKGIDARFFSRANDRRRGGFVESQGGGTILLTRGDIALKLGLPVAGVIGFVHSYADGAHTSIPAPGLGALAAGMGGKDSKLVRDLARLGITPDDIAVVSKHDTSTNANDPNESELHNTLAHAIGRTDGNPLFVISQKTLTGHAKGGACIFQVNGLTQLFKSGVIPANAALDCVDPKLMRDDHMVWLREPLKVGSVKAGLATSLGFGHVSGFAAIVNPGAFEAAVANTAGVEVLNAWRDRANERLAAGQRRLEEGMMGRAALYEPIDNRRFHEDGRGYNAHEVEKAMLLDPNARLSASGYFEA
>NZ_AP012325.1|WP_003836109.1|304865_306548_+|acyl-CoA-carboxylase-subunit-beta
MTDIIASPAVKEAVKIVMEQQERLGKNAAEAVSAAATASATDVPGASQPIRASVLRAAQLAHEAEDHARNRQHVKGKLTARERLDLLLDTGSFEEIGRFCGGDINGGRAGAAVITGFGEVFGRKVAVYAQDFSVRGGTLGVAEGRKICRLMDKALDLKVPIIALIDSGGARIQEGVAALTQYGHLFRKTCDASGFVPQLSLILGPCAGGAVYCPALTDLIIMTRENSNMFVTGPDVVKAATGEVISMDDLGGGYVHNATSGVAHYLGEDEADAIDYARTVLAYLPSNSDLQPPTYAYAATRSDRDVAKRLATIVPDNDRQPYDVLDVIRCIVDYGEFVQVHELFASSAVVGFACVNGHPVGIVANQPNVNAGILDVDSSEKVARFVRLCDAFNLPVVTLVDTPGYKPGAEQEHAGIIRRGAKVIYAYANAQVPLVTVILRKAFGGAYIVMGSKAIGADLNYAWPSSQIAVLGAAGAVNIIHRKDLQKAKDAGKDVEALRAKYVADYERTTVNANLSLEMGEIDAMIDPEQTRETIIESLKLLSSKKRVRKTTKHHGNQPL
>NZ_AP012325.1|WP_003836110.1|302970_304866_+|ATP-grasp-domain-containing-protein
MPKNVNKLLVANRGEIALRVVRTAREMGIPTVAVYAEQDRHAQYVQMADDAYLLSGDTYKDTYLNEDLLIDILQRSGADAVHPGYGFLSEVASFAQKVIDAGAAWVGPNPEALVDLGDKITARRVATFAKVPPVPGISQSISDMRLLLDFAHTHGYPLMLKRTDGGGGRGITLVHNDDELRGFYMNHDALQGGDLNEYFVERFIDKGRHVETQCGRDSHGNFTVYSTRDCSVQRRNQKLVEEAPAPFLPSDVTDQLETYSRRLFEAVDYEGLGTCEFMVTEQGKVYFLEVNPRLQVEHTVSEEVCGLDLVREQLTIANGEELTVNHPLRGHSFELRLTCEDPAKNLAPSSGTLTSLRWPSGPGIRVDSGVVEGDTISPKFDSMMGKLVVTASDRAAAVARVRRALSELKVEGVPTPASLFEQIFNDDEFTAEHGAAYDVSTKWLERKYLNKEAVSSQGGQPASVSGTTGSLDVDKKESSETFVIEVNNRRVSLTVPNDIVANLTGGAKARDAKRAIQPLRGQGLHHAQKKQQSNDGQSGVIASPMQAVVTRINVAEGQQVAKGDLLVVLESMKMENYVYAPVKGAVTKIFVGPAAGVEAGETLMTIDVTGASGNGKQADGTAVGDTTEGGK
>NZ_AP012325.1|WP_033512602.1|302147_302729_-|biotin-transporter-BioY
MLTLKTTLKTATSGTLGSVLKPTLFAVLMWAASAAGAVPIPGTPVPITLQTFVVMLAALMLPWKQAGAAMLMYLAAGAVGLPVFAGGASTMALVGPSAGFLIGFLPAAVVTSLLKGEARTDSLKHGALTAARYLFACVAGCIVLDYLLGFIVQSAITGVALPIVAVASMGFIAGDAVKAVVASAVVAGLAKLK
>NZ_AP012325.1|WP_033512626.1|301195_302122_+|biotin--[acetyl-CoA-carboxylase]-ligase
MAILDSAMIMPRTCVAADQVLLLDTVGSTNTYAANLVREGVLFGANGADGVNSADGVNAGKSAWSGHEIVVIAANEQTAGRGRLDHTWTSVPGESFIVSLVVSVPVSIMRDLSVSGWLQMIAGYEMREAIVGAVRDCGGDFDGKIGTIALKWPNDIFVEGRKLGGILAEMVPITGCGDRVAIVIGVGLNLAVAQERLPIDMATSLQLIAHDLPDAAVMRDAIAARWVQGLRSRLADFEEDPHREAVRAREVMIPICWTLGKSCEAHFVDGTILRGKANALNDDASLTIEDQEGVLHRVSTADVGVLGK
>NZ_AP012325.1|WP_003836118.1|299031_301131_+|hypothetical-protein
MPLMSEVKKTGKRGGKVGTFLSWTLAVLACLWVAWCCAIGPLYWFGGGLSDFGWLNVLYLAVAFAICFSIVVALVRFGHGRRVLPRYFVRRYERLCDEIAGTPTTVLGIMLRHLHDAAHSRPGRALHAMIVWLGRKLTRCTDCWWKLMLVFVIGWLWVPTTLLAAFGADIRSQIREFSWALNQWMGLKQPYIGFFSFVPMDIYPTAHYMWPDNPTYLTDQHNVVLTVFYGAVAAVSRYFTDSNDAGIVVLAALQWLFAAFCCSATANRFFNLPWRRLGVGTFDFSHPERHDCWNMRDYTHPEAGVVARPSRLRAGAKTRFVILLFFMVCPLAVFATISLTKSPLFAFAFVWWFGVWYELHMTHIKALPTINSKPTRLRKRSIMALIISSCVMLISAKYAWYIILFTLILALINDRKRWKTYLVALLLPTILIHGGIVFLTNTGAIIGGDPIESRGIQLQQIARVAKYNPKGIPADAAEKLEPIFNLDQMAEAYSWQDADPVKSSGIQSKKVSYKWRTVTEDDMKNFNEAWLEIVVANPVIALDAFFAECFGYFNVTDLPYVSMDYYVNNDYVQSGNVWIHLYNHDWRDAVAGFAKGWGNIPVVGWVTHGNLYVTLMLLVGAAEVVLRRWRSLSWHLPLLLLMGVMITAPANNFERHMLPVAFVFGFVCLQFWRESRNARLAANANVVSEHEASQVRQDE
>NZ_AP012325.1|WP_003836099.1|323254_323815_+|LemA-family-protein
MVVGIIIAVIVVLIVLWAVSAYNGLVTLRNRVKNGWAQIDVQLKQRTDLIPNLVETVKGYAAHESQVFTQVTKARAGVVQAAQSGDVAQRIAAENQLSRALMNLQVVSENYPQLQANTNFMDLQSQLKSLEEKIAYARQFYNDVVQKYNTQTEVVPTNIIAGLFHFEQAPYFQVDEADRQVPQVKF
>NZ_AP012325.1|WP_003836096.1|323912_326126_+|DUF2207-domain-containing-protein
MTAKQHASRAVRSFGIAIVVTVGIVAALLLFMVLDDGGADLSYKTLDYDVQVQSNGDLKVTQHIDMKLADRSDDDGDHPWKQLYQQYMLKGSDLTNITDISVRNVTTGETYQQGDIAIPSSYSTDEWNREHAKQWYIADVSQGDSNPQPFDPAKDGLVSGNTDDRSKKIEIGWNIPSITSASSLKFDVTMTMQGVTTAYQDMATFQWEPLGVSNQIPIGKVTGTVTFPKGIDADNSWAWLHTECTSETERDKNGSLKFTVYDVRAGDYVDVVAMFDVGATGGVERTRDTTIKNGIMKSEAKQEQQWRDQQRKQARIRLITWIAIAVVGLVLCVIAIIFALRSFNRSQYHGGVEYWRDEPEMSPASAAELLHMVDNKHSSTLTSRKMSASVLSLASRGAIAIYPGVAAMYRGIDMSQANNADIARMIANDPARIRDVGKTSTVVILPVVFNNVQSLQLRPSEQAALDLLVTASERIGSPVFDLDQMNENFSGWKNGYKLQEKFTNTCDNEFAMLGATSIYGGGAFAASICAVMLAFLSMLYFGAIGNLALLAVISAPMMFASVFALSYLKLKGLTDNGQYLAGQVLGLKHYMEDFSEFKDRGVTDMTLWGRYMVYATAFGISEKAMKQLLKAYPQLADPHWLDNNASDSLLYWSYRSWYFDHRYTGPASFDTNSMDFSQFSANFGDIGAQLESGFADIQSTISAASTSGSFSGSGGSFSGGGFGGSSGGSGGGSFGGR
>NZ_AP012325.1|WP_033512604.1|326232_327096_+|aldo/keto-reductase
MALFRNLGPFHTTAIGHGEMPLTIENNRGHDVGIETLHASLDAGCRHIDTAWAYYTPGEEEQTGEKLVREALDSWKGPREEVTVATKVGLRRAWEGDKPVWPRDGKPEHLIEYGKQSAMALGVDSIDLLYLHRHDPEVPYNESCEGIKALLDQGVAQWAGVSNVSIEQLKIAQEILGDKLVAVQNQYSPIHLDTQDTLDYCAEQGLAFVCWSPLGGYRHPYDEHLFDPFREVAETRGVSYQRVVLAWELAKGDHMFVIPGAHRPETILDSLKADELELTEEELAKLG
>NZ_AP012325.1|WP_033512606.1|327259_328798_+|U32-family-peptidase
MQRRNKPEVLAPAGNLRGLKTAVDYGADAVYCGGKAFGMRSAPKNLSLEDFEEGSRYAHERGARVYVTCNVLPRNNEVEAMREYIGQLKDTGVDALIVSDIGVMLMAREVAPNLELHVSTQAGVTNYQAANAFYQLGARRVVLAREMDLQAVRDIRARIPDDLDIECFVHGAMCMAFSGRCLFSNYLTGRDGNHGECAQPCRWKYSIVEEKRPGQYFPIEQTKEGAYLFNSQDMNMLAHIDDLLDSGATSLKIEGRSKSAYYIAAMTNAYKTAVDAYMVQRGFEDEDGTVLKPFHDRVIRPSDPDYGKPETTDAIMEHADGAFAGKPDIAAVPVASAGEPDDLSYHARSTRRKSNTAAEILPEGWYHAGVRPAEHVSLPDWLLDEPDKVAHRDYSTGFYYPEHKVQQSTDRSAYFRAWLVVGEVLSWSPEDGGRVTIMSRNKIEAGQEVEFVLPGAAPLAYTVPAGGFRDADGHWVEAINNPAHVFSMPCPQEVPVNAAIRSRTKKPTLKAE
>NZ_AP012325.1|WP_003836090.1|328881_329898_+|laccase-domain-containing-protein
MTDKQYDDAILDSNAIDPTDVDGNPIPVTIPIMLAPGVKVVYTTRLGGTSEGDYAHCNLGGKTGDDPNHVLANRVALSNAIDAKLSLVSQVHSGVAVDMDESFVMNRPFGFDASGSKGETAQQVAETADNPAVVEADGQVTAQKNVALGMFAADCLPVLMADAEAGVIGAAHCGRRGLQNGVIGATVEKMVAKGAKPERIVATLGPCICGDCYEVGGDIADEFDAQFPGTFTLSRFGQPGIDIAAAALQELAKAGVPADNVVSSRARVNAATQYLSEDEELAEICQSDGEGEPQLAERFKKIRRSLCTLENPLWFSHRRATIAGKAHEGRMLALIVRE
>NZ_AP012325.1|WP_003836089.1|329985_330813_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MSEREQMQEQKMPVVAVVLAAGFGTRFDENNPKQLVSVGDKPIVCWSIEAFERNDRVSDIIVVVNERVSNMVNMLIDEAGYTKVRAVIPGGSERVDSTRAALDLLKQAGIPDGAKILIHDSVRPFVEQQSIDGCIDGLDQFNAATVAYASTDTILLTEDLGERKVVRSVPDRTDAFRAQTPQAFRFGTITKAYELATADPDFHPTDDTRVVVDYLPNEPVAIVAGSETNLKITTQADMPIAENIAHSLDPEHAKQEAKARMHAVFAEAFSQMHKH
>NZ_AP012325.1|WP_003836087.1|330854_331544_+|pyroglutamyl-peptidase-I
MQQINIVISGFTPYDGIDVNPAVLVPVALAEYWNDPSQSVVLSDDLLQDISISVTTVTLPVSFANAWPMLLNAIEQANPDIVIATGLKRSARGVLLERCATNLMDAAKPDADNVIPPRRPINPEGPAAYWTRLPLRSILRDFAKHEIPAALSSDAGTFVCNSLFYHLLDWSAAQEKRILSGFVSLPIVNEQPHPQHGLSIAQQIAAGNDVIRESVRYYLQPSSSEILLG
>NZ_AP012325.1|WP_047750562.1|331692_333171_+|cell-division-protein
MVEQFPIVLRGYDKERVDEAFASAQETVDRLREQVKADDQTILELQAQLQEEKNKKANPNSFASLGANAQQMLASAEQTSAELLDRAKKDASAARATVQLQAETLLNNAKLDAKRILDEANAKAEAVLSKANNDAGTLKSNAQREADQLRGEAQKAVVAQRQTVDLELTNSREEHDKRLASERATQERELSDMRAAATEQIAAQRKNANDEINRMKSETNDQIESALAEANKKLADVREQVSKMMTDAQRRASEITDTAKAKAQEITDEAEVHRTKTISQVNAEVEQIRADISAQQDEATKKVNELLADLNERRETAKKQSEELISEAQHTRDEAEAYASDKREAADKQAASILKQATEEADEQINERREAAKNELEGVQQRIADLQTREAQITQRVSELRAMFANAFSGFGANGLSVVNSIDGEQHESAAEAETPAESHDESGETVAGEPEVTFDEDVVSDEQQNNDDFEEPSEDEQSDQGEEAQEEQNND
>NZ_AP012325.1|WP_003836084.1|333163_334504_+|C1-family-peptidase
MTDITPLSADALATLVEDFEASDHNRMAMNAVTAAGVNKVARNYDRARLMQRRFSTIVDNGTATHQDRSGRCWLFSSLNVARFVAKKNMGLKEFEFSQNYAMYYDKLERVNYFLQDVAELVKAGEPSDSRLIQHLLADVMGDGGQWTMAMNVYKKYGAVPKDLFPETESSKNTGEMNVQLRRLLHTAVAHMYADPASIESVIAEATAAGHRILTIHLGEPPKSFDWEWTDKDGEFHRDGEITPVEFWQKYVGSADLESYVCLVDDPRQEHAKGKKIGIEHLGNVAGGDPTEYLNVPNQFMKDCVRQILEEQGIPVWFGADCHPMMDRENGAWATDLFEYGKVYGVDFDLNKEDRVRFADSAMNHAMAFVGVDVAEDGTTTRRWRVENSWGDKIADKGYFTMSDDWFTEYVYEVAVPKALLPAEYQAALDEPATMLPAWDPMGALAD
>NZ_AP012325.1|WP_003836082.1|334680_335814_+|3-deoxy-7-phosphoheptulonate-synthase
MSGLRGPDSSRDAQLLDNAVFPETVDVNIRQLDPIPAPRYFLKEIPLTDEMSNLVLKSRQEIRDVLNGKDDRLLAIVGPCSIHDPKAAHEYAEKLAAVKKELEDRLVIVMRVYFEKPRTTIGWKGLINDPDLDGQFNIRKGMWLARKVLADVLGLGLPAATEWLDPITPQYICDLISWGAIGARNTESQVHRELASGMSMPIGFKNATDGSVKPAADSCFAAAFEHHFLSINLDGRVISAETKGNPDCHLVLRGSSHGPNYDTESVAKALADLKVSKASGPSEHGIVIDAAHGNCGKNEVREAEVVENIASRIAAGEQGISGIMMESFLKAGNQKPAPLDQLEYGKSITDACVPWERTEQLLHTLAEAVESRRRLAE

Crispr_ID: NZ_AP012325_3

• CRISPR_ID: NZ_AP012325_3
• CRISPR_location: 1508552-1510594
• CRISPR_type: TypeI-E
• Repeat_type: I-E
• Spacer_info: 33 spacers
• Cas_protein_info: cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

Consensus repeat of NZ_AP012325_3

Consensus_repeat	Method
GGGATCATCCCCGCGTATGCGGGGAACAC	PILER-CR
GGGATCATCCCCGCGTATGCGGGGAACAC	CRISPRCasFinder
GGGATCATCCCCGCGTATGCGGGGAACAC	CRT

spacers of NZ_AP012325_3

>3.1|1508581|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
CTTCCGGCGTCGTCGGGTTCGTGTACAAGGCG
>3.2|1508642|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
TGCAAAGGAGTCTTGATATGTGGTATTTTATT
>3.3|1508703|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
CCAGTCAAACACAATGCGCGGCGCGTCCGTCT
>3.4|1508764|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
GGTGACAATAATGAAGAATCCATCGAAGACTT
>3.5|1508825|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
GGTGACAATAATGAAGAATCCATCGAAGACTT
>3.6|1508886|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
CTTACCGGCAACCCGTACTTGCTCATGGTGCA
>3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
TAGGCTTCAGCGTTACCAACACGAACGATGCC
>3.8|1509008|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
TGTGAGGGCTTGTTCGTTGCGTCTGGTGATGT
>3.9|1509069|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
TTCGACCACAAGGGCGAGACGCTGCCTGCCCA
>3.10|1509130|33|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
CAGTCCGGTGCCCCAATCCAATTCGTCGGCCTC
>3.11|1509192|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
TTCATTCTCGGAATTTTATAACACAGTTGACC
>3.12|1509253|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
CTCATGATGTCTTCGTCGGTGAGTGCCATATC
>3.13|1509314|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
TTTCCGTCCGGTAATGGTTGGTGTTCGCCCAA
>3.14|1509375|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
GCGCTGTTAGCCAATGCCAACGCTGAGCCGTT
>3.15|1509436|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
AATCCTCAAGCGCAAAATCTGATTATCGCCGT
>3.16|1509497|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
CGAATTCCACCTTACTATCTCGCTCAAGTCGA
>3.17|1509558|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
CGTAAGGAAACCTTCTTCAAAGACATTCAAGA
>3.18|1509619|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
TTGCCATTGTCTCGTACTACGATAGCGACGTG
>3.19|1509680|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
GTTCTTCCTTCCTCCGTCGCGTAGGACGGTTT
>3.20|1509741|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
CCCTGGATGCTGCCGACCTTGCCTATAGTGGC
>3.21|1509802|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
CGCCCTGCCGGCCTCATCAGCGACGGCCAGCA
>3.22|1509863|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
GTAACGTATTTGCCTGACCCTATGCGTGAGGA
>3.23|1509924|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
TTGCGGGTCAGGACACCGGTTTGGCACTCCCT
>3.24|1509985|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
ATTGGCGTCACCGACTATGCGGATAATGCGCC
>3.25|1510046|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
CAGCTTCAGCGAGTTTTACAACACTGTTGACC
>3.26|1510107|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
CCAATCATCAGAGGCGGCTTGAGGTCCCGTAT
>3.27|1510168|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
ATGTGGCGTAGCGTGTTGGCGTGCGTGTGCGC
>3.28|1510229|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
GTACGAAAACGGCTGAACCGTCGTAAAATACC
>3.29|1510290|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
GCAAGCCATCGGAGAAGTATGGCTAAGGTACG
>3.30|1510351|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
TGGCATATCTGAGACATGGTGATAAAACACCT
>3.31|1510412|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
ATGGGCATTAACAATGCTTACGCACAGGCTCA
>3.32|1510473|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
TAACCGTTGTCGGGAGTGTGGGTTTTCCGATT
>3.33|1510534|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT
AAAAGACTACCGCAAACACACACCATACGTCC

CRISPR arrays and Neighbor proteins around NZ_AP012325_3

CRISPR arrays

The CRISPR arrays of NZ_AP012325_3

>merge|NZ_AP012325|3|1508552-1510594|PILER-CR,CRISPRCasFinder,CRT
GGGATCATCCCCGCGTATGCGGGGAACACCTTCCGGCGTCGTCGGGTTCGTGTACAAGGCGGGGATCATCCCCGCGTATGCGGGGAACACTGCAAAGGAGTCTTGATATGTGGTATTTTATTGGGATCATCCCCGCGTATGCGGGGAACACCCAGTCAAACACAATGCGCGGCGCGTCCGTCTGGGATCATCCCCGCGTATGCGGGGAACACGGTGACAATAATGAAGAATCCATCGAAGACTTGGGATCATCCCCGCGTATGCGGGGAACACGGTGACAATAATGAAGAATCCATCGAAGACTTGGGATCATCCCCGCGTATGCGGGGAACACCTTACCGGCAACCCGTACTTGCTCATGGTGCAGGGATCATCCCCGCGTATGCGGGGAACACTAGGCTTCAGCGTTACCAACACGAACGATGCCGGGATCATCCCCGCGTATGCGGGGAACACTGTGAGGGCTTGTTCGTTGCGTCTGGTGATGTGGGATCATCCCCGCGTATGCGGGGAACACTTCGACCACAAGGGCGAGACGCTGCCTGCCCAGGGATCATCCCCGCGTATGCGGGGAACACCAGTCCGGTGCCCCAATCCAATTCGTCGGCCTCGGGATCATCCCCGCGTATGCGGGGAACACTTCATTCTCGGAATTTTATAACACAGTTGACCGGGATCATCCCCGCGTATGCGGGGAACACCTCATGATGTCTTCGTCGGTGAGTGCCATATCGGGATCATCCCCGCGTATGCGGGGAACACTTTCCGTCCGGTAATGGTTGGTGTTCGCCCAAGGGATCATCCCCGCGTATGCGGGGAACACGCGCTGTTAGCCAATGCCAACGCTGAGCCGTTGGGATCATCCCCGCGTATGCGGGGAACACAATCCTCAAGCGCAAAATCTGATTATCGCCGTGGGATCATCCCCGCGTATGCGGGGAACACCGAATTCCACCTTACTATCTCGCTCAAGTCGAGGGATCATCCCCGCGTATGCGGGGAACACCGTAAGGAAACCTTCTTCAAAGACATTCAAGAGGGATCATCCCCGCGTATGCGGGGAACACTTGCCATTGTCTCGTACTACGATAGCGACGTGGGGATCATCCCCGCGTATGCGGGGAACACGTTCTTCCTTCCTCCGTCGCGTAGGACGGTTTGGGATCATCCCCGCGTATGCGGGGAACACCCCTGGATGCTGCCGACCTTGCCTATAGTGGCGGGATCATCCCCGCGTATGCGGGGAACACCGCCCTGCCGGCCTCATCAGCGACGGCCAGCAGGGATCATCCCCGCGTATGCGGGGAACACGTAACGTATTTGCCTGACCCTATGCGTGAGGAGGGATCATCCCCGCGTATGCGGGGAACACTTGCGGGTCAGGACACCGGTTTGGCACTCCCTGGGATCATCCCCGCGTATGCGGGGAACACATTGGCGTCACCGACTATGCGGATAATGCGCCGGGATCATCCCCGCGTATGCGGGGAACACCAGCTTCAGCGAGTTTTACAACACTGTTGACCGGGATCATCCCCGCGTATGCGGGGAACACCCAATCATCAGAGGCGGCTTGAGGTCCCGTATAGGATCATCCCCGCGTATGCGGGGAACACATGTGGCGTAGCGTGTTGGCGTGCGTGTGCGCGGGATCATCCCCGCGTATGCGGGGAACACGTACGAAAACGGCTGAACCGTCGTAAAATACCGGGATCATCCCCGCGTATGCGGGGAACACGCAAGCCATCGGAGAAGTATGGCTAAGGTACGGGGATCATCCCCGCGTATGCGGGGAACACTGGCATATCTGAGACATGGTGATAAAACACCTAGGATCATCCCCGCGTATGCGGGGAACACATGGGCATTAACAATGCTTACGCACAGGCTCAAGGATCATCCCCGCGTATGCGGGGAACACTAACCGTTGTCGGGAGTGTGGGTTTTCCGATTGGGATCATCCCCGCGTATGCGGGGAACACAAAAGACTACCGCAAACACACACCATACGTCCGGGATCATCCCCGCGTATGCGGGGAACAC

>NZ_AP012325|3|1|1508552-1510594|PILER-CR
GGGATCATCCCCGCGTATGCGGGGAACAC	CTTCCGGCGTCGTCGGGTTCGTGTACAAGGCG
GGGATCATCCCCGCGTATGCGGGGAACAC	TGCAAAGGAGTCTTGATATGTGGTATTTTATT
GGGATCATCCCCGCGTATGCGGGGAACAC	CCAGTCAAACACAATGCGCGGCGCGTCCGTCT
GGGATCATCCCCGCGTATGCGGGGAACAC	GGTGACAATAATGAAGAATCCATCGAAGACTT
GGGATCATCCCCGCGTATGCGGGGAACAC	GGTGACAATAATGAAGAATCCATCGAAGACTT
GGGATCATCCCCGCGTATGCGGGGAACAC	CTTACCGGCAACCCGTACTTGCTCATGGTGCA
GGGATCATCCCCGCGTATGCGGGGAACAC	TAGGCTTCAGCGTTACCAACACGAACGATGCC
GGGATCATCCCCGCGTATGCGGGGAACAC	TGTGAGGGCTTGTTCGTTGCGTCTGGTGATGT
GGGATCATCCCCGCGTATGCGGGGAACAC	TTCGACCACAAGGGCGAGACGCTGCCTGCCCA
GGGATCATCCCCGCGTATGCGGGGAACAC	CAGTCCGGTGCCCCAATCCAATTCGTCGGCCTC
GGGATCATCCCCGCGTATGCGGGGAACAC	TTCATTCTCGGAATTTTATAACACAGTTGACC
GGGATCATCCCCGCGTATGCGGGGAACAC	CTCATGATGTCTTCGTCGGTGAGTGCCATATC
GGGATCATCCCCGCGTATGCGGGGAACAC	TTTCCGTCCGGTAATGGTTGGTGTTCGCCCAA
GGGATCATCCCCGCGTATGCGGGGAACAC	GCGCTGTTAGCCAATGCCAACGCTGAGCCGTT
GGGATCATCCCCGCGTATGCGGGGAACAC	AATCCTCAAGCGCAAAATCTGATTATCGCCGT
GGGATCATCCCCGCGTATGCGGGGAACAC	CGAATTCCACCTTACTATCTCGCTCAAGTCGA
GGGATCATCCCCGCGTATGCGGGGAACAC	CGTAAGGAAACCTTCTTCAAAGACATTCAAGA
GGGATCATCCCCGCGTATGCGGGGAACAC	TTGCCATTGTCTCGTACTACGATAGCGACGTG
GGGATCATCCCCGCGTATGCGGGGAACAC	GTTCTTCCTTCCTCCGTCGCGTAGGACGGTTT
GGGATCATCCCCGCGTATGCGGGGAACAC	CCCTGGATGCTGCCGACCTTGCCTATAGTGGC
GGGATCATCCCCGCGTATGCGGGGAACAC	CGCCCTGCCGGCCTCATCAGCGACGGCCAGCA
GGGATCATCCCCGCGTATGCGGGGAACAC	GTAACGTATTTGCCTGACCCTATGCGTGAGGA
GGGATCATCCCCGCGTATGCGGGGAACAC	TTGCGGGTCAGGACACCGGTTTGGCACTCCCT
GGGATCATCCCCGCGTATGCGGGGAACAC	ATTGGCGTCACCGACTATGCGGATAATGCGCC
GGGATCATCCCCGCGTATGCGGGGAACAC	CAGCTTCAGCGAGTTTTACAACACTGTTGACC
GGGATCATCCCCGCGTATGCGGGGAACAC	CCAATCATCAGAGGCGGCTTGAGGTCCCGTAT
AGGATCATCCCCGCGTATGCGGGGAACAC	ATGTGGCGTAGCGTGTTGGCGTGCGTGTGCGC
GGGATCATCCCCGCGTATGCGGGGAACAC	GTACGAAAACGGCTGAACCGTCGTAAAATACC
GGGATCATCCCCGCGTATGCGGGGAACAC	GCAAGCCATCGGAGAAGTATGGCTAAGGTACG
GGGATCATCCCCGCGTATGCGGGGAACAC	TGGCATATCTGAGACATGGTGATAAAACACCT
AGGATCATCCCCGCGTATGCGGGGAACAC	ATGGGCATTAACAATGCTTACGCACAGGCTCA
AGGATCATCCCCGCGTATGCGGGGAACAC	TAACCGTTGTCGGGAGTGTGGGTTTTCCGATT
GGGATCATCCCCGCGTATGCGGGGAACAC	AAAAGACTACCGCAAACACACACCATACGTCC
GGGATCATCCCCGCGTATGCGGGGAACAC

>NZ_AP012325|3|3|1508552-1510594|CRISPRCasFinder
GGGATCATCCCCGCGTATGCGGGGAACAC	CTTCCGGCGTCGTCGGGTTCGTGTACAAGGCG
GGGATCATCCCCGCGTATGCGGGGAACAC	TGCAAAGGAGTCTTGATATGTGGTATTTTATT
GGGATCATCCCCGCGTATGCGGGGAACAC	CCAGTCAAACACAATGCGCGGCGCGTCCGTCT
GGGATCATCCCCGCGTATGCGGGGAACAC	GGTGACAATAATGAAGAATCCATCGAAGACTT
GGGATCATCCCCGCGTATGCGGGGAACAC	GGTGACAATAATGAAGAATCCATCGAAGACTT
GGGATCATCCCCGCGTATGCGGGGAACAC	CTTACCGGCAACCCGTACTTGCTCATGGTGCA
GGGATCATCCCCGCGTATGCGGGGAACAC	TAGGCTTCAGCGTTACCAACACGAACGATGCC
GGGATCATCCCCGCGTATGCGGGGAACAC	TGTGAGGGCTTGTTCGTTGCGTCTGGTGATGT
GGGATCATCCCCGCGTATGCGGGGAACAC	TTCGACCACAAGGGCGAGACGCTGCCTGCCCA
GGGATCATCCCCGCGTATGCGGGGAACAC	CAGTCCGGTGCCCCAATCCAATTCGTCGGCCTC
GGGATCATCCCCGCGTATGCGGGGAACAC	TTCATTCTCGGAATTTTATAACACAGTTGACC
GGGATCATCCCCGCGTATGCGGGGAACAC	CTCATGATGTCTTCGTCGGTGAGTGCCATATC
GGGATCATCCCCGCGTATGCGGGGAACAC	TTTCCGTCCGGTAATGGTTGGTGTTCGCCCAA
GGGATCATCCCCGCGTATGCGGGGAACAC	GCGCTGTTAGCCAATGCCAACGCTGAGCCGTT
GGGATCATCCCCGCGTATGCGGGGAACAC	AATCCTCAAGCGCAAAATCTGATTATCGCCGT
GGGATCATCCCCGCGTATGCGGGGAACAC	CGAATTCCACCTTACTATCTCGCTCAAGTCGA
GGGATCATCCCCGCGTATGCGGGGAACAC	CGTAAGGAAACCTTCTTCAAAGACATTCAAGA
GGGATCATCCCCGCGTATGCGGGGAACAC	TTGCCATTGTCTCGTACTACGATAGCGACGTG
GGGATCATCCCCGCGTATGCGGGGAACAC	GTTCTTCCTTCCTCCGTCGCGTAGGACGGTTT
GGGATCATCCCCGCGTATGCGGGGAACAC	CCCTGGATGCTGCCGACCTTGCCTATAGTGGC
GGGATCATCCCCGCGTATGCGGGGAACAC	CGCCCTGCCGGCCTCATCAGCGACGGCCAGCA
GGGATCATCCCCGCGTATGCGGGGAACAC	GTAACGTATTTGCCTGACCCTATGCGTGAGGA
GGGATCATCCCCGCGTATGCGGGGAACAC	TTGCGGGTCAGGACACCGGTTTGGCACTCCCT
GGGATCATCCCCGCGTATGCGGGGAACAC	ATTGGCGTCACCGACTATGCGGATAATGCGCC
GGGATCATCCCCGCGTATGCGGGGAACAC	CAGCTTCAGCGAGTTTTACAACACTGTTGACC
GGGATCATCCCCGCGTATGCGGGGAACAC	CCAATCATCAGAGGCGGCTTGAGGTCCCGTAT
AGGATCATCCCCGCGTATGCGGGGAACAC	ATGTGGCGTAGCGTGTTGGCGTGCGTGTGCGC
GGGATCATCCCCGCGTATGCGGGGAACAC	GTACGAAAACGGCTGAACCGTCGTAAAATACC
GGGATCATCCCCGCGTATGCGGGGAACAC	GCAAGCCATCGGAGAAGTATGGCTAAGGTACG
GGGATCATCCCCGCGTATGCGGGGAACAC	TGGCATATCTGAGACATGGTGATAAAACACCT
AGGATCATCCCCGCGTATGCGGGGAACAC	ATGGGCATTAACAATGCTTACGCACAGGCTCA
AGGATCATCCCCGCGTATGCGGGGAACAC	TAACCGTTGTCGGGAGTGTGGGTTTTCCGATT
GGGATCATCCCCGCGTATGCGGGGAACAC	AAAAGACTACCGCAAACACACACCATACGTCC
GGGATCATCCCCGCGTATGCGGGGAACAC

>NZ_AP012325|3|1|1508552-1510594|CRT
GGGATCATCCCCGCGTATGCGGGGAACAC	CTTCCGGCGTCGTCGGGTTCGTGTACAAGGCG
GGGATCATCCCCGCGTATGCGGGGAACAC	TGCAAAGGAGTCTTGATATGTGGTATTTTATT
GGGATCATCCCCGCGTATGCGGGGAACAC	CCAGTCAAACACAATGCGCGGCGCGTCCGTCT
GGGATCATCCCCGCGTATGCGGGGAACAC	GGTGACAATAATGAAGAATCCATCGAAGACTT
GGGATCATCCCCGCGTATGCGGGGAACAC	GGTGACAATAATGAAGAATCCATCGAAGACTT
GGGATCATCCCCGCGTATGCGGGGAACAC	CTTACCGGCAACCCGTACTTGCTCATGGTGCA
GGGATCATCCCCGCGTATGCGGGGAACAC	TAGGCTTCAGCGTTACCAACACGAACGATGCC
GGGATCATCCCCGCGTATGCGGGGAACAC	TGTGAGGGCTTGTTCGTTGCGTCTGGTGATGT
GGGATCATCCCCGCGTATGCGGGGAACAC	TTCGACCACAAGGGCGAGACGCTGCCTGCCCA
GGGATCATCCCCGCGTATGCGGGGAACAC	CAGTCCGGTGCCCCAATCCAATTCGTCGGCCTC
GGGATCATCCCCGCGTATGCGGGGAACAC	TTCATTCTCGGAATTTTATAACACAGTTGACC
GGGATCATCCCCGCGTATGCGGGGAACAC	CTCATGATGTCTTCGTCGGTGAGTGCCATATC
GGGATCATCCCCGCGTATGCGGGGAACAC	TTTCCGTCCGGTAATGGTTGGTGTTCGCCCAA
GGGATCATCCCCGCGTATGCGGGGAACAC	GCGCTGTTAGCCAATGCCAACGCTGAGCCGTT
GGGATCATCCCCGCGTATGCGGGGAACAC	AATCCTCAAGCGCAAAATCTGATTATCGCCGT
GGGATCATCCCCGCGTATGCGGGGAACAC	CGAATTCCACCTTACTATCTCGCTCAAGTCGA
GGGATCATCCCCGCGTATGCGGGGAACAC	CGTAAGGAAACCTTCTTCAAAGACATTCAAGA
GGGATCATCCCCGCGTATGCGGGGAACAC	TTGCCATTGTCTCGTACTACGATAGCGACGTG
GGGATCATCCCCGCGTATGCGGGGAACAC	GTTCTTCCTTCCTCCGTCGCGTAGGACGGTTT
GGGATCATCCCCGCGTATGCGGGGAACAC	CCCTGGATGCTGCCGACCTTGCCTATAGTGGC
GGGATCATCCCCGCGTATGCGGGGAACAC	CGCCCTGCCGGCCTCATCAGCGACGGCCAGCA
GGGATCATCCCCGCGTATGCGGGGAACAC	GTAACGTATTTGCCTGACCCTATGCGTGAGGA
GGGATCATCCCCGCGTATGCGGGGAACAC	TTGCGGGTCAGGACACCGGTTTGGCACTCCCT
GGGATCATCCCCGCGTATGCGGGGAACAC	ATTGGCGTCACCGACTATGCGGATAATGCGCC
GGGATCATCCCCGCGTATGCGGGGAACAC	CAGCTTCAGCGAGTTTTACAACACTGTTGACC
GGGATCATCCCCGCGTATGCGGGGAACAC	CCAATCATCAGAGGCGGCTTGAGGTCCCGTAT
AGGATCATCCCCGCGTATGCGGGGAACAC	ATGTGGCGTAGCGTGTTGGCGTGCGTGTGCGC
GGGATCATCCCCGCGTATGCGGGGAACAC	GTACGAAAACGGCTGAACCGTCGTAAAATACC
GGGATCATCCCCGCGTATGCGGGGAACAC	GCAAGCCATCGGAGAAGTATGGCTAAGGTACG
GGGATCATCCCCGCGTATGCGGGGAACAC	TGGCATATCTGAGACATGGTGATAAAACACCT
AGGATCATCCCCGCGTATGCGGGGAACAC	ATGGGCATTAACAATGCTTACGCACAGGCTCA
AGGATCATCCCCGCGTATGCGGGGAACAC	TAACCGTTGTCGGGAGTGTGGGTTTTCCGATT
GGGATCATCCCCGCGTATGCGGGGAACAC	AAAAGACTACCGCAAACACACACCATACGTCC
GGGATCATCCCCGCGTATGCGGGGAACAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP012325.1|WP_162014318.1|1497734_1498400_+|vitamin-K-epoxide-reductase-family-protein	unknown	unknown	gnl|CDD|240605
NZ_AP012325.1|WP_033512546.1|1511002_1511950_-|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl|CDD|274693
NZ_AP012325.1|WP_003834179.1|1512039_1512741_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl|CDD|378050
NZ_AP012325.1|WP_003834216.1|1498554_1499454_-|diaminopimelate-epimerase	unknown	unknown	gnl|CDD|234768
NZ_AP012325.1|WP_003834183.1|1510649_1511009_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl|CDD|378244
NZ_AP012325.1|WP_003834171.1|1515381_1517034_-|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl|CDD|378189
NZ_AP012325.1|WP_033512522.1|1517254_1520374_-|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl|CDD|182031
NZ_AP012325.1|WP_003834211.1|1500695_1502369_+|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|173853
NZ_AP012325.1|WP_128805868.1|1508192_1508495_-|hypothetical-protein	unknown	unknown	unknown
NZ_AP012325.1|WP_003834167.1|1520659_1523971_-|mupirocin-resistant-isoleucine--tRNA-ligase	unknown	unknown	gnl|CDD|235681
NZ_AP012325.1|WP_033512510.1|1507015_1507672_+|hypothetical-protein	unknown	unknown	gnl|CDD|223477
NZ_AP012325.1|WP_047750756.1|1514696_1515344_-|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl|CDD|378191
NZ_AP012325.1|WP_033512504.1|1499552_1500329_+|glutamate-racemase	unknown	unknown	gnl|CDD|234851
NZ_AP012325.1|WP_003834208.1|1502497_1503436_-|isoaspartyl-peptidase/L-asparaginase	unknown	unknown	gnl|CDD|366471
NZ_AP012325.1|WP_003834166.1|1524324_1525335_-|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl|CDD|380486
NZ_AP012325.1|WP_034248505.1|1503589_1504438_+|patatin-family-protein	unknown	unknown	gnl|CDD|132847
NZ_AP012325.1|WP_003834175.1|1513531_1514647_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl|CDD|378153
NZ_AP012325.1|WP_047750753.1|1504511_1505468_+|LysR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|176115
NZ_AP012325.1|WP_003834204.1|1505652_1506879_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl|CDD|224090
NZ_AP012325.1|WP_033512520.1|1512763_1513513_-|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl|CDD|187776

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_AP012325.1|WP_003834171.1|1515381_1517034_-|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	1.3e-90	299.3	0.0
NZ_AP012325.1|WP_033512546.1|1511002_1511950_-|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	1.6e-108	356.6	0.1
NZ_AP012325.1|WP_033512522.1|1517254_1520374_-|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	6.9e-59	194.3	0.0
NZ_AP012325.1|WP_003834183.1|1510649_1511009_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	1.8e-29	96.4	0.0
NZ_AP012325.1|WP_003834175.1|1513531_1514647_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	2.3e-104	344.5	0.4
NZ_AP012325.1|WP_003834179.1|1512039_1512741_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	2.5e-62	205.5	0.0
NZ_AP012325.1|WP_047750756.1|1514696_1515344_-|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	1.7e-27	91.1	0.0
NZ_AP012325.1|WP_033512520.1|1512763_1513513_-|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	1.4e-52	172.8	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_AP012325.1|WP_162014318.1|1497734_1498400_+|vitamin-K-epoxide-reductase-family-protein	gnl|CDD|240605	cd12922, VKOR_5, Vitamin K epoxide reductase family in bacteria. This family includes vitamin K epoxide reductase (VKOR) mostly present in actinobacteria. VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. In some bacterial homologs, the VKOR domain is fused with domains of the thioredoxin family of oxidoreductases which may function as redox partners in initiating the reduction cascade.	2.22154e-45
NZ_AP012325.1|WP_033512546.1|1511002_1511950_-|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl|CDD|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.30392e-127
NZ_AP012325.1|WP_003834179.1|1512039_1512741_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl|CDD|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	6.45375e-81
NZ_AP012325.1|WP_003834216.1|1498554_1499454_-|diaminopimelate-epimerase	gnl|CDD|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	3.7412e-74
NZ_AP012325.1|WP_003834183.1|1510649_1511009_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl|CDD|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	1.39366e-41
NZ_AP012325.1|WP_003834166.1|1524324_1525335_-|LacI-family-DNA-binding-transcriptional-regulator	gnl|CDD|380486	cd01544, PBP1_GalR, ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type 1 periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar binding of ABC-type transport systems.	1.78262e-76
NZ_AP012325.1|WP_033512522.1|1517254_1520374_-|CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.09022e-74
NZ_AP012325.1|WP_003834211.1|1500695_1502369_+|ABC-transporter-substrate-binding-protein	gnl|CDD|173853	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel/dipeptide/oligopeptide transport systems, which function in the import of nickel and peptides, and other closely related proteins. The oligopeptide-binding protein OppA is a periplasmic component of an ATP-binding cassette (ABC) transport system OppABCDEF consisting of five subunits: two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Similar to the ABC-type dipeptide and oligopeptide import systems, nickel transporter is comprised of five subunits NikABCDE: the two pore-forming integral inner membrane proteins NikB and NikC; the two inner membrane-associated proteins with ATPase activity NikD and NikE; and the periplasmic nickel binding NikA, which is the initial nickel receptor that controls the chemotactic response away from nickel. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand binding domains of ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	7.62499e-135
NZ_AP012325.1|WP_003834167.1|1520659_1523971_-|mupirocin-resistant-isoleucine--tRNA-ligase	gnl|CDD|235681	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NZ_AP012325.1|WP_003834171.1|1515381_1517034_-|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl|CDD|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	9.25618e-104
NZ_AP012325.1|WP_047750756.1|1514696_1515344_-|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl|CDD|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	1.2628e-24
NZ_AP012325.1|WP_034248505.1|1503589_1504438_+|patatin-family-protein	gnl|CDD|132847	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.	5.35015e-105
NZ_AP012325.1|WP_003834208.1|1502497_1503436_-|isoaspartyl-peptidase/L-asparaginase	gnl|CDD|366471	pfam01112, Asparaginase_2, Asparaginase.	1.35436e-102
NZ_AP012325.1|WP_033512510.1|1507015_1507672_+|hypothetical-protein	gnl|CDD|223477	COG0400, COG0400, Predicted esterase [General function prediction only].	2.45126e-14
NZ_AP012325.1|WP_003834175.1|1513531_1514647_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl|CDD|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	2.37482e-144
NZ_AP012325.1|WP_047750753.1|1504511_1505468_+|LysR-family-transcriptional-regulator	gnl|CDD|176115	cd08423, PBP2_LTTR_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.45423e-30
NZ_AP012325.1|WP_003834204.1|1505652_1506879_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl|CDD|224090	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism].	5.70433e-111
NZ_AP012325.1|WP_033512520.1|1512763_1513513_-|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl|CDD|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	4.23439e-48
NZ_AP012325.1|WP_033512504.1|1499552_1500329_+|glutamate-racemase	gnl|CDD|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	1.55195e-111

Protein sequences

>NZ_AP012325.1|WP_128805868.1|1508192_1508495_-|hypothetical-protein
MRQSWANHAGVSLPALERYGFTDVDRVLWAMRGGLANTDWNGLKYRDVKTGNSKAVITMSDLWPNLANPDDAQQFIVDMMRNALRLQTQRNIRLDPSNPR
>NZ_AP012325.1|WP_033512510.1|1507015_1507672_+|hypothetical-protein
MRLNVSTSIDVTACETDGDNLLFLGFHGFSNDENEMIRIIDAIYDVPKRDVSSTDNSIASAQHPNYLSFRGTYERPYIGSYYWYPDGCSVGERRRECSAVGDAIVRLLDSPAYVRFRKVLIGFSQGGYLSYRMIAEHPDVFDMAILMSPSFKGETADLLPATGRTRFALCYGSEDRTIPLSDQQCARNKLAQTGNLTYFEYPGMAHDICNQEIHDLRA
>NZ_AP012325.1|WP_003834204.1|1505652_1506879_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MEEIMDIKHRTDSGFNADAIDHTTAADLAEVGSDKWTRYPGCIGAFIAEMDYGLAPCIQEAIDNACDHCKLGYIPDPWKQRVAEACAGWQRTHYGWNVDPSIIRVVPDVLEAYEIFLRELVGAGNSVIVPTPAYMPFLSVPKLYDVNVIEIEMLQSGDTETGEAQWLFDFDAIERAFAAGCHAFVLCNPHNPIGKVLTLEEELRLSDLAAQYDVRIFNDEIHAPFVFEGKHIPFPTISEQAALQSMTATSASKSFNIPGTKCAQVLLTNPTDRDMWAVKAEWSEHQTATIGAIATTAAYNEGDPWFQDALAYVRRNLDLFDEQMRERFAGVGYIKPQGTYITWLDFGPLGIDDPATYFLEKAQVALTDGRLCGEAGAGCVRVNVAMPYPLLVDCLDRMYGALHADGLL
>NZ_AP012325.1|WP_047750753.1|1504511_1505468_+|LysR-family-transcriptional-regulator
MTANATGFSTKTLNPQILVTLWNVERLGSFSAVARETGWSQPAISQQIRKVERELDAKLVQRTSHGVGLTPIGRILARHGQLIDNRVTQAVKDVEEYQRNGSTHIRLVAPPSVCSSFVARVLVHISKTSDIRVSLMQMEPPEAMDALEQGLADCAIIFQYNSLPALVGPDDLEVSPFGIDPLMLLISANNTITRQYESSHLPVQLVSARGEQWIAGCETCRANLVSLARTAGFTPEITHSTDDYWATQNLVEVGMGVSIVSRLATTAGTQPDLAALPIADDNAFRTVCFVTRKADDRPAVARVKDEIEKASHQYLESI
>NZ_AP012325.1|WP_034248505.1|1503589_1504438_+|patatin-family-protein
MAHRTAMIDVGGGFRAIYGAGVMDRMLEDGISVDHCYGVSAGSANMVSFIAKQHGRNHTFYTQYAFRKEYASFDSYVKNHNFANLDYVYSTLSNHDGENPVDYAAFEANPTDFTVVACNAEDGSTKYFSKSDVGYDNFDILKASSAVPVACEPYEIDGVPYYDGGIADPIPVQKAIDDGYDRIVVILTRPKDTVREQKRDIGPARILKRSHPEAAEKLLNRYQTYNDEVALSKEYEQDGRVLILAPESLYGLNTLSKSFEGLERMYRAGYAAAEAIPAFLKS
>NZ_AP012325.1|WP_003834208.1|1502497_1503436_-|isoaspartyl-peptidase/L-asparaginase
MNEAALPQSTVHIAQADPDGILLVIHAGAGNRGKKDTPERRAQVEQDLNRALEAGYALLEQGAPAEDAVCAAIRVMEDAPEFNAGRGAALTSEGIVSMDSCLMTGIDGEVGSACGLTTSKNPINVARAIKEKTKHVMFAKPGNDLLKEWGIELCDSDYFITPARQESLREAQSNGDEWEKHGTIGAVARDSSGNIAAGTSTGGITNQMPGRVGDSPLPGCGTYANNDSVAISCTGIGEAFVKEVAAHQVSDRVLYAKEEPIEAAKAALDGVARHHGDGGMIVVPAHGEGAMVFNSEMMNCGWKSPKGSYVQS
>NZ_AP012325.1|WP_003834211.1|1500695_1502369_+|ABC-transporter-substrate-binding-protein
MLTLKENEMKNNAFRRLLAMAAAGAMLTSIAACGSSSGDDTASNGSDSTSLISVNNSEPQNGLIPSDTNEMGGGKVIRYLFEGLVSFDAKGKQHLEVAESITPNEDATKYTIKLKEGWKFTNGEAVTAHSFADTWSFAANVKNAQKTASRFSTIKGYDELQDPNVDPKATLSGLSTPDDYTLVVELNKPDSVFPTKLAHQSMFPLPSVAFKDIKKFGQAPIGNGPYKFKSWSHDKNIIIVPNKDYKGSRKVSNKGIEYRVYTNEDSAYSDVLSGNLDVMDQIPQSAVKTFRQDSGVIAYSQAGSSFQSFVIPERLEHFGNDEEGQLRRQAISMAINRDQVVKKVYNNTKTPATDFTSPLVPEYVKELEQNGGNLKYNASKAKELWKKANAIKPWSGNFRIAYNADGGHKEWVDAVCNQIKNTLDIDAAGEPYATFSDVRNQVTNRTIKTAFRAGWMLDYPSAEDYLNPLYASSSADGHGSNDGDYKSAEFDELLNAALAQTDVKKRTEDFTKAQEVLAKDLPVIPLWNDNVAAASATNVKNVSFDYTNLPTYNTITK
>NZ_AP012325.1|WP_033512504.1|1499552_1500329_+|glutamate-racemase
MTSTAPIGVFDSGLGGISVAREIRRDMPNERVLYFGDSANAPYGTKSPEQVRKLSDAIVKRFVEQGVKAVVIACNTATSAAANELRDKYDIPIIGMEPALKVACDRGHGNRQRVIVAATPLTLRERKFAVLMDRFKTDHTIFPEPCPGLVEIVEHGQLDDHDVVMHTLHQYFDQYDLSTIDSVVLGCTHFVFYRDYFRELLPDTAAIIDGNEGTVRHLGVVLESLGKLSPEDAEGGIELANSDTSAQIAQLAQSLLGR
>NZ_AP012325.1|WP_003834216.1|1498554_1499454_-|diaminopimelate-epimerase
MSIPSIVYKAHATGNDFVVYLDAEGTYEPTADEVRFLCDRHFGIGGDGLIRLTHPQAVSDLNDKQIAVCAVGNADWFMDYRNADGSLAEMCGNGTRAITLFAQRQGIAGQPGGEPFRLGTRAGVKVLTSLGDVPALGNDVFQVEMGSWKCGDFDGYEVTIPGTAGSARGTFVDMGNPHVVAVIEDAFSSLPTVEQLDLVTKPVVSPQIESDQNVEFVRIDEQSEGDNEGSATMRVNERGCGETLSCGTGLCATAITLRAKTGIDHWTITVRGGTLRVDVTDDDVKLTGSATIVGKIELL
>NZ_AP012325.1|WP_162014318.1|1497734_1498400_+|vitamin-K-epoxide-reductase-family-protein
MSDFPGELVADATLDDAYTKPRGWRHGATWTYLIMLAASAVALVVSFVLSAETLKLARNPGQKLSCDVNAVMSCSTVAESWQAEIVRFAGLSFPNAFFGIAAESVFVTIAVIGLTKVAVPRWFALCTWLGGLAALAYSYWLTSQSLFVINALCPWCLCLMFSTTVQFMALSHATAVVQEIPAKGAGVRTYYRLNYDLMVDAVWIVALIVIILVKDGPMLFS
>NZ_AP012325.1|WP_003834183.1|1510649_1511009_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MVVIVLTACPVGLRGDLTRWLLEISPGVFVGHLDARVREKLWERIVELSKNGRAIMVYSARNEQHLAFKVHGAEWSPTDCEGLELVKRPSGPKEVSFGGALHRGWSNASKYRQAKKYSN
>NZ_AP012325.1|WP_033512546.1|1511002_1511950_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MGTPPPEISELVRAEDRLSFAYFEHCTIGRDDNAITATDSTGVTHIPAATLSVLMLGPGTRVTHQAMTVIGENGATVIWVGERGIRMYAFGKPLTHSSVLLQRQAALVSNTRKRLNVARQMYQMRFPGEDVSGLTMQQLRGREGARIRRVYRECSARAGVEWDKRTYDHDDFMAGSEINKALSAAHTCLYGLAHAAIVALGCSPGLGFVHVGHERSFVYDIADLYKADLSIPVAFETAATHPEDIGSAIRHSIRDAVYDLSLLRRMVKDIRVLLGESSSDGVRGAEDHVGLWDERLGEVSAGKSYADDEWGYEEW
>NZ_AP012325.1|WP_003834179.1|1512039_1512741_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MFISRIPLNKARYGARQLIGSPYKLHAAVECAFPPNAVRNNDEGRILWRLDTSVNDNAVWLYVVSPEKPDFMHIVEQAGWPTHVEWETKNYEPLLERIAKGQQWHFKLRANPARKAKEDKGRRHRSDGIVGKVQGHITVDQQLQWLIDRSASHGFTILNDQNDQPDVVVKERHKENFKRADATVTLVTAVFEGRLEVTDAELFRKALCQGIGRAKGFGCGLLTIAPDLNNKDE
>NZ_AP012325.1|WP_033512520.1|1512763_1513513_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSVLLLQLAGPLQSWGDSSRFVRRETRSEPTKSGVIGMLASAQGRTREDPIEDLLGISFGVRVEQRGRVIRDLQTEKSLTRKRNSRKFDKEMPLTYRYYLADACFLVALGADRSVLEMLDEAIHSPKWPLYLGRRSCPPNYPLSLGIHDEYEDIRQALNSETWHASEWYRRRYRYPDLEIVCDAEKGENITTQSDLPLSFSREGRRYANRAVHRYRIPNPDKPVEKGAKDSIRPPSFESTGESDPMNFI
>NZ_AP012325.1|WP_003834175.1|1513531_1514647_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MFVDIHCLQQVPPSNINRDDTGSPKTAYVGGALRARVSSQSWKRAMREMFSSKLDSSKLGKRTKSAVALISSVIAEKRPDLVEESKSLAEKVLAATGVKVKASDRAGADKGSSATEYLIFIANREVEQLADIAITAFDEGKDPSKMKKEVAAVFHGEQAIDIACFGRMLADAPDLNTDASAQVAHAFSIDQITPEYDYFTAVDDCASDDNAGAAMIDTIGFNSSTLYRYATVNVDALKDQLQDANAAVEGVAAFVDAFIKSMPSGKQNTFANHTLPEDIVIVLRDSQPISAADAFEDPIKRKDGISVSRQGIERLGDRLNEIRINYGEEPVKAWHVVSGGSVHSLDEWSEQVTLPELEQGLRETLSAAYSA
>NZ_AP012325.1|WP_047750756.1|1514696_1515344_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MASLSRYDKAKAVGKYAASLVYDVQREYVSGSGSSARGRARLSRLHRDLDGVSPSWMLIGDELFSNWPAELDAPADNSPEFERQSNAIRAALGLYAVHQRSKKQGVAQKFQSNPSLRMTFGRACRRIEPDTDNAKGILRRLRVAENAPDFNGIVRSIRALIMLMRNTDIQVDYGSLASDLYLLQFSDSRGPVFQRWGRDYYAKLPSTQNGQKTDK
>NZ_AP012325.1|WP_003834171.1|1515381_1517034_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDRNFSLLDDGWIPVSYVDGHPDEVSLRRLFEDAWKIKEIRGDIPQQAIAILRLALGILYRAYYVENPSEEQMRDMWDDIFRIGHFDLDILEDYFDEWGDRFFLFGDRPFFQVSGLEYVGQKPYDPVSEMIADMPKPEKYLFAMRGLGTTDTLSLPESARWLVYLQSFDTAGIKTPVKGNTHINKGKIYPLKGFLGTGWLGGVGGVYAEGANLFETLMLNWVLYDDRYDSEYYRLFGNTNDIPVWEKNEVPSADMDDQNSFAGPVQAMTWQSRRIRLVPNEDCTRVIGVVNCYGDAVTQYNTDGFEKMTAWRRSIPQQKKLGLPVPPHMPVTHDASKALWRGLEPILCVGDDGDFRPGIIRWLEEIRTEVLDSEEHVLNMVTIHAQGMTYGTQSSVFETGIDDKLSLSMVMFRHDYAGIAAVVDVVKSTDKAVTALTMFVRNLRSAAGDHSGKTQEIADQIRESAYADLDLLFRDRLANFDESQDPVTYSNAWLDEVHRLLLTMGRDYLSQSPVPVFEEHESGRFGVMSAALAQLLFRGSLNKELGRISD
>NZ_AP012325.1|WP_033512522.1|1517254_1520374_-|CRISPR-associated-helicase/endonuclease-Cas3
MCDGEIELSDRAKSLWGKTNRVDDTEWLPLYVHMADSAAMAVRIWDTWVPYGTKSIISRDLGNDDDLARKLMIFLAGVHDIGKATPVFQAKPISFGPDAESLAWKPEQAGLPMIAGLRDTSHPTHPIAGQVILERYFSLVHKWGERESRQYACVVGGHHGTPPDKSKLESARLGKTESGLDSEVWTTTQNELIEFIAGTVGIGDEEWKLLSKKRFSAQSAVLATGLVIIADWIASNSDADMFPLVRVHPLWDDDEPFGMTERKYDDIQSWSGLQRRAERAWACVQLPHAWKPANIPSSCQDLFSTRFRLPEGAQPRPVQEQAVRVARDTDARGLLIIEAPMGEGKTEAALAAAEILAQRTGRGGICVALPTMATTDAMFSRVHRWLDALPSCDSTDEKTVWLAHGKAKLNDDFQGIIAASRRHFSSVGQDDTDEPYSRKHGEISPETVVSDWIWGRKKGALANFLVCTVDQVLMGALQMKHVVLRQLAMANKVVIVDECHAYDAYMREYLKMALEWLGSTRTPVILLSATLPESQREEMAKAYLKGWRNSKLELPSEAKRGGIQELKRRQLAAKNEKVYVNEPKLVQERGISSVHKVSSAYPVLTYTSDTEIKHMDVKPSGRSMNVRCQIVDDSDEALISLLDRLLEDGGCVGVICDTVGRAQHAAKLLSDYFGSEYVKLTHSRFMDIDRMSNEAELRQLLGPDSTVGNGERPQRMIVVGTQVLEQSLDIDFDTLVTDIAPVDLIMQRLGRVHRHRRGNNECDRPSLLREAACYIRGIAFWNDNGPEFAKGVDAVYDVASLMESLAVLELTGSSAFCTQCLPKDIARTVRNAYGNDVRSLVPTAWNMQYDKGCEERANKQEKKRADAHSYLIQSVAVMNRKRSLVDWFSPQIDETDDDKGQRAVRDTQDTVEVMLLCKHDGEVCLLPWIGDKRNGIERGAVIPVDTVPCDDVAKVAAQCSVRLPVALCAHGRIDSLIAALEEGCGTEAAYWQESPWLAGKLALFLHEDAEKHLSSDELCGYTISYSRGDGLTYTKKEDN
>NZ_AP012325.1|WP_003834167.1|1520659_1523971_-|mupirocin-resistant-isoleucine--tRNA-ligase
MSENNVYPKAAAGEQSANVAPNPSFPKLEESVLDYWEKDDTFQKSIERRPSGDHSQNEFVFFDGPPFANGLPHYGHLLTGYAKDVIPRYQTMKGHKVNRVFGWDTHGLPAELEAQKELGIDSVDQVKEMGIDKFNDACRASVLKYTNEWKDYVHRQARWVDFEHGYKTLNIPYMESVMWAFKQLYDKGLAYQGYRVLPYCPKDQTPLSAHELRMDADVYQDRQDTTVSVAVKLRDEEDAYAVFWTTTPWTVPTNFAIVVGADIDYVEVRPTEGKFAGKKFYLGKPLLGSYAKELGENYEIVRELKGAEMEGWRYYPVFPYFAGDENAIEGKVPGPEGYQIFTADYVDTVEGTGLVHQAPYGEDDMNTLNAKGIKSVDVLDAGCKFTALCPDYEGMYVFDANKPILRNLRAGDGPLERIPEDQRAILFQEKSYVHSYPHCWRCATPLIYKPVSSWFVSVTKIKDRLLELNQEINWIPGNVKDGQFGKWLANARDWSISRNRFWGSPIPVWVSDDPKYPRVDVYGSLDELKADFGDYPRDKDGNVNMHRPYIDELTRVNPDDPTGKSHMHRITDVMDCWFESGSMSFAQYHYPFENKETFEQHFPCDYIVEYIGQTRGWFYVQHIMATALFDKPAFKNVICHGIVLGSDGQKMSKHLRNYPDVNGVFNDFGSDAMRWFLMSSPILRGGNLIVTADGIRDTVRQVMLPVWSSYYFFTLYANAANNGAGFDARALHADEVAALPEMDRYLLARTRRLIEKTQHSLDDFLISDACEAVSDFIDMLTNWYIRNNRDRFWNEDANAFNTLYTVLEAFMRVIAPLAPMEAEAVWRGLTGGESVHLADWPFLADEQTGEASELGRVLVDDPALVDAMEKVREVVSGTLSMRKTKQIRVRQPLSKLTVVVENTAAVAAYDEILKSELNVKNVELCTLEDAEAQGLKIINELRVNARVAGKRLRKDVQFAIKASKSGAWHVNAEGAPVCETPNGEIVLEEGEYELINSVEEKNAEEAANSVSAALPTGGFVILDTELNDDLIAEGYARDVIRAVQDARKAADLQISDRIALKLVVPAEDVAKVEQFKKLVSSETLATSFEVTAGDELNVEVAKA
>NZ_AP012325.1|WP_003834166.1|1524324_1525335_-|LacI-family-DNA-binding-transcriptional-regulator
MATIKEIAQRTGFSQATVSRLLNGDPTLSVREGTRRKIIQASEDLGYSMQTKRIVVPHKVALLDNEESEEALRDSYYTDLRSALERNAEQQRMEMTVFHDLDDMIARSSKFDGFMAIGADRISEKDLGRLHEAMPYGVFIDVNPAPNLFDSVQPDLQQTIHDAVAACAAKGMKRVGFIGGKGCLMNFYEVDEENRATYFRRETRRFGIQSDGLVYSDGLFTVSNGRALGERFVHDHNGVLPDAVIVAADVIAVGVLQAFNAVGVLVPRDISVISINNQTISQLTSPPLSTFSIDQNELARVATLALGDAISGKRTIRQHAYLSTSLVVRDSFVPAK

Crispr_ID: NZ_AP012325_4

• CRISPR_ID: NZ_AP012325_4
• CRISPR_location: 1869171-1869301
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NZ_AP012325_4

Consensus_repeat	Method
GTCCCAAATTCCTCCACTCACTGGA	CRISPRCasFinder

spacers of NZ_AP012325_4

>4.1|1869196|28|NZ_AP012325|CRISPRCasFinder
GGAATCCTCCCGCTGCCAAGCCTCTCAC
>4.2|1869249|28|NZ_AP012325|CRISPRCasFinder
ATAACCAGTACGCCCACAGGCCTTCCAC

CRISPR arrays and Neighbor proteins around NZ_AP012325_4

CRISPR arrays

The CRISPR arrays of NZ_AP012325_4

>merge|NZ_AP012325|4|1869171-1869301|CRISPRCasFinder
GTCCCAAATTCCTCCACTCACTGGAGGAATCCTCCCGCTGCCAAGCCTCTCACGGTCCAAATTCCTCCACTCACTGGAATAACCAGTACGCCCACAGGCCTTCCACAGTCCGAAAACCTCCACCCACTGGA

>NZ_AP012325|4|4|1869171-1869301|CRISPRCasFinder
GTCCCAAATTCCTCCACTCACTGGA	GGAATCCTCCCGCTGCCAAGCCTCTCAC
GGTCCAAATTCCTCCACTCACTGGA	ATAACCAGTACGCCCACAGGCCTTCCAC
AGTCCGAAAACCTCCACCCACTGGA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP012325.1|WP_003833941.1|1880640_1881432_-|HD-domain-containing-protein	unknown	unknown	gnl|CDD|129396
NZ_AP012325.1|WP_003833935.1|1885043_1886000_-|TatD-family-hydrolase	unknown	unknown	gnl|CDD|238635
NZ_AP012325.1|WP_003836656.1|1867068_1867830_+|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|238045
NZ_AP012325.1|WP_003833940.1|1881557_1882442_-|class-II-glutamine-amidotransferase	unknown	unknown	gnl|CDD|238889
NZ_AP012325.1|WP_003836675.1|1858625_1859618_-|glycosyltransferase	unknown	unknown	gnl|CDD|133030
NZ_AP012325.1|WP_003836695.1|1857151_1858297_-|DUF2142-domain-containing-protein	unknown	unknown	gnl|CDD|370749
NZ_AP012325.1|WP_033513194.1|1888863_1891029_-|glycoside-hydrolase-family-127-protein	unknown	unknown	gnl|CDD|226063
NZ_AP012325.1|WP_003836671.1|1860465_1862280_-|hypothetical-protein	unknown	unknown	gnl|CDD|119376
NZ_AP012325.1|WP_003836699.1|1853949_1855980_-|glycosyltransferase	unknown	unknown	gnl|CDD|372656
NZ_AP012325.1|WP_003836657.1|1865792_1866971_-|DNA-(cytosine-5-)-methyltransferase	unknown	unknown	gnl|CDD|365904
NZ_AP012325.1|WP_003836658.1|1864862_1865780_-|DUF4928-family-protein	unknown	unknown	gnl|CDD|374468
NZ_AP012325.1|WP_003836663.1|1863575_1863938_-|hypothetical-protein	unknown	unknown	unknown
NZ_AP012325.1|WP_128805867.1|1860249_1860444_+|hypothetical-protein	unknown	unknown	unknown
NZ_AP012325.1|WP_003833943.1|1879404_1880523_+|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl|CDD|213222
NZ_AP012325.1|WP_003833937.1|1882642_1884820_-|KUP/HAK/KT-family-potassium-transporter	unknown	unknown	gnl|CDD|376906
NZ_AP012325.1|WP_033513196.1|1886092_1888543_-|alpha-galactosidase	unknown	unknown	gnl|CDD|269892
NZ_AP012325.1|WP_003833920.1|1891912_1893700_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224055
NZ_AP012325.1|WP_003836697.1|1856166_1857081_+|hypothetical-protein	unknown	unknown	gnl|CDD|227588
NZ_AP012325.1|WP_003833945.1|1878082_1879408_+|ABC-transporter-permease	unknown	unknown	gnl|CDD|376899
NZ_AP012325.1|WP_033513206.1|1875507_1877874_-|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_AP012325.1|WP_003836656.1|1867068_1867830_+|helix-turn-helix-transcriptional-regulator	gnl|CDD|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.0047071
NZ_AP012325.1|WP_003833940.1|1881557_1882442_-|class-II-glutamine-amidotransferase	gnl|CDD|238889	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.	1.14165e-42
NZ_AP012325.1|WP_003836697.1|1856166_1857081_+|hypothetical-protein	gnl|CDD|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	4.23079e-14
NZ_AP012325.1|WP_003836675.1|1858625_1859618_-|glycosyltransferase	gnl|CDD|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	9.55125e-64
NZ_AP012325.1|WP_003836671.1|1860465_1862280_-|hypothetical-protein	gnl|CDD|119376	cd06414, GH25_LytC-like, The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.	3.34896e-68
NZ_AP012325.1|WP_033513194.1|1888863_1891029_-|glycoside-hydrolase-family-127-protein	gnl|CDD|226063	COG3533, COG3533, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_AP012325.1|WP_003833945.1|1878082_1879408_+|ABC-transporter-permease	gnl|CDD|376899	pfam02687, FtsX, FtsX-like permease family. This is a family of predicted permeases and hypothetical transmembrane proteins. Buchnera aphidicola LolC has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both LolC and Streptococcus cristatus TptD have been shown to require ATP. This region contains three transmembrane helices.	1.11444e-09
NZ_AP012325.1|WP_003836699.1|1853949_1855980_-|glycosyltransferase	gnl|CDD|372656	pfam13641, Glyco_tranf_2_3, Glycosyltransferase like family 2. Members of this family of prokaryotic proteins include putative glucosyltransferase, which are involved in bacterial capsule biosynthesis.	8.80083e-37
NZ_AP012325.1|WP_003836657.1|1865792_1866971_-|DNA-(cytosine-5-)-methyltransferase	gnl|CDD|365904	pfam00145, DNA_methylase, C-5 cytosine-specific DNA methylase.	3.00581e-46
NZ_AP012325.1|WP_003836658.1|1864862_1865780_-|DUF4928-family-protein	gnl|CDD|374468	pfam16280, DUF4928, Domain of unknown function (DUF4928). This family consists of uncharacterized proteins around 330 residues in length and is mainly found in various Bacteria species, such as Enterobacteriales, Clostridiales, Actinomycetales and so on. The function of this family is unknown.	3.15213e-55
NZ_AP012325.1|WP_003833937.1|1882642_1884820_-|KUP/HAK/KT-family-potassium-transporter	gnl|CDD|376906	pfam02705, K_trans, K+ potassium transporter. This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP), yeast (HAK), and plant (AtKT) sequences as members.	0
NZ_AP012325.1|WP_003833943.1|1879404_1880523_+|ATP-binding-cassette-domain-containing-protein	gnl|CDD|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	8.87845e-31
NZ_AP012325.1|WP_033513196.1|1886092_1888543_-|alpha-galactosidase	gnl|CDD|269892	cd14791, GH36, glycosyl hydrolase family 36 (GH36). GH36 enzymes occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-galactosidase, alpha-N-acetylgalactosaminidase, stachyose synthase, and raffinose synthase. All GH36 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. GH36 members are retaining enzymes that cleave their substrates via an acid/base-catalyzed, double-displacement mechanism involving a covalent glycosyl-enzyme intermediate. Two aspartic acid residues have been identified as the catalytic nucleophile and the acid/base, respectively.	7.11778e-81
NZ_AP012325.1|WP_003833920.1|1891912_1893700_-|ABC-transporter-ATP-binding-protein	gnl|CDD|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.5571e-169
NZ_AP012325.1|WP_003833941.1|1880640_1881432_-|HD-domain-containing-protein	gnl|CDD|129396	TIGR00295, Uncharacterized_protein_MJ0778, TIGR00295 family protein. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters. [Hypothetical proteins, Conserved].	6.10817e-14
NZ_AP012325.1|WP_003836695.1|1857151_1858297_-|DUF2142-domain-containing-protein	gnl|CDD|370749	pfam09913, DUF2142, Predicted membrane protein (DUF2142). This domain, found in various hypothetical prokaryotic proteins, has no known function.	1.63981e-12
NZ_AP012325.1|WP_003833935.1|1885043_1886000_-|TatD-family-hydrolase	gnl|CDD|238635	cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.	1.62558e-78

Protein sequences

>NZ_AP012325.1|WP_003836656.1|1867068_1867830_+|helix-turn-helix-transcriptional-regulator
MTKLSDAVSASNLDSYELARRSNVSEKRLNGYLSGRHSFSRAPLEDAVAIANALGGRIEDYMEDAAEDGEAEKLDDRLRLQLFLDSVDEYELIMKNVGRPQTVTIGGSGEKTEKRYSQLIVEGMLLRKYYSSDEVQLAKVIDSFRRLIPDDASPDVLHTVDLLEKDTPSQGNKSQIVFSNADGSYSSSVDLLFDVLYGITLHGDPDRIQRLARWPITAQCLALYESNVERRKGVVTVRQYIDLAIKDGLFALD
>NZ_AP012325.1|WP_003836657.1|1865792_1866971_-|DNA-(cytosine-5-)-methyltransferase
MNDNRTHTATGKACPQALEFFAGIGLARLGLEESGFQVEWSNDIDSAKCEMYRNNFTDTPGHTLVEGDMSELSGDDLPHDASIAWGSSPCTDLSLAGTRTGLNGKQSGAFWQYVRLLEELGDSRPPIAILENVNGLATSHSGEDLAAAVHAFNVLGYSVDVLSIDTRRFIPQSRPRLFLVGLQNPPSAEQFDSSLRPDWLQQVFADTSLRTHRAPLPEPPSPLMSGLNMYVENMADDDERWWDAERTAKFLDSLSPVQTARVETLRNETTVSYRTAYRRTRNGKAVWEVRADDISGCLRTARGGSSRQAIIRMGNGQAAVRWMTPREYAALMGAAHYNITGLRPNQVMFGFGDAVSVPVVEWLGKHYFMPALNNTLGKDLYVEQTLLSNHTA
>NZ_AP012325.1|WP_003836658.1|1864862_1865780_-|DUF4928-family-protein
MDLTPIDDFRKSHQVNTKGALAAAIQLNRFFSADTLPIDASDYHTNKEGQVKGISKDNCQKILAEYGITRLLAAEGGRTSRGTMALMHDYAELINELRPTAEQFTEIEQYWVKRIRAFFTSKPFKLESDNSLSVDAAVEHLLQQAAQRQKENPGTMYVGTVLQHLVAAKLTIVAPEVEINGASVADDPTGRGGDFNVGDTAIHCTTAPASLLMDKCQRNIKAGLHPIIITVRDRVKTAWDLASDMGFENRLEVWDLQSFLSSNVHEHGHFTNAARRETLSRLVKAYNQIIDEHESDPSLHIEYNG
>NZ_AP012325.1|WP_003836663.1|1863575_1863938_-|hypothetical-protein
MAESDDELDIRRELDTRDSLASMAHYHVSSPSAITTQVLPPSFIPTATGRVRPVTGAFPAIQSDEQEKQSQLGRSVRSVRSLAAGSLRKSQDSNADGNDDDNGNNGITPRMASSAPHYVD
>NZ_AP012325.1|WP_003836671.1|1860465_1862280_-|hypothetical-protein
MVSPHHVLKIATALSAVALTASVAVTPAYALQDIAIEDAVAQRGAVTADNGVVMQSDDQSDDQTGDQQSQDSMPDNPNAKLPGTVSDEISDDATVVSEDLAVTPEGEVKNIETGETVTDATLVGTQDQQPDPLAKTNGESFIPVSAEDVKNAVADANVQLSKFESNEYGAHWGTYNNTKAFFDYQNNLFVQQAKGVIDVSEWQGDIDWAKAKADGVEGVIIRLGYGEGNNADKKAQRNISECKRLGIPFGIYWYSYADTPSIAKEEGADVVAKLKQFGVNASDLAYPVYYDLEKWTWEGHQPPTDPNVYNDIVNNWYSALQSAGYKNLSVYSYTSYLQGPLKHADIYAKTTWVAQYGARMGFDSFPTDSRGWQYTSSGKVDGISGNVDMNAFGNKAYVNGGHWVTKNGQKYWWDSDGSLARSKEIYDPESNAWYWIDSDGTMAHDKDVYLRSNGGKWVRYDSNGHMIKGEDFRYGVWYNFDFTTGAMSKGMTYLSNGNKWVYYDMVTGKMAHGEAYLNFDKEHSGWYLFDNITGARCTGDIFIRANGGKWVRYDQKTGKMVKGLQKQNGLWYYFDPVTGAMAHGNTWVPQWQAWHYFDSVTGRG
>NZ_AP012325.1|WP_128805867.1|1860249_1860444_+|hypothetical-protein
MPSSPTNREDGIWVRFDENGNLRFRIIQRIQSTKISHDRQHSRHYYESGWKIHHFPAESIKQYD
>NZ_AP012325.1|WP_003836675.1|1858625_1859618_-|glycosyltransferase
MTHDMETNKRGVQMRCEPTLAFVIPCFNEEAALHMTADVLKKKMIQLENSQAVARDSFVIFVDDGSHDKTWDVITSLHEKDPSLFRGVKLAHNRGHQNALFAGLMHALSMNVDAVVSMDADLQDDPNAVDDMVQEYLRGAEIVYGVRDNRETDTAFKRGTAHAFYSLMKWLGTETVPDHADYRLMSRAALQALSQYKESNLFLRGLVPSLGFKTAKVYYKRGTRVAGESKYPLKKMVSFAIEGVTSFSTKPLTMITGLGLFSVFVGIVMLIYTLVSVFSGHAVAGWGSMMCSLWILGGFILLALGIIGEYIAKIYLEVKARPRYIVETTL
>NZ_AP012325.1|WP_003836695.1|1857151_1858297_-|DUF2142-domain-containing-protein
MAHWARILQIRAGNIIPVFSDEYHDWVVYRDHGKIITFNNTAVNAPFVYFPSLIVRGNFRVSSVATLICSATIIAVAIWVAKSYVNIILAIAILPTTFFSMIFPTADAVTNSYCLLFIAVVLCLYQRDDMLQYWHIALLCMMGALLGQVKITCFIIALFVLFLIPKAHGCVKKITLALPALTAFVSMWLWRAKTSQISVAPNRVPLEKTHELEGQLLQSSWKIFPLIGRSLFEPMDFDTEKINGQLVNSRRNLQFFTGTEEIQLPLIVMAPVLIAIMMLLIVHMSYKNINKLQVGLIVLIIVLYYVLSCVAMSITWVGNVDAYASGLQNRYFIPVLPLAALLFPNFIRDENINRRVLAISVAALTAFSYIAIAITYVIQWK
>NZ_AP012325.1|WP_003836697.1|1856166_1857081_+|hypothetical-protein
MMIMILRKKIIRSIAAITATLSMLALPIASANAEEIVSPPYPEYTGWVVQDGEHYWFDSGTMARSKEIYDPSSNAWYWLDADGTMARNKDVYQRSNGGKWVRYDSNGHMIKGEDYRYGGWYYFDQTTGAMAKGMKYIGSNGGKWVYYDWTTGKMAHGEQYVNYDAQHTGWYLFDQYTGAMFHGDTYIRSNGGKWVRYDRVTGKMVKGLHYQDGAYYYFDQTTGAMAHGRVWVPEWNSYATFDSVSGRYVSKDSGNNNPGNTGGENIRGRFCKKSEKGQQRIDGDGTLIVCECRNGNNTPHWYAK
>NZ_AP012325.1|WP_003836699.1|1853949_1855980_-|glycosyltransferase
MNQKASMKNAGANNTWETVMRVVYPVKDAEQTLPLYALDWTRPHVAETTLDSRIDMRRLEFGSMNQSTLQRLLRNAGSSAGVSCDSFEIAGRTSITLKNRGHMSGCAFFNAFPAAYWRRWTSVKTVRFEATVQGNSKISVFRSTGRGLIYPVSTKTTTASESETRVCIDVPMTGLMDGGYFWFDAESLDGSVTIADATWSVPREARTAKHETTLSIAITTFNRASYCMDQLRTIAGASALRERLDTVYCTDQGSDLVKDQKDFDEVADNLGEQLTYIQQANLGGSGGFSRGMYETAKAGDSDFVLLLDDDAISEPESILRAIQFSDYTVRPVLVGGGMFHLDNRTMLYTQGERINAQRMWMYPSKSMGYNHDFSVEPLRDSPDRHQRIDEDFNGWWMCLIPIAVVKKIGLSMPVFIKFDDIEYGLRAKKAGFPTVCLPGVAVWHQAWHDKDPARSWEEYFTERNRWLAALLTYPDRPPRMLVETLYGDASLGLRFVYSAMALHHMALRDILRGPQYLVDCLPTKLGEVRELRAKYPDAQSKESFEEFPEPAGEVEPPKNHPSTMKSRYKAAVGLIAKSFIKKANPDKATRPDAAIPARDTAWTWLAFDHVNSALVTTPDGNGVAWLKRDNKRFRKSMMEGYRLTRKILKNWKRLSAQYQSYGITSMETWARIFGDE
>NZ_AP012325.1|WP_033513206.1|1875507_1877874_-|hypothetical-protein
MVAALATMESMISEQITNTGSVMANHGSIQTPAQTQLRQNGSSNGGPSERKRDLRWRPAMLHPASLRVLLPWLTSIIGIASALCLVIAWFPSTVWNTPIVSSDAPAHYYFIRRLLDEGLGAALHLWPHNSFYPPLFHVCAYFVIKIAALFGVQCSIYAAFNITWIIASGVIFPSGMLVLCRYFLQRWNRGNPISRISQASSTPESSSVSEASNVSNQQVSSAVNRQYNATFDATFVLQNLIGLFVPVLAVSSVCHPYGLLNAGPLIAFGFATSLLPFLIAATLRLFDAIAAREHIVKWFVITAVAGVVCLVAHPRIAFTYALILVPFIVLRLPWKLILGAFIAMCVGAVAFVALMLTSFKSDRWANPASWFHSHQPFKNLWESISFCFTDGLDGFPAILFALLLIAGTVAAFVCAFRRAAVRSSDSFSAAVSTVAPAFSADADALVSDATVSLVSASDLPAASCSDAADVSLSAPSEPSRPRRNDRLRDVIALMAAFLLVTLVYACTVTLVGALPNIISSPWYRDENRIMTMLPLVALPLLVIGVNALSECVSVCAASASFVPSASSFSAKNSASSVPSLSFASAVSSVKNVSFASNWIGPIAAFLVIAILAVSAQIVCPSRTAARDAIIAHSSLNQSDPNEQLTEQKITVLRKVMERTGTQATIISDPLNGSMYAETLFNASMLYPIINARTDVPSVPFGKVETAFASGDGQQVLGTVCPLTDAPEYFLTMGDQAQSLQSFPYRAQYDSFHNEELIDAYVDGGTLVKVADYSQYGQGWALYRFGCAD
>NZ_AP012325.1|WP_003833945.1|1878082_1879408_+|ABC-transporter-permease
MFVLKNAWAALGRVKWRTALIALLALLVSFSAAVDLAVIRADDTANNETYQSQKATAVIRPTAQTKAKRDGADSSYTDKYLTWEKYSTYATAAQSNSVTFDYTLATSVPVRESKSLQAIAAKSDTSEDKTGGNLTLQAFYTLDAAKINDYGYYKVVKGKHLSYKTQSDGVLISQALADKNNLKVGDKVTVGNPSKASETYTFTVRGIYEYDSDVPEGNGSDAKYAKDNRENVIYTTYINFAKNGLDTTEATGWGVPNLNIVFSLANPSTYNKFVRLVKKAKLDTKTYEITSPSLTAYKKSIEPLDSAASSARIVLLAMTIVGGIALLALIVWAAVGGRRDEIGMAMITGVTKGRLGWQFMLETFMMTVPGWIIGLGAGALLAKPIGTAWAGGQAVTITSASVWNVIWYGLGACLVLGIVAFARVACFNLNQLFEERSEVTA
>NZ_AP012325.1|WP_003833943.1|1879404_1880523_+|ATP-binding-cassette-domain-containing-protein
MSDNMNDKNENIDKTMVDEAVVDKTAEAEASETVDDAAIGDIAADESSADSIESIDFTVVYDDDNAAVAGNDTADAAETADAANNAADDTNDDSDVAVNNANQVKETLALRSFDAPTALETHEAVKADSATSVSSQLDNEIKRNRKKDALFFKANPTFALDHVTVTNRKTGRNILDDLSLSFHAGATHAVLVDAEDREQHQALLATMVGMVRPDRGNVMHKSANLSDVEPVEMLGHRIGFIPQRFAFRPDLDAESNVLYAMDASNRNFLKPKPVTARELLKRVGFDEVTSGLAVGEVSELNQRRVAIARALSCEAEVIIADEPTAGLDADDAAVVLDLLKKFKRDADRKRAIIVVTTNPEVADAMDHSVELD
>NZ_AP012325.1|WP_003833941.1|1880640_1881432_-|HD-domain-containing-protein
MTTGYIPTLAQVDELHRKIAQSQAAYDLIHGHCVVVADIARRMARRQNALFTRRCTLPDDAPEKAGDFGLRLTQDGNGSESFGMLRIPSVPSSDGITGGTVPPRLIDEHLVVIGGLLHDIGTYFLLKQDGSDGGPLKFDGPNYVRHGLKGYEYLLNEGVDESIAQFARNHTGVGLTKETVESQGLPLPPADYVPMNLEQEVVMVADKYNSKSIPPKFLTAEAYARKAARFGESNRREWLRLLERYGVLDVTPLAEQYHMRIAE
>NZ_AP012325.1|WP_003833940.1|1881557_1882442_-|class-II-glutamine-amidotransferase
MCRLLGFAAAGSNTSLNGVLGMQAVRDFRDLSEIHNDGWGSALVTVPSESPYLRDGGAPTPETGTAIYKNTIAARHDPIFDELANTPARGGLWHLRLASSNLPLILENQQPFYANGLSFIHNGDISDDQGRNIITNRAFPVDPSIVQSTGGRSDSAIFFAVILQYIGFGFALDEAVAQAVRELRKSYPKSSYNCMIQSQDQFIALCAAGREVTSKRIVEIYDQYGRGNQAHDYRVMRYRTLGESEADQAAGQLKGVVVASSGFDQCAEDGWTRLENDQMIIASNRTGAFRVRSI
>NZ_AP012325.1|WP_003833937.1|1882642_1884820_-|KUP/HAK/KT-family-potassium-transporter
MANEPNEDEPLFHAATYTQAPKVSHKVLTKEERQVLIKQHEEKQQEAAHLDQVASKGPIGRWWSRLQSGPNRITPAMAIVALGVVYGDIGTSPLYTMQTFLNGQGGLAHANREAVLGVLSLVFWSITLITTVKYVLIAMRIDNKGEGGIFALYSLVRKYGAWLAIPAMLGGAAFLADSVLTPAVSISSAVEGLETLPAFEKLFTENKQLTLMITAAIILMLFSVQSRGTERIGKAFGSVVLVWFSFLAVVGLANLSQYWSVFAALNPVYGVRFLFSGHNAAGLAIMGTVFLSTTGAEALYSDMGHVGRGNIYFTWPFIKVALVLCYFGQGAWMLNHWDDSAYIRTHGLNPFFEMMTPSVRYVAVVLSVVAGVIASQALITGAFTMVSEATHLNWMPHLQVRYPARTRGQLYIPVVNVVLCVSTLLVLALFRDSEHISAAYGLALTITMITTTILLAVYIWHSGRRLGAIVFTVLFLAIQFMFFFASMAKFLHGGWFTMLLTFAILLVMYTWNEGTKLERAQRRHMQPAECLPVLKRLHDDDTIPYFADNIVYLTSDPETKRIDTDIFFSIFADHPKRARAWWAVSVETADEPFTREYSVENFGTDYMFRVRIRLGFKVSQSIPAYIHQIMNDLSKSGDLPRQESRYPKLDADPNIGPIRYVLIHKALMPESKVSQRGAISLEVKYAIRRLAGSPVKWFGLAPYNPLIEIQPLFLATQRPPRLKRV
>NZ_AP012325.1|WP_003833935.1|1885043_1886000_-|TatD-family-hydrolase
MSKHHRDRSWAPAPQPLPENAHVIDNHTHVASVVPFSQAMSHEAQEKGQPEVPVYSVDELLNQAQQVGVEGVIDCGCELPNLMTAIDMAREHSQTVHAAIAIHPNESVLHGHRGVPGPDGLPLKYKPWHDTSFEDAMAEVHRLAITYPNQVVAIGETGMDLFRTGEAAKELQREAFRAHIALAKELNLPMQIHDRDSHKEVIETLLADGAPERTVFHSYSGDAEMGEIARENGWYLSLSGTSSYKGNDGIRESARIVGLSHVMVETDAPYLSPMPYRGRTNAPYMIPYTLQSLANYLDKPLTEVAQATRKTTREVYGI
>NZ_AP012325.1|WP_033513196.1|1886092_1888543_-|alpha-galactosidase
MAAGMLNPLLPRQDGRLEWGNGVVSMLFDIAGDSPVRLCNVVGRGMIPIDGRLSDDGTPVVEKDPRPIVEVLAANTGSQDNRLALIATVAGSKLRFVSALASEPGQGSADPFRLEITQFASYADLEPKGREFESTASERDAAASAANPAPVTVCADPHEGLVVTSVFEAFPNLSAVRTHTRLQSAKQLPIEAVSSLNLTVPMRVNCGKVHRSNIFWGDAAWAVENDWRVRPLRDTQVRNRNQKINPGQSSSRFAMSSTSTWSTGVHEPAGIVQVEGSMRRARDFSVMWQIEHNGPWEWEVGEDDPGLHISAFGPEYQNHGWFTNLGEGNDFESVPVSFAIAAGDWQQAVAEMTLQRRALRVAKARELGRAEQFKRTQGLVVYNDYMNTLFGDPRIEKELPLIEGAASVGADIFCIDAGWYDSTDGGWWDMVGEWQASTNRFGDAGLRGLAENIRAHGMGLGLWLEPEVIGAKSPLASTLPDSAFFQRHGVRVCDSGRYLLDFRSPEAREHVTRTVDRLIDDFGAVFFKFDYNTIPGVGTDLNTESVGDGLLEHCRAYLDWLDDLRRRHPDVMIENCGSGAMRADYVQLSRLDLQSTSDQCDPLIYAAIAAGAGMTILPEQQGNWGYAQQEMDDETAVFTLATGVLGRLYLSGFIDRMTEPRLSLVRDAIALHRCVLADQQHMVPFWPSGLPDFDGDWLTVGLRHVETDMCDEHVLGCDASNGQNADPSNRQNDQQIQQEDKPDYIIVWRRGGTPSVNIPLEAGRTIEQVFPNPDEPDHAPDAEPWTIERMDPETVRLNATTSKRPSARIFAIRRRG
>NZ_AP012325.1|WP_033513194.1|1888863_1891029_-|glycoside-hydrolase-family-127-protein
MTDIHNRHSHPIELRDATVTDPFWAAEQELVRTAVIPYQWNALNDNVPGAAPSYCMHNFKAAAAQNAERHEQGKAFVPPKYTFRGFEALPEDPANPDPDKFYGFVFQDTDFSKWIEAVGYSLTHHPDAELEATADAAIDIVCAAQLDNGYLDTYYILNGMDRHFTNLKDHHELYCFGHLVEGAVAYYEATGKRKLLDAACRFADYIDSRFGTEEGRLHGYPGHEIAEMALVKLAAVTGETRYADLAEYFVWQRGQQPLYFALEDRRRAEEDGRNYEPREQNYTYYQADKPVTEQTEALGHAVRAAYFYSGVADVARITGEAALLESCETLWRNIVDRKLYITGGIGATHMGEAFSFDYDLPNDTAYSESCAAIALAFFARRMLEIQPKSEYADVMESALYNTTLAGMALDGKSFFYVNPLEVVPEACHRDERKFHVKPVRQKWFGCACCPPNIARMVESVQQYAYTVADDASTLYVHLYMGGVVSAKLGGSDVSLEVRAGMPWNGAGAITVTLPSSDEGQVPESFALALRLPAWAGGESAADSIHATGEKDSRITRTTRDGYLYLTGTWRDGDVIDFDFPMPVRMIAANPLVREDAGKVAFIRGPLAYCAEGTDNGDNLHLLHADAETIAADPDSVKVNEITFHAQAAAQDERGLGEVEPVDLPMVTLTIPAWRESSQGAADKSLYALWQPAQRQPTEVTLIPYFAWANRGETEMTVFLRS
>NZ_AP012325.1|WP_003833920.1|1891912_1893700_-|ABC-transporter-ATP-binding-protein
MAKRNTFREDEELEEQINLRDILRIGVYLKPYMSRIARILAVVVMMSCIAVVVPYLTKIMIDSAIPSKNLTLLGELTGLMAVLIVMYEFGLRYRTVEITRVGQLMLKDMRRDIFTHIQTLPFSYFDSRPHGKILIRVVNYVNTLSDTLSSGLINVISDAFTFLITLVVMFVVDWRLALFSLALFPFLIAWVLILQHFQRRAYQVLSNKQSNLNAFIHESIAGVKTTQTFAQETAQFKTFQEQQNDVRTSWMKAVHIQFLMWPGIQTISVMTIAFIYYVGVTGFGAVNVSTGVLIAFVGYANNFWNPVISIGNFYNQLITCSAYLERIFETLDVQPEIRNASDATELPPIEGRVDFNDVIFRYEPDGRNILNLVDLHVAPGSTVALVGPTGAGKTTIINLLSRFYDVAEGSVTIDGHDVRSVTLESLRRQMGVMLQDTFIFSGNVRENIRYGKLDATDAEIEAAAKAVHAHEFIMDLPNGYDTVVEERGSTLSAGQRQLIAFARVLLADPRILILDEATSNIDTRTEEALQAGLNHLLKGRTSFIIAHRLSTIENADMICYIDHGQIVEQGNHAELLAKRGAYYRLYDSQYAMIKV

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP012325_3	3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1508947-1508978	32	NZ_KY498540	Vibrio parahaemolyticus v110 plasmid pV110, complete sequence	49215-49246	6	0.812
NZ_AP012325_3	3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1508947-1508978	32	NZ_CP028346	Vibrio parahaemolyticus isolate R13 plasmid pVpR13_71Kb, complete sequence	32670-32701	6	0.812
NZ_AP012325_3	3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1508947-1508978	32	NZ_CP033136	Vibrio campbellii strain 170502 plasmid pVCZS, complete sequence	37513-37544	6	0.812
NZ_AP012325_3	3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1508947-1508978	32	NZ_CP045861	Vibrio owensii strain SH14 plasmid pVHvo, complete sequence	20878-20909	6	0.812
NZ_AP012325_3	3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1508947-1508978	32	NZ_CP020078	Vibrio campbellii strain 20130629003S01 plasmid pVCGX1, complete sequence	49501-49532	6	0.812
NZ_AP012325_3	3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1508947-1508978	32	NZ_CP021148	Vibrio campbellii strain LA16-V1 plasmid pLA16-2, complete sequence	20565-20596	6	0.812
NZ_AP012325_3	3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1508947-1508978	32	NC_025152	Vibrio parahaemolyticus strain 13-028/A3 plasmid pVPA3-1, complete sequence	48588-48619	6	0.812
NZ_AP012325_3	3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1508947-1508978	32	NZ_CP033146	Vibrio owensii strain V180403 plasmid pVOWZ3, complete sequence	59947-59978	6	0.812
NZ_AP012325_3	3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1508947-1508978	32	NZ_CP034571	Vibrio parahaemolyticus strain 160807 plasmid pVPWZ2, complete sequence	62641-62672	6	0.812
NZ_AP012325_3	3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1508947-1508978	32	NZ_CP022245	Vibrio parahaemolyticus strain PB1937 plasmid p1937-1, complete sequence	69958-69989	6	0.812
NZ_AP012325_3	3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1508947-1508978	32	NZ_CP034304	Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-5, complete sequence	27795-27826	6	0.812
NZ_AP012325_3	3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1508947-1508978	32	NZ_CP020036	Vibrio parahaemolyticus strain 20130629002S01 plasmid pVPGX1, complete sequence	48647-48678	6	0.812
NZ_AP012325_3	3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1508947-1508978	32	NZ_CP028145	Vibrio parahaemolyticus strain R14 plasmid pVpR14_74Kb, complete sequence	36553-36584	6	0.812
NZ_AP012325_3	3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1508947-1508978	32	NZ_CP034308	Vibrio parahaemolyticus strain 20151116002-3 plasmid pVPGX2015-2, complete sequence	17080-17111	6	0.812
NZ_AP012325_3	3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1508947-1508978	32	NZ_CP034293	Vibrio parahaemolyticus strain 20140722001-1 plasmid pVPCZ2014-3, complete sequence	11212-11243	6	0.812
NZ_AP012325_3	3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1508947-1508978	32	NZ_CP034297	Vibrio parahaemolyticus strain 20140829008-1 plasmid pVPGD2014-2, complete sequence	68478-68509	6	0.812
NZ_AP012325_3	3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1508947-1508978	32	AP014859	Vibrio parahaemolyticus plasmid pVP2HP DNA, complete sequence, strain: VPE61	181675-181706	6	0.812
NZ_AP012325_3	3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1508947-1508978	32	AP014860	Vibrio parahaemolyticus plasmid pVPE61a DNA, complete sequence, strain: VPE61	48556-48587	6	0.812
NZ_AP012325_3	3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1508947-1508978	32	NZ_CP034288	Vibrio parahaemolyticus strain 20140624012-1 plasmid pVPHB2014-2, complete sequence	4082-4113	6	0.812
NZ_AP012325_3	3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1508947-1508978	32	NZ_CP043423	Vibrio parahaemolyticus strain MVP1 plasmid pVa, complete sequence	46936-46967	6	0.812
NZ_AP012325_3	3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1508947-1508978	32	NZ_MH890610	Vibrio campbellii strain LMB29 plasmid pVCON1, complete sequence	41208-41239	6	0.812
NZ_AP012325_3	3.17|1509558|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1509558-1509589	32	NC_008738	Marinobacter hydrocarbonoclasticus VT8 plasmid pMAQU01, complete sequence	225260-225291	6	0.812
NZ_AP012325_4	4.1|1869196|28|NZ_AP012325|CRISPRCasFinder	1869196-1869223	28	NZ_CP032928	Agrobacterium tumefaciens strain 1D1460 plasmid pAt1D1460, complete sequence	87683-87710	6	0.786
NZ_AP012325_4	4.1|1869196|28|NZ_AP012325|CRISPRCasFinder	1869196-1869223	28	NC_003064	Agrobacterium fabrum str. C58 plasmid At, complete sequence	41398-41425	6	0.786
NZ_AP012325_3	3.9|1509069|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1509069-1509100	32	NZ_LR134456	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence	184881-184912	7	0.781
NZ_AP012325_3	3.20|1509741|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1509741-1509772	32	AP014720	Arthrobacter sp. Hiyo8 plasmid pHiyo8-1 DNA, complete genome, strain: Hiyo8	158679-158710	7	0.781
NZ_AP012325_3	3.21|1509802|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1509802-1509833	32	MN234216	Streptomyces phage Gilgamesh, complete genome	25833-25864	7	0.781
NZ_AP012325_3	3.9|1509069|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1509069-1509100	32	KJ680225	Uncultured bacterium plasmid PLAsvaD clone PLAsvaD-1, complete sequence	21117-21148	8	0.75
NZ_AP012325_3	3.21|1509802|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1509802-1509833	32	NZ_AP014686	Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6b, complete sequence	194761-194792	8	0.75
NZ_AP012325_3	3.8|1509008|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1509008-1509039	32	MG945394	UNVERIFIED: Microviridae sp. isolate 3504-1711, complete genome	1222-1253	9	0.719
NZ_AP012325_3	3.11|1509192|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1509192-1509223	32	NC_024355	Staphylococcus phage 6ec, complete genome	13535-13566	9	0.719
NZ_AP012325_3	3.11|1509192|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1509192-1509223	32	KF929199	Staphylococcus phage vB_SepS_SEP9, complete genome	8684-8715	9	0.719
NZ_AP012325_3	3.15|1509436|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1509436-1509467	32	NZ_CP045351	Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence	492340-492371	9	0.719
NZ_AP012325_3	3.21|1509802|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1509802-1509833	32	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	908167-908198	9	0.719
NZ_AP012325_3	3.21|1509802|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1509802-1509833	32	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	676373-676404	9	0.719
NZ_AP012325_3	3.21|1509802|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1509802-1509833	32	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	1218067-1218098	9	0.719
NZ_AP012325_3	3.21|1509802|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1509802-1509833	32	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	908174-908205	9	0.719
NZ_AP012325_3	3.21|1509802|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1509802-1509833	32	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	1179759-1179790	9	0.719
NZ_AP012325_3	3.21|1509802|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1509802-1509833	32	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	1179704-1179735	9	0.719
NZ_AP012325_3	3.21|1509802|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1509802-1509833	32	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	668337-668368	9	0.719
NZ_AP012325_3	3.1|1508581|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1508581-1508612	32	NZ_CP011808	Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-1, complete sequence	268921-268952	10	0.688
NZ_AP012325_3	3.9|1509069|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1509069-1509100	32	NZ_CP014516	Frondihabitans sp. PAMC 28766 strain SR6 plasmid 3, complete sequence	9997-10028	10	0.688
NZ_AP012325_3	3.17|1509558|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1509558-1509589	32	AP014858	Vibrio phage RYC DNA, complete sequence	15490-15521	10	0.688
NZ_AP012325_3	3.20|1509741|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1509741-1509772	32	NZ_CP025809	Sulfitobacter sp. SK025 plasmid unnamed1, complete sequence	47912-47943	10	0.688
NZ_AP012325_3	3.20|1509741|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1509741-1509772	32	NZ_CP032342	Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence	192450-192481	10	0.688
NZ_AP012325_3	3.20|1509741|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1509741-1509772	32	NZ_CP033321	Azospirillum brasilense strain Cd plasmid p3, complete sequence	626339-626370	10	0.688
NZ_AP012325_3	3.20|1509741|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1509741-1509772	32	NZ_CP033315	Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence	11176-11207	10	0.688
NZ_AP012325_3	3.21|1509802|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1509802-1509833	32	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	2117872-2117903	10	0.688
NZ_AP012325_3	3.27|1510168|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1510168-1510199	32	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	581284-581315	10	0.688
NZ_AP012325_3	3.30|1510351|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT	1510351-1510382	32	NZ_CP030761	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence	231396-231427	10	0.688

1. spacer 3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY498540 (Vibrio parahaemolyticus v110 plasmid pV110, complete sequence) position: , mismatch: 6, identity: 0.812

taggcttcagcgttaccaacacgaacgatgcc	CRISPR spacer
taatcgacagagttatcaacacgaacgatgcc	Protospacer
**. *  *** ****.****************

2. spacer 3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028346 (Vibrio parahaemolyticus isolate R13 plasmid pVpR13_71Kb, complete sequence) position: , mismatch: 6, identity: 0.812

taggcttcagcgttaccaacacgaacgatgcc	CRISPR spacer
taatcgacagagttatcaacacgaacgatgcc	Protospacer
**. *  *** ****.****************

3. spacer 3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033136 (Vibrio campbellii strain 170502 plasmid pVCZS, complete sequence) position: , mismatch: 6, identity: 0.812

taggcttcagcgttaccaacacgaacgatgcc	CRISPR spacer
taatcgacagagttatcaacacgaacgatgcc	Protospacer
**. *  *** ****.****************

4. spacer 3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045861 (Vibrio owensii strain SH14 plasmid pVHvo, complete sequence) position: , mismatch: 6, identity: 0.812

taggcttcagcgttaccaacacgaacgatgcc	CRISPR spacer
taatcgacagagttatcaacacgaacgatgcc	Protospacer
**. *  *** ****.****************

5. spacer 3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020078 (Vibrio campbellii strain 20130629003S01 plasmid pVCGX1, complete sequence) position: , mismatch: 6, identity: 0.812

taggcttcagcgttaccaacacgaacgatgcc	CRISPR spacer
taatcgacagagttatcaacacgaacgatgcc	Protospacer
**. *  *** ****.****************

6. spacer 3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021148 (Vibrio campbellii strain LA16-V1 plasmid pLA16-2, complete sequence) position: , mismatch: 6, identity: 0.812

taggcttcagcgttaccaacacgaacgatgcc	CRISPR spacer
taatcgacagagttatcaacacgaacgatgcc	Protospacer
**. *  *** ****.****************

7. spacer 3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NC_025152 (Vibrio parahaemolyticus strain 13-028/A3 plasmid pVPA3-1, complete sequence) position: , mismatch: 6, identity: 0.812

taggcttcagcgttaccaacacgaacgatgcc	CRISPR spacer
taatcgacagagttatcaacacgaacgatgcc	Protospacer
**. *  *** ****.****************

8. spacer 3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033146 (Vibrio owensii strain V180403 plasmid pVOWZ3, complete sequence) position: , mismatch: 6, identity: 0.812

taggcttcagcgttaccaacacgaacgatgcc	CRISPR spacer
taatcgacagagttatcaacacgaacgatgcc	Protospacer
**. *  *** ****.****************

9. spacer 3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034571 (Vibrio parahaemolyticus strain 160807 plasmid pVPWZ2, complete sequence) position: , mismatch: 6, identity: 0.812

taggcttcagcgttaccaacacgaacgatgcc	CRISPR spacer
taatcgacagagttatcaacacgaacgatgcc	Protospacer
**. *  *** ****.****************

10. spacer 3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022245 (Vibrio parahaemolyticus strain PB1937 plasmid p1937-1, complete sequence) position: , mismatch: 6, identity: 0.812

taggcttcagcgttaccaacacgaacgatgcc	CRISPR spacer
taatcgacagagttatcaacacgaacgatgcc	Protospacer
**. *  *** ****.****************

11. spacer 3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034304 (Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-5, complete sequence) position: , mismatch: 6, identity: 0.812

taggcttcagcgttaccaacacgaacgatgcc	CRISPR spacer
taatcgacagagttatcaacacgaacgatgcc	Protospacer
**. *  *** ****.****************

12. spacer 3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020036 (Vibrio parahaemolyticus strain 20130629002S01 plasmid pVPGX1, complete sequence) position: , mismatch: 6, identity: 0.812

taggcttcagcgttaccaacacgaacgatgcc	CRISPR spacer
taatcgacagagttatcaacacgaacgatgcc	Protospacer
**. *  *** ****.****************

13. spacer 3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028145 (Vibrio parahaemolyticus strain R14 plasmid pVpR14_74Kb, complete sequence) position: , mismatch: 6, identity: 0.812

taggcttcagcgttaccaacacgaacgatgcc	CRISPR spacer
taatcgacagagttatcaacacgaacgatgcc	Protospacer
**. *  *** ****.****************

14. spacer 3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034308 (Vibrio parahaemolyticus strain 20151116002-3 plasmid pVPGX2015-2, complete sequence) position: , mismatch: 6, identity: 0.812

taggcttcagcgttaccaacacgaacgatgcc	CRISPR spacer
taatcgacagagttatcaacacgaacgatgcc	Protospacer
**. *  *** ****.****************

15. spacer 3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034293 (Vibrio parahaemolyticus strain 20140722001-1 plasmid pVPCZ2014-3, complete sequence) position: , mismatch: 6, identity: 0.812

taggcttcagcgttaccaacacgaacgatgcc	CRISPR spacer
taatcgacagagttatcaacacgaacgatgcc	Protospacer
**. *  *** ****.****************

16. spacer 3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034297 (Vibrio parahaemolyticus strain 20140829008-1 plasmid pVPGD2014-2, complete sequence) position: , mismatch: 6, identity: 0.812

taggcttcagcgttaccaacacgaacgatgcc	CRISPR spacer
taatcgacagagttatcaacacgaacgatgcc	Protospacer
**. *  *** ****.****************

17. spacer 3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to AP014859 (Vibrio parahaemolyticus plasmid pVP2HP DNA, complete sequence, strain: VPE61) position: , mismatch: 6, identity: 0.812

taggcttcagcgttaccaacacgaacgatgcc	CRISPR spacer
taatcgacagagttatcaacacgaacgatgcc	Protospacer
**. *  *** ****.****************

18. spacer 3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to AP014860 (Vibrio parahaemolyticus plasmid pVPE61a DNA, complete sequence, strain: VPE61) position: , mismatch: 6, identity: 0.812

taggcttcagcgttaccaacacgaacgatgcc	CRISPR spacer
taatcgacagagttatcaacacgaacgatgcc	Protospacer
**. *  *** ****.****************

19. spacer 3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034288 (Vibrio parahaemolyticus strain 20140624012-1 plasmid pVPHB2014-2, complete sequence) position: , mismatch: 6, identity: 0.812

taggcttcagcgttaccaacacgaacgatgcc	CRISPR spacer
taatcgacagagttatcaacacgaacgatgcc	Protospacer
**. *  *** ****.****************

20. spacer 3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043423 (Vibrio parahaemolyticus strain MVP1 plasmid pVa, complete sequence) position: , mismatch: 6, identity: 0.812

taggcttcagcgttaccaacacgaacgatgcc	CRISPR spacer
taatcgacagagttatcaacacgaacgatgcc	Protospacer
**. *  *** ****.****************

21. spacer 3.7|1508947|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH890610 (Vibrio campbellii strain LMB29 plasmid pVCON1, complete sequence) position: , mismatch: 6, identity: 0.812

taggcttcagcgttaccaacacgaacgatgcc	CRISPR spacer
taatcgacagagttatcaacacgaacgatgcc	Protospacer
**. *  *** ****.****************

22. spacer 3.17|1509558|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NC_008738 (Marinobacter hydrocarbonoclasticus VT8 plasmid pMAQU01, complete sequence) position: , mismatch: 6, identity: 0.812

cgtaaggaaaccttcttcaaagacattcaaga	CRISPR spacer
caaatggaaaccttcttcaaagacctgcaagg	Protospacer
*. * ******************* * ****.

23. spacer 4.1|1869196|28|NZ_AP012325|CRISPRCasFinder matches to NZ_CP032928 (Agrobacterium tumefaciens strain 1D1460 plasmid pAt1D1460, complete sequence) position: , mismatch: 6, identity: 0.786

ggaatcctcccgctgccaagcctctcac	CRISPR spacer
tgcagcctcccgctgccaagccgctcgg	Protospacer
 * * ***************** ***. 

24. spacer 4.1|1869196|28|NZ_AP012325|CRISPRCasFinder matches to NC_003064 (Agrobacterium fabrum str. C58 plasmid At, complete sequence) position: , mismatch: 6, identity: 0.786

ggaatcctcccgctgccaagcctctcac	CRISPR spacer
tgtagcctcccgctgccaagccgctcgg	Protospacer
 * * ***************** ***. 

25. spacer 3.9|1509069|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134456 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence) position: , mismatch: 7, identity: 0.781

ttcgaccacaagggcgagacgctgcctgccca	CRISPR spacer
gtcgacctcaacggcgagacgctgcaggtcga	Protospacer
 ****** *** *************  *.* *

26. spacer 3.20|1509741|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to AP014720 (Arthrobacter sp. Hiyo8 plasmid pHiyo8-1 DNA, complete genome, strain: Hiyo8) position: , mismatch: 7, identity: 0.781

ccctggatgctgccgaccttgcctatagtggc----	CRISPR spacer
ccctggattctgccgaccttgcccg----ggcgtct	Protospacer
******** **************..    ***    

27. spacer 3.21|1509802|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to MN234216 (Streptomyces phage Gilgamesh, complete genome) position: , mismatch: 7, identity: 0.781

cgccctgccggcctcatcagcgacggc-cagca	CRISPR spacer
ggcccggccggactcatcagcgacaccgcggc-	Protospacer
 **** ***** ************. * *.** 

28. spacer 3.9|1509069|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to KJ680225 (Uncultured bacterium plasmid PLAsvaD clone PLAsvaD-1, complete sequence) position: , mismatch: 8, identity: 0.75

ttcgaccacaagggcgagacgctgcctgccca	CRISPR spacer
ttcgatcacaaggtcgagacgctggccatcgg	Protospacer
*****.******* ********** *...* .

29. spacer 3.21|1509802|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014686 (Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6b, complete sequence) position: , mismatch: 8, identity: 0.75

cgccctgccggcctcatcagcgacggccagca	CRISPR spacer
gttgccgacggcatcatcggcgacggccagca	Protospacer
  . *.* **** *****.*************

30. spacer 3.8|1509008|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to MG945394 (UNVERIFIED: Microviridae sp. isolate 3504-1711, complete genome) position: , mismatch: 9, identity: 0.719

tgtgagggcttgttcgttgcgtctggtgatgt	CRISPR spacer
cttatgaccttgttcgttgcgtttgttgatga	Protospacer
. *. *. **************.** ***** 

31. spacer 3.11|1509192|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NC_024355 (Staphylococcus phage 6ec, complete genome) position: , mismatch: 9, identity: 0.719

ttcattctcggaattttataacacagttgacc	CRISPR spacer
tccattctcagaattttttaacacaatcatta	Protospacer
*.*******.******* *******.*.. . 

32. spacer 3.11|1509192|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to KF929199 (Staphylococcus phage vB_SepS_SEP9, complete genome) position: , mismatch: 9, identity: 0.719

ttcattctcggaattttataacacagttgacc	CRISPR spacer
tccattctcagaattttttaacacaatcatta	Protospacer
*.*******.******* *******.*.. . 

33. spacer 3.15|1509436|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 9, identity: 0.719

aatcctcaagcgcaaaatctgattatcgccgt	CRISPR spacer
ttgtctcaagcgcaaaatatgattatctactg	Protospacer
   .************** ********  *  

34. spacer 3.21|1509802|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cgccctgccggcctcatcagcgacggccagca	CRISPR spacer
tgtcatgccggccccatcggcgacggccttgc	Protospacer
.*.* ********.****.*********    

35. spacer 3.21|1509802|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cgccctgccggcctcatcagcgacggccagca	CRISPR spacer
tgtcatgccggccccatcggcgacggccttgc	Protospacer
.*.* ********.****.*********    

36. spacer 3.21|1509802|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cgccctgccggcctcatcagcgacggccagca	CRISPR spacer
tgtcatgccggccccatcggcgacggccttgc	Protospacer
.*.* ********.****.*********    

37. spacer 3.21|1509802|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cgccctgccggcctcatcagcgacggccagca	CRISPR spacer
tgtcatgccggccccatcggcgacggccttgc	Protospacer
.*.* ********.****.*********    

38. spacer 3.21|1509802|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

cgccctgccggcctcatcagcgacggccagca	CRISPR spacer
tgtcatgccggccccatcggcgacggccttgc	Protospacer
.*.* ********.****.*********    

39. spacer 3.21|1509802|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cgccctgccggcctcatcagcgacggccagca	CRISPR spacer
tgtcatgccggccccatcggcgacggccttgc	Protospacer
.*.* ********.****.*********    

40. spacer 3.21|1509802|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

cgccctgccggcctcatcagcgacggccagca	CRISPR spacer
tgtcatgccggccccatcggcgacggccttgc	Protospacer
.*.* ********.****.*********    

41. spacer 3.1|1508581|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011808 (Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-1, complete sequence) position: , mismatch: 10, identity: 0.688

cttccggcgtcgtcgggttcgtgtacaaggcg	CRISPR spacer
gttccggcgccgtcggtttcgtgttgcgctca	Protospacer
 ********.****** *******   .  *.

42. spacer 3.9|1509069|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014516 (Frondihabitans sp. PAMC 28766 strain SR6 plasmid 3, complete sequence) position: , mismatch: 10, identity: 0.688

ttcgaccacaagggcgagacgctgcctgccca	CRISPR spacer
ttcgagcacaagggcaagacgctctacacgtc	Protospacer
***** *********.******* . ..* . 

43. spacer 3.17|1509558|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to AP014858 (Vibrio phage RYC DNA, complete sequence) position: , mismatch: 10, identity: 0.688

cgtaaggaaaccttcttcaaagacattcaaga	CRISPR spacer
gataaggaaaacttcttcacagacaatgtgac	Protospacer
 .******** ******** ***** *  .. 

44. spacer 3.20|1509741|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025809 (Sulfitobacter sp. SK025 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ccctggatgctgccgaccttgcctatagtggc	CRISPR spacer
ggggcgatgctgctgaccttgcctatcgttct	Protospacer
     ********.************ **  .

45. spacer 3.20|1509741|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032342 (Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

ccctggatgctgccgaccttgcctatagtggc	CRISPR spacer
cccaggatgatgccgaccttgccgtccgcctt	Protospacer
*** ***** *************  . *.  .

46. spacer 3.20|1509741|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033321 (Azospirillum brasilense strain Cd plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

ccctggatgctgccgaccttgcctatagtggc	CRISPR spacer
cccaggatgatgccgaccttgccgtccgcctt	Protospacer
*** ***** *************  . *.  .

47. spacer 3.20|1509741|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033315 (Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

ccctggatgctgccgaccttgcctatagtggc	CRISPR spacer
cccaggatgatgccgaccttgccgtccgcctt	Protospacer
*** ***** *************  . *.  .

48. spacer 3.21|1509802|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 10, identity: 0.688

cgccctgccggcctcatcagcgacggccagca	CRISPR spacer
gcctttgccggcctcgtccgcgacggccgcag	Protospacer
  *..**********.** *********.  .

49. spacer 3.27|1510168|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.688

atgtggcgtagcgtgttggcgtgcgtgtgcgc	CRISPR spacer
tcattcttcagcgtgatggcgcgcgtgtgcgc	Protospacer
 ..*  . .****** *****.**********

50. spacer 3.30|1510351|32|NZ_AP012325|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030761 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

tggcatatctgagacatggtgataaaacacct	CRISPR spacer
aattctttctgcgacatggtgatcaaacacgg	Protospacer
 . . * **** *********** ******  

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	987127 : 995748	16	Bifidobacterium_phage(75.0%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_AP012325|987127:995748|DBSCAN-SWA
AATGAACGGCGATATCGTCGAAGTCCCATTCAACGGGAGCATGATGATCGCGCAAAGGTTCGATGACGGTGAAATCTACGCGGCATTGAAACCGATTTGCGAGAACATCGGCATCGCATACAACGGACAGTGGGAACGGCTCAACAGAACGCCATGGGCAACCGTTCGTATCATACGAACAGTTGGCGCAGACGGTAAACAACGTGACATGGTGGCAATCAGCCGCAAGACGTTGACCATGTGGCTCGCCACCATCGACACGAACCGACTCAGCGACGAGCAGGCACGCCATAACGTGACCGTCTACCAGAAGGAAGCCGCAGAAGCCCTCGACAAGTACTTCAACGAGGGTGGCGCAATCCGCGTTTCCGATGCTGATTCGGACGAGGACATCATGGCCCGTGCCGTGCTCGTCGCGCAGAAGACCATCAAACAAAAGAACCAGCAGATCGCTTCGCAGCAGTCGCGCATCGACGAACTCCAGCCCAAGGCGTCCGCGTGGGACAACTTCGTCGATATCGACGATGCGCTTTCCGTTCGTGATTCCGCGAAACTGCTCAGCAACCTGGGTAGGACTGTCGGGCAGACGGAACTGTTCGAATGGCTTGACCGGCATGACTGGATCTTCCGTGAGAACAAGCATTGGTCCGCGCGTCAGAGCCGTATCAACGCCGGGCATCTGATGATGGTTCCGTCGAAGTCGCATGGGACGCACAAGGACGGGACTCCGTTCGCGTTCCCGCCGACTGTGAAGGTCACGAGGAAGGGTCTTGCCCTGATCGCCCGCCGGTTCGGCGAGGAAACGCTCCAGCTCGAATATCCGAAGGCTGGTGCGTGATGCCGGTCGACAACTCTCTTATTCCGTGCCGTATCGACAAACCGAATCCGTTCGAGGCGATGTTCGCGCTGATCTACATGGGTGTCGGAGCGTTCTGCCTGATTGCCGGCCTCCGACGGATGGAACGTTGGGAGATCCTTTTCGGATTCGCGATGCTGATGATCGCCTCGCAGGCATCCAACAGGTTTCTCGCACGCAAGCGGCTCTACGAGGACTGCTTGGTGTTCTGCAAGCCGCCGGAAGTCACCCGGGAAGCTGAAGGAAAGATGCCCCGGACGCGACAAGCTGACGGGCACCCTCGGAAAGAAGCGCTGAAATGAACGGTTTCGCTATCTTGCTCTTCAGGTTCTCCCATACAGTGGGCTTCCCGGTCTGTGATTCCGCCATGTACAGCACTCCGAACAGGGCCTGCAGGGAGACCTTCAGGTCGAACTCTTTCCCGGCCGCGTATTCGTCGAGGTTCCTTCTCGCTTCGGAGATGAGGTCCAGTACGTACACTCGCAGCGATGTCGGCAGACTGTCATCCTCTCGGACCGCCTTCAACGCCTCGTCCAGGAACTCGGAGATTGTCTTGCGTTCCTCTTCGGCGATGGAGATCGGTAGCGATGGCGACTTGTCGGCGATGATCTCCAATGCCTGCGCCTCGGCCGCATCCAGAGGGATATCCCGTTGCTGGGAAGTCGAGAAACCGGCCCAGTATCCGGTTCCCGAAGAATTTGTGTATGACTCCCACAGCTTCTGCCATATCTGCGGCATGACGCTTTTCGTTGTGCCCAACCGTCTGACATTCATCTTGATCAGATTGTCCAAGCACGTTTCGGCGTCATGCATTCTGCTGAACGATGTGGATATCCCATCGTCGAATCCATCGTCCCTTTCCTCGATCTTGAAGAACTGCAGCATGTACTCGGCTGGGTTCATTGATTCTTCTCCTAACTGTTCGGCCCGCACGTCGCATATGCGGGATGGCACCGATTTTAGGAGGGGGCCGGGCGGTTCTCCTAACGCCGCCCGGCATCACACACGCAAAGGAGACGCGTGATGGTTTTGCAGAACGAGCTCAAGGATGCGAGCCGTATCCCGTTGAAGGACAGGCTCGCATGGACCATCCCGCAGGCCGCGAGCCTGTACGGGATCGACTACGACGGCCTCCGACAGGCTGTTAACCAGGGCGACATAGACACGTTTCGTCCGCCAAGCAAACGAGGAACGCCTTCCCGCCGTCACATCAGACGCGAGGAAATGGACCGATACGTCAAATCGTTGGAGGAGTAAACATGAACGACATGGTTGACGTCAACACGCTGCGCGACGAAATCCGCGACAGGCGTGCCCGCAGGAGGCTCGCGCTGCTGTGCGCGTGTTCGTTGATCGTGGGCGTCGGATTGACGTTGGCTTTGACGTGGAGGCCGGACTGGAGCGATTGGCTGAAGCTGGCCGTGATCGTGCTGCTTCCACTGTCGGGCGGCGTCGCTGGTGGCATGCTGTCCGGCGACCTGTGAAAGCCTCCGCCCCGCGAGGGCTGCGACAAGGCCAAGTCGTCAACACCGAAAAATCAAGCATGGCCGTGCGCGTGAATCCTTCTTCTGCCTAACTCACATCACGCGTATGGCCGCCCGCCGTGAATGGCCTGCCGTCCGCGTCCGGTCGCGGAACGGCCGCGTGGTTCGATTCCACGCCACGGCACGAAAACACAGCAGGAATCCGAAAGGAAGTGGATCGATGGCCAATTACAGCTACGAGACGTTGCAACGGATGAGCGCCCACCCATGGGAGGGACTCAAGCCCGGCCAGCGCAAGGCCGTACGCAACTTTAACAGGAAGGAGGGAGCGTCCGAACCGGACATGCTCGAGGCGGAACGCATCCTTGAGGAGCATCCGAACCTGAGCATGGACGAGGCCCTGAACACGAGCACGAACCCCTCGTACCGCAAGGCCAAGGCCGACACCGACAGGCGCATCGCGGAGACCCACGGCACCGCCAAGACACCCAAGCCAGCCAAGACGGAAAAGCCGAAGAAGGGCGTGGCGGAACTGGTCGGCGAGGCGTTGAACGCGAAGCCCGCGGCCACGTCGACCGGTCCCGACTGGCAGTGGATCGACAGCCTGCCCCACGACTGCGCGCCGGTTCCCGAGCAGGGCGTCTACGCGTCGCTCGCCGCGGCGATGCGCGCCAATCCCGGCATGTGGACCAAGATGCGCGGCTTCGCCCGCTGTGACCTCAAGTGCGCGCGCAGCCGTGCTCGCGCGCTGGCGAACCGCGTGAACTCCGGAGGCATTACGTCGATGCGTCCGAAGGGCTCCTTCGAGGGCGCGTTCCGCACTTTGGAGGACGGTTCCGCGGTCTGCTTCGCACGCTACGTGGGAGAGGGGGAGTGATGGCAGGGGAGACCGTCATTACGATCGTCGGCAATCTGACCGCGGATCCGGAGGTCCGCACGACGTCCGCGGGCGCGCAGGTCGCGTCGTTCACGATCGCCAGCACGCCGCGCTCCTGGAACCGTGGCACGAACCAGTTCGAGGATGGTCAGGCTTTGTTCCTGCGCTGCAGCGCGTGGCGCGATCTGGCCGAGCATTGCGCCCGCTCCCTCGCCAAGGGCATGCGTGTGATCGCCCAGGGCAGGCTTACGCAACGCTCCTACGAGGCGAAGGATGGCACGCAGCGCACGGTCGTGGAATTGCAGGTGGATGAGATCGGCCCAAGCCTGCGGTATGCGACGGCGCAGGTGGCCAAGTCGCAGCGGGGTACGGCTGGAGCGTATGGGAATCCGTCTTCCGCTCCGGCTGGCTATACGGGTGGCACCACCGCAGCTGCGGCTTCGTTGCCGCCTTCCGACCCGTGGGGTTCGGTTTCGGGTTCGTCGTCTTCGTTCGGTGATTTCGGCAAGCCGGAATCCGAACCGGATTTCTAAGGAGAAATCATGAGCATGAAAGCATTGGAGTGGGCCATGTACGACGTGCCCGCCGAAATGACCAAAGGAGCGCTTCTCCGCATCCTCCTCGCGCTCGCCGACCATGCCGACACCGAAGGAAACGGCGCGTTCCCATCCCAGAAACGCTTATGCGCGCTCACCGGGTACAGCCGCCGCACCATCCAGCACGGACTCCACGACCTGGAGGCATCCGGACTGATCGTCAAAGGCGACCAGAGACTCACCGAACACTACGGACGTCACCGACCGATCGTATGGAACCTCACCATGGAGGATTTCAGGGGCGTAAAAACTGCGCCCCTGAAAAAGAACGAATCCGAGGCGCAGCATACTACGCCTCAAAACAGCCAAGAGGCGCAATTAGGGGCGCAAAAAACAGTCGTTAGAGGCGCAATTAGGGGCGCAATACCACTACGCCCAAACCTATATAAGGAAGAAAGTTATATAGAACCTAGAGAGAGTAACGCGCGCGCGAGAAAACAAATCCCAATACCAGCCGACTGGAAACCCACCGAAGAACACCAGGCGCTCGCCGACAGGCTCGGCATCGACTGCGACGTCGAAGCGGGGAAGTTCAAGGACAGGGCACTCGACACCGGCGCCACATCGGCCGACTGGGACGCGAAATTCCGCATCTGGCTCATGCGCGGCCACGAACTCGGATACACCACCGTCAAAAACCAGCAATCAGCGAGGAAGTACACGTGGGCGAGCGACGAAGTGAAACGCGTCATCGGCACCGACCTCGAAGGCACCGACGACTACATGGAGCTCGCGTGCAAGGTCGCGGACCTGCTCAACCAGGGCGTGGACCCGGACATGCTGCGCCGTCAGCTCGCAAACGTGCCCGACACCGCGTGGGTCGAACAATTGTTCGAACAGGAGGCGGCGGCATGAACGCCATGACCATCGCACACATGGCCGGCGTCCTCACCTCGGCCATCCAAGACGCCGACCGATTGGAACTCGACGCGCTCAAAGGCCCAGCGCTCGCCGATATGGACCTTGACCGCATCCGCAATATCAAACGCGACTGCTCGACCTGCATCAACCTGCTCGACCAGCTCGGAAGGGAGCGACGATGAGCGACCGGCAATTCCAGGAATCGAAACGCGTCGCCTTGCAACGTCAGGGTTGGCATTGCATGCGTTGCGGACGCAACCTGCACGACCCGACCGTCTGGCCGGGCAGGAGCGGCCACCACCGGCAGTTGCGCCGTCGGGCCGACCCGACCGTGCGTGACCTGCCGTGCAACATCGTCGAACTGTGCGGGTCGGGCACGACCGGCTGTCATGGTTGGGCGCACGCGCATCCGGCCGAGGCGGAACGGTTCGGCTACATCATCCCGAGTTGGCGTGGTCCGCTCAACGCGCCGATACGCGACTGGAACGGCGACTGGTGGTGGCTGTTGGATGACGGCACGGCGCAACGGCTCACTCAAATCGAAATCATCGAATGGCAAAGCGATTGGAAGGAAGAATCATGAGGAAACAGGACGAAGACCGGAATGGGAAGCCGGAGGCGCTGCTCTGGCTCGACTTCGAAACGACCGGTACGGACAGGAATGACAGTCTGCCGTTGGAGGTCGGCATGGAATGCACCGACGTGCTGGGCGAGCATTCGTATGGATCCCTGCATCGCATCATCAGACCGGACTATCTCGACCTGTTGGACATGAGTCCGATGGCGTTCTCCATGCACACGGACAATGGTCTCCTGTTCGAACTGCTGAACGGCTCCGACAGGAACGACTGCGTGGAAGCGGTCGTGAACGCTGTGGAGGAGTATCTCGAATCCCTGTCGCAACGCTTCACCTTGGTTCCGGCCGGAACGAACGTGGACTTCGACCTCGACTTCCTGAAACGTCTCGACCTGAACCCGGACAGGTGGCTGTCCTACCGCAAGTTCGACCTGACCACGCTCCGCCGGTATTTGAGGTTCATCGACTGTCCCGAGGATCCGTACGAGGGGCATCGTGGCACGCACAGGGTGCGCGACTGCATCCGACGCGACATCAACGACTACATCCGATACCGCAAGCTCCTGAAGGGAGCATGGTGATGACAGCGGTCTCCATGATGCTCCTGTGCGCGGCCGTCCTGGTCGCTTGGATCGGAGGCCGGCCATGACGGTCCAGACGCATATGGCGTGGCGGTACCGGAATCCCGCCGACCTGATCGGCCGGCGATGCATCGCGCTCACCGGCATGGATGTCACGTTGGACGGCCCATTGGATCTGATCCGGTTGAGTCCGGTCCACGCGGTCCTGAAATACCGGGGCATAGGACTGCACGTCATCGACTGCGACCTACGCCATCACACGAACAAAACCTCGGACGGCATCCGCGCCGTCGTCATCACGGAAAGCAAACCATGAAACACACCACATCGCATGCCAGGAAATGGCATAGGACCAGTCCATGCCCATACTGCGGCACGAGGAAACCCGGCATCGAACCCTACGCCCGGATCATCGGAGCCAAGATGCACTGCATCTGGATCGCCAAATGCCATGGATGTCCGAACGCCGTCTGGATCACCACCCCGGACGACAGCATCAAAACCGCGATCCGCGGATGGAACCGATACGCCAACGGCGGATGGCGCAAACACCAGGAGGAAACGAAATGAGAAAAACAACACGCATCACACTCAAGGACACAAAATGAGCAATCGAAGTTATTTGGTGCCAAGGCCGCCAGCGTTCGACCATGAGCATCCCAGACCGAAGGAGGAAGGCGAGGTGCTGTACTGCGGAAATTGCCAAAAATGGTACGTATCATGGTTTCCCCTCACCGAAGTCAAAACCATATGGGGCCGCCGCCCCGAATGGTGGATACGCATCTTCCACCGCAAACCATACGAGACGATCATCCAGCAAATACGAAGGGAAACGAAATGAAAGTGAAGAAAACCCTCACGGACATGATCATCAAATGGCATCAGGCCGGATACAGCCTCGATGAGATCGCCCCACTGATGCCACAAGTCCCCAAAGAGGAAATCAAAGCCATCATTCAACAACACCACGAATAACAAGAAACCCGACCTTCCGGCCGGGCTCCTGACACCACCAGAAGACTACCACGCCGGAGGGAATCGAACAAATGAACGAACAAACCAACGAATCCCAACCAACACCAAACCAGACACAACCAGCACAAACCAACCAAAACAAGCCAGCGCTCGCCGGCGTGTGCCTCGTCTGCGGCGGAGAATGCGCTGTCGGCGACACCATGTGCGCGAGATGCGATGGGCTGATGCGCGGCTGGCTGCGGGAATATCCATCATGGTTGGATTCGCTGCATGAGTTCCTGGACTCGACCGCGCACTACGGAGGCCGCCAGCCTGGACGCGTCAACCTTCCATCCGCGCCTACGCCAATCCGATTGCCGGTGCTCGACCACATGCAGGCCATCGAGGATGCCGCAATCGCACTCTGGCGCCGGTTGTACGCTCCGCCCGCCATGCCTTGGGCTACCTGTGACGTGCATCCGCCGCTGGTGGACATGCTGCGTGCCTGCGCCGGCAGTCCTCGACTGCGCCGCATGCCTGACATCGCCGACTTCTACCATGAGTGGGAGTCGATGGTTCGAAAGACGCTGGACATCATCGACGTGCCGCCTGCGAAACATGGCATCGGAAGATGCCCGAACCCGCTGTGCGGAGTCGAATTGACAGCGGCGGTCGGCGCGGTAAGCGTTGCATGTCCCGTGTGCGGCAACACTTACCTTGTGGCGGATGTGCGGTTGGGGTTCCTGAGGGAATGCGTTCGGTCGGGACGCGCGTTCACGGCGGGGGAGTGTGCGGAACTGCTGCGCGAATGCGGATTCCAGTGCAACGCGAACACGATTCGCTCATGGCGCAAGCGCGGCAGGCTCCAACCGGTTGGTGAAAACGTGAAGGGGCAGCCGTTGTACAGGCTTTCCGACGTGCATGGACAGGTCGTGCGACGCGACTCGATTTGACAAAATCGAAAGTGCAACGCACAATTGTCAGTGGATTAGAGGGTTCAAACCGAGGCGACTTGGTTTGAACCCTTTTCATATCCACCTTGGATTCTCCTAACTCCTTGGGCTACGTAACACCGTCCTGTCTGAGCGGCATATCGGACACGCTCCGCCCACTCACGTCAGAGTGGGCATACACCAACAGTGGCAGGCAAGCCAATCCCGCGACTCGCGATGCAGTGAAGCTCAAACCGCCTGTCCATGCCTTCGTAGGAATCAGTGGCAGATCGCACCGGTCGCAGATCTTCGGATCCTCTTCCTTGCGGCCGTATGTATGCGCGGGTTCGACTCCCGCCGAAGGCACCAACCAATCCGAAGCAAAGGAGCAACAATGAAAGACGTACTTCAAGAGATTGCTCACCAGCTCAAACGCATCGCGGACCAAGGCGAGCAAACCACCATGCAGCTCAACCGCGAAGACGCCCTCGCCGCATGGGGACTCCGCATCTACCAAGCCGATTACCTGCGCGCACTCCAACAACTCGGCATCGACATCACGGATTAAATGCGCAGACAACACAAGCCAGACCCAAGAAAAACCAACGGCTGGAAACGCGCACAACTCCGAGCAAGAGTCCTCGCAGCATACGATGTGTGCGCCATCTGCGGCAAACCAGTCGACAAGACACTGAAGACACCACACCCAATGAGCGCCGAAGTCGACGAAATCATCCCAGTCAGCCGAGGCGGCGACCCACTCGCATGGAACAACGTCCAACTCACACACCGATGCTGCAATCAACACAAAAGCAACCATTCAAACGAATGGGCGAAACGCGAAGCCGCGGGCAAACCAACCATCAAACAAAGCTCAATGCCATTCAAAACCATCGGCATCTGA

Protein sequences of DBSCAN-SWA_1

>NZ_AP012325|987127:995748|994004_994865_+|WP_003834980.1|DBSCAN-SWA
MNEQTNESQPTPNQTQPAQTNQNKPALAGVCLVCGGECAVGDTMCARCDGLMRGWLREYPSWLDSLHEFLDSTAHYGGRQPGRVNLPSAPTPIRLPVLDHMQAIEDAAIALWRRLYAPPAMPWATCDVHPPLVDMLRACAGSPRLRRMPDIADFYHEWESMVRKTLDIIDVPPAKHGIGRCPNPLCGVELTAAVGAVSVACPVCGNTYLVADVRLGFLRECVRSGRAFTAGECAELLRECGFQCNANTIRSWRKRGRLQPVGENVKGQPLYRLSDVHGQVVRRDSI
>NZ_AP012325|987127:995748|995238_995412_+|WP_155812146.1|DBSCAN-SWA
MKDVLQEIAHQLKRIADQGEQTTMQLNREDALAAWGLRIYQADYLRALQQLGIDITD
>NZ_AP012325|987127:995748|993022_993274_+|WP_003834984.1|DBSCAN-SWA
MTVQTHMAWRYRNPADLIGRRCIALTGMDVTLDGPLDLIRLSPVHAVLKYRGIGLHVIDCDLRHHTNKTSDGIRAVVITESKP
>NZ_AP012325|987127:995748|990342_990876_+|WP_003834989.1|DBSCAN-SWA
MAGETVITIVGNLTADPEVRTTSAGAQVASFTIASTPRSWNRGTNQFEDGQALFLRCSAWRDLAEHCARSLAKGMRVIAQGRLTQRSYEAKDGTQRTVVELQVDEIGPSLRYATAQVAKSQRGTAGAYGNPSSAPAGYTGGTTAAAASLPPSDPWGSVSGSSSSFGDFGKPESEPDF
>NZ_AP012325|987127:995748|992379_992958_+|WP_003834985.1|DBSCAN-SWA
MRKQDEDRNGKPEALLWLDFETTGTDRNDSLPLEVGMECTDVLGEHSYGSLHRIIRPDYLDLLDMSPMAFSMHTDNGLLFELLNGSDRNDCVEAVVNAVEEYLESLSQRFTLVPAGTNVDFDLDFLKRLDLNPDRWLSYRKFDLTTLRRYLRFIDCPEDPYEGHRGTHRVRDCIRRDINDYIRYRKLLKGAW
>NZ_AP012325|987127:995748|993801_993933_+|WP_033512899.1|DBSCAN-SWA
MKKTLTDMIIKWHQAGYSLDEIAPLMPQVPKEEIKAIIQQHHE
>NZ_AP012325|987127:995748|991790_991982_+|WP_003834987.1|DBSCAN-SWA
MNAMTIAHMAGVLTSAIQDADRLELDALKGPALADMDLDRIRNIKRDCSTCINLLDQLGRERR
>NZ_AP012325|987127:995748|989626_990343_+|WP_128805884.1|DBSCAN-SWA
MVRFHATARKHSRNPKGSGSMANYSYETLQRMSAHPWEGLKPGQRKAVRNFNRKEGASEPDMLEAERILEEHPNLSMDEALNTSTNPSYRKAKADTDRRIAETHGTAKTPKPAKTEKPKKGVAELVGEALNAKPAATSTGPDWQWIDSLPHDCAPVPEQGVYASLAAAMRANPGMWTKMRGFARCDLKCARSRARALANRVNSGGITSMRPKGSFEGAFRTLEDGSAVCFARYVGEGE
>NZ_AP012325|987127:995748|987127_987964_+|WP_003834994.1|DBSCAN-SWA
MNGDIVEVPFNGSMMIAQRFDDGEIYAALKPICENIGIAYNGQWERLNRTPWATVRIIRTVGADGKQRDMVAISRKTLTMWLATIDTNRLSDEQARHNVTVYQKEAAEALDKYFNEGGAIRVSDADSDEDIMARAVLVAQKTIKQKNQQIASQQSRIDELQPKASAWDNFVDIDDALSVRDSAKLLSNLGRTVGQTELFEWLDRHDWIFRENKHWSARQSRINAGHLMMVPSKSHGTHKDGTPFAFPPTVKVTRKGLALIARRFGEETLQLEYPKAGA
>NZ_AP012325|987127:995748|987963_988284_+|WP_047750623.1|DBSCAN-SWA
MPVDNSLIPCRIDKPNPFEAMFALIYMGVGAFCLIAGLRRMERWEILFGFAMLMIASQASNRFLARKRLYEDCLVFCKPPEVTREAEGKMPRTRQADGHPRKEALK
>NZ_AP012325|987127:995748|988207_988915_-|WP_128805885.1|DBSCAN-SWA
MRAEQLGEESMNPAEYMLQFFKIEERDDGFDDGISTSFSRMHDAETCLDNLIKMNVRRLGTTKSVMPQIWQKLWESYTNSSGTGYWAGFSTSQQRDIPLDAAEAQALEIIADKSPSLPISIAEEERKTISEFLDEALKAVREDDSLPTSLRVYVLDLISEARRNLDEYAAGKEFDLKVSLQALFGVLYMAESQTGKPTVWENLKSKIAKPFISALLSEGARQLVASGASFLQLPG
>NZ_AP012325|987127:995748|991978_992383_+|WP_003834986.1|DBSCAN-SWA
MSDRQFQESKRVALQRQGWHCMRCGRNLHDPTVWPGRSGHHRQLRRRADPTVRDLPCNIVELCGSGTTGCHGWAHAHPAEAERFGYIIPSWRGPLNAPIRDWNGDWWWLLDDGTAQRLTQIEIIEWQSDWKEES
>NZ_AP012325|987127:995748|989005_989239_+|WP_003820448.1|DBSCAN-SWA
MVLQNELKDASRIPLKDRLAWTIPQAASLYGIDYDGLRQAVNQGDIDTFRPPSKRGTPSRRHIRREEMDRYVKSLEE
>NZ_AP012325|987127:995748|990885_991794_+|WP_003834988.1|DBSCAN-SWA
MSMKALEWAMYDVPAEMTKGALLRILLALADHADTEGNGAFPSQKRLCALTGYSRRTIQHGLHDLEASGLIVKGDQRLTEHYGRHRPIVWNLTMEDFRGVKTAPLKKNESEAQHTTPQNSQEAQLGAQKTVVRGAIRGAIPLRPNLYKEESYIEPRESNARARKQIPIPADWKPTEEHQALADRLGIDCDVEAGKFKDRALDTGATSADWDAKFRIWLMRGHELGYTTVKNQQSARKYTWASDEVKRVIGTDLEGTDDYMELACKVADLLNQGVDPDMLRRQLANVPDTAWVEQLFEQEAAA
>NZ_AP012325|987127:995748|995412_995748_+|WP_033512883.1|DBSCAN-SWA
MRRQHKPDPRKTNGWKRAQLRARVLAAYDVCAICGKPVDKTLKTPHPMSAEVDEIIPVSRGGDPLAWNNVQLTHRCCNQHKSNHSNEWAKREAAGKPTIKQSSMPFKTIGI
>NZ_AP012325|987127:995748|989241_989466_+|WP_003834991.1|DBSCAN-SWA
MNDMVDVNTLRDEIRDRRARRRLALLCACSLIVGVGLTLALTWRPDWSDWLKLAVIVLLPLSGGVAGGMLSGDL

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003834994.1|987127_987964_+	phage antirepressor KilAC domain-containing protein	A0A1D8EU47	Propionibacterium_phage	6.9e-21	45.3
WP_047750623.1|987963_988284_+	hypothetical protein	NA	NA	NA	NA
WP_128805885.1|988207_988915_-	hypothetical protein	NA	NA	NA	NA
WP_003820448.1|989005_989239_+	DNA-binding protein	I3NLC7	Bifidobacterium_phage	1.9e-37	100.0
WP_003834991.1|989241_989466_+	hypothetical protein	NA	NA	NA	NA
WP_128805884.1|989626_990343_+	hypothetical protein	NA	NA	NA	NA
WP_003834989.1|990342_990876_+	single-stranded DNA-binding protein	I3NLC3	Bifidobacterium_phage	6.3e-60	71.9
WP_003834988.1|990885_991794_+	helix-turn-helix domain-containing protein	I3NLC1	Bifidobacterium_phage	2.0e-90	56.2
WP_003834987.1|991790_991982_+	hypothetical protein	I3NLC0	Bifidobacterium_phage	2.2e-23	88.9
WP_003834986.1|991978_992383_+	hypothetical protein	I3NLB9	Bifidobacterium_phage	1.6e-76	91.0
WP_003834985.1|992379_992958_+	hypothetical protein	I3NLB8	Bifidobacterium_phage	5.2e-100	91.6
WP_003834984.1|993022_993274_+	hypothetical protein	NA	NA	NA	NA
WP_033512899.1|993801_993933_+	hypothetical protein	NA	NA	NA	NA
WP_003834980.1|994004_994865_+	hypothetical protein	NA	NA	NA	NA
WP_155812146.1|995238_995412_+	hypothetical protein	NA	NA	NA	NA
WP_033512883.1|995412_995748_+	HNH endonuclease	M1PFG7	Streptococcus_phage	2.3e-15	49.4