CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP012330	Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 strain JCM 1200	8 crisprs	cas3,csa3,DEDDh,WYL,cas2,cas1,cas4,cas7,cas8c,cas5,cas14j	0	11	1	0

1. NZ_AP012330

CRISPR-Cas detection and classification

Crispr_ID: NZ_AP012330_1

• CRISPR_ID: NZ_AP012330_1
• CRISPR_location: 34843-35020
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 3 spacers

Consensus repeat of NZ_AP012330_1

Consensus_repeat	Method
TGTCCGATTCTCCAGAATCGGACAC	CRISPRCasFinder

spacers of NZ_AP012330_1

>1.1|34868|26|NZ_AP012330|CRISPRCasFinder
CCAAACCACGAAAAGTGAGCCACAGT
>1.2|34919|26|NZ_AP012330|CRISPRCasFinder
GCAAACGGCAAAAAGTGCGTTCCAGT
>1.3|34970|26|NZ_AP012330|CRISPRCasFinder
GCAAGAGATGAAAATGGGCGCGTGGA

CRISPR arrays and Neighbor proteins around NZ_AP012330_1

CRISPR arrays

The CRISPR arrays of NZ_AP012330_1

>merge|NZ_AP012330|1|34843-35020|CRISPRCasFinder
TGTCCGATTCTGGAGAATCGGACAACCAAACCACGAAAAGTGAGCCACAGTTGTCCGATTCTGCCGAATCGGTCATGCAAACGGCAAAAAGTGCGTTCCAGTTGTCCGATTCTCCAGAATCGGACACGCAAGAGATGAAAATGGGCGCGTGGATGTCCGATTCGCCAGAATCGGACAC

>NZ_AP012330|1|1|34843-35020|CRISPRCasFinder
TGTCCGATTCTGGAGAATCGGACAA	CCAAACCACGAAAAGTGAGCCACAGT
TGTCCGATTCTGCCGAATCGGTCAT	GCAAACGGCAAAAAGTGCGTTCCAGT
TGTCCGATTCTCCAGAATCGGACAC	GCAAGAGATGAAAATGGGCGCGTGGA
TGTCCGATTCGCCAGAATCGGACAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP012330.1|WP_022245027.1|38926_39571_+|glutamine-amidotransferase	unknown	unknown	gnl|CDD|181107
NZ_AP012330.1|WP_004222830.1|29466_29904_-|hypothetical-protein	unknown	unknown	gnl|CDD|380033
NZ_AP012330.1|WP_004222865.1|42807_44274_-|serine-hydrolase	unknown	unknown	gnl|CDD|274573
NZ_AP012330.1|WP_004222861.1|39782_41870_-|Stk1-family-PASTA-domain-containing-Ser/Thr-kinase	unknown	unknown	gnl|CDD|270916
NZ_AP012330.1|WP_004222871.1|47400_47916_-|FHA-domain-containing-protein	unknown	unknown	gnl|CDD|238017
NZ_AP012330.1|WP_004222842.1|33374_34169_+|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl|CDD|366759
NZ_AP012330.1|WP_004222814.1|25997_27626_+|sodium/proline-symporter	unknown	unknown	gnl|CDD|271369
NZ_AP012330.1|WP_004222812.1|23978_25820_+|threonine/serine-exporter-family-protein	unknown	unknown	gnl|CDD|377697
NZ_AP012330.1|WP_004222827.1|28974_29355_+|DUF3073-domain-containing-protein	unknown	unknown	gnl|CDD|378620
NZ_AP012330.1|WP_004222809.1|20962_23719_-|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl|CDD|366019
NZ_AP012330.1|WP_072043183.1|36171_36666_-|cell-division-protein-CrgA	unknown	unknown	gnl|CDD|179394
NZ_AP012330.1|WP_004222806.1|19271_20201_-|hypothetical-protein	unknown	unknown	unknown
NZ_AP012330.1|WP_004222867.1|44270_45794_-|FtsW/RodA/SpoVE-family-cell-cycle-protein	unknown	unknown	gnl|CDD|223843
NZ_AP012330.1|WP_004222837.1|32966_33188_-|hypothetical-protein	unknown	unknown	unknown
NZ_AP012330.1|WP_022245029.1|36782_37586_+|DUF881-domain-containing-protein	unknown	unknown	gnl|CDD|377575
NZ_AP012330.1|WP_022245036.1|27746_28847_-|tryptophan--tRNA-ligase	unknown	unknown	gnl|CDD|234866
NZ_AP012330.1|WP_004222834.1|30258_32703_+|glycogen/starch/alpha-glucan-phosphorylase	unknown	unknown	gnl|CDD|273967
NZ_AP012330.1|WP_004222854.1|37589_38681_+|class-E-sortase	unknown	unknown	gnl|CDD|320679
NZ_AP012330.1|WP_004222862.1|41866_42811_-|serine/threonine-protein-kinase	unknown	unknown	gnl|CDD|270916
NZ_AP012330.1|WP_033524170.1|45790_47395_-|serine/threonine-protein-phosphatase	unknown	unknown	gnl|CDD|223704

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_AP012330.1|WP_022245027.1|38926_39571_+|glutamine-amidotransferase	gnl|CDD|181107	PRK07765, PRK07765, aminodeoxychorismate/anthranilate synthase component II.	9.83843e-97
NZ_AP012330.1|WP_004222830.1|29466_29904_-|hypothetical-protein	gnl|CDD|380033	pfam17844, SCP_3, Bacterial SCP ortholog. This domain is found in MSMEG_5817 gene product from M. smegmatis. It has been shown to be vital for mycobacterial survival within host macrophages. Crystal structure revealed a Rossmann-like fold alpha/beta two-layer sandwich forming a highly hydrophobic interface cavity and with high structural homology to the SCP family. Hence, it has been suggested that this domain may be involved in the interaction of apolar ligands through its hydrophobic cavity. Alanine-scanning mutagenesis of the hydrophobic cavity of MSMEG_5817 protein demonstrated that the conserved Val82 residue plays an important role in ligand binding.	8.04859e-43
NZ_AP012330.1|WP_004222865.1|42807_44274_-|serine-hydrolase	gnl|CDD|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	4.30501e-95
NZ_AP012330.1|WP_004222861.1|39782_41870_-|Stk1-family-PASTA-domain-containing-Ser/Thr-kinase	gnl|CDD|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.90767e-127
NZ_AP012330.1|WP_004222871.1|47400_47916_-|FHA-domain-containing-protein	gnl|CDD|238017	cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).	2.14892e-18
NZ_AP012330.1|WP_004222842.1|33374_34169_+|rhomboid-family-intramembrane-serine-protease	gnl|CDD|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	6.43711e-24
NZ_AP012330.1|WP_004222814.1|25997_27626_+|sodium/proline-symporter	gnl|CDD|271369	cd11475, SLC5sbd_PutP, Na(+)/proline cotransporter PutP and related proteins; solute binding domain. Escherichia coli PutP catalyzes the Na+-coupled uptake of proline with a stoichiometry of 1:1. The putP gene is part of the put operon; this operon in addition encodes a proline dehydrogenase, allowing the use of proline as a source of nitrogen and/or carbon. This subfamily also includes the Bacillus subtilis Na+/proline cotransporter (OpuE) which has an osmoprotective instead of catabolic role. Expression of the opuE gene is under osmotic control and different sigma factors contribute to its regulation; it is also a putative CcpA-activated gene. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	2.11336e-178
NZ_AP012330.1|WP_004222812.1|23978_25820_+|threonine/serine-exporter-family-protein	gnl|CDD|377697	pfam06738, ThrE, Putative threonine/serine exporter. ThrE is a family of bacterial and Archaeal proteins that catalyze the export of L-threonine from the cell. UniProtKB:Q79VD1 has been characterized as being necessary for this export. The domain exhibits 10 putative TMs and catalyzes the proton-motive-force-dependent efflux of threonine and serine.	7.30224e-38
NZ_AP012330.1|WP_004222827.1|28974_29355_+|DUF3073-domain-containing-protein	gnl|CDD|378620	pfam11273, DUF3073, Protein of unknown function (DUF3073). This family of proteins with unknown function appears to be restricted to Actinobacteria.	2.63066e-19
NZ_AP012330.1|WP_004222809.1|20962_23719_-|phosphoenolpyruvate-carboxylase	gnl|CDD|366019	pfam00311, PEPcase, Phosphoenolpyruvate carboxylase.	0
NZ_AP012330.1|WP_072043183.1|36171_36666_-|cell-division-protein-CrgA	gnl|CDD|179394	PRK02251, PRK02251, cell division protein CrgA.	1.77605e-51
NZ_AP012330.1|WP_004222867.1|44270_45794_-|FtsW/RodA/SpoVE-family-cell-cycle-protein	gnl|CDD|223843	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning].	1.85621e-73
NZ_AP012330.1|WP_022245029.1|36782_37586_+|DUF881-domain-containing-protein	gnl|CDD|377575	pfam05949, DUF881, Bacterial protein of unknown function (DUF881). This family consists of a series of hypothetical bacterial proteins. One of the family members YlxW from Bacillus subtilis is thought to be involved in cell division and sporulation.	3.75452e-47
NZ_AP012330.1|WP_022245036.1|27746_28847_-|tryptophan--tRNA-ligase	gnl|CDD|234866	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.	4.37595e-113
NZ_AP012330.1|WP_004222834.1|30258_32703_+|glycogen/starch/alpha-glucan-phosphorylase	gnl|CDD|273967	TIGR02093, Glycogen_phosphorylase, glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_AP012330.1|WP_004222854.1|37589_38681_+|class-E-sortase	gnl|CDD|320679	cd05830, Sortase_E, Sortase domain found in the class E family of sortases. Class E sortases are membrane-bound cysteine transpeptidases distributed in Gram-positive bacteria (mainly present in Actinobacteria). Genes encoding class A and E sortases are never found in the same organism, and similar to class A sortases, the genes encoding class E sortases are not positioned adjacent to genes encoding potential protein substrates, suggesting a housekeeping sortase function of class E sortases in some high G + C Gram-positive bacteria. Similar to class A sortase, class E sortases are capable of anchoring a large number of functionally distinct surface proteins containing a cell wall sorting signal to an amino group located on the bacterial cell wall. They recognize an LAXTG sorting signal, instead of the canonical LPXTG motif processed by class A sortases. The prototypical class E sortase from Corynebacterium diphtheria (named Cd-SrtF) is a non-polymerization sortase that is not required for pilus polymerization, and proceeds to complete the assembly process by anchoring the polymer to the cell wall peptidoglycan. Moreover, in Streptomyces coelicolor, one or both of Staphylococcus aureus SrtA homologs may function as class E sortase responsible for the cell wall anchoring of the long chaplin proteins (ChpA-C) containing an LAXTG sorting signal, which presumably mediate aerial hyphae formation. The family also includes some class E sortase homologs from Gram-negative and Archaebacterial species, but the functions of these enzymes are unknown.	2.44268e-62
NZ_AP012330.1|WP_004222862.1|41866_42811_-|serine/threonine-protein-kinase	gnl|CDD|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.43683e-109
NZ_AP012330.1|WP_033524170.1|45790_47395_-|serine/threonine-protein-phosphatase	gnl|CDD|223704	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms].	3.24262e-67

Protein sequences

>NZ_AP012330.1|WP_004222842.1|33374_34169_+|rhomboid-family-intramembrane-serine-protease
MAYQRFSLFPDSPSFKDFFSARSMRYRWRNGDPVITVTIMAICVAVWIVETLLKIVWPTGCNAFVGSGVFMPALATHRPWTFITSMFLHQPASLWHILFNMLTLWCVGPVLERMMGHLPYLALYVLSGLGGSAGMMVWALFSQDGWLTSAYGASGALFGLFAAILVVYQRIGIDIRSMLIWMLINFLMPIITPNIAWQAHVGGFIIGGVFAWLLVSGLHALRGKSLQQRTLMYGVIMLAVIIAIVVACNMSNPLRANPLLGMFF
>NZ_AP012330.1|WP_004222837.1|32966_33188_-|hypothetical-protein
MENKSSNGWKFFALLFGALLAGVVGLYVYKQQNPDYDPWEEPWENSSSPVDLGLTKDAEDGEAEVAPATPEAA
>NZ_AP012330.1|WP_004222834.1|30258_32703_+|glycogen/starch/alpha-glucan-phosphorylase
MTEITAPKSAVTAEQFADEIREQLKYTQGVTVEQAKPADVYVAASAAVRRHLMDSWFKTQSDMVNGNTKAVGYLSAEFLMGKQLRNALLNAGLTEQFDAAVKELGFSVQDVVDAEHEPGLGNGGLGRLAACFIDSLASLGVPAFGYGIQYKYGIFEQKFDENGKQIETPDYWLTNEEPWGHIDYNRDQKVSFGGEVVEEDGKKVWKPAWSVRAVPVDYMVPGYASGRVNTLRLWTAKSYDEFDLLTFNKSEYLDAVKPQVEAENISKILYPEDSTPQGKALRLEQQYFFVSASIHDAIRVFYPGQDKPDLTTFADKITFQLNDTHPVIGIPELMRVLMDEYGYDWDTAWTVTNKTFNYTCHTLLPEALEVWPSKLIGELLPRHLEIIEKIQDQFAAELKAKCVDEATIKDMAIYTGDSVRMAYLATYGGSHVNGVAELHSQLLKDVTLKNFSDVYPDKFTNVTNGVTPRRFVKLANPRLSDLITEGLGTDKWVSDLELLKGLEPLAADDEFVKKFAAVKQANKVDFSNYAKREYGFDIDPNTMINTMVKRLHEYKRQALKILAVIARYADIKSGRIAADDVMPRTIVFGAKAAPGYYLAKQTIQLINNVARVINNDPDVKGKLNVYFPWNYNVRLAQHLIPATDLDEQISQAGKEASGTGNMKFALNGAMTVGTLDGANVEIRERVGAENFFLFGMTVDEVDALYAEGYDPKKYYEADPRLKAAIDMVADGTFSNGDKTVYEDLVHDWLTKDWFMTLADFGAYTAIQSEIEALYAQPLEWNRKALINVANSGYFSSDRSMEDYLERIWMTGPLK
>NZ_AP012330.1|WP_004222830.1|29466_29904_-|hypothetical-protein
MAVIREQDLHKGHDAFAQWLQTSHRMIADNIPANTDAARDFRLEFSPRLPRQLWAMAVRYSLHLLEKKAPGAGVEVRVAPWGAIKILDGPASDPHNLTPPDVIELEPDVWMRLATGITSWAEEKEAGRITAVGERDDLSSLLPLV
>NZ_AP012330.1|WP_004222827.1|28974_29355_+|DUF3073-domain-containing-protein
MGRGRQKAKQQKIARKLKYLTTDTDYDELAKELGAQEPGSGSFDPFADIEAKYSHDADAEDEISEDAQESAQTDAEDDLDEYAKWAAEAAAKATSGEFPAAKSAAPKPHKPIPMPMPSALKPKKQD
>NZ_AP012330.1|WP_022245036.1|27746_28847_-|tryptophan--tRNA-ligase
MTDETQEQQITAVGNEMSASFLAAKKRSDATLAAIEQNPGKFTMLTGDRPTGRLHLGHYFGSIRERVAMQNRGVNSNIIIADYQVITDRDTTAHIEDNVLNLVLDYMAAGIDPEKTMIFTHSAVPAENQLMLPFLSLVTEAELHRNPTVKSEMEASGHALTGLLLTYPVHQACDILFCKANVVPIGKDNLPHVEITRTIARRFNERYAKKHPVFPEPAAILSEAPEIPGLDGRKMSKSYGNSIMLGATAQETAKLIKKSPTDSERRITFDPIARPQVSALLTTAGLVTGRDPKEIAEEIGDSGAGALKAYVIESVNSFLEPHRARREELAKDMDYVRDVLAEGNKKANAIANETLEQVRDAMGMRY
>NZ_AP012330.1|WP_004222814.1|25997_27626_+|sodium/proline-symporter
MVTKDFWVLLAMVIYFVAMLTIGFIYSKRSNSSTRQYFAGGRGVGPWLTALSAEASDMSGWLLMGLPGVAYFTGAADPLWTALGLALGTYLNWKLVARRLRRYSVVAGDAITIPDFFSKRFHDKRNIVSTIAALIILVFFCVYVGSCFVTVGKLFSTLFGWDYHLTMVIGAAIVFAYTVIGGYLSVVVTDFIQGLLMFFALAVVFIGSVASVGGVDNTVAFLKGIPGFLDGTQMATPILNDAGEQIVKAGQAMFGAPTEYGVITMISMLAWGLGYFGMPQVLVRFLSIRSSEEIKKSRIIATTWCVVSLACGVCIGLVGRAMMPTQFVTQSAAENIFIVVSQALLPSFMCGIVVSGIFAASMSSSSSYLIIGASAVGENIFRGLLYRKATDRQVMMVARITLLVMFIFGIVVAFDQNSSIFQVVSYAWAGLGASFGPLMLCSLYWRRTNKFGAIAGMLSGTATVLIWHNFIKPLGGVFAIYELLPAFIISLLFIVVVSLLTPAPDAEVLHEFDHYLDDPDDRKVDDDLVAAEIASGEKRAKI
>NZ_AP012330.1|WP_004222812.1|23978_25820_+|threonine/serine-exporter-family-protein
MSAQYEHEHETNFDSAEKSASAVSKFHTHSIPLDMEDIERDWDKPVAEAGIAAKASVIVRVGMLDLGAGTGSFRVREMMHRIAYPLGVHVRADVNLTDIEASCTDGKDRITEVVDLPTTGVNTERIWLLEHFADWFNVNLGKGSMYHSQSDVSEGLMQHLDKRDASQVSADLSKRLRERQKAEQNQEGSDDPVLDALEMVTERAEVTDTTAQPLHLRDIEAASEQHNRGEREAERETKRETAGTANVTSSESTTKKARKNRNHKPPKGQYAEHFDHVGKEADQSQGITVRQAHERLDMIERRKPLYSPAFAGFASACACASFVFLLGGGPFDMIGAFIGAGLGHWLRRRLFAHHLNQFFVTFVCVAVAALACTGTLRLIGIFEPVALQHDTAYIGAMLFVIPGFPLITGGLDMAKIDFPSGIQRVAYVLCIILMATLAGWMVASIVHLNPEGFEPLGLNPVVNCLLRFVFAFIGVWGFSTMFNSPQRMCLVAATIGAITDTLRLEIVDMGVPAEAGAFIGALLAGLLASAWRSAVHRSWLAPHLGYPRICLTVPSIVIMVPGLYMYQAMFHLGQFDTLNALDWAFRAFMVIICLPIGLAMARVITDKSWRYDI
>NZ_AP012330.1|WP_004222809.1|20962_23719_-|phosphoenolpyruvate-carboxylase
MTIENEQITPADAAIVSSGTGTKGPEERDLPASLKEEMDLCLQILREVLGEFDEKLLAKFDEVREHALNASAERFSGILTDTNPNQDDLQKVVDIIDKTDVHEAQLLARAFTTYFHLANLCEENYRVSVLHSREAAVDDTQAVDPVNEMTCAYHQLINEMGPAKAKELLDQLEFHPVFTAHPTEARRKAVEGKIRRISQLLATHKLLGGSDKKENSRRLFNEIDALFRTSPIALKKPTPVEESETILDIFDNTLFYTIPQVYRRFDDWILGDKAGLVPPVCPAFFHPGSWIGSDRDGNPNVTAKVSRQVARKFSDHVLGALQIETRRVGKNLTMEAETTPPSAELKSLWNHQKEMSERLTDKAALISTKELHRAVMLVMADRLKATIDRDADLMYHSCEDYIADLKVVQRSLAEANAKRSAYGPLQDLIWQAETFGFHMVEMEFRQHSVVHSRALEDIREHGLHGERGELQPMTHEVLDTFRALGSIQKRNGIKAARRYIISFTKSAQNIRDVYELNRLAFSHPKDVPTIDVIPLFEQLEDLQNSVDVLEEMIKIPEVQARLKATGGKMEVMLGYSDSSKDAGPTSATLALHSAQERIAKWAESHDIDLTLFHGRGGAVGRGGGPANRAVLAQPVGSVKCRFKLTEQGEVIFARYGNPALAIRHVESVAAATLLQSAPSVEKRNTDMTAKYADMANKLDEAAHNRFLDLLNTDGFAPWFSTVTPLTEIGLLPIGSRPAKRGLGAKSLDDLRTIPWIFSWAQARINLAAWYGLGTACEQFGDLNTLRQAYEEWPLFSTFIDNIEMSLAKTDERIAKMYLALGDREDLNKKVLDEMELTRKWVLEIVGDKWPLQHRHVLGQAIRIRSPYVDALSATQVLALGSLRKRVDKEELTHGQKENYTYLILCTVSGVAAGLQNTG
>NZ_AP012330.1|WP_004222806.1|19271_20201_-|hypothetical-protein
MTTPAFAVNWWQVGWIVANNVIDRVVNLDGQSSNDQYSTYMVSPSIVFNNGTNGGEFYMRPQVSSRVTSFEMHAHRANPVDFGANIVLALSTTSGKRVINKTVGTNQYVSYTRSSSDGTGTWDARFTEDDSGKNWQCYYRQYYGNGRSLPTIIDVPNTNLIDYLANDGTTFRYNANPDQPRTTKAPTLDIKQLNNQFYDEKSGISVDYLRDYNTGDDIIFEDIIDKIQFNPNENNTSLFFLLDNEYIEWKFNGNITNKYKKEDRINLHFKVITVKQYKGITFESIDFFKDSSNGINKQGPYPCISDYLK
>NZ_AP012330.1|WP_072043183.1|36171_36666_-|cell-division-protein-CrgA
MLMADEELHETTADDQNDLQSTDDTAAVEESNETVQDAAEETTVDSTSDESADSDDDDDHDIPMDRVEAVLNATADKDSLSPQMQRMMNRQAENTRRVEETIKGTKSNPRWFVPLFCALMIIGLIWAVVYYLTSDYPIPNIGAWNLAIAFAIIMIGFIMTMWWR
>NZ_AP012330.1|WP_022245029.1|36782_37586_+|DUF881-domain-containing-protein
MAKHTGKHTAKRSKAAGVAAFLVLMFSGFLLATNLRVNRSVVVTNDTAELVEQRVKKVNSLQTEVDALSSRVNDLSKTLNSQDDADQQDSESAGNGTMLPAVEGPGLVVTLDDSPLWENMVDSSGSTSNINDYVVHQQDVEAVVNALWAGGAESMMIMDQRVLFNSAVRCSGNVLLLQGKKYSPPFTISAIGPVETMKKALDNSQEVTIYRQYVSAFGLGWQVDEKEKLHFDATDALQQPLQYAQAMNNETDGSQQTDETQESQEGK
>NZ_AP012330.1|WP_004222854.1|37589_38681_+|class-E-sortase
MKHVAPKQRRKSVVWTILGILAELMLTAAAVCALYIAWQMWWTGVQAEHNQIETRQSVSWSDPGQSDSVTIAQAQEGDPPTQPQSAQEGELIAQVYIPRFGSQWQRNLVEGTSLTELNKHGLGHYKDSQMPGQVGNFAFAGHRNGYGQPLGDVDKLQEGDPIIVRTQDYWYVYHYASYKIVLPTDIEVVAANPENPGATPTKRMLTMTTCEPKYSTPTHRWISYAEFSYWAKVSDGIPQELASTDSNGKVKFVNNEKSSIVASVSSLKPWILGALAAYAIIFLSALVAWRWPYLADVRAGRREKPEFSLYGGLMRLQPGVLPIRLVLMALLIFAAAASCFEWLFPWAATNIPALQEMSNYTAI
>NZ_AP012330.1|WP_022245027.1|38926_39571_+|glutamine-amidotransferase
MTDSARILVVDNYDSFVYTIVGYLKTLGAAVTVVRNDAIDPGEADVIDEYDGVLISPGPGAPADSGASEGMIRLCAEQSKPMFGVCLGMQALAEVFGATVSHAPTIMHGKTSLVEHIDDEIFEGVANPMTATRYHSLAVEPDSVPEELVVTAWTQVDHIVQGIKHCSKPMYAVQFHPESVMTQDGYRLLANWLKVCGQENAVERSKGLQPKVAA
>NZ_AP012330.1|WP_004222861.1|39782_41870_-|Stk1-family-PASTA-domain-containing-Ser/Thr-kinase
MNINMPTSLAGGRYQLGQLVGRGGMAEVHVALDTRLGRTVAVKIMRADFANDKIFLERFRREAHSVAQMNNPNIVNIYDSGEEVVATETGQTEHLPYLVMEYVKGQTLRDILKVNGALSQRDAEQVMMGVLNALEYSHRMGIIHRDIKPGNIMISEQGVVKVMDFGIARALDDSAATMTQSQGVVGTAQYLSPEQARGESVDMRSDLYSAGCVLYEMLTGRPPFTGDSAVAIAYQHVSEVATPPSSVVPGLPKMWDSICAKAMAKDRQNRYATASEFKNDLLTFMNGGVPMAAAFNPLTDLTNMKARKQAEMDANTVAMTPAGETAATQAFNPVTGQFEAVPNPQNGVSTKTRAEQRAEAAKARKKKQIIIGSVVGGLVALLVILGVFFMLNKSDSTADMVEVPDFTATANISEARVEEQLAAKGLKLDAREDSDSSEPKGTITKQNPAGGKKVAKGSTVSVWFSTGPQSVAVPDVSNKSQDDAKSILEAAGFKVGNVRTVDNASIEKDKVVSTDPAAHSKQTKGTIITLYISSGMTKIPDNLIGQPKDTVIEQLKQAGLTQITIESEYSDSIASGAVTRVEPGVGSTVEAGTAVTIWVSTGKQQISVPSVVGMGYAGAKSLLESYGFQVTVSGPEDGTVTGMSPTAGTQSDSGATITLTTKSSSTNNGGNNGNNGGNGGNGGNTDGGNNTPEGN
>NZ_AP012330.1|WP_004222862.1|41866_42811_-|serine/threonine-protein-kinase
MKLIEGQLIHRRYRLDARLAQGGMGEVWKGYDIQLGRPVAIKALRGDLGVTQEAKLLRLRAEAHNSANLAHPNIAALFEYYEHDGIGFLVMEYVPSKSLADLFHEQNGPMEPTRLLPILIQTARGLFVAHSHGVIHRDVKPANIMVSDSGEVKITDFGVSYSTNQEQITQDGMVVGTAQYISPEQAQGQHATPQSDIYSLGIVAYEGLCGHRPFTGATPVDIAAAHVNNPVPPLPDSVDVQLREFVMSMLSKDPLDRPKDALTVSRTLSRIERRLLDQQTQLADTMVVPTGGRLPRRVVSRPHISLSTDGKEQG
>NZ_AP012330.1|WP_004222865.1|42807_44274_-|serine-hydrolase
MNKSLRQLFTIVVALFVILGMSTTIITAIRANQLNNDPRNTRALYHEYGAPRGAILASDGSVIAKSDPSNDAFSYQRSYTAGELYAPVTGFFSISQRGWNGIEASRSSLLSGQSDQLVWQRFKSLFTGQENKGATIETSIDPKIQQAAYNGLANNDGAAVAIEVKTGRILAMASTPSYDPNQLASHDTSEANGNYSTLSQDESNPMLNRATSQLYPPGSTFKTVVAAAALETGEYQTDTEIPAGSSYTLPGTVTQLTNAVSQADGSDGKITLEDAMAYSSNTAFAQLGVALGDDKVSSMAKKLGFDSPITVDGSDSTGTPWMSVASKFPTDTTDDKLALASIGQGDTVVTPLQNALVAATVANGGKVMQPTLVDRVRSSDLSVISQTKPQVMSRAFSSGTANKLTQMMEAVVTKENPNLAIDGVQVAAKTGTAQIGDGNTSIDGWVVGFAPADDPKIAVAVVVHNVDLYGSFAAGPIMKAMMQEALAE
>NZ_AP012330.1|WP_004222867.1|44270_45794_-|FtsW/RodA/SpoVE-family-cell-cycle-protein
MMATRLKQFGLLLFSMLICGVAFFQMFERTTGGFPQNYLWMLAFVGALFLTSWGLPLRFQPYANQAIMCCVMVLTGTGIMMIARIDQDSNTSVAFKQLLWLSIALVLANLLVIFMKDYRVLRRFSYVSMVIGLVLLLSPMLPVIGSEQYGARIWVKIPGLGSFQPSEFAKLFLAFFFASYLYDHRDQLAVGGKKVLGLQLPRIKDLGPIIVVWIVSMGVLVVQHDLGTSLMFFAMFVSMLYVATGRTSWIVIGFIAFAVGAFAAANIFSHVGARVDAWLHPFDSAQYNKEYGGSYQLVTGIFGLASGGLMGTGLGQGHPSLTPIANSDYIYAALGEELGLTGLMAILMLYLLIIAAGMITAMKIKDGFGKLLASGLVFTMAFQVFTVVGGITLVIPLTGLTLPYMAAGGSSLIANYMLAALLVVISNSANKPESDIDSDTFQYEAMQALRARKQSRARRSVASAQASAQATEIISTETPVSGTPVVPPAPPSGTPNVSDSMSEGSQA
>NZ_AP012330.1|WP_033524170.1|45790_47395_-|serine/threonine-protein-phosphatase
MPTSPASQPLFMYSTVVSDVGTVRSNNQDSAFAGEHLIAICDGMGGHAGGDTASTIAIRSLAHIEQDNVQGDVQIIAHMMETSVMAAHDAIVGKAKRERRLAGMGTTVTSVALVAGYWVLAHIGDSRAYLLHDGRLIRMTSDHSYVQHLIDTGRISEAEARNHPQRNVVMRVLGDFDIDSSPDIAIRKAHPADRWLLCSDGLCGVLEDSTLQEVLSACSDQEECAQQLVSMALRAGSTDNVTAVIADATLALDADAFDLPHQTPLVGGAASASLEPIADIINEPVASAPALREGKKSPAARAAALRNGKNPNEDDNPPEQRVAQPSTVREENGDRTNPDTGEIPVVQKDDGRISADPNDPEVAKAIRNEHIEQRKTKRTRTRRNRVIAIIVTIVVLLGLAGGAFATYRWSQTKYYIGDDNGEVAIFQGVPTSLFGFQLSHAVTDTHMKTSELPPSWQEQLAQGISFDTYGEAKTHTRLIKKQLKQQQDEAAQKEQDKANGESDNKSSGTTSDKSSGKSDKSDDASANKSGGDQS
>NZ_AP012330.1|WP_004222871.1|47400_47916_-|FHA-domain-containing-protein
MLTELTFAILKYGFLVLLWIFVACTVRSLYRDVETLSPRKSRAHRRKERRARKAVEAPAPVAVPAPVVSATSSAKPTLLVIIDGPLAGSSVPLSGNTITLGRSASNTVVLDDEFVSSHHARVYTDPATGKWAIEDLGSTNGTVVNQQRLNAPMILGSRVPVRIGATTFELR

Crispr_ID: NZ_AP012330_2

• CRISPR_ID: NZ_AP012330_2
• CRISPR_location: 56485-56610
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_AP012330_2

Consensus_repeat	Method
CCGCCATTTTCCGTAGGAAAATTCAAGCGGCGCGAC	CRISPRCasFinder

spacers of NZ_AP012330_2

>2.1|56521|54|NZ_AP012330|CRISPRCasFinder
GCGAGGAGGGAGGAAGCTCTGGGAGCTTCCGTACGACGGAGCCATCCTTAAATT

CRISPR arrays and Neighbor proteins around NZ_AP012330_2

CRISPR arrays

The CRISPR arrays of NZ_AP012330_2

>merge|NZ_AP012330|2|56485-56610|CRISPRCasFinder
CCGCCATTTTCCGTAGGAAAATTCAAGCGGCGCGACGCGAGGAGGGAGGAAGCTCTGGGAGCTTCCGTACGACGGAGCCATCCTTAAATTCCGCCATTTTCCATAGGAAAATTCAAGCGGCGCGAC

>NZ_AP012330|2|2|56485-56610|CRISPRCasFinder
CCGCCATTTTCCGTAGGAAAATTCAAGCGGCGCGAC	GCGAGGAGGGAGGAAGCTCTGGGAGCTTCCGTACGACGGAGCCATCCTTAAATT
CCGCCATTTTCCATAGGAAAATTCAAGCGGCGCGAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP012330.1|WP_004222909.1|66693_68148_+|FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|215457
NZ_AP012330.1|WP_004222922.1|70351_71308_+|aromatic-amino-acid-DMT-transporter-YddG	unknown	unknown	gnl|CDD|183277
NZ_AP012330.1|WP_004222887.1|54957_55941_+|EamA-family-transporter	unknown	unknown	gnl|CDD|273359
NZ_AP012330.1|WP_004222880.1|52818_53475_-|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|225107
NZ_AP012330.1|WP_004222871.1|47400_47916_-|FHA-domain-containing-protein	unknown	unknown	gnl|CDD|238017
NZ_AP012330.1|WP_033524159.1|48859_51262_+|S9-family-peptidase	unknown	unknown	gnl|CDD|366030
NZ_AP012330.1|WP_004222890.1|56024_56246_-|hypothetical-protein	unknown	unknown	gnl|CDD|225462
NZ_AP012330.1|WP_033524171.1|56894_58199_-|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl|CDD|234642
NZ_AP012330.1|WP_155114916.1|53482_53647_-|hypothetical-protein	unknown	unknown	unknown
NZ_AP012330.1|WP_004222903.1|64709_66209_-|amino-acid-permease	unknown	unknown	gnl|CDD|224038
NZ_AP012330.1|WP_004222926.1|73777_76561_-|YhgE/Pip-domain-containing-protein	unknown	unknown	gnl|CDD|224428
NZ_AP012330.1|WP_004222902.1|63478_64489_-|asparaginase	unknown	unknown	gnl|CDD|199207
NZ_AP012330.1|WP_004222885.1|53779_54859_+|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|225176
NZ_AP012330.1|WP_033524170.1|45790_47395_-|serine/threonine-protein-phosphatase	unknown	unknown	gnl|CDD|223704
NZ_AP012330.1|WP_004222911.1|68341_69442_+|zinc-metalloprotease-HtpX	unknown	unknown	gnl|CDD|235102
NZ_AP012330.1|WP_004222873.1|47943_48651_-|DUF3662-and-FHA-domain-containing-protein	unknown	unknown	gnl|CDD|378850
NZ_AP012330.1|WP_004222899.1|60901_63436_+|HAD-IC-family-P-type-ATPase	unknown	unknown	gnl|CDD|319844
NZ_AP012330.1|WP_152595400.1|51551_52736_-|ATP-binding-protein	unknown	unknown	gnl|CDD|226951
NZ_AP012330.1|WP_004222924.1|71450_73775_-|YhgE/Pip-domain-containing-protein	unknown	unknown	gnl|CDD|224428
NZ_AP012330.1|WP_004222897.1|58536_60522_+|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl|CDD|273938

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_AP012330.1|WP_004222909.1|66693_68148_+|FAD-dependent-oxidoreductase	gnl|CDD|215457	PLN02852, PLN02852, ferredoxin-NADP+ reductase.	1.21497e-105
NZ_AP012330.1|WP_004222922.1|70351_71308_+|aromatic-amino-acid-DMT-transporter-YddG	gnl|CDD|183277	PRK11689, PRK11689, aromatic amino acid efflux DMT transporter YddG.	3.45572e-128
NZ_AP012330.1|WP_004222887.1|54957_55941_+|EamA-family-transporter	gnl|CDD|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	5.69184e-24
NZ_AP012330.1|WP_004222880.1|52818_53475_-|response-regulator-transcription-factor	gnl|CDD|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	9.43944e-33
NZ_AP012330.1|WP_004222871.1|47400_47916_-|FHA-domain-containing-protein	gnl|CDD|238017	cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).	2.14892e-18
NZ_AP012330.1|WP_004222873.1|47943_48651_-|DUF3662-and-FHA-domain-containing-protein	gnl|CDD|378850	pfam12401, DUF3662, Protein of unknown function (DUF2662). This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with pfam00498.	6.93655e-42
NZ_AP012330.1|WP_004222897.1|58536_60522_+|trypsin-like-peptidase-domain-containing-protein	gnl|CDD|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	1.15215e-92
NZ_AP012330.1|WP_004222890.1|56024_56246_-|hypothetical-protein	gnl|CDD|225462	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only].	1.69487e-12
NZ_AP012330.1|WP_033524171.1|56894_58199_-|tRNA-guanosine(34)-transglycosylase-Tgt	gnl|CDD|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	2.26264e-165
NZ_AP012330.1|WP_004222903.1|64709_66209_-|amino-acid-permease	gnl|CDD|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	1.27569e-172
NZ_AP012330.1|WP_004222926.1|73777_76561_-|YhgE/Pip-domain-containing-protein	gnl|CDD|224428	COG1511, COG1511, Predicted membrane protein [Function unknown].	1.59232e-101
NZ_AP012330.1|WP_004222902.1|63478_64489_-|asparaginase	gnl|CDD|199207	cd08963, L-asparaginase_I, Type I (cytosolic) bacterial L-asparaginase. Asparaginases (amidohydrolases, E.C. 3.5.1.1) are enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases. This model represents type I L-asparaginases, which are highly specific for asparagine and localized in the cytosol. Type I L-asparaginase acts as a dimer. A conserved threonine residue is thought to supply the nucleophile hydroxy-group that attacks the amide bond. Many bacterial L-asparaginases have both L-asparagine and L-glutamine hydrolysis activities, to a different degree, and some of them are annotated as asparaginase/glutaminase. One example of an enzyme with no L-glutaminase activity is the type I L-asparaginase from Wolinella succinogenes.	3.37728e-117
NZ_AP012330.1|WP_004222885.1|53779_54859_+|alpha/beta-hydrolase	gnl|CDD|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	2.11816e-38
NZ_AP012330.1|WP_033524170.1|45790_47395_-|serine/threonine-protein-phosphatase	gnl|CDD|223704	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms].	3.24262e-67
NZ_AP012330.1|WP_004222911.1|68341_69442_+|zinc-metalloprotease-HtpX	gnl|CDD|235102	PRK03072, PRK03072, heat shock protein HtpX; Provisional.	1.65559e-177
NZ_AP012330.1|WP_033524159.1|48859_51262_+|S9-family-peptidase	gnl|CDD|366030	pfam00326, Peptidase_S9, Prolyl oligopeptidase family.	1.36351e-42
NZ_AP012330.1|WP_004222899.1|60901_63436_+|HAD-IC-family-P-type-ATPase	gnl|CDD|319844	cd07544, P-type_ATPase_HM, P-type heavy metal-transporting ATPase; uncharacterized subfamily. Uncharacterized subfamily of the heavy metal-transporting ATPases (Type IB ATPases) which transport heavy metal ions (Cu(+), Cu(2+), Zn(2+), Cd(2+), Co(2+), etc.) across biological membranes. The characteristic N-terminal heavy metal associated (HMA) domain of this group is essential for the binding of metal ions. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	1.11235e-131
NZ_AP012330.1|WP_152595400.1|51551_52736_-|ATP-binding-protein	gnl|CDD|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	2.05694e-10
NZ_AP012330.1|WP_004222924.1|71450_73775_-|YhgE/Pip-domain-containing-protein	gnl|CDD|224428	COG1511, COG1511, Predicted membrane protein [Function unknown].	2.21029e-93

Protein sequences

>NZ_AP012330.1|WP_004222890.1|56024_56246_-|hypothetical-protein
MPNPFHLSLVVSADCTEYGLAGEEFTVNAAGQSYISYADYAIAVVDEAEQAAHVGEPSPCTPSSTSFSCAVHV
>NZ_AP012330.1|WP_004222887.1|54957_55941_+|EamA-family-transporter
MAKQTSGQTSQSQKTSESQKTAKKTAKKTEHMLEQTPKSLLIGTGMTLLGGAMWGMNSTVAKLLMRDYQLDPIWLSCVRALFASLIFLVGSAITTPQKLAGAVKDVKSYPKYLVTTLICVLLVQVSYLMTIDWTNSGTATVLQTLNLIFVLAWVCLRGKRLPLKRELVGVLLAFAGTFLIATGGNFASLSLPWQGLAWGLVDAVSTAAMSILPVMLMLKWGNMTINGITFLMSGLILCPFAQPWANIPALDARGMLLLLYTIVCGTFLAFWLYMAGVMRVGAVRATMLGTSEPVMATVTAVAWAGEAFTFTDLTGFAMIIIMVFLVR
>NZ_AP012330.1|WP_004222885.1|53779_54859_+|alpha/beta-hydrolase
MEFMTITLIDEARYDAEMDETVLPALRNCMTEGWMEPATVDWDDNMLPKLEHPGRLHYYCYDAHKFDALREDGASGVFRGAVVISHGFTEFGRKYSEMVWYFLLAGYSVCVFEHRGHGHSTHDMSNPSLVWIDDWRRYVADFATFAQTVGRETAGDGPMYLYCHSMGGGIGAAVLERYPSLFDKAVLSAPMIAPVVGMPTWIARIVVGVICGLGFGKSRVFGHADFDGNLNLDDYHGASEARIRWFHKQRLADKSCQTNAATFDWANQAMALSRAVLKPDMCGAIESPVLLFQAGRDVWVLNGPQDDFVERVSEGGGFIEKVRYSQSLHEIFSMPNAVFGPYLDKILDFLAASNASLAE
>NZ_AP012330.1|WP_155114916.1|53482_53647_-|hypothetical-protein
MKFVSLLMVVTLSLTGTPTYAHAAATPVDNNGDISAAKDSNCPTWLQWLCGKGK
>NZ_AP012330.1|WP_004222880.1|52818_53475_-|response-regulator-transcription-factor
MTTSEKHPKIHRIALVDNDPRALDSLSAVIASKVPTAYVVWTATSGGEAIERCQDANGHVSLLILDMSMEGLQGPATCHRLRLMGQRMPILGATSFSINSYRDKLVEAGAQGLVGKENADQLAQIIMRMCNGEVMEGFEPPALANLRISREADTTPALTVREEQIISLCAEGMLDRDIAEHLGISEATIRKHMQSILRKLNCKTSRQAVALWVRSNAL
>NZ_AP012330.1|WP_152595400.1|51551_52736_-|ATP-binding-protein
MLIVLAWTIYGVCYEPPTDIFGVIWVAMLVTALVPSPLFLKSTSVAILVIASIGDLFTPYAHLGNSLPAQLYAYGMLAYSTNAIIVATLLTYYVVNILLIDPPGPNTNPVAMVSMYAMVLLLGRALSWSEKTTQKSFEAAQNKNRLQELESRARIADAIHDAVTGDLSAATFVAQRHIGGNSSSPGVAADPANATTTTATATADAEDWRQINEYILSALTNVHRVIDELNMDATTLPGDADGEALANLLRATLDDGDRRLRKLGFNITSIRHCAGGKPSASQAIAELANNLLREIYANIARHAAPGSKVDLSVMLRPNAIEITQINPMKEDMAGADERDDELPGGHGLASFKKQLESYQGTLTTSAQDGSWTLFAYIPVTVIDDSPGLLEQVQV
>NZ_AP012330.1|WP_033524159.1|48859_51262_+|S9-family-peptidase
MTDAIRQFPRKKARTLRFSCGAPRSARVIADGSRALFLRSDGPEDTVTSLWMSVIDEDGNIGEIPLADPRVLLADADAEDVPAEEKARRERAREGGSGIVSYCVDGAGNRVTFTINGQLFLTDLTAGATRAITIEEDELKPVLNPRISPDGRHIMYTTGTYLVDVDLANDEETGDAISVVASAPQNGEWKIGLAEFAAGEEMDRYDGFWWSPDSKYVLFETYDESPEPIWHLSDPANPTNPAQANRYPQALTANADVRLTLLELGYDSDNCCYGAIANEVQWDHESYEYLAAVSWSEGHDPIILVQDRLQQHDQVLAIHVGEPIATMRDAENGFTDDNGDEVETFSIAIPEYAEGERPGTTRVLEEHGNDYWLDLIHGTPAFTPDGRLICAMNDMDVDTNRLTVDGTPFTPAGLQVREVLDVTDDDVLCVVQRTPEILPESDLPFLWQSNASDHDARSFDVVSIRYDGTWEPLTYAPGQWSMSRAGNGCVVTGRGMDDATVQMQHCMNIATTDENGTDVASMVVAPIENHAETPGFTPNVHFTRLGERELYTAIVLPSSDSEYAHEAILPVLMKPYGGPGFQQVIESQSFYWDAQWWADQGYIVVTTDGRGTTGRGPQWDRAIYETMKSVTLEDQIDAVRALPEALEALAGENAAANVPQPDLSRVAMIGWSYGGFLSALAVLEAPETFAAACAGAPPTDWTLYDTHYTERYLGLDSAVYERNSIIADAPQLDRPLMLIHGFADDNVTIAHSLRLSQALMATGRKHTFLPLTGITHMTNDETVAENLLILQRDFLAEALG
>NZ_AP012330.1|WP_004222873.1|47943_48651_-|DUF3662-and-FHA-domain-containing-protein
MSVLDRFEKSVEGAVNGVFAKFGSKDLQPVDLSSALEREIDKEAMPVTRDRTVAPNEYRFKLSTPDFNNIVEWGAEALANELADNLTQYAKDQHYAFVGPVVVIFEEDLDLTKSNFKLTSESVQGNTVPVTTDAQTEDCPMLEIGEHQYLLTESKTIIGRGSDCDIVIDDPGISRRHMQIDITDNGNTVIARDLGSTNGMYVEGHHVEAATLLDGNTITIGRTRILYWASSQDQE
>NZ_AP012330.1|WP_004222871.1|47400_47916_-|FHA-domain-containing-protein
MLTELTFAILKYGFLVLLWIFVACTVRSLYRDVETLSPRKSRAHRRKERRARKAVEAPAPVAVPAPVVSATSSAKPTLLVIIDGPLAGSSVPLSGNTITLGRSASNTVVLDDEFVSSHHARVYTDPATGKWAIEDLGSTNGTVVNQQRLNAPMILGSRVPVRIGATTFELR
>NZ_AP012330.1|WP_033524170.1|45790_47395_-|serine/threonine-protein-phosphatase
MPTSPASQPLFMYSTVVSDVGTVRSNNQDSAFAGEHLIAICDGMGGHAGGDTASTIAIRSLAHIEQDNVQGDVQIIAHMMETSVMAAHDAIVGKAKRERRLAGMGTTVTSVALVAGYWVLAHIGDSRAYLLHDGRLIRMTSDHSYVQHLIDTGRISEAEARNHPQRNVVMRVLGDFDIDSSPDIAIRKAHPADRWLLCSDGLCGVLEDSTLQEVLSACSDQEECAQQLVSMALRAGSTDNVTAVIADATLALDADAFDLPHQTPLVGGAASASLEPIADIINEPVASAPALREGKKSPAARAAALRNGKNPNEDDNPPEQRVAQPSTVREENGDRTNPDTGEIPVVQKDDGRISADPNDPEVAKAIRNEHIEQRKTKRTRTRRNRVIAIIVTIVVLLGLAGGAFATYRWSQTKYYIGDDNGEVAIFQGVPTSLFGFQLSHAVTDTHMKTSELPPSWQEQLAQGISFDTYGEAKTHTRLIKKQLKQQQDEAAQKEQDKANGESDNKSSGTTSDKSSGKSDKSDDASANKSGGDQS
>NZ_AP012330.1|WP_033524171.1|56894_58199_-|tRNA-guanosine(34)-transglycosylase-Tgt
MSENLIEHPRGAEPGKPGRRDAFYFEQKTRLPDAADGKGRGGARYGRTGIIHTPHGDIHTPAFVPVATQAAMKAVLPETMKDLGAQCLLSNAFHLYERPGEQVLDEAGGLAKFMNWNGPTFTDSGGFQVLSLGAGFKKTLAMDVTGMKSDDVIAEGKERLAFVDEDGVTFKSPLNGSLHRFSAEISMGIQHKIGADIMFAFDELTTLMNTRGYQERSVERTYRWAQRCVAEHKRLTEERVGKPYQALYGVVQGANYEDLRRHAAEQIASLDFDGVGIGGAIEKRIIGDTCAWICDAMPESRPRHVLGIAAVDDIFACVENGGDTFDCVAPARCGRNGAIFTRGGRYNIKRAQFKHDFGPLEEGCDCYTCTHYSRAYVDHALRAREFNGFTLATIHNEHFFVKLLDDIRASIDGGYFNEFRDETLTRFYANGSRG
>NZ_AP012330.1|WP_004222897.1|58536_60522_+|trypsin-like-peptidase-domain-containing-protein
MAEENDQNAVQPQNDEQQTVPMPPVDAEQTQTYAGEPYAAESATEPIDVQGGIEDQPTAAMPVANDGASAESAAAAGDTPDYASAADERTVVGGSTQDAPAQQYRPAPEYGAYGPVPTQPADGTAAANDTANGAPNIPPQPQYGAYGQAPQQPQRPRNPFFGNPYVGGNQQNDQQNAQSNNGNPFMKPAAQGGANVPPAAPNTPNNGNPFGNPNNGNPFGAPQQNGAATKPKSASGVTGHVMTGVVAALVSAALCLGVGYAAITNGWVTVPTSSSLTSVKSNTSGSGSAKAKSGEAADWSAVAKEVSDSVVSIDVATSDGSAKGSGAIISDKGYIVTNNHVISGAKQIQVTLANGTIYSAQIVGTDTTTDLAVIKLDNPPSNLKAAEFADSDNLAVGESVMAIGNPLGYDDTATVGIVSALNRPVTVSDDNNNDIVTNAVQIDAAVNPGNSGGPTFNAAGQVIGINSSIASTTTSSGTAGSIGIGFAIPSNLVKRVANEIIDNGTVQHVALGVTIKSSTVEADGVTRGCTQVQSVVDNSPAAKAGVKAGDSIVAFNGKAVNNNYSLLGYVRASAMNDKVTLTVVRDGNTMELDVTLDQEESQTNSANSQNQRNNGNDGQSQNGNGNGYGNDGNGNGNGQSDGNGSNGYGDGGGLFDPFGLW
>NZ_AP012330.1|WP_004222899.1|60901_63436_+|HAD-IC-family-P-type-ATPase
MRRIIDICWRLCKQVPLLPITILSAIPLALLGEWKPWGEAAWDSWISQVGVDGLSAFNPGVGQWIVIALVAYTIVVTVRGMIDDLRHGHVGVDLLAVVAIASTVAVQEYWAAWAVVLMISSGEAIEEFAQSKAESNLTALIDAAPRTAHVVVLPGMRGHVHASGSEHTADVTADGFRTVRVSDSGETDNQDGEKRAFASESPETDTKGASQTYDAAGERFETVPVDQVQLGDVILVLPGETVPVDGELLSGVATLDLSNINGEPVPREVYAGARVMSGAVNGSTTLTMRATQLAHDSQYQKILELVSSAQESRPAVVKTADMLAVPFTVLSLAIAGIAWVVSGLPLRFAQVLVLATPCPLLIAAPVAYVAGTGRLAKAGILIKAQDVLENLGRVSHIFFDKTGTLTVKQPQVVRVEKPFGTSSPFNEDHILMMAGVVESYSVHILSKGIAAAGRKAMDDLYARYASGQRLCAERDLPGHGRDYPVVKNIVEDSGKGVSGEVNGHRVRVGRFAYATADESGFMPVLHMPNATYHVSDSPESDNQTGEMYARMSDSPETDIQRTEMRAYVSDSPESDTLGTRGGVSGEGRSTVVAPSVSVAAAQTASARKPETVGSLFAPLAPDEMAAYVAIDGKLAARIVLRDVPRANTKRSLARLHELGIKELSMLTGDKAASARIIANEVGIDDVQSELFPEDKVAAVKNATESMRQNQSMPARIIQRITGESKNRQVTMMVGDGVNDAPVLAVADIGMAMTDGTSTAASESAQVVIMNDDIASVPRAIAIARRTKNVMLQAVLIGLGLAIIGMVAAAFNLIPVVVGAFMQEVIDVVSILWALTVLFDRGESA
>NZ_AP012330.1|WP_004222902.1|63478_64489_-|asparaginase
MRIHITYTGGTIGMIDSPNGLIPGADTRGWLFRLLEDAHMDASLFTFTELDPLIDSSNATPDNWQTMVDDLRAHHDDADAFVVLHGTDTMSYSSAALSYALADFGKPVIFTGSQHPLGKIESDATANVTGALNAAMSGRFHGVGLFFGHHLFAGNRVSKSSSWAFEGFSAPSVGPLARTGTPWHWYAGDAASAGYGWTSPQPYSRHDVAVIDMAPGISAARLEAMLTPRPEAVLLRAYGVGNVPSDEPGLTDVIADVLHDGVPVVIASQCQQAEVLLGHYETGDAIARAGAIGSGDMTLEATYAKIMFLLSQGVTRVDFGKWMRVSIAGEISPSSL
>NZ_AP012330.1|WP_004222903.1|64709_66209_-|amino-acid-permease
MSNSNTSSNATQQSSAQKQDKSDAGYAKDLKPRHIQMIAIGGSIGTGLFLGAGGRLVQGGAGLAIAYAVCGIFAFLMVRALGELAIRRPSSGAFVSYAREFLGEKGAYVTGWLFFLDWSVTVMADITAVAVYFHYWKAFQGVPQWLIALCALALVFVLNLLSVKMFGEAEFWFAAIKVATIISFMVIAIWAIVTGAPVGDAHAGVANITDNGGLFPNGIAPVFALTLGVVFAFGGTEMVGVAAGEAKDAEKVLPKAINSMIIRIFVFYVGSVVLMALVLPYTAYSSNESPFVTFFSGIGIPHAGDVIQVVVLTAALSSLNAGLYSTGRTLRSLAVAGSGPRFAARMNKHHVPYGGIIITSALGLIGVVMNAVLPADAFEIVMNLAGIGIAGTWAAILVTHLAFLKKVKTGEEIRPDYHMPGAPYTNYISLIFFAVVVLSNLTSAAGRWTLAMFVVVVIAMVAGWFYMRGRINGDLMDEMLDNNGNDVPDVLETTEVPGK
>NZ_AP012330.1|WP_004222909.1|66693_68148_+|FAD-dependent-oxidoreductase
MTETNELRIAVIGAGPAGVYSSDIFLRQLKKLGEELGLGTAARIDLFEKLPVPFGLVRYGVAPDHPSIKFIASALEKTLDNPDIHLYCDVEFGKDVTLDELLERYDAVLFATGAVEDKPLGLPGADLDGVYGAAKFVEWYDGYPTGAREWPLEAEEVAVIGGGNVAMDVARELMRNADDLKERTDIPDNVYEGIKANKARVLHLFIRRGVAQAKFSVQELREMEKLPGVQLIINEDDFDLDEDTIEEAGKDKLTRQMVEELFTIREMAEDMEDDGDVDYEGNTADRKYYVHFNSAPVEVLGEDGKVVGIRVEKTETSADGKMSRTGEFEEYPVQAVYHAIGYKPATAPGIAYDERHAHLANANGDGRITTTASAEDGAQVRERLYATGWAKRGPVGLIGSTKSDALLIVTNMLEDLSKAAEGGRVAADRDPESIDRLLASRGVKPIDFAGWKKVDAYERADGAKEGREHKKVIDPEQMRALAHA
>NZ_AP012330.1|WP_004222911.1|68341_69442_+|zinc-metalloprotease-HtpX
MNGKLQVHGHCNGLKTTLLFALMWGVIMLIWWATGGSQRTLGIYILIGLGSTFASYWFSDKLAIASMRAQEVSEQEAPVLYKIVRELSAKAGKPMPRIYIAPTMSPNAFATGRNERHAAVCCTQGILQMLNEREIRGVLGHELMHVYNHDILTSAIASAMATVISYLGYSLMYFGGGNSRDDRNDSSSNGLGLLGVLLSTILAPIAASLIQMAISRTREYDADEDGSMLTEDPEALASALNKISNGAETMPMQKTAGTQSVAAMMIANPFSAEGFSKLFSTHPPTSDRIARLMQMGQEMRQQGVQSGYLAGGYATSGVAAADIRQGGRSAMAGAGGPQFGTQYGPGHDSGGSAGRYSRDYSQRPRG
>NZ_AP012330.1|WP_004222922.1|70351_71308_+|aromatic-amino-acid-DMT-transporter-YddG
MNTDQKLPAESAGERPSNPLFGHAISHAATLIGLFAIVLWGFMAGLVRLVSESFGATLGSALIYTVGGMLLLIVRRPKPISQAPRKYLVAGGLMFIAYEASISLSIGLATTNAQSVEVSLVNYLWPTLLVLMTAAVSHKRGSVSEALPGAIVATVGVAMAVGGENLDVQEAVANIASNPLPYALAFAGAFIWAIYATVTPSMSDGYDGTTIFFCCVAVVLWIIHFVSGDGLPAVAPGIGGYISLLACAASIAGGYACWGYGMLHGSMETLAIGSYATPLFSTASSTLLLGVTLGMPFWIGVALVVVGSLINVWFARRR
>NZ_AP012330.1|WP_004222924.1|71450_73775_-|YhgE/Pip-domain-containing-protein
MIWGIFKRDMCHATRNVIAVIVSMGLVVVPALYAWFNIAASWDPYGNTKALKVAVANNDKGYKSDLIPVRVNVGETIISTLHANDQLDWQFVKSDKAIDGVKSGEYYAAIVIPKGFSADMMTLFSPDIKHAQLKYYLNEKINPIAPHITDQGATTVVNTIDKTFAKTIAQVGLDLASSILHYSQSPQMAEYMRNLNGNLTTMADTLSGASQQVTSYSQLLGSANDIVDSTGKLLASATKAGKQAQNALKQGKSGATSLTSAGANVTSSVNTALDQVSDAFDQVAAKVNKAFDALGKDSDTAASQLTTLSEQVSSSESLYDTYITSLNHMHESVEQLPDSDSAKQALLEAIDREITLLEAAKGDSQKLAQQLKDASTQVTQDTAAAERSRKEILNRITSAKQSISNVRDDYATNVKPKIDALASTVSTLISQTDSMITQLSGTADDLDDVTGDVGTNVTSIRSTLGAIAKKLDSSAATVKELITKLETGGNAGDGNSDGGDGDNDASSSDSGESDELRALATANASTLSTLISAPVALHRVSVYPIANYGSAMAPFYTILSIWVGAIILCAMLKVTISDREKAHVLGLGDTLPRVAGPSGPGNASRWGLRLDHEYFGRYAIFALLALLQGTLVCLGDMYFLGVQANHALQFLAVGWLAALVFSNIVYTLTVSFGDIGKAVAVVLLVMQVAGSGGTFPIETLPKFFQMLYPFLPFPHAIDAMHAAMAGSYGNEYLLDMVYLALFLIPSLLLGLVLRKPVIRLNNWVSRNLESTKVM
>NZ_AP012330.1|WP_004222926.1|73777_76561_-|YhgE/Pip-domain-containing-protein
MHQVFAIFLRDVKRILKNPVALVVTLGVAIIPSLYAWCNILANWDPYANTGNIQVAVANEDKGTTSTLVGHLDAGQQTVNQLKKNHQLGWHFVPKQQAIEGVESGKYYAAIVLPEDFSSRLIGTVTGKGDRPSITYYINEKLNAIAPKITDTGATTIDEQINTTFVSSVADAVAKEVKEAAGETTGSVKSAQSDVINDLTDTINQLETVQQQLRDTRSTLDKALTTIDSAKQSNIALASEITNSLDTVGKASDLLSETRTQTERFSNTLVGALDNGSTQLSGLQVNVSNATGTVLSGLNTTQDALDQVSSTMHRINTTTGTVLDGVEKALQASQLDPNSQTYKDLSAQLAEARKQLTFQQQRIDAFDQDTTAAINAGKNTANGFNDDVTTLAKNGTASMTSARTTITGTVMPNLNTGLDTLSLANGSLSGTLTTLQSTLEQGNGLLDQLSRTVTQTNTTIAGTQTQLANLAKQLNTTRTDVAALSSSAMFQQLSQALGLDASEVGSFVGEPVHLDEQVLYPVKNYGSAVTPFYTNLALWVGGFVLVAIYKLEVDRDEKIRMYTPRQGYMGRWLLFVTVGFLQAIIATIGDLALGIQCEHPFLFILAGIFASFVYVNIIYALAVAFRHIGKAVAVILVIIQIPGAAGLYPIEMMPEFFRRLKPFLPFTYGINAMRGPIGGMYANHYWIDMLSLFWYLPVALFIGLVVRKLALNLNRLFDNRLADTDLMITEHNEGTVEPLRLTETAQQIAEEFPELARRRAIHFFRLYPRLVRWGFLALAVLPFVFLLLLFITRMKLAMLLGWIISIIAIDTYLIVVEYLRERYANYLGKEAMSAEEFRSAILHENLLFRPGMHYKPMHAIHTRLYAAAHGGSAGHAAGHAAGHAAGHAAGHAAGHAAEHAAEYTAEYAAGNTDGNAGRSLREEGNEQ

Crispr_ID: NZ_AP012330_3

• CRISPR_ID: NZ_AP012330_3
• CRISPR_location: 62502-62627
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NZ_AP012330_3

Consensus_repeat	Method
TGTCCGATTCTCCAGAATCGGACA	CRISPRCasFinder

spacers of NZ_AP012330_3

>3.1|62526|27|NZ_AP012330|CRISPRCasFinder
ACCAGACGGGTGAAATGTACGCGAGGA
>3.2|62577|27|NZ_AP012330|CRISPRCasFinder
TCCAAAGGACTGAAATGCGTGCGTATG

CRISPR arrays and Neighbor proteins around NZ_AP012330_3

CRISPR arrays

The CRISPR arrays of NZ_AP012330_3

>merge|NZ_AP012330|3|62502-62627|CRISPRCasFinder
TGTCCGATTCTCCAGAATCGGACAACCAGACGGGTGAAATGTACGCGAGGATGTCCGATTCTCCAGAAACGGACATCCAAAGGACTGAAATGCGTGCGTATGTGTCCGATTCTCCAGAATCGGACA

>NZ_AP012330|3|3|62502-62627|CRISPRCasFinder
TGTCCGATTCTCCAGAATCGGACA	ACCAGACGGGTGAAATGTACGCGAGGA
TGTCCGATTCTCCAGAAACGGACA	TCCAAAGGACTGAAATGCGTGCGTATG
TGTCCGATTCTCCAGAATCGGACA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP012330.1|WP_004222909.1|66693_68148_+|FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|215457
NZ_AP012330.1|WP_004222922.1|70351_71308_+|aromatic-amino-acid-DMT-transporter-YddG	unknown	unknown	gnl|CDD|183277
NZ_AP012330.1|WP_004222887.1|54957_55941_+|EamA-family-transporter	unknown	unknown	gnl|CDD|273359
NZ_AP012330.1|WP_004222880.1|52818_53475_-|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|225107
NZ_AP012330.1|WP_004222873.1|47943_48651_-|DUF3662-and-FHA-domain-containing-protein	unknown	unknown	gnl|CDD|378850
NZ_AP012330.1|WP_033524159.1|48859_51262_+|S9-family-peptidase	unknown	unknown	gnl|CDD|366030
NZ_AP012330.1|WP_004222940.1|79457_81041_+|ClC-family-H(+)/Cl(-)-exchange-transporter	unknown	unknown	gnl|CDD|238504
NZ_AP012330.1|WP_004222890.1|56024_56246_-|hypothetical-protein	unknown	unknown	gnl|CDD|225462
NZ_AP012330.1|WP_004222902.1|63478_64489_-|asparaginase	unknown	unknown	gnl|CDD|199207
NZ_AP012330.1|WP_155114916.1|53482_53647_-|hypothetical-protein	unknown	unknown	unknown
NZ_AP012330.1|WP_004222903.1|64709_66209_-|amino-acid-permease	unknown	unknown	gnl|CDD|224038
NZ_AP012330.1|WP_004222926.1|73777_76561_-|YhgE/Pip-domain-containing-protein	unknown	unknown	gnl|CDD|224428
NZ_AP012330.1|WP_004222885.1|53779_54859_+|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|225176
NZ_AP012330.1|WP_033524171.1|56894_58199_-|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl|CDD|234642
NZ_AP012330.1|WP_004222911.1|68341_69442_+|zinc-metalloprotease-HtpX	unknown	unknown	gnl|CDD|235102
NZ_AP012330.1|WP_004222897.1|58536_60522_+|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl|CDD|273938
NZ_AP012330.1|WP_152595400.1|51551_52736_-|ATP-binding-protein	unknown	unknown	gnl|CDD|226951
NZ_AP012330.1|WP_004222924.1|71450_73775_-|YhgE/Pip-domain-containing-protein	unknown	unknown	gnl|CDD|224428
NZ_AP012330.1|WP_033524162.1|76869_77937_+|class-II-fructose-bisphosphate-aldolase	unknown	unknown	gnl|CDD|236406
NZ_AP012330.1|WP_004222937.1|78147_79434_+|adenylosuccinate-synthase	unknown	unknown	gnl|CDD|234904

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_AP012330.1|WP_004222909.1|66693_68148_+|FAD-dependent-oxidoreductase	gnl|CDD|215457	PLN02852, PLN02852, ferredoxin-NADP+ reductase.	1.21497e-105
NZ_AP012330.1|WP_004222922.1|70351_71308_+|aromatic-amino-acid-DMT-transporter-YddG	gnl|CDD|183277	PRK11689, PRK11689, aromatic amino acid efflux DMT transporter YddG.	3.45572e-128
NZ_AP012330.1|WP_004222887.1|54957_55941_+|EamA-family-transporter	gnl|CDD|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	5.69184e-24
NZ_AP012330.1|WP_004222880.1|52818_53475_-|response-regulator-transcription-factor	gnl|CDD|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	9.43944e-33
NZ_AP012330.1|WP_004222873.1|47943_48651_-|DUF3662-and-FHA-domain-containing-protein	gnl|CDD|378850	pfam12401, DUF3662, Protein of unknown function (DUF2662). This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with pfam00498.	6.93655e-42
NZ_AP012330.1|WP_033524159.1|48859_51262_+|S9-family-peptidase	gnl|CDD|366030	pfam00326, Peptidase_S9, Prolyl oligopeptidase family.	1.36351e-42
NZ_AP012330.1|WP_004222940.1|79457_81041_+|ClC-family-H(+)/Cl(-)-exchange-transporter	gnl|CDD|238504	cd01031, EriC, ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.	4.1445e-154
NZ_AP012330.1|WP_004222890.1|56024_56246_-|hypothetical-protein	gnl|CDD|225462	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only].	1.69487e-12
NZ_AP012330.1|WP_004222902.1|63478_64489_-|asparaginase	gnl|CDD|199207	cd08963, L-asparaginase_I, Type I (cytosolic) bacterial L-asparaginase. Asparaginases (amidohydrolases, E.C. 3.5.1.1) are enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases. This model represents type I L-asparaginases, which are highly specific for asparagine and localized in the cytosol. Type I L-asparaginase acts as a dimer. A conserved threonine residue is thought to supply the nucleophile hydroxy-group that attacks the amide bond. Many bacterial L-asparaginases have both L-asparagine and L-glutamine hydrolysis activities, to a different degree, and some of them are annotated as asparaginase/glutaminase. One example of an enzyme with no L-glutaminase activity is the type I L-asparaginase from Wolinella succinogenes.	3.37728e-117
NZ_AP012330.1|WP_004222903.1|64709_66209_-|amino-acid-permease	gnl|CDD|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	1.27569e-172
NZ_AP012330.1|WP_004222926.1|73777_76561_-|YhgE/Pip-domain-containing-protein	gnl|CDD|224428	COG1511, COG1511, Predicted membrane protein [Function unknown].	1.59232e-101
NZ_AP012330.1|WP_004222885.1|53779_54859_+|alpha/beta-hydrolase	gnl|CDD|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	2.11816e-38
NZ_AP012330.1|WP_033524171.1|56894_58199_-|tRNA-guanosine(34)-transglycosylase-Tgt	gnl|CDD|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	2.26264e-165
NZ_AP012330.1|WP_004222911.1|68341_69442_+|zinc-metalloprotease-HtpX	gnl|CDD|235102	PRK03072, PRK03072, heat shock protein HtpX; Provisional.	1.65559e-177
NZ_AP012330.1|WP_004222897.1|58536_60522_+|trypsin-like-peptidase-domain-containing-protein	gnl|CDD|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	1.15215e-92
NZ_AP012330.1|WP_152595400.1|51551_52736_-|ATP-binding-protein	gnl|CDD|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	2.05694e-10
NZ_AP012330.1|WP_004222924.1|71450_73775_-|YhgE/Pip-domain-containing-protein	gnl|CDD|224428	COG1511, COG1511, Predicted membrane protein [Function unknown].	2.21029e-93
NZ_AP012330.1|WP_033524162.1|76869_77937_+|class-II-fructose-bisphosphate-aldolase	gnl|CDD|236406	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional.	0
NZ_AP012330.1|WP_004222937.1|78147_79434_+|adenylosuccinate-synthase	gnl|CDD|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0

Protein sequences

>NZ_AP012330.1|WP_004222897.1|58536_60522_+|trypsin-like-peptidase-domain-containing-protein
MAEENDQNAVQPQNDEQQTVPMPPVDAEQTQTYAGEPYAAESATEPIDVQGGIEDQPTAAMPVANDGASAESAAAAGDTPDYASAADERTVVGGSTQDAPAQQYRPAPEYGAYGPVPTQPADGTAAANDTANGAPNIPPQPQYGAYGQAPQQPQRPRNPFFGNPYVGGNQQNDQQNAQSNNGNPFMKPAAQGGANVPPAAPNTPNNGNPFGNPNNGNPFGAPQQNGAATKPKSASGVTGHVMTGVVAALVSAALCLGVGYAAITNGWVTVPTSSSLTSVKSNTSGSGSAKAKSGEAADWSAVAKEVSDSVVSIDVATSDGSAKGSGAIISDKGYIVTNNHVISGAKQIQVTLANGTIYSAQIVGTDTTTDLAVIKLDNPPSNLKAAEFADSDNLAVGESVMAIGNPLGYDDTATVGIVSALNRPVTVSDDNNNDIVTNAVQIDAAVNPGNSGGPTFNAAGQVIGINSSIASTTTSSGTAGSIGIGFAIPSNLVKRVANEIIDNGTVQHVALGVTIKSSTVEADGVTRGCTQVQSVVDNSPAAKAGVKAGDSIVAFNGKAVNNNYSLLGYVRASAMNDKVTLTVVRDGNTMELDVTLDQEESQTNSANSQNQRNNGNDGQSQNGNGNGYGNDGNGNGNGQSDGNGSNGYGDGGGLFDPFGLW
>NZ_AP012330.1|WP_033524171.1|56894_58199_-|tRNA-guanosine(34)-transglycosylase-Tgt
MSENLIEHPRGAEPGKPGRRDAFYFEQKTRLPDAADGKGRGGARYGRTGIIHTPHGDIHTPAFVPVATQAAMKAVLPETMKDLGAQCLLSNAFHLYERPGEQVLDEAGGLAKFMNWNGPTFTDSGGFQVLSLGAGFKKTLAMDVTGMKSDDVIAEGKERLAFVDEDGVTFKSPLNGSLHRFSAEISMGIQHKIGADIMFAFDELTTLMNTRGYQERSVERTYRWAQRCVAEHKRLTEERVGKPYQALYGVVQGANYEDLRRHAAEQIASLDFDGVGIGGAIEKRIIGDTCAWICDAMPESRPRHVLGIAAVDDIFACVENGGDTFDCVAPARCGRNGAIFTRGGRYNIKRAQFKHDFGPLEEGCDCYTCTHYSRAYVDHALRAREFNGFTLATIHNEHFFVKLLDDIRASIDGGYFNEFRDETLTRFYANGSRG
>NZ_AP012330.1|WP_004222890.1|56024_56246_-|hypothetical-protein
MPNPFHLSLVVSADCTEYGLAGEEFTVNAAGQSYISYADYAIAVVDEAEQAAHVGEPSPCTPSSTSFSCAVHV
>NZ_AP012330.1|WP_004222887.1|54957_55941_+|EamA-family-transporter
MAKQTSGQTSQSQKTSESQKTAKKTAKKTEHMLEQTPKSLLIGTGMTLLGGAMWGMNSTVAKLLMRDYQLDPIWLSCVRALFASLIFLVGSAITTPQKLAGAVKDVKSYPKYLVTTLICVLLVQVSYLMTIDWTNSGTATVLQTLNLIFVLAWVCLRGKRLPLKRELVGVLLAFAGTFLIATGGNFASLSLPWQGLAWGLVDAVSTAAMSILPVMLMLKWGNMTINGITFLMSGLILCPFAQPWANIPALDARGMLLLLYTIVCGTFLAFWLYMAGVMRVGAVRATMLGTSEPVMATVTAVAWAGEAFTFTDLTGFAMIIIMVFLVR
>NZ_AP012330.1|WP_004222885.1|53779_54859_+|alpha/beta-hydrolase
MEFMTITLIDEARYDAEMDETVLPALRNCMTEGWMEPATVDWDDNMLPKLEHPGRLHYYCYDAHKFDALREDGASGVFRGAVVISHGFTEFGRKYSEMVWYFLLAGYSVCVFEHRGHGHSTHDMSNPSLVWIDDWRRYVADFATFAQTVGRETAGDGPMYLYCHSMGGGIGAAVLERYPSLFDKAVLSAPMIAPVVGMPTWIARIVVGVICGLGFGKSRVFGHADFDGNLNLDDYHGASEARIRWFHKQRLADKSCQTNAATFDWANQAMALSRAVLKPDMCGAIESPVLLFQAGRDVWVLNGPQDDFVERVSEGGGFIEKVRYSQSLHEIFSMPNAVFGPYLDKILDFLAASNASLAE
>NZ_AP012330.1|WP_155114916.1|53482_53647_-|hypothetical-protein
MKFVSLLMVVTLSLTGTPTYAHAAATPVDNNGDISAAKDSNCPTWLQWLCGKGK
>NZ_AP012330.1|WP_004222880.1|52818_53475_-|response-regulator-transcription-factor
MTTSEKHPKIHRIALVDNDPRALDSLSAVIASKVPTAYVVWTATSGGEAIERCQDANGHVSLLILDMSMEGLQGPATCHRLRLMGQRMPILGATSFSINSYRDKLVEAGAQGLVGKENADQLAQIIMRMCNGEVMEGFEPPALANLRISREADTTPALTVREEQIISLCAEGMLDRDIAEHLGISEATIRKHMQSILRKLNCKTSRQAVALWVRSNAL
>NZ_AP012330.1|WP_152595400.1|51551_52736_-|ATP-binding-protein
MLIVLAWTIYGVCYEPPTDIFGVIWVAMLVTALVPSPLFLKSTSVAILVIASIGDLFTPYAHLGNSLPAQLYAYGMLAYSTNAIIVATLLTYYVVNILLIDPPGPNTNPVAMVSMYAMVLLLGRALSWSEKTTQKSFEAAQNKNRLQELESRARIADAIHDAVTGDLSAATFVAQRHIGGNSSSPGVAADPANATTTTATATADAEDWRQINEYILSALTNVHRVIDELNMDATTLPGDADGEALANLLRATLDDGDRRLRKLGFNITSIRHCAGGKPSASQAIAELANNLLREIYANIARHAAPGSKVDLSVMLRPNAIEITQINPMKEDMAGADERDDELPGGHGLASFKKQLESYQGTLTTSAQDGSWTLFAYIPVTVIDDSPGLLEQVQV
>NZ_AP012330.1|WP_033524159.1|48859_51262_+|S9-family-peptidase
MTDAIRQFPRKKARTLRFSCGAPRSARVIADGSRALFLRSDGPEDTVTSLWMSVIDEDGNIGEIPLADPRVLLADADAEDVPAEEKARRERAREGGSGIVSYCVDGAGNRVTFTINGQLFLTDLTAGATRAITIEEDELKPVLNPRISPDGRHIMYTTGTYLVDVDLANDEETGDAISVVASAPQNGEWKIGLAEFAAGEEMDRYDGFWWSPDSKYVLFETYDESPEPIWHLSDPANPTNPAQANRYPQALTANADVRLTLLELGYDSDNCCYGAIANEVQWDHESYEYLAAVSWSEGHDPIILVQDRLQQHDQVLAIHVGEPIATMRDAENGFTDDNGDEVETFSIAIPEYAEGERPGTTRVLEEHGNDYWLDLIHGTPAFTPDGRLICAMNDMDVDTNRLTVDGTPFTPAGLQVREVLDVTDDDVLCVVQRTPEILPESDLPFLWQSNASDHDARSFDVVSIRYDGTWEPLTYAPGQWSMSRAGNGCVVTGRGMDDATVQMQHCMNIATTDENGTDVASMVVAPIENHAETPGFTPNVHFTRLGERELYTAIVLPSSDSEYAHEAILPVLMKPYGGPGFQQVIESQSFYWDAQWWADQGYIVVTTDGRGTTGRGPQWDRAIYETMKSVTLEDQIDAVRALPEALEALAGENAAANVPQPDLSRVAMIGWSYGGFLSALAVLEAPETFAAACAGAPPTDWTLYDTHYTERYLGLDSAVYERNSIIADAPQLDRPLMLIHGFADDNVTIAHSLRLSQALMATGRKHTFLPLTGITHMTNDETVAENLLILQRDFLAEALG
>NZ_AP012330.1|WP_004222873.1|47943_48651_-|DUF3662-and-FHA-domain-containing-protein
MSVLDRFEKSVEGAVNGVFAKFGSKDLQPVDLSSALEREIDKEAMPVTRDRTVAPNEYRFKLSTPDFNNIVEWGAEALANELADNLTQYAKDQHYAFVGPVVVIFEEDLDLTKSNFKLTSESVQGNTVPVTTDAQTEDCPMLEIGEHQYLLTESKTIIGRGSDCDIVIDDPGISRRHMQIDITDNGNTVIARDLGSTNGMYVEGHHVEAATLLDGNTITIGRTRILYWASSQDQE
>NZ_AP012330.1|WP_004222902.1|63478_64489_-|asparaginase
MRIHITYTGGTIGMIDSPNGLIPGADTRGWLFRLLEDAHMDASLFTFTELDPLIDSSNATPDNWQTMVDDLRAHHDDADAFVVLHGTDTMSYSSAALSYALADFGKPVIFTGSQHPLGKIESDATANVTGALNAAMSGRFHGVGLFFGHHLFAGNRVSKSSSWAFEGFSAPSVGPLARTGTPWHWYAGDAASAGYGWTSPQPYSRHDVAVIDMAPGISAARLEAMLTPRPEAVLLRAYGVGNVPSDEPGLTDVIADVLHDGVPVVIASQCQQAEVLLGHYETGDAIARAGAIGSGDMTLEATYAKIMFLLSQGVTRVDFGKWMRVSIAGEISPSSL
>NZ_AP012330.1|WP_004222903.1|64709_66209_-|amino-acid-permease
MSNSNTSSNATQQSSAQKQDKSDAGYAKDLKPRHIQMIAIGGSIGTGLFLGAGGRLVQGGAGLAIAYAVCGIFAFLMVRALGELAIRRPSSGAFVSYAREFLGEKGAYVTGWLFFLDWSVTVMADITAVAVYFHYWKAFQGVPQWLIALCALALVFVLNLLSVKMFGEAEFWFAAIKVATIISFMVIAIWAIVTGAPVGDAHAGVANITDNGGLFPNGIAPVFALTLGVVFAFGGTEMVGVAAGEAKDAEKVLPKAINSMIIRIFVFYVGSVVLMALVLPYTAYSSNESPFVTFFSGIGIPHAGDVIQVVVLTAALSSLNAGLYSTGRTLRSLAVAGSGPRFAARMNKHHVPYGGIIITSALGLIGVVMNAVLPADAFEIVMNLAGIGIAGTWAAILVTHLAFLKKVKTGEEIRPDYHMPGAPYTNYISLIFFAVVVLSNLTSAAGRWTLAMFVVVVIAMVAGWFYMRGRINGDLMDEMLDNNGNDVPDVLETTEVPGK
>NZ_AP012330.1|WP_004222909.1|66693_68148_+|FAD-dependent-oxidoreductase
MTETNELRIAVIGAGPAGVYSSDIFLRQLKKLGEELGLGTAARIDLFEKLPVPFGLVRYGVAPDHPSIKFIASALEKTLDNPDIHLYCDVEFGKDVTLDELLERYDAVLFATGAVEDKPLGLPGADLDGVYGAAKFVEWYDGYPTGAREWPLEAEEVAVIGGGNVAMDVARELMRNADDLKERTDIPDNVYEGIKANKARVLHLFIRRGVAQAKFSVQELREMEKLPGVQLIINEDDFDLDEDTIEEAGKDKLTRQMVEELFTIREMAEDMEDDGDVDYEGNTADRKYYVHFNSAPVEVLGEDGKVVGIRVEKTETSADGKMSRTGEFEEYPVQAVYHAIGYKPATAPGIAYDERHAHLANANGDGRITTTASAEDGAQVRERLYATGWAKRGPVGLIGSTKSDALLIVTNMLEDLSKAAEGGRVAADRDPESIDRLLASRGVKPIDFAGWKKVDAYERADGAKEGREHKKVIDPEQMRALAHA
>NZ_AP012330.1|WP_004222911.1|68341_69442_+|zinc-metalloprotease-HtpX
MNGKLQVHGHCNGLKTTLLFALMWGVIMLIWWATGGSQRTLGIYILIGLGSTFASYWFSDKLAIASMRAQEVSEQEAPVLYKIVRELSAKAGKPMPRIYIAPTMSPNAFATGRNERHAAVCCTQGILQMLNEREIRGVLGHELMHVYNHDILTSAIASAMATVISYLGYSLMYFGGGNSRDDRNDSSSNGLGLLGVLLSTILAPIAASLIQMAISRTREYDADEDGSMLTEDPEALASALNKISNGAETMPMQKTAGTQSVAAMMIANPFSAEGFSKLFSTHPPTSDRIARLMQMGQEMRQQGVQSGYLAGGYATSGVAAADIRQGGRSAMAGAGGPQFGTQYGPGHDSGGSAGRYSRDYSQRPRG
>NZ_AP012330.1|WP_004222922.1|70351_71308_+|aromatic-amino-acid-DMT-transporter-YddG
MNTDQKLPAESAGERPSNPLFGHAISHAATLIGLFAIVLWGFMAGLVRLVSESFGATLGSALIYTVGGMLLLIVRRPKPISQAPRKYLVAGGLMFIAYEASISLSIGLATTNAQSVEVSLVNYLWPTLLVLMTAAVSHKRGSVSEALPGAIVATVGVAMAVGGENLDVQEAVANIASNPLPYALAFAGAFIWAIYATVTPSMSDGYDGTTIFFCCVAVVLWIIHFVSGDGLPAVAPGIGGYISLLACAASIAGGYACWGYGMLHGSMETLAIGSYATPLFSTASSTLLLGVTLGMPFWIGVALVVVGSLINVWFARRR
>NZ_AP012330.1|WP_004222924.1|71450_73775_-|YhgE/Pip-domain-containing-protein
MIWGIFKRDMCHATRNVIAVIVSMGLVVVPALYAWFNIAASWDPYGNTKALKVAVANNDKGYKSDLIPVRVNVGETIISTLHANDQLDWQFVKSDKAIDGVKSGEYYAAIVIPKGFSADMMTLFSPDIKHAQLKYYLNEKINPIAPHITDQGATTVVNTIDKTFAKTIAQVGLDLASSILHYSQSPQMAEYMRNLNGNLTTMADTLSGASQQVTSYSQLLGSANDIVDSTGKLLASATKAGKQAQNALKQGKSGATSLTSAGANVTSSVNTALDQVSDAFDQVAAKVNKAFDALGKDSDTAASQLTTLSEQVSSSESLYDTYITSLNHMHESVEQLPDSDSAKQALLEAIDREITLLEAAKGDSQKLAQQLKDASTQVTQDTAAAERSRKEILNRITSAKQSISNVRDDYATNVKPKIDALASTVSTLISQTDSMITQLSGTADDLDDVTGDVGTNVTSIRSTLGAIAKKLDSSAATVKELITKLETGGNAGDGNSDGGDGDNDASSSDSGESDELRALATANASTLSTLISAPVALHRVSVYPIANYGSAMAPFYTILSIWVGAIILCAMLKVTISDREKAHVLGLGDTLPRVAGPSGPGNASRWGLRLDHEYFGRYAIFALLALLQGTLVCLGDMYFLGVQANHALQFLAVGWLAALVFSNIVYTLTVSFGDIGKAVAVVLLVMQVAGSGGTFPIETLPKFFQMLYPFLPFPHAIDAMHAAMAGSYGNEYLLDMVYLALFLIPSLLLGLVLRKPVIRLNNWVSRNLESTKVM
>NZ_AP012330.1|WP_004222926.1|73777_76561_-|YhgE/Pip-domain-containing-protein
MHQVFAIFLRDVKRILKNPVALVVTLGVAIIPSLYAWCNILANWDPYANTGNIQVAVANEDKGTTSTLVGHLDAGQQTVNQLKKNHQLGWHFVPKQQAIEGVESGKYYAAIVLPEDFSSRLIGTVTGKGDRPSITYYINEKLNAIAPKITDTGATTIDEQINTTFVSSVADAVAKEVKEAAGETTGSVKSAQSDVINDLTDTINQLETVQQQLRDTRSTLDKALTTIDSAKQSNIALASEITNSLDTVGKASDLLSETRTQTERFSNTLVGALDNGSTQLSGLQVNVSNATGTVLSGLNTTQDALDQVSSTMHRINTTTGTVLDGVEKALQASQLDPNSQTYKDLSAQLAEARKQLTFQQQRIDAFDQDTTAAINAGKNTANGFNDDVTTLAKNGTASMTSARTTITGTVMPNLNTGLDTLSLANGSLSGTLTTLQSTLEQGNGLLDQLSRTVTQTNTTIAGTQTQLANLAKQLNTTRTDVAALSSSAMFQQLSQALGLDASEVGSFVGEPVHLDEQVLYPVKNYGSAVTPFYTNLALWVGGFVLVAIYKLEVDRDEKIRMYTPRQGYMGRWLLFVTVGFLQAIIATIGDLALGIQCEHPFLFILAGIFASFVYVNIIYALAVAFRHIGKAVAVILVIIQIPGAAGLYPIEMMPEFFRRLKPFLPFTYGINAMRGPIGGMYANHYWIDMLSLFWYLPVALFIGLVVRKLALNLNRLFDNRLADTDLMITEHNEGTVEPLRLTETAQQIAEEFPELARRRAIHFFRLYPRLVRWGFLALAVLPFVFLLLLFITRMKLAMLLGWIISIIAIDTYLIVVEYLRERYANYLGKEAMSAEEFRSAILHENLLFRPGMHYKPMHAIHTRLYAAAHGGSAGHAAGHAAGHAAGHAAGHAAGHAAEHAAEYTAEYAAGNTDGNAGRSLREEGNEQ
>NZ_AP012330.1|WP_033524162.1|76869_77937_+|class-II-fructose-bisphosphate-aldolase
MTIATPERYAQMLDAARRGGYAYPAINVTSTQTLNAALQGFAEAESDGIIQVSVGGAAYFSGQRVNDRVTGSLAFAAFAHEVAAKYPNITIALHTDHCAKQYLDEWVRPLLDHEVEQVKHGQEPTFQSHMWDGSTVPLGENLDIAEELLDKSQAAHTVLEIEIGAVGGEEDGHSAEINDKLYSTPAQGIAVAQRLGLGERGRYMAAFTFGNVHGAYKPGVVKLRPELLDEIQTTVALAIKAGEMPDPAHSLDVASGKPFALVFHGGSGSAPEEIAQAVSYGVVKMNIDTDTQYAFSRAVAGHMFSNYDSVLKIDGEVGNKKMYDPRSWGREAESAMAARVVEACRQLGSAGKALK
>NZ_AP012330.1|WP_004222937.1|78147_79434_+|adenylosuccinate-synthase
MPGIVLIGAQWGDEGKGKATDLIGTKVDYVARFNGGNNAGHTVVVGDESYALHLLPSGIISPNVTPVIGNGVVVDPEVLFEEIDGLESRGVDCSRLLVSEAAHVIAPYHRTLDKVTERFLGKHKIGTTGRGIGPAYADKINRVGIRVHDLFNAEHLHDKVEASLHQKNQMLVKLYNRRPIDVDETTDELLKLGERLKPYVANTSLVLNKALDEGKTVLFEGGQATMLDVDHGTYPFVTSSNPTAGGACTGTGVGPTKITRVIGVSKAYVTRVGEGPFPTELFGEDGEWLRAQGHEYGVTTGRPRRCGWFDAVVNRYAAQVNGLTDIVLTKLDVLTGLKEIPLCVAYDVNGERRDDMPTDQSEFAAAKPIYESMPGWDEDISQIHDFNDLPKTCQDYVKRLEELSGCRISVIGTGPQRDHIIQINSLVD
>NZ_AP012330.1|WP_004222940.1|79457_81041_+|ClC-family-H(+)/Cl(-)-exchange-transporter
MTGNDAAHDIRRLIPRFDHLKWKMAAAGIVVGLVSGLLVVVYRLGIEYGTDASRWIYARIRETPWLIAPWAVAAVAAALAIAWMVGKEPMAGGSGIPQTNGVVICGLKMRWQTILPVRFVGGLLGALFGLSLGREGPSIQIGASGAQCVSHRLRGRRREDMQEHYLVTAGAAAGLSAAFSAPLSGMMFALEGVHRSFSPAILMGATAASLTADFVSKYCFGLRPVLDFGDIGQLSLEEYVWLIPLGLVAGLVGSLMNRSLLGFQTLYGKLPARSRPMIAIAIALPVGIWLPDVLGGGSNLIDTAEHARVGLGMLCLLFVAKTLFTSTSFGSGAPGGIFMPILAVGSLAGGICGEVLHRFGDLPSDAVAVFAVCVMTGTLAASVKTPITSILLAVEMSGTLTHMLPVAAVAFIALLVSDLLRTKPIYGELLERYVRAQGMQMAIASHVGSGIMELPLEMGAIADGKRVRDVRWPSGCLIIGLRRGESEIVPRGDTRLRAGDYLVVLFSGEEEREVRPAMRRLCDARLD

Crispr_ID: NZ_AP012330_4

• CRISPR_ID: NZ_AP012330_4
• CRISPR_location: 70196-70320
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NZ_AP012330_4

Consensus_repeat	Method
GTCCGATTCTGGTGAATCGGACG	CRISPRCasFinder

spacers of NZ_AP012330_4

>4.1|70219|28|NZ_AP012330|CRISPRCasFinder
TGAGGGATACGAATCCGAATGTTTGTGC
>4.2|70270|28|NZ_AP012330|CRISPRCasFinder
CACAAGGTGCCAAAACCGGTGTTCAATT

CRISPR arrays and Neighbor proteins around NZ_AP012330_4

CRISPR arrays

The CRISPR arrays of NZ_AP012330_4

>merge|NZ_AP012330|4|70196-70320|CRISPRCasFinder
GTCCGATTCTGGTGAATCGGACGTGAGGGATACGAATCCGAATGTTTGTGCGTCCGTTTCTGGTGAATCGGACGCACAAGGTGCCAAAACCGGTGTTCAATTGTCCGTTTCTGCAGGATCGGACA

>NZ_AP012330|4|4|70196-70320|CRISPRCasFinder
GTCCGATTCTGGTGAATCGGACG	TGAGGGATACGAATCCGAATGTTTGTGC
GTCCGTTTCTGGTGAATCGGACG	CACAAGGTGCCAAAACCGGTGTTCAATT
GTCCGTTTCTGCAGGATCGGACA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP012330.1|WP_004222903.1|64709_66209_-|amino-acid-permease	unknown	unknown	gnl|CDD|224038
NZ_AP012330.1|WP_004222945.1|82321_82717_+|CrcB-family-protein	unknown	unknown	gnl|CDD|376809
NZ_AP012330.1|WP_004222887.1|54957_55941_+|EamA-family-transporter	unknown	unknown	gnl|CDD|273359
NZ_AP012330.1|WP_004222897.1|58536_60522_+|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl|CDD|273938
NZ_AP012330.1|WP_033524163.1|81227_82322_+|CrcB-family-protein	unknown	unknown	gnl|CDD|223317
NZ_AP012330.1|WP_004222940.1|79457_81041_+|ClC-family-H(+)/Cl(-)-exchange-transporter	unknown	unknown	gnl|CDD|238504
NZ_AP012330.1|WP_004222890.1|56024_56246_-|hypothetical-protein	unknown	unknown	gnl|CDD|225462
NZ_AP012330.1|WP_004222922.1|70351_71308_+|aromatic-amino-acid-DMT-transporter-YddG	unknown	unknown	gnl|CDD|183277
NZ_AP012330.1|WP_004222909.1|66693_68148_+|FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|215457
NZ_AP012330.1|WP_004222926.1|73777_76561_-|YhgE/Pip-domain-containing-protein	unknown	unknown	gnl|CDD|224428
NZ_AP012330.1|WP_004222902.1|63478_64489_-|asparaginase	unknown	unknown	gnl|CDD|199207
NZ_AP012330.1|WP_004222885.1|53779_54859_+|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|225176
NZ_AP012330.1|WP_033524171.1|56894_58199_-|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl|CDD|234642
NZ_AP012330.1|WP_004222911.1|68341_69442_+|zinc-metalloprotease-HtpX	unknown	unknown	gnl|CDD|235102
NZ_AP012330.1|WP_004222949.1|83361_84447_+|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl|CDD|380514
NZ_AP012330.1|WP_004222899.1|60901_63436_+|HAD-IC-family-P-type-ATPase	unknown	unknown	gnl|CDD|319844
NZ_AP012330.1|WP_033524162.1|76869_77937_+|class-II-fructose-bisphosphate-aldolase	unknown	unknown	gnl|CDD|236406
NZ_AP012330.1|WP_004222924.1|71450_73775_-|YhgE/Pip-domain-containing-protein	unknown	unknown	gnl|CDD|224428
NZ_AP012330.1|WP_004222937.1|78147_79434_+|adenylosuccinate-synthase	unknown	unknown	gnl|CDD|234904
NZ_AP012330.1|WP_004222953.1|84710_86225_+|sucrose-phosphorylase	unknown	unknown	gnl|CDD|237528

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_AP012330.1|WP_004222903.1|64709_66209_-|amino-acid-permease	gnl|CDD|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	1.27569e-172
NZ_AP012330.1|WP_004222945.1|82321_82717_+|CrcB-family-protein	gnl|CDD|376809	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB). CRCB is a family of bacterial integral membrane proteins with four TMs.. Over expression in E. coli also leads to camphor resistance.	3.93257e-21
NZ_AP012330.1|WP_004222887.1|54957_55941_+|EamA-family-transporter	gnl|CDD|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	5.69184e-24
NZ_AP012330.1|WP_004222897.1|58536_60522_+|trypsin-like-peptidase-domain-containing-protein	gnl|CDD|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	1.15215e-92
NZ_AP012330.1|WP_033524163.1|81227_82322_+|CrcB-family-protein	gnl|CDD|223317	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning].	1.53103e-23
NZ_AP012330.1|WP_004222940.1|79457_81041_+|ClC-family-H(+)/Cl(-)-exchange-transporter	gnl|CDD|238504	cd01031, EriC, ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.	4.1445e-154
NZ_AP012330.1|WP_004222890.1|56024_56246_-|hypothetical-protein	gnl|CDD|225462	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only].	1.69487e-12
NZ_AP012330.1|WP_004222922.1|70351_71308_+|aromatic-amino-acid-DMT-transporter-YddG	gnl|CDD|183277	PRK11689, PRK11689, aromatic amino acid efflux DMT transporter YddG.	3.45572e-128
NZ_AP012330.1|WP_004222909.1|66693_68148_+|FAD-dependent-oxidoreductase	gnl|CDD|215457	PLN02852, PLN02852, ferredoxin-NADP+ reductase.	1.21497e-105
NZ_AP012330.1|WP_004222926.1|73777_76561_-|YhgE/Pip-domain-containing-protein	gnl|CDD|224428	COG1511, COG1511, Predicted membrane protein [Function unknown].	1.59232e-101
NZ_AP012330.1|WP_004222902.1|63478_64489_-|asparaginase	gnl|CDD|199207	cd08963, L-asparaginase_I, Type I (cytosolic) bacterial L-asparaginase. Asparaginases (amidohydrolases, E.C. 3.5.1.1) are enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases. This model represents type I L-asparaginases, which are highly specific for asparagine and localized in the cytosol. Type I L-asparaginase acts as a dimer. A conserved threonine residue is thought to supply the nucleophile hydroxy-group that attacks the amide bond. Many bacterial L-asparaginases have both L-asparagine and L-glutamine hydrolysis activities, to a different degree, and some of them are annotated as asparaginase/glutaminase. One example of an enzyme with no L-glutaminase activity is the type I L-asparaginase from Wolinella succinogenes.	3.37728e-117
NZ_AP012330.1|WP_004222885.1|53779_54859_+|alpha/beta-hydrolase	gnl|CDD|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	2.11816e-38
NZ_AP012330.1|WP_033524171.1|56894_58199_-|tRNA-guanosine(34)-transglycosylase-Tgt	gnl|CDD|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	2.26264e-165
NZ_AP012330.1|WP_004222911.1|68341_69442_+|zinc-metalloprotease-HtpX	gnl|CDD|235102	PRK03072, PRK03072, heat shock protein HtpX; Provisional.	1.65559e-177
NZ_AP012330.1|WP_004222949.1|83361_84447_+|LacI-family-DNA-binding-transcriptional-regulator	gnl|CDD|380514	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	3.68281e-81
NZ_AP012330.1|WP_004222899.1|60901_63436_+|HAD-IC-family-P-type-ATPase	gnl|CDD|319844	cd07544, P-type_ATPase_HM, P-type heavy metal-transporting ATPase; uncharacterized subfamily. Uncharacterized subfamily of the heavy metal-transporting ATPases (Type IB ATPases) which transport heavy metal ions (Cu(+), Cu(2+), Zn(2+), Cd(2+), Co(2+), etc.) across biological membranes. The characteristic N-terminal heavy metal associated (HMA) domain of this group is essential for the binding of metal ions. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	1.11235e-131
NZ_AP012330.1|WP_033524162.1|76869_77937_+|class-II-fructose-bisphosphate-aldolase	gnl|CDD|236406	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional.	0
NZ_AP012330.1|WP_004222924.1|71450_73775_-|YhgE/Pip-domain-containing-protein	gnl|CDD|224428	COG1511, COG1511, Predicted membrane protein [Function unknown].	2.21029e-93
NZ_AP012330.1|WP_004222937.1|78147_79434_+|adenylosuccinate-synthase	gnl|CDD|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
NZ_AP012330.1|WP_004222953.1|84710_86225_+|sucrose-phosphorylase	gnl|CDD|237528	PRK13840, PRK13840, sucrose phosphorylase; Provisional.	0

Protein sequences

>NZ_AP012330.1|WP_004222911.1|68341_69442_+|zinc-metalloprotease-HtpX
MNGKLQVHGHCNGLKTTLLFALMWGVIMLIWWATGGSQRTLGIYILIGLGSTFASYWFSDKLAIASMRAQEVSEQEAPVLYKIVRELSAKAGKPMPRIYIAPTMSPNAFATGRNERHAAVCCTQGILQMLNEREIRGVLGHELMHVYNHDILTSAIASAMATVISYLGYSLMYFGGGNSRDDRNDSSSNGLGLLGVLLSTILAPIAASLIQMAISRTREYDADEDGSMLTEDPEALASALNKISNGAETMPMQKTAGTQSVAAMMIANPFSAEGFSKLFSTHPPTSDRIARLMQMGQEMRQQGVQSGYLAGGYATSGVAAADIRQGGRSAMAGAGGPQFGTQYGPGHDSGGSAGRYSRDYSQRPRG
>NZ_AP012330.1|WP_004222909.1|66693_68148_+|FAD-dependent-oxidoreductase
MTETNELRIAVIGAGPAGVYSSDIFLRQLKKLGEELGLGTAARIDLFEKLPVPFGLVRYGVAPDHPSIKFIASALEKTLDNPDIHLYCDVEFGKDVTLDELLERYDAVLFATGAVEDKPLGLPGADLDGVYGAAKFVEWYDGYPTGAREWPLEAEEVAVIGGGNVAMDVARELMRNADDLKERTDIPDNVYEGIKANKARVLHLFIRRGVAQAKFSVQELREMEKLPGVQLIINEDDFDLDEDTIEEAGKDKLTRQMVEELFTIREMAEDMEDDGDVDYEGNTADRKYYVHFNSAPVEVLGEDGKVVGIRVEKTETSADGKMSRTGEFEEYPVQAVYHAIGYKPATAPGIAYDERHAHLANANGDGRITTTASAEDGAQVRERLYATGWAKRGPVGLIGSTKSDALLIVTNMLEDLSKAAEGGRVAADRDPESIDRLLASRGVKPIDFAGWKKVDAYERADGAKEGREHKKVIDPEQMRALAHA
>NZ_AP012330.1|WP_004222903.1|64709_66209_-|amino-acid-permease
MSNSNTSSNATQQSSAQKQDKSDAGYAKDLKPRHIQMIAIGGSIGTGLFLGAGGRLVQGGAGLAIAYAVCGIFAFLMVRALGELAIRRPSSGAFVSYAREFLGEKGAYVTGWLFFLDWSVTVMADITAVAVYFHYWKAFQGVPQWLIALCALALVFVLNLLSVKMFGEAEFWFAAIKVATIISFMVIAIWAIVTGAPVGDAHAGVANITDNGGLFPNGIAPVFALTLGVVFAFGGTEMVGVAAGEAKDAEKVLPKAINSMIIRIFVFYVGSVVLMALVLPYTAYSSNESPFVTFFSGIGIPHAGDVIQVVVLTAALSSLNAGLYSTGRTLRSLAVAGSGPRFAARMNKHHVPYGGIIITSALGLIGVVMNAVLPADAFEIVMNLAGIGIAGTWAAILVTHLAFLKKVKTGEEIRPDYHMPGAPYTNYISLIFFAVVVLSNLTSAAGRWTLAMFVVVVIAMVAGWFYMRGRINGDLMDEMLDNNGNDVPDVLETTEVPGK
>NZ_AP012330.1|WP_004222902.1|63478_64489_-|asparaginase
MRIHITYTGGTIGMIDSPNGLIPGADTRGWLFRLLEDAHMDASLFTFTELDPLIDSSNATPDNWQTMVDDLRAHHDDADAFVVLHGTDTMSYSSAALSYALADFGKPVIFTGSQHPLGKIESDATANVTGALNAAMSGRFHGVGLFFGHHLFAGNRVSKSSSWAFEGFSAPSVGPLARTGTPWHWYAGDAASAGYGWTSPQPYSRHDVAVIDMAPGISAARLEAMLTPRPEAVLLRAYGVGNVPSDEPGLTDVIADVLHDGVPVVIASQCQQAEVLLGHYETGDAIARAGAIGSGDMTLEATYAKIMFLLSQGVTRVDFGKWMRVSIAGEISPSSL
>NZ_AP012330.1|WP_004222899.1|60901_63436_+|HAD-IC-family-P-type-ATPase
MRRIIDICWRLCKQVPLLPITILSAIPLALLGEWKPWGEAAWDSWISQVGVDGLSAFNPGVGQWIVIALVAYTIVVTVRGMIDDLRHGHVGVDLLAVVAIASTVAVQEYWAAWAVVLMISSGEAIEEFAQSKAESNLTALIDAAPRTAHVVVLPGMRGHVHASGSEHTADVTADGFRTVRVSDSGETDNQDGEKRAFASESPETDTKGASQTYDAAGERFETVPVDQVQLGDVILVLPGETVPVDGELLSGVATLDLSNINGEPVPREVYAGARVMSGAVNGSTTLTMRATQLAHDSQYQKILELVSSAQESRPAVVKTADMLAVPFTVLSLAIAGIAWVVSGLPLRFAQVLVLATPCPLLIAAPVAYVAGTGRLAKAGILIKAQDVLENLGRVSHIFFDKTGTLTVKQPQVVRVEKPFGTSSPFNEDHILMMAGVVESYSVHILSKGIAAAGRKAMDDLYARYASGQRLCAERDLPGHGRDYPVVKNIVEDSGKGVSGEVNGHRVRVGRFAYATADESGFMPVLHMPNATYHVSDSPESDNQTGEMYARMSDSPETDIQRTEMRAYVSDSPESDTLGTRGGVSGEGRSTVVAPSVSVAAAQTASARKPETVGSLFAPLAPDEMAAYVAIDGKLAARIVLRDVPRANTKRSLARLHELGIKELSMLTGDKAASARIIANEVGIDDVQSELFPEDKVAAVKNATESMRQNQSMPARIIQRITGESKNRQVTMMVGDGVNDAPVLAVADIGMAMTDGTSTAASESAQVVIMNDDIASVPRAIAIARRTKNVMLQAVLIGLGLAIIGMVAAAFNLIPVVVGAFMQEVIDVVSILWALTVLFDRGESA
>NZ_AP012330.1|WP_004222897.1|58536_60522_+|trypsin-like-peptidase-domain-containing-protein
MAEENDQNAVQPQNDEQQTVPMPPVDAEQTQTYAGEPYAAESATEPIDVQGGIEDQPTAAMPVANDGASAESAAAAGDTPDYASAADERTVVGGSTQDAPAQQYRPAPEYGAYGPVPTQPADGTAAANDTANGAPNIPPQPQYGAYGQAPQQPQRPRNPFFGNPYVGGNQQNDQQNAQSNNGNPFMKPAAQGGANVPPAAPNTPNNGNPFGNPNNGNPFGAPQQNGAATKPKSASGVTGHVMTGVVAALVSAALCLGVGYAAITNGWVTVPTSSSLTSVKSNTSGSGSAKAKSGEAADWSAVAKEVSDSVVSIDVATSDGSAKGSGAIISDKGYIVTNNHVISGAKQIQVTLANGTIYSAQIVGTDTTTDLAVIKLDNPPSNLKAAEFADSDNLAVGESVMAIGNPLGYDDTATVGIVSALNRPVTVSDDNNNDIVTNAVQIDAAVNPGNSGGPTFNAAGQVIGINSSIASTTTSSGTAGSIGIGFAIPSNLVKRVANEIIDNGTVQHVALGVTIKSSTVEADGVTRGCTQVQSVVDNSPAAKAGVKAGDSIVAFNGKAVNNNYSLLGYVRASAMNDKVTLTVVRDGNTMELDVTLDQEESQTNSANSQNQRNNGNDGQSQNGNGNGYGNDGNGNGNGQSDGNGSNGYGDGGGLFDPFGLW
>NZ_AP012330.1|WP_033524171.1|56894_58199_-|tRNA-guanosine(34)-transglycosylase-Tgt
MSENLIEHPRGAEPGKPGRRDAFYFEQKTRLPDAADGKGRGGARYGRTGIIHTPHGDIHTPAFVPVATQAAMKAVLPETMKDLGAQCLLSNAFHLYERPGEQVLDEAGGLAKFMNWNGPTFTDSGGFQVLSLGAGFKKTLAMDVTGMKSDDVIAEGKERLAFVDEDGVTFKSPLNGSLHRFSAEISMGIQHKIGADIMFAFDELTTLMNTRGYQERSVERTYRWAQRCVAEHKRLTEERVGKPYQALYGVVQGANYEDLRRHAAEQIASLDFDGVGIGGAIEKRIIGDTCAWICDAMPESRPRHVLGIAAVDDIFACVENGGDTFDCVAPARCGRNGAIFTRGGRYNIKRAQFKHDFGPLEEGCDCYTCTHYSRAYVDHALRAREFNGFTLATIHNEHFFVKLLDDIRASIDGGYFNEFRDETLTRFYANGSRG
>NZ_AP012330.1|WP_004222890.1|56024_56246_-|hypothetical-protein
MPNPFHLSLVVSADCTEYGLAGEEFTVNAAGQSYISYADYAIAVVDEAEQAAHVGEPSPCTPSSTSFSCAVHV
>NZ_AP012330.1|WP_004222887.1|54957_55941_+|EamA-family-transporter
MAKQTSGQTSQSQKTSESQKTAKKTAKKTEHMLEQTPKSLLIGTGMTLLGGAMWGMNSTVAKLLMRDYQLDPIWLSCVRALFASLIFLVGSAITTPQKLAGAVKDVKSYPKYLVTTLICVLLVQVSYLMTIDWTNSGTATVLQTLNLIFVLAWVCLRGKRLPLKRELVGVLLAFAGTFLIATGGNFASLSLPWQGLAWGLVDAVSTAAMSILPVMLMLKWGNMTINGITFLMSGLILCPFAQPWANIPALDARGMLLLLYTIVCGTFLAFWLYMAGVMRVGAVRATMLGTSEPVMATVTAVAWAGEAFTFTDLTGFAMIIIMVFLVR
>NZ_AP012330.1|WP_004222885.1|53779_54859_+|alpha/beta-hydrolase
MEFMTITLIDEARYDAEMDETVLPALRNCMTEGWMEPATVDWDDNMLPKLEHPGRLHYYCYDAHKFDALREDGASGVFRGAVVISHGFTEFGRKYSEMVWYFLLAGYSVCVFEHRGHGHSTHDMSNPSLVWIDDWRRYVADFATFAQTVGRETAGDGPMYLYCHSMGGGIGAAVLERYPSLFDKAVLSAPMIAPVVGMPTWIARIVVGVICGLGFGKSRVFGHADFDGNLNLDDYHGASEARIRWFHKQRLADKSCQTNAATFDWANQAMALSRAVLKPDMCGAIESPVLLFQAGRDVWVLNGPQDDFVERVSEGGGFIEKVRYSQSLHEIFSMPNAVFGPYLDKILDFLAASNASLAE
>NZ_AP012330.1|WP_004222922.1|70351_71308_+|aromatic-amino-acid-DMT-transporter-YddG
MNTDQKLPAESAGERPSNPLFGHAISHAATLIGLFAIVLWGFMAGLVRLVSESFGATLGSALIYTVGGMLLLIVRRPKPISQAPRKYLVAGGLMFIAYEASISLSIGLATTNAQSVEVSLVNYLWPTLLVLMTAAVSHKRGSVSEALPGAIVATVGVAMAVGGENLDVQEAVANIASNPLPYALAFAGAFIWAIYATVTPSMSDGYDGTTIFFCCVAVVLWIIHFVSGDGLPAVAPGIGGYISLLACAASIAGGYACWGYGMLHGSMETLAIGSYATPLFSTASSTLLLGVTLGMPFWIGVALVVVGSLINVWFARRR
>NZ_AP012330.1|WP_004222924.1|71450_73775_-|YhgE/Pip-domain-containing-protein
MIWGIFKRDMCHATRNVIAVIVSMGLVVVPALYAWFNIAASWDPYGNTKALKVAVANNDKGYKSDLIPVRVNVGETIISTLHANDQLDWQFVKSDKAIDGVKSGEYYAAIVIPKGFSADMMTLFSPDIKHAQLKYYLNEKINPIAPHITDQGATTVVNTIDKTFAKTIAQVGLDLASSILHYSQSPQMAEYMRNLNGNLTTMADTLSGASQQVTSYSQLLGSANDIVDSTGKLLASATKAGKQAQNALKQGKSGATSLTSAGANVTSSVNTALDQVSDAFDQVAAKVNKAFDALGKDSDTAASQLTTLSEQVSSSESLYDTYITSLNHMHESVEQLPDSDSAKQALLEAIDREITLLEAAKGDSQKLAQQLKDASTQVTQDTAAAERSRKEILNRITSAKQSISNVRDDYATNVKPKIDALASTVSTLISQTDSMITQLSGTADDLDDVTGDVGTNVTSIRSTLGAIAKKLDSSAATVKELITKLETGGNAGDGNSDGGDGDNDASSSDSGESDELRALATANASTLSTLISAPVALHRVSVYPIANYGSAMAPFYTILSIWVGAIILCAMLKVTISDREKAHVLGLGDTLPRVAGPSGPGNASRWGLRLDHEYFGRYAIFALLALLQGTLVCLGDMYFLGVQANHALQFLAVGWLAALVFSNIVYTLTVSFGDIGKAVAVVLLVMQVAGSGGTFPIETLPKFFQMLYPFLPFPHAIDAMHAAMAGSYGNEYLLDMVYLALFLIPSLLLGLVLRKPVIRLNNWVSRNLESTKVM
>NZ_AP012330.1|WP_004222926.1|73777_76561_-|YhgE/Pip-domain-containing-protein
MHQVFAIFLRDVKRILKNPVALVVTLGVAIIPSLYAWCNILANWDPYANTGNIQVAVANEDKGTTSTLVGHLDAGQQTVNQLKKNHQLGWHFVPKQQAIEGVESGKYYAAIVLPEDFSSRLIGTVTGKGDRPSITYYINEKLNAIAPKITDTGATTIDEQINTTFVSSVADAVAKEVKEAAGETTGSVKSAQSDVINDLTDTINQLETVQQQLRDTRSTLDKALTTIDSAKQSNIALASEITNSLDTVGKASDLLSETRTQTERFSNTLVGALDNGSTQLSGLQVNVSNATGTVLSGLNTTQDALDQVSSTMHRINTTTGTVLDGVEKALQASQLDPNSQTYKDLSAQLAEARKQLTFQQQRIDAFDQDTTAAINAGKNTANGFNDDVTTLAKNGTASMTSARTTITGTVMPNLNTGLDTLSLANGSLSGTLTTLQSTLEQGNGLLDQLSRTVTQTNTTIAGTQTQLANLAKQLNTTRTDVAALSSSAMFQQLSQALGLDASEVGSFVGEPVHLDEQVLYPVKNYGSAVTPFYTNLALWVGGFVLVAIYKLEVDRDEKIRMYTPRQGYMGRWLLFVTVGFLQAIIATIGDLALGIQCEHPFLFILAGIFASFVYVNIIYALAVAFRHIGKAVAVILVIIQIPGAAGLYPIEMMPEFFRRLKPFLPFTYGINAMRGPIGGMYANHYWIDMLSLFWYLPVALFIGLVVRKLALNLNRLFDNRLADTDLMITEHNEGTVEPLRLTETAQQIAEEFPELARRRAIHFFRLYPRLVRWGFLALAVLPFVFLLLLFITRMKLAMLLGWIISIIAIDTYLIVVEYLRERYANYLGKEAMSAEEFRSAILHENLLFRPGMHYKPMHAIHTRLYAAAHGGSAGHAAGHAAGHAAGHAAGHAAGHAAEHAAEYTAEYAAGNTDGNAGRSLREEGNEQ
>NZ_AP012330.1|WP_033524162.1|76869_77937_+|class-II-fructose-bisphosphate-aldolase
MTIATPERYAQMLDAARRGGYAYPAINVTSTQTLNAALQGFAEAESDGIIQVSVGGAAYFSGQRVNDRVTGSLAFAAFAHEVAAKYPNITIALHTDHCAKQYLDEWVRPLLDHEVEQVKHGQEPTFQSHMWDGSTVPLGENLDIAEELLDKSQAAHTVLEIEIGAVGGEEDGHSAEINDKLYSTPAQGIAVAQRLGLGERGRYMAAFTFGNVHGAYKPGVVKLRPELLDEIQTTVALAIKAGEMPDPAHSLDVASGKPFALVFHGGSGSAPEEIAQAVSYGVVKMNIDTDTQYAFSRAVAGHMFSNYDSVLKIDGEVGNKKMYDPRSWGREAESAMAARVVEACRQLGSAGKALK
>NZ_AP012330.1|WP_004222937.1|78147_79434_+|adenylosuccinate-synthase
MPGIVLIGAQWGDEGKGKATDLIGTKVDYVARFNGGNNAGHTVVVGDESYALHLLPSGIISPNVTPVIGNGVVVDPEVLFEEIDGLESRGVDCSRLLVSEAAHVIAPYHRTLDKVTERFLGKHKIGTTGRGIGPAYADKINRVGIRVHDLFNAEHLHDKVEASLHQKNQMLVKLYNRRPIDVDETTDELLKLGERLKPYVANTSLVLNKALDEGKTVLFEGGQATMLDVDHGTYPFVTSSNPTAGGACTGTGVGPTKITRVIGVSKAYVTRVGEGPFPTELFGEDGEWLRAQGHEYGVTTGRPRRCGWFDAVVNRYAAQVNGLTDIVLTKLDVLTGLKEIPLCVAYDVNGERRDDMPTDQSEFAAAKPIYESMPGWDEDISQIHDFNDLPKTCQDYVKRLEELSGCRISVIGTGPQRDHIIQINSLVD
>NZ_AP012330.1|WP_004222940.1|79457_81041_+|ClC-family-H(+)/Cl(-)-exchange-transporter
MTGNDAAHDIRRLIPRFDHLKWKMAAAGIVVGLVSGLLVVVYRLGIEYGTDASRWIYARIRETPWLIAPWAVAAVAAALAIAWMVGKEPMAGGSGIPQTNGVVICGLKMRWQTILPVRFVGGLLGALFGLSLGREGPSIQIGASGAQCVSHRLRGRRREDMQEHYLVTAGAAAGLSAAFSAPLSGMMFALEGVHRSFSPAILMGATAASLTADFVSKYCFGLRPVLDFGDIGQLSLEEYVWLIPLGLVAGLVGSLMNRSLLGFQTLYGKLPARSRPMIAIAIALPVGIWLPDVLGGGSNLIDTAEHARVGLGMLCLLFVAKTLFTSTSFGSGAPGGIFMPILAVGSLAGGICGEVLHRFGDLPSDAVAVFAVCVMTGTLAASVKTPITSILLAVEMSGTLTHMLPVAAVAFIALLVSDLLRTKPIYGELLERYVRAQGMQMAIASHVGSGIMELPLEMGAIADGKRVRDVRWPSGCLIIGLRRGESEIVPRGDTRLRAGDYLVVLFSGEEEREVRPAMRRLCDARLD
>NZ_AP012330.1|WP_033524163.1|81227_82322_+|CrcB-family-protein
MESQEQSPGDVVTAGEDSHPITQTIDTVEVTHAGATAPAANTMDPPTIPLAPMKRMQARFNPLADGLMYVVVFVGGFVGVGCRHALDMLLPSVSGTPFVVGTFVSNMVACFLFAMLTEFMATASWLRRRVRQVVSRGVGLGLLGGLSTMSGVMLETMEGLHERHIASALGYLAGNFAGGLFTAAAGVVLMQALLSRSTRKRVRGAFSAVSVSDSAESDTQGVRHVKVADVARSAAQAAMEAAQAAQQAAQAAQQIAQTGQVPRVETPTVPPTASQPMQTGRVPQIPPLAVPQLTQPSQPLLREPDTPDLGQLPEPIQQSQPIQQPQQQSQPIRQPANPLPPSFEPKPITAEISLVADPATGEVR
>NZ_AP012330.1|WP_004222945.1|82321_82717_+|CrcB-family-protein
MMWMICLFGGLGAMARYVLDVSIQRGWNRENRRTSRNFPLSTLVINGVASLCAGIAMMSYYSQSVDMGTVMMFVVGFLGGFSTFSTALNEVVSLIRQRRFTLALGYGIATVAVPLICVATGFGIALLVNPA
>NZ_AP012330.1|WP_004222949.1|83361_84447_+|LacI-family-DNA-binding-transcriptional-regulator
MVGMRDVAKKAGVSLSTVSLVVNGNGYVSDDMRDRVRKAMQALNYVPNELARNLYHDRTNLVGVIVPTIRHPFFATFTAHLQHALAAQGLRTMLCSTADEAEGEIQYVDMLRRHMMDGIVMCAHTSHPGDYWTSIHRPIVAFDRVLGDGISSIGSDHEQGGRLIAQMLIRNGAKHVVMIGGPRDQFFDLAARGEVEEGSFDLGKTTFPTVRYYLTLEQELTSAGVKYEYVEAGEVMDFAGYHRAVSNVLDKVTTDGVDAVVSSDIGASFCVREALSRGISIPDELQIVAYDGTYLTDLAGMKLTAVAQDFAAIAQSAADHIVQAIANEEVAAANASRKNIPKPFEPNVLIPMTLVPGDTTR
>NZ_AP012330.1|WP_004222953.1|84710_86225_+|sucrose-phosphorylase
MKNKVQLITYADRLGDGTLSSMTDILRTRFDGVYDGVHILPFFTPFDGADAGFDPIDHTKVDPRLGSWDDVAELSKTHGIMVDAIVNHMSWESKQFQDVLEKGEESEYYPMFLTMSSVFPNGATEEDLAGIYRPRPGLPFTHYKFAGKTRLVWVSFTPQQVDIDTDSDKGWEYLMSIFDQMAASHVSYIRLDAVGYGAKEAGTSCFMTPKTFKLISRLREEGIKRGLEILIEVHSYYKKQVEIASKVDRVYDFALPPLLLHSLNTGHVEPVAHWTDIRPNNAVTVLDTHDGIGVIDIGSDQLDRSLKGLVPDEDVDNLVNAIHANTHGESQAATGAAASNLDLYQVNSTYYSALGCNDQHYIAARAVQFFLPGVPQVYYVGALAGKNDMELLRKTNNGRDINRHYYSTAEIDENLQRPVVKALNALAKFRNELDAFDGTFSYSADGDTSISFTWEGTTTQATLTFEPGRGLGVENTASVATLEWRDAAGEHRTDDLIANPPVVA

Crispr_ID: NZ_AP012330_5

• CRISPR_ID: NZ_AP012330_5
• CRISPR_location: 105598-105723
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NZ_AP012330_5

Consensus_repeat	Method
TGTCCGATTCTGCAGAATCGGACA	CRISPRCasFinder

spacers of NZ_AP012330_5

>5.1|105622|27|NZ_AP012330|CRISPRCasFinder
ATCAAACGGGCGAAAACGGGTCCCAGA
>5.2|105673|27|NZ_AP012330|CRISPRCasFinder
CGCAGGATGGCAAACGTGCCGCACGGG

CRISPR arrays and Neighbor proteins around NZ_AP012330_5

CRISPR arrays

The CRISPR arrays of NZ_AP012330_5

>merge|NZ_AP012330|5|105598-105723|CRISPRCasFinder
TGTCCGATTCTGCAGAATCGGACAATCAAACGGGCGAAAACGGGTCCCAGATGTCCGATTCTGCAGAATCGGACACGCAGGATGGCAAACGTGCCGCACGGGTGACCGATTCTGGTGAATCGGACA

>NZ_AP012330|5|5|105598-105723|CRISPRCasFinder
TGTCCGATTCTGCAGAATCGGACA	ATCAAACGGGCGAAAACGGGTCCCAGA
TGTCCGATTCTGCAGAATCGGACA	CGCAGGATGGCAAACGTGCCGCACGGG
TGACCGATTCTGGTGAATCGGACA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP012330.1|WP_004222996.1|103403_104873_-|amino-acid-permease	unknown	unknown	gnl|CDD|224038
NZ_AP012330.1|WP_004222967.1|93045_94647_+|MFS-transporter	unknown	unknown	gnl|CDD|349949
NZ_AP012330.1|WP_004222961.1|90966_91857_+|sugar-ABC-transporter-permease	unknown	unknown	gnl|CDD|224096
NZ_AP012330.1|WP_004223004.1|108314_109811_-|cation:proton-antiporter	unknown	unknown	gnl|CDD|223551
NZ_AP012330.1|WP_004223015.1|114584_116120_+|isopeptide-forming-domain-containing-fimbrial-protein	unknown	unknown	gnl|CDD|275067
NZ_AP012330.1|WP_003833695.1|118984_119899_-|thiazole-synthase	unknown	unknown	gnl|CDD|234687
NZ_AP012330.1|WP_004223008.1|110105_110567_+|hypothetical-protein	unknown	unknown	unknown
NZ_AP012330.1|WP_033524175.1|117309_118857_+|amino-acid-permease	unknown	unknown	gnl|CDD|224038
NZ_AP012330.1|WP_004223027.1|119982_120696_-|sulfur-carrier-protein-ThiS-adenylyltransferase-ThiF	unknown	unknown	gnl|CDD|236320
NZ_AP012330.1|WP_004222986.1|102056_103091_+|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl|CDD|224525
NZ_AP012330.1|WP_004222972.1|95099_96449_+|MHS-family-MFS-transporter	unknown	unknown	gnl|CDD|340927
NZ_AP012330.1|WP_004222977.1|98166_99207_+|ketol-acid-reductoisomerase	unknown	unknown	gnl|CDD|235491
NZ_AP012330.1|WP_022244792.1|116445_116952_+|hypothetical-protein	unknown	unknown	unknown
NZ_AP012330.1|WP_034878339.1|96757_97810_+|ketol-acid-reductoisomerase	unknown	unknown	gnl|CDD|235491
NZ_AP012330.1|WP_022244745.1|99348_101166_+|sialate-O-acetylesterase	unknown	unknown	gnl|CDD|377084
NZ_AP012330.1|WP_004223011.1|112002_114435_+|VWA-domain-containing-protein	unknown	unknown	gnl|CDD|238119
NZ_AP012330.1|WP_003833700.1|120823_121018_-|sulfur-carrier-protein-ThiS	unknown	unknown	gnl|CDD|340451
NZ_AP012330.1|WP_022244795.1|110641_111757_+|class-C-sortase	unknown	unknown	gnl|CDD|320676
NZ_AP012330.1|WP_004222994.1|103121_103388_-|hypothetical-protein	unknown	unknown	unknown
NZ_AP012330.1|WP_004222963.1|91856_92714_+|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl|CDD|223472

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_AP012330.1|WP_004222996.1|103403_104873_-|amino-acid-permease	gnl|CDD|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	8.16768e-179
NZ_AP012330.1|WP_004222967.1|93045_94647_+|MFS-transporter	gnl|CDD|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	3.95767e-12
NZ_AP012330.1|WP_004222961.1|90966_91857_+|sugar-ABC-transporter-permease	gnl|CDD|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.68555e-67
NZ_AP012330.1|WP_004223004.1|108314_109811_-|cation:proton-antiporter	gnl|CDD|223551	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	4.88384e-34
NZ_AP012330.1|WP_004223015.1|114584_116120_+|isopeptide-forming-domain-containing-fimbrial-protein	gnl|CDD|275067	TIGR04226, Fimbrial_subunit_type_2, fimbrial isopeptide formation D2 domain. The Streptococcus Pneumoniae pilus backbone protein, RrgB, has three tandem domains with Lys-to-Asn isopeptide bonds, but these three regions are extremely divergent in sequence. This model represents the homology domain family of the D2 domain. It occurs just once in many surface proteins but up to twenty times in some pilin subunit proteins. Three of every four members have the typical Gram-positive C-terminal motif, LPXTG, although in many cases this motif may be involved in pilin subunit cross-linking rather than cell wall attachment. Proteins with this domain include fimbrial proteins with lectin-like adhesion functions, and the majority of characterized members are involved in surface adhesion to host structures.	3.06326e-13
NZ_AP012330.1|WP_003833695.1|118984_119899_-|thiazole-synthase	gnl|CDD|234687	PRK00208, thiG, thiazole synthase; Reviewed.	4.41185e-139
NZ_AP012330.1|WP_033524175.1|117309_118857_+|amino-acid-permease	gnl|CDD|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	3.99494e-152
NZ_AP012330.1|WP_004223027.1|119982_120696_-|sulfur-carrier-protein-ThiS-adenylyltransferase-ThiF	gnl|CDD|236320	PRK08644, PRK08644, sulfur carrier protein ThiS adenylyltransferase ThiF.	1.61929e-117
NZ_AP012330.1|WP_004222986.1|102056_103091_+|LacI-family-DNA-binding-transcriptional-regulator	gnl|CDD|224525	COG1609, PurR, Transcriptional regulators [Transcription].	9.46221e-72
NZ_AP012330.1|WP_004222972.1|95099_96449_+|MHS-family-MFS-transporter	gnl|CDD|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.42072e-173
NZ_AP012330.1|WP_004222977.1|98166_99207_+|ketol-acid-reductoisomerase	gnl|CDD|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	0
NZ_AP012330.1|WP_034878339.1|96757_97810_+|ketol-acid-reductoisomerase	gnl|CDD|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	0
NZ_AP012330.1|WP_022244745.1|99348_101166_+|sialate-O-acetylesterase	gnl|CDD|377084	pfam03629, SASA, Carbohydrate esterase, sialic acid-specific acetylesterase. The catalytic triad of this esterase enzyme comprises residues Ser127, His403 and Asp391 in UniProtKB:P70665.	5.42892e-08
NZ_AP012330.1|WP_004223011.1|112002_114435_+|VWA-domain-containing-protein	gnl|CDD|238119	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.	7.44571e-17
NZ_AP012330.1|WP_003833700.1|120823_121018_-|sulfur-carrier-protein-ThiS	gnl|CDD|340451	cd00565, Ubl_ThiS, ubiquitin-like (Ubl) domain found in sulfur carrier protein ThiS. ThiS, also termed Thiamine biosynthesis protein (ThiaminS), is a sulfur carrier protein involved in thiamin biosynthesis in prokaryotes. It has the beta-grasp ubiquitin-like (Ubl) fold with low sequence similarity to ubiquitin (Ub), and is activated in an ATP-dependent manner by sulfurtransferases, similar to the activation mechanism of Ub-activating enzyme E1. ThiS has common evolutionary origin with Ub-related protein modifiers in eukaryotes, a beta-grasp fold as Ub, and is closely related to proteins MoaD and Urm1.	5.07795e-21
NZ_AP012330.1|WP_022244795.1|110641_111757_+|class-C-sortase	gnl|CDD|320676	cd05827, Sortase_C, Sortase domain found in class C sortases. Class C sortases are membrane-bound cysteine transpeptidases broadly distributed in Gram-positive bacteria (mainly present in Firmicutes and Actinobacteria). They function as pilin polymerases responsible for the assembly of pili, which are multi-subunit hair-like fibres that extend from the cell surface to promote microbial adhesion and biofilm formation. First, one or more class C sortases form the long thin shaft of the pilus through linking together pilin subunits via isopeptide bonds. The base of the pilus is then anchored to the cell wall by a housekeeping sortase or, in some cases, the class C sortase itself. Depending upon the organism both the number and type of sortase enzymes involved varies, and in some cases, accessory factors appear to be needed. In three-component spaA pilus from Corynebacterium diphtheriae, the prototypical class C sortase (named Cd-SrtA) catalyzes polymerization of the SpaA-type pilus, consisting of the shaft pilin SpaA, tip pilin SpaC and minor pilin SpaB. The pilus shaft is then attached to the cell wall by a housekeeping class E sortase, Cd-SrtF. In the absence of Cd-SrtF, Cd-SrtA attaches the pilus to the cell wall, albeit at a reduced rate. Cd-SrtA can recognize two distinct sorting signals (LPLTG in SpaA and SpaC, and LAFTG in SpaB) and it can employ lysine residues that originate from different proteins (either Lys190 within the pilin motif of SpaA or Lys139 in SpaB). However, Cd-SrtA cannot be able to polymerize the major pilin subunit SpaH, even though it contains LPLTG motif. In two-component pili of prototypical Bacillus cereus, the class C sortase (named Bc-SrtD) cleaves related sorting signals within a major pilin protein BcpA (LPVTG) and a minor tip pilin BcpB (IPNTG), and catalyzes a transpeptidation that joins the threonine residues in each signal to the side-chain of Lys162 in BcpA (located within a pilin motif). Unlike the SpaA pilus in C. diphtheriae, in B. cereus Bc-SrtD is unable to covalently attach the pilus to the cell wall without the help of the housekeeping sortase.	1.95672e-85
NZ_AP012330.1|WP_004222963.1|91856_92714_+|carbohydrate-ABC-transporter-permease	gnl|CDD|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.66477e-70

Protein sequences

>NZ_AP012330.1|WP_004222996.1|103403_104873_-|amino-acid-permease
MSDATVAKKPRETDDVPVPPTLRKSLKNRHIQLIALGGAIGTGLFYGSSESIQLAGPAILLAYLIGGLAIFLIVRALSEMAVEDPKAGAFSYYATQYWSKRAGFISGWNYWFNYVLVAMVELAVVGSFVNYWFPNIPKWVSAAVFLVAIAALNLMGVNKFGEFEFWFAIIKIVAVLAMIFGGLYVIIANVPTASGIRASFANWFTVDGGFLPHGLMSRNADGTWTGLLMALVVVMFSFGGTELIGITAGETENPRTTIPKATNGIIWRILVFYICALGVIMAVVPWSTIDGNSSPFVQIFDSVGVHAAAGILNFVCLTAVMSVYNSGLYANSRMLYSLAKQGNAPAYLGRLNKRGVPVGGVITSAIIIAIAVVVVFVWPDFAFNYLMSIATIAAAINWIMIMITEIKFRRVVAAGDGPNDLKGLKGQEALDKLAFKLPFAKVTPYVVIAFMLLVVVLMCFSASYRIAVVAGVIWLVVLFAAYQITQKRA
>NZ_AP012330.1|WP_004222994.1|103121_103388_-|hypothetical-protein
MRPCLKRGARALFDFRLRFQISDFDFQSAIPGLFWGLAPFDLWYLSKQSGNTVAILYGVTLAAIAAIGSLLAFILPLSGRSKCAIAIF
>NZ_AP012330.1|WP_004222986.1|102056_103091_+|LacI-family-DNA-binding-transcriptional-regulator
MPIQKSKVTIFDVAKASGVSSSAVSYALNGKSGVSDVTRDKVLKVAHELGWKPNGAAQALAKAKTQRVGLALGYDPKLLSVESYMMELISGLGAELEKYDYSLLVRMAVGEDAKLSIIDDWIATGNVDAMLLVNVELGDPCVALLEEHEEMPVLAIADASVVGNLPSLSSADADAVRRAVRYLYDLGHRQIARVGGPESLAHSYIRDSAFADVASELGMRYRCLHTDYTPETGREATKRLLAFSEHPTAIIYDNDVMALAGLGVAASQGIKVPEEISIMSWDDSLMCTAAYPNLTAMGRDVVDTGKQAAGLLLKLIGGERVGHLMEGPYELRARASTGPAPAAE
>NZ_AP012330.1|WP_022244745.1|99348_101166_+|sialate-O-acetylesterase
MVTATGPAPGSEMTTSAEPTEDRSTSGVLHVAAIFASHMVLQRNKPIAVFGALDADCAGLEVSAEIRDFDGSVIVQAHAYASKEIKNGFSPWRVMLPAQPEGGPYTLRVTAGNDFIEYYDVLIGEVWLAGGQSNMELELRNSEDAEEALDNCADPLLRFYNVPKTGVINRNAEHAASWQESSPENSGVMSAVAYYFARKLRDELDSDLPIGIIDCYIGGTSISCWTSEDALNSSESGRGYLARYEQAIAGKTQEQFDLEYGEWQSRSDTWNASIAAAREDDPDVTWDTLTQQYGECPWPPPMTPTSQWRPSGAFHAMLERIVPYSLAGFLWYQGEEDEPYCGSYRELLGMMIGEWRALWSESLPFLIVQLPQWIDKKVDEGDGDPMLWPVLREAQWDAAQSIDNVFAICTMDCGEYNNIHPVDKRTPGERLGNCALRQVYGMSRIPVYGPTVLGFRCDEGGRVRLFFRYAHGLHFSGTAPDSFGDEFAKSLPSLVRLPERSGFELAGADGVFHPAYAAIFVDCDIDDLVNAKVNVVDYNATEFGIPINSRSIGTITLATPEVPAPVMMRYAWRSWGPAPLFNDNNLPAHPFKLDLTDHTDSDHAE
>NZ_AP012330.1|WP_004222977.1|98166_99207_+|ketol-acid-reductoisomerase
MAAQIWYENDGDLSVLEGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLRPTSKSVEHAKEQGLEVKSVPEAAAEADIIMILAPDQYQRTIWANDIEPNIKPGAAVAFAHGFNIHYGYIKPSEDHPVFMVAPKGPGHIVRREYANGRGVPVVVAVEQDPRGDAWDITLAYAKALGALRAGAIKTTFTEETETDLFGEQNVLMGGVNKLVEMGFEVLTDAGYQPEIAYFEVCHELKMLVDLMNEGGLNKARWSCSDTAQYGDYTNTCIDEHVRERMQYHLQRIQDGSFAKEFIEDQDAGAPKFKALQEEYGNVRIETVGPKLRAMFSWNNGKDDDADMATFTGKIARG
>NZ_AP012330.1|WP_034878339.1|96757_97810_+|ketol-acid-reductoisomerase
MAATIWYEKDADLSVFDGKKVAILGYGSQGHAHALNLRDSGVDVVVGLRPTSKSVEYAKEQGLEVKPVAEAVAEADVVMILLPDQYQAAVYKKDVEPNLKPGAALAFAHGFNIHYGYIKPSEDHPVFMVAPKGPGHIVRREYAAGRGVPVVVAVEQDPDGKTWPLCLAYAKALGALRAGAIKTTFTEETETDLFGEQDVLMGGINHLCDMGFDVLTEAGYQPEIAYFEVFHELKMLVDLANEGGLNKARWSCSDTAQYGDYTSTVITEETKKRMQYQLKRIQDGSFAKEFMDDQAAGAPKFKELQEEYSHPHLETVGPKLRAMFSWNNQTDADADMAESFNGKIARTQVQ
>NZ_AP012330.1|WP_004222972.1|95099_96449_+|MHS-family-MFS-transporter
MSAVEAAAGKAQAMVRDSVKTVIAASMVGTAIEFYDFYAYGTAAANYFPKVFFGDTTNPTVALLASLLTFAIAFIARPLGSLVFGHFGDRMGRKTTLVVSLLTMGIATFLIGCLPTYSQWGIVAVAALCLCRFVQGIGLGGEWSGAALVATENAPEDKRALYGSFPELGAPIGFFLSNGTYFLLETFNDDDAMLAWGWRVPFLLSAVLVIVGLVVRVQMEETPIFRMAQEQKKVVKSPLTEVFKKSWKEVIQATFLVAVTYTLFYTLATWSLAWGTKTVEQGGGDLGFTNREYLLMLMLAICVFAAFIVISCVNADKFGRKRVIVISSCCLVAFALLFPFLLDPSVVGQRNFAANLLFLCIGFALMGTAFGPIGAFLPELFDANVRYSGSGIGYNLAAIVGAAFVPTIATWLSHHWGVHSVGLYLGVMAVCCLVAVLSCKETKDVDFTK
>NZ_AP012330.1|WP_004222967.1|93045_94647_+|MFS-transporter
MTEDNQHNAGEQQTPMQPQPLPGQVFVRPGIDDRPDYEKTLTEETKAALKRLAVQQNPRVPEASNERPEVQQTLINTEGGSPLTAFAHLDAAVPNLESSFLDLRDPMTAPDGTTPTKPQVHRLTAGFALGALLFTAPMAALNSVLIPQTISRLSGTDRVTDLALLSVVGTLLTFLMNAWISVGSDHSYCPLGRRTPWIIAGTVLTATSVAILSACDFMPLVIVFWLFTLIGHAMVSMPLAAAFGERVPDKFRDRADAWRGVGQAFGQVLGIIAAVSITWAADDSGWDGTTRFAMMVFALCLVVAGVATLLVLPFEGSSSYLPREGVKKGDYFSQYRPPKGAPKFFIAFAARMFAIAATSGIAIYQWYLAQDGLGDVSQVTMFGLSGAAAVMSMMAVAAFVGSLLAALLLGRIARAFKDSRIPAIAACLLFVVAVVLPLTPIDSAMAVALYALFAGFAYVVYDGVSQGLNLATLPDVRSVGRSLAAFSLANTFGSLIGAVVCAIAIAVTGEYLLIFAVAAGCMAVAGVLTLLLK
>NZ_AP012330.1|WP_004222963.1|91856_92714_+|carbohydrate-ABC-transporter-permease
MKGQTSTRTKVLHALMIVVLTILLLLFIAPFILVVINVFKTKADINTAPLALIGKHGFTLENFPRAMDKMNFVTVFGNSAVITISATILTILFSAMCAYVIVRNPSWKFGGMVFALMVASMVIPFQVLMVPLVSVYGGLLDVLNSRITLILMHTGFSVSLAVFMFHGAIKTNIPNELEEAASIDGCSKWRTFWTIVFPLLKPTVATVAIIDAMAFWNDYLLPSLVLGRRELYTIPIATQIFYGTYSNDIGLIMAALLLAMLPILILYLFLQRYIVEGVTSGAVKG
>NZ_AP012330.1|WP_004222961.1|90966_91857_+|sugar-ABC-transporter-permease
MGSIMKQNKLSYKIGQFLMFGGPATILFFAVVILPFFYGLYLTLTSWDGVSTTKPFVGLENYKAALADTAYWQSLGRTFIYSVIAVILTNIVAFLLAYLVTSGIKGQNFFRAGFFIPNLIGGIVLGYVWKFVFNRAFVAIAEVATQTDHASLLSTPNGAMFCLILVSVWQYAGYMMLIYVAGFMSVDQSLKEAAMIDGCNKGKAMWHVVIPLMRSSFVQCIFLSTTRCFMVYDLNLSLTKGEPFNQSVLAAMHVYNQAFVYKNYGTGQAEALVLFIVCAVIGMLQVYFGKKGEVAA
>NZ_AP012330.1|WP_004223004.1|108314_109811_-|cation:proton-antiporter
MTQELVSLTIIMAVTAVSPIVAQLIPGRFIPQTVLLLVTGAALGPYGLGVIEVNDAVKLLSELGMAFLFLLAGYEIDPKRLAGHQGKVGLVTWIITLGLAGLVVTLLPFFAKQGINGIATVIALTTTALGTLMPILKERNLEGTPIGDAIISYGTWGELGPILAMAILLSTRTGWQTMLVLGAFLTICLLCAMLPTKALKTGHRLYRFLTENANTSSQTLMRLTTFLLIFLVTISALFELDAVLGAFAAGFILRYIIPDGSKSLEMKLEGVGYGFLIPVFFVVSGAAINVRAVAGRPALLVAFIVMLMLIRAVPVYVALSLDKRENPLSSHHRVTVALYCTTALPIIVAVTSLAVKVGTMQGDTASTLVAAGAITVFLMPLLGSITYQVADVHPVTAVREIAHTPSDWRTIVHEHAQVRALLHHQDRLKRMAETLDALEKMGTMGHGDAAHSNAGHGDEYRAELVKRARREIDRQLKELGLDPQLTTQLPHNYRYPKN
>NZ_AP012330.1|WP_004223008.1|110105_110567_+|hypothetical-protein
MVDGKFTAKERAYLASLPAVESVSASHIRYADSFRIEVMCRYNAGESPAAIFREAGLDPKLIGYKRIERCIARWKKQEERDRRNSKRVDRDDLLVIRHHDLMRDDAQSSATESQDALSKLAQAQLIINQCDELIAKQALRIDELERVLRKLVG
>NZ_AP012330.1|WP_022244795.1|110641_111757_+|class-C-sortase
MGGRLSLESRFPSFEEAIDVADEMRQRRHARGKTLAMRAIAALLIVAAICIGGFPAMLQYRSARDLSGTSVRSAHTVAGWPYPQADDAFAAAQDYNKRLAESGQPILGEAKDPFADVRGGSRASVSDSGESDNEAGESGPQLSDSGESDNQSGAGTGADAGSADAGSASASSADAEYRSLLDSGGGVMGTIRIPKISVRLPIYHGTSESALASGAGHLYGSSLPVGGKSTHAVLTGHRGLVEAAMFTRLDEMRVGDYFYIEVMGRTLGYQVDRITVIEPNDTSQLKIVPGEDRVTLMTCTPYGVNTHRLLVSATRSAIPDEIPAENDAVKDARAIGAITGIATLVVGVLLVWLRRKPWHIRRHAAWWPKRG
>NZ_AP012330.1|WP_004223011.1|112002_114435_+|VWA-domain-containing-protein
MHMRHAHNEAKPRGSFVQRMVAALAAIAMLGGLGYVTTSSAIAEDDQNPSGDTSTLQPANSKSIAKIEGGDGDQYALHLTASGDSSSSTVTTAVPADIVLVLDKSGSMKNSNRDTNAKNAATALASKLLTAANAALPAEQQVQMAVVTFSDRARTTSQFTTSPGAIGTAVSAWPNGGTNWEDALKTANDLSSGRSGVQKHIVFLSDGNPTFRITSYSGCFKWSGFGQGWESHPEYGTQAECEANNKWLDQSYQWKTDPDGSDGNIHGEGDDDSYGYNYAAALSEANERGNAALYVVKVSADANKMSDLAKEANAVTGKEYDGTSAENLTKAFEQIYNTITTTAKIRAYSITDTLSQWVDPVDFADVANGADITQYVTVTNNGTTVSGYTAVYNVDDNGNRTITVTFNNGNGMIVDKNETIDVSFKVKPSDAAYADYASKQQYPDTGEANTGNESAGKQGYFSNAGAHLNYCVVTSVNDQESECTQQTLDYAKPVVQVRLGQITINKVWSDGASKHASDAVTVQLQRTKTGEAAAQAEKVGDPITLNASNNWTATIGRLQPGYTYSVAETSEDSRYAVSYQYGNAASNATGVDLTKAMVWQSDGNGGNMTATLTNTLKSATLSNVITVQKILEGRDWKAGDSFDFELTADGNAPLPADCAQQAQQSCKVTVAYDADSPDSQHSATFGDITYNAGKADYTYTITEGNGNIAALHYSGAKYQIVVAVTETNGAWTASVKSVTKLLDDNGKNVSESQKIGDPIAFTNTYVAVSALPLTGGTTDRQWLLVGGSIGGLAVLLVGAAGVWNSRKRLV
>NZ_AP012330.1|WP_004223015.1|114584_116120_+|isopeptide-forming-domain-containing-fimbrial-protein
MKMRKLFAGIAAAATLLGGMALGATSAQADGSGTVVKSDVNFTFTAQDAKQLTNRKLDAYKIADYVQYGTGSNATYGVQTAGTVTDNSGIKAALEAAVAGTNKTVPTDGGDLMAWALAEGVLSVDNSADGAWNNSASRKFVESLKTTTDKLGTAEEVDLGAAANGTSATVTLPTGLYLFVDADYSVGTNGAATPSIAILVGSGNVKDGVLNPLTEATVTIKNQTTTVSKTVSAATASAGQTVTYTITSKVPQNTQYYSDYAYTYTDTPSAGQTVNLNSLKVKVANAELKKDTDYTVTGGANGQPFTVAIRSIQTQRAGAEIAVTYNATVTSEEAAGSKAVTNTVVLSDNGAEATDSTTITNGQFSFTKTDAQGNALAGAKFEIEGQNGASTPSTATATSESNGTVTFKGLADGTYKVTETEVPAGFQPNLKAAFTVTITNGKAVKYTGADIWGLAPSTEVSDNYTYKVKNVKNVTQLPLTGAAGTTLFTVVALLVAGAGVTVALKSRQRVR
>NZ_AP012330.1|WP_022244792.1|116445_116952_+|hypothetical-protein
MARGGGAFSDEEIQLLRGLPAVANVTRNRITYADSFKQVCTIRYLTGESPTKIFREAGLPPDLIGYKRIERCVDRWKTSAIKSVTGSGNMSDSEIIAQLVNRYEHAFVMRRNLDSITNRTMEHIPVKAQGDDGIDVGTASIIIKQQARRIDELERANAELRGQIAATA
>NZ_AP012330.1|WP_033524175.1|117309_118857_+|amino-acid-permease
MCGSRGRVVNIMTSENTNSAGSSAAHIKSVESLDQSNEMERGLKNRHVQFIAIGGTIGTGLFLGSGKSIALTGPSIIFVYIGVGLIMFLLMRAIGEMMYSDPSQHTFINFITRYLGRGWGKFAGWTYWIVLILTGMTEITAVSTYFVTFFGTFGIDLNSWKWLIELCFLVALTGINLIAVKVFGEAEFWFSMIKITLIVGLIVTAIVMLVIGFSYPATHIEGVDGTVSGATVSLTNITDGFQLAPNGWMNFFMSFQMVFFAYQLIEFVGVTVSETQNPREVLPKAVNELIVRILIFYVGALIAIMAIVPWRNFHENSDGSFGSPFIMVFKYAGLDWAAALVFFVVITAAASALNSLIYSAGRHLYQLASDSESPAMARLAEVSEHKVPAKAIVASGCMILFSPIINAIPGISGAFVLFASAASAVVIFIYVLTMLAHRKYRQSSDFLPDGFVMPAWQVLDWIAIAFFVLVYVTLFLSADTIGSAIAGLIWLVAFGGYCLLHERFQNRDLKEALPR
>NZ_AP012330.1|WP_003833695.1|118984_119899_-|thiazole-synthase
MSTENTITTAEKDFAAAPNATLDELVGTTTNTALLPEPDAHAYDEIATGDADPLILGGHKFTSRFILGSGRYDLNLIKATIENAGTQIVTMALRRCRTTENNLLDYIPKGITMLPNTSGARNAEEAVRIARLAREVCQTDFVKVEIEHEAKYLLPDNEETIKATKQLAKEGFVVMPYMFPDPIAAKRLEDAGAACVMPLGAMIGSNKGLRARDFIEVIIKNSNVPVIIDAGIGRPSQAAEAMEMGADAVMAYTAIASAGNIPLMARAFKKAIEAGREAYLSGLGKVTEDHAVPSSPTNEADYIG
>NZ_AP012330.1|WP_004223027.1|119982_120696_-|sulfur-carrier-protein-ThiS-adenylyltransferase-ThiF
MTFEPSISQAQIDARQHAFDNQPDPTTLVSREEIRAALLDRHTAATQDKLDAAHVAICGCGGLGSTIAVALTRIGVGHLHLIDFDRVDMTNLNRQQYFLKDLGQYKTEALRSNLRQINPFIDITIDTVKVTDENVPMLFGNEDIICEAFDVPENKTMLVNAVLENLPNKKLVSASGMAGFRSSNLVNTRRVSKNFYFCGDGETAPVPGAGLMAPRVGVVACHEANMITRLILGEEDA
>NZ_AP012330.1|WP_003833700.1|120823_121018_-|sulfur-carrier-protein-ThiS
MIINGKEENIATPITVAELIESKGLRADRVAVELNGEIVPRTQRAQTQLKGTDTLEIVTFVQGG

Crispr_ID: NZ_AP012330_6

• CRISPR_ID: NZ_AP012330_6
• CRISPR_location: 108157-108283
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NZ_AP012330_6

Consensus_repeat	Method
TGTCCGATTCTCCAGAATCGGACAA	CRISPRCasFinder

spacers of NZ_AP012330_6

>6.1|108182|26|NZ_AP012330|CRISPRCasFinder
CTAGACGGGTAAAAGTGCGTTACGGT
>6.2|108233|26|NZ_AP012330|CRISPRCasFinder
GTAATGCGGCGAAAGTGCCCTGTGGT

CRISPR arrays and Neighbor proteins around NZ_AP012330_6

CRISPR arrays

The CRISPR arrays of NZ_AP012330_6

>merge|NZ_AP012330|6|108157-108283|CRISPRCasFinder
TGTCCGATTCTCCAGAATCGGACAACTAGACGGGTAAAAGTGCGTTACGGTTGTCCGTTTCTCCAGAATCGGACAAGTAATGCGGCGAAAGTGCCCTGTGGTTGTCCGTTTCTCCAGAATCGGACAC

>NZ_AP012330|6|6|108157-108283|CRISPRCasFinder
TGTCCGATTCTCCAGAATCGGACAA	CTAGACGGGTAAAAGTGCGTTACGGT
TGTCCGTTTCTCCAGAATCGGACAA	GTAATGCGGCGAAAGTGCCCTGTGGT
TGTCCGTTTCTCCAGAATCGGACAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP012330.1|WP_004222996.1|103403_104873_-|amino-acid-permease	unknown	unknown	gnl|CDD|224038
NZ_AP012330.1|WP_004222967.1|93045_94647_+|MFS-transporter	unknown	unknown	gnl|CDD|349949
NZ_AP012330.1|WP_004222977.1|98166_99207_+|ketol-acid-reductoisomerase	unknown	unknown	gnl|CDD|235491
NZ_AP012330.1|WP_004223004.1|108314_109811_-|cation:proton-antiporter	unknown	unknown	gnl|CDD|223551
NZ_AP012330.1|WP_033524175.1|117309_118857_+|amino-acid-permease	unknown	unknown	gnl|CDD|224038
NZ_AP012330.1|WP_004223015.1|114584_116120_+|isopeptide-forming-domain-containing-fimbrial-protein	unknown	unknown	gnl|CDD|275067
NZ_AP012330.1|WP_003833695.1|118984_119899_-|thiazole-synthase	unknown	unknown	gnl|CDD|234687
NZ_AP012330.1|WP_004223008.1|110105_110567_+|hypothetical-protein	unknown	unknown	unknown
NZ_AP012330.1|WP_033524180.1|105125_108143_+|FtsX-like-permease-family-protein	unknown	unknown	gnl|CDD|223650
NZ_AP012330.1|WP_004222986.1|102056_103091_+|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl|CDD|224525
NZ_AP012330.1|WP_004222972.1|95099_96449_+|MHS-family-MFS-transporter	unknown	unknown	gnl|CDD|340927
NZ_AP012330.1|WP_004223027.1|119982_120696_-|sulfur-carrier-protein-ThiS-adenylyltransferase-ThiF	unknown	unknown	gnl|CDD|236320
NZ_AP012330.1|WP_022244792.1|116445_116952_+|hypothetical-protein	unknown	unknown	unknown
NZ_AP012330.1|WP_034878339.1|96757_97810_+|ketol-acid-reductoisomerase	unknown	unknown	gnl|CDD|235491
NZ_AP012330.1|WP_022244745.1|99348_101166_+|sialate-O-acetylesterase	unknown	unknown	gnl|CDD|377084
NZ_AP012330.1|WP_004223011.1|112002_114435_+|VWA-domain-containing-protein	unknown	unknown	gnl|CDD|238119
NZ_AP012330.1|WP_003833700.1|120823_121018_-|sulfur-carrier-protein-ThiS	unknown	unknown	gnl|CDD|340451
NZ_AP012330.1|WP_022244795.1|110641_111757_+|class-C-sortase	unknown	unknown	gnl|CDD|320676
NZ_AP012330.1|WP_004222994.1|103121_103388_-|hypothetical-protein	unknown	unknown	unknown
NZ_AP012330.1|WP_004222963.1|91856_92714_+|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl|CDD|223472

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_AP012330.1|WP_004222996.1|103403_104873_-|amino-acid-permease	gnl|CDD|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	8.16768e-179
NZ_AP012330.1|WP_004222967.1|93045_94647_+|MFS-transporter	gnl|CDD|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	3.95767e-12
NZ_AP012330.1|WP_004222977.1|98166_99207_+|ketol-acid-reductoisomerase	gnl|CDD|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	0
NZ_AP012330.1|WP_004223004.1|108314_109811_-|cation:proton-antiporter	gnl|CDD|223551	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	4.88384e-34
NZ_AP012330.1|WP_033524175.1|117309_118857_+|amino-acid-permease	gnl|CDD|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	3.99494e-152
NZ_AP012330.1|WP_004223015.1|114584_116120_+|isopeptide-forming-domain-containing-fimbrial-protein	gnl|CDD|275067	TIGR04226, Fimbrial_subunit_type_2, fimbrial isopeptide formation D2 domain. The Streptococcus Pneumoniae pilus backbone protein, RrgB, has three tandem domains with Lys-to-Asn isopeptide bonds, but these three regions are extremely divergent in sequence. This model represents the homology domain family of the D2 domain. It occurs just once in many surface proteins but up to twenty times in some pilin subunit proteins. Three of every four members have the typical Gram-positive C-terminal motif, LPXTG, although in many cases this motif may be involved in pilin subunit cross-linking rather than cell wall attachment. Proteins with this domain include fimbrial proteins with lectin-like adhesion functions, and the majority of characterized members are involved in surface adhesion to host structures.	3.06326e-13
NZ_AP012330.1|WP_003833695.1|118984_119899_-|thiazole-synthase	gnl|CDD|234687	PRK00208, thiG, thiazole synthase; Reviewed.	4.41185e-139
NZ_AP012330.1|WP_033524180.1|105125_108143_+|FtsX-like-permease-family-protein	gnl|CDD|223650	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	2.79412e-10
NZ_AP012330.1|WP_004222986.1|102056_103091_+|LacI-family-DNA-binding-transcriptional-regulator	gnl|CDD|224525	COG1609, PurR, Transcriptional regulators [Transcription].	9.46221e-72
NZ_AP012330.1|WP_004222972.1|95099_96449_+|MHS-family-MFS-transporter	gnl|CDD|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.42072e-173
NZ_AP012330.1|WP_004223027.1|119982_120696_-|sulfur-carrier-protein-ThiS-adenylyltransferase-ThiF	gnl|CDD|236320	PRK08644, PRK08644, sulfur carrier protein ThiS adenylyltransferase ThiF.	1.61929e-117
NZ_AP012330.1|WP_034878339.1|96757_97810_+|ketol-acid-reductoisomerase	gnl|CDD|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	0
NZ_AP012330.1|WP_022244745.1|99348_101166_+|sialate-O-acetylesterase	gnl|CDD|377084	pfam03629, SASA, Carbohydrate esterase, sialic acid-specific acetylesterase. The catalytic triad of this esterase enzyme comprises residues Ser127, His403 and Asp391 in UniProtKB:P70665.	5.42892e-08
NZ_AP012330.1|WP_004223011.1|112002_114435_+|VWA-domain-containing-protein	gnl|CDD|238119	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.	7.44571e-17
NZ_AP012330.1|WP_003833700.1|120823_121018_-|sulfur-carrier-protein-ThiS	gnl|CDD|340451	cd00565, Ubl_ThiS, ubiquitin-like (Ubl) domain found in sulfur carrier protein ThiS. ThiS, also termed Thiamine biosynthesis protein (ThiaminS), is a sulfur carrier protein involved in thiamin biosynthesis in prokaryotes. It has the beta-grasp ubiquitin-like (Ubl) fold with low sequence similarity to ubiquitin (Ub), and is activated in an ATP-dependent manner by sulfurtransferases, similar to the activation mechanism of Ub-activating enzyme E1. ThiS has common evolutionary origin with Ub-related protein modifiers in eukaryotes, a beta-grasp fold as Ub, and is closely related to proteins MoaD and Urm1.	5.07795e-21
NZ_AP012330.1|WP_022244795.1|110641_111757_+|class-C-sortase	gnl|CDD|320676	cd05827, Sortase_C, Sortase domain found in class C sortases. Class C sortases are membrane-bound cysteine transpeptidases broadly distributed in Gram-positive bacteria (mainly present in Firmicutes and Actinobacteria). They function as pilin polymerases responsible for the assembly of pili, which are multi-subunit hair-like fibres that extend from the cell surface to promote microbial adhesion and biofilm formation. First, one or more class C sortases form the long thin shaft of the pilus through linking together pilin subunits via isopeptide bonds. The base of the pilus is then anchored to the cell wall by a housekeeping sortase or, in some cases, the class C sortase itself. Depending upon the organism both the number and type of sortase enzymes involved varies, and in some cases, accessory factors appear to be needed. In three-component spaA pilus from Corynebacterium diphtheriae, the prototypical class C sortase (named Cd-SrtA) catalyzes polymerization of the SpaA-type pilus, consisting of the shaft pilin SpaA, tip pilin SpaC and minor pilin SpaB. The pilus shaft is then attached to the cell wall by a housekeeping class E sortase, Cd-SrtF. In the absence of Cd-SrtF, Cd-SrtA attaches the pilus to the cell wall, albeit at a reduced rate. Cd-SrtA can recognize two distinct sorting signals (LPLTG in SpaA and SpaC, and LAFTG in SpaB) and it can employ lysine residues that originate from different proteins (either Lys190 within the pilin motif of SpaA or Lys139 in SpaB). However, Cd-SrtA cannot be able to polymerize the major pilin subunit SpaH, even though it contains LPLTG motif. In two-component pili of prototypical Bacillus cereus, the class C sortase (named Bc-SrtD) cleaves related sorting signals within a major pilin protein BcpA (LPVTG) and a minor tip pilin BcpB (IPNTG), and catalyzes a transpeptidation that joins the threonine residues in each signal to the side-chain of Lys162 in BcpA (located within a pilin motif). Unlike the SpaA pilus in C. diphtheriae, in B. cereus Bc-SrtD is unable to covalently attach the pilus to the cell wall without the help of the housekeeping sortase.	1.95672e-85
NZ_AP012330.1|WP_004222963.1|91856_92714_+|carbohydrate-ABC-transporter-permease	gnl|CDD|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.66477e-70

Protein sequences

>NZ_AP012330.1|WP_033524180.1|105125_108143_+|FtsX-like-permease-family-protein
MAFIKDMVRMWLHAWKRFISIALISLLGVAVLTGIYAGCRDAFLATDRFFDTQGLHDIQVLSTAGLTDDDIAALRKISGVAKVQGERSQTVTVDLNGKKTVTMQEIGTNGIDQPYLQSGRMPEKSGEIAVTRKFIKDSGYKKGDHITVTPQDSASSSVSDSAESDNQTGENGSQMSDSAESDTQDGKRAARVTDSGESDNQAPSFPTELTIVGVVLDPQDLTNPDGYSGTNAFRSSATSDYTFFAPSDGVTGSMYTAVTILVKGTADKDSFSDVYDDTVSEVADRIDGTVRTNRQKARHQELLDAGTKQIDEAKAQTDKQFAAAQQQIDSNRSQLNQQIDQIVNMQAGAAAGSLDETTRETLRETVIAASPQLAEAKAQLDQAQSKLDQQKKDTERTLQSKQNELEDSIPQVRWYVQDRSQIGGFSSLKSDLESIQSLGNAFPIVFLLVAVMMSLTAMARMVEEDRGLIGTYTGLGYGRLAVASRYLLFALFACLIGGGLGLIAGFLGIPAFLLVVLRGLYVMPDVRLAYDWLYGTAGVALFVVGVLAATVYACAQEMRQKPASLMRPKAPRAGSRILLERIKPLWNRMSFLGKVTARNIFRFKSRLIMTVGGVAGCTALIVCGLAINDTVAALGAKQYQDVYQYDLMVVANDDDADAMRQKVASDGRVTSSMDVRVESGDLTGDSGSESIQLVAVPDSERSEFGKMVTLQPVRSSWVDGAADTVSLGDDGVIVSQSAASAMGVKAGGMVTLTNGDDMQAEAHVSAVIRSVIGSDVYVSETYYRQLFDTAASGTSSASSASDSGESDNQNGESGTSNGASSNGQQLVWNAMYAKLKGSGESQAAYAEKLEDDDAVMKAVSCAHMAESFKFDLMGAVVALIVALAGGLALVVLFTLANTNVSEREREMATLKVLGFFDKEVHHYVNREMMVLTMMGVVLGLPLGRFVGGLLTAALNMPALYFEVECTPLSYVIAAGATMAFALLVQLFVNPVLDRIDPISSLKSVE
>NZ_AP012330.1|WP_004222996.1|103403_104873_-|amino-acid-permease
MSDATVAKKPRETDDVPVPPTLRKSLKNRHIQLIALGGAIGTGLFYGSSESIQLAGPAILLAYLIGGLAIFLIVRALSEMAVEDPKAGAFSYYATQYWSKRAGFISGWNYWFNYVLVAMVELAVVGSFVNYWFPNIPKWVSAAVFLVAIAALNLMGVNKFGEFEFWFAIIKIVAVLAMIFGGLYVIIANVPTASGIRASFANWFTVDGGFLPHGLMSRNADGTWTGLLMALVVVMFSFGGTELIGITAGETENPRTTIPKATNGIIWRILVFYICALGVIMAVVPWSTIDGNSSPFVQIFDSVGVHAAAGILNFVCLTAVMSVYNSGLYANSRMLYSLAKQGNAPAYLGRLNKRGVPVGGVITSAIIIAIAVVVVFVWPDFAFNYLMSIATIAAAINWIMIMITEIKFRRVVAAGDGPNDLKGLKGQEALDKLAFKLPFAKVTPYVVIAFMLLVVVLMCFSASYRIAVVAGVIWLVVLFAAYQITQKRA
>NZ_AP012330.1|WP_004222994.1|103121_103388_-|hypothetical-protein
MRPCLKRGARALFDFRLRFQISDFDFQSAIPGLFWGLAPFDLWYLSKQSGNTVAILYGVTLAAIAAIGSLLAFILPLSGRSKCAIAIF
>NZ_AP012330.1|WP_004222986.1|102056_103091_+|LacI-family-DNA-binding-transcriptional-regulator
MPIQKSKVTIFDVAKASGVSSSAVSYALNGKSGVSDVTRDKVLKVAHELGWKPNGAAQALAKAKTQRVGLALGYDPKLLSVESYMMELISGLGAELEKYDYSLLVRMAVGEDAKLSIIDDWIATGNVDAMLLVNVELGDPCVALLEEHEEMPVLAIADASVVGNLPSLSSADADAVRRAVRYLYDLGHRQIARVGGPESLAHSYIRDSAFADVASELGMRYRCLHTDYTPETGREATKRLLAFSEHPTAIIYDNDVMALAGLGVAASQGIKVPEEISIMSWDDSLMCTAAYPNLTAMGRDVVDTGKQAAGLLLKLIGGERVGHLMEGPYELRARASTGPAPAAE
>NZ_AP012330.1|WP_022244745.1|99348_101166_+|sialate-O-acetylesterase
MVTATGPAPGSEMTTSAEPTEDRSTSGVLHVAAIFASHMVLQRNKPIAVFGALDADCAGLEVSAEIRDFDGSVIVQAHAYASKEIKNGFSPWRVMLPAQPEGGPYTLRVTAGNDFIEYYDVLIGEVWLAGGQSNMELELRNSEDAEEALDNCADPLLRFYNVPKTGVINRNAEHAASWQESSPENSGVMSAVAYYFARKLRDELDSDLPIGIIDCYIGGTSISCWTSEDALNSSESGRGYLARYEQAIAGKTQEQFDLEYGEWQSRSDTWNASIAAAREDDPDVTWDTLTQQYGECPWPPPMTPTSQWRPSGAFHAMLERIVPYSLAGFLWYQGEEDEPYCGSYRELLGMMIGEWRALWSESLPFLIVQLPQWIDKKVDEGDGDPMLWPVLREAQWDAAQSIDNVFAICTMDCGEYNNIHPVDKRTPGERLGNCALRQVYGMSRIPVYGPTVLGFRCDEGGRVRLFFRYAHGLHFSGTAPDSFGDEFAKSLPSLVRLPERSGFELAGADGVFHPAYAAIFVDCDIDDLVNAKVNVVDYNATEFGIPINSRSIGTITLATPEVPAPVMMRYAWRSWGPAPLFNDNNLPAHPFKLDLTDHTDSDHAE
>NZ_AP012330.1|WP_004222977.1|98166_99207_+|ketol-acid-reductoisomerase
MAAQIWYENDGDLSVLEGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLRPTSKSVEHAKEQGLEVKSVPEAAAEADIIMILAPDQYQRTIWANDIEPNIKPGAAVAFAHGFNIHYGYIKPSEDHPVFMVAPKGPGHIVRREYANGRGVPVVVAVEQDPRGDAWDITLAYAKALGALRAGAIKTTFTEETETDLFGEQNVLMGGVNKLVEMGFEVLTDAGYQPEIAYFEVCHELKMLVDLMNEGGLNKARWSCSDTAQYGDYTNTCIDEHVRERMQYHLQRIQDGSFAKEFIEDQDAGAPKFKALQEEYGNVRIETVGPKLRAMFSWNNGKDDDADMATFTGKIARG
>NZ_AP012330.1|WP_034878339.1|96757_97810_+|ketol-acid-reductoisomerase
MAATIWYEKDADLSVFDGKKVAILGYGSQGHAHALNLRDSGVDVVVGLRPTSKSVEYAKEQGLEVKPVAEAVAEADVVMILLPDQYQAAVYKKDVEPNLKPGAALAFAHGFNIHYGYIKPSEDHPVFMVAPKGPGHIVRREYAAGRGVPVVVAVEQDPDGKTWPLCLAYAKALGALRAGAIKTTFTEETETDLFGEQDVLMGGINHLCDMGFDVLTEAGYQPEIAYFEVFHELKMLVDLANEGGLNKARWSCSDTAQYGDYTSTVITEETKKRMQYQLKRIQDGSFAKEFMDDQAAGAPKFKELQEEYSHPHLETVGPKLRAMFSWNNQTDADADMAESFNGKIARTQVQ
>NZ_AP012330.1|WP_004222972.1|95099_96449_+|MHS-family-MFS-transporter
MSAVEAAAGKAQAMVRDSVKTVIAASMVGTAIEFYDFYAYGTAAANYFPKVFFGDTTNPTVALLASLLTFAIAFIARPLGSLVFGHFGDRMGRKTTLVVSLLTMGIATFLIGCLPTYSQWGIVAVAALCLCRFVQGIGLGGEWSGAALVATENAPEDKRALYGSFPELGAPIGFFLSNGTYFLLETFNDDDAMLAWGWRVPFLLSAVLVIVGLVVRVQMEETPIFRMAQEQKKVVKSPLTEVFKKSWKEVIQATFLVAVTYTLFYTLATWSLAWGTKTVEQGGGDLGFTNREYLLMLMLAICVFAAFIVISCVNADKFGRKRVIVISSCCLVAFALLFPFLLDPSVVGQRNFAANLLFLCIGFALMGTAFGPIGAFLPELFDANVRYSGSGIGYNLAAIVGAAFVPTIATWLSHHWGVHSVGLYLGVMAVCCLVAVLSCKETKDVDFTK
>NZ_AP012330.1|WP_004222967.1|93045_94647_+|MFS-transporter
MTEDNQHNAGEQQTPMQPQPLPGQVFVRPGIDDRPDYEKTLTEETKAALKRLAVQQNPRVPEASNERPEVQQTLINTEGGSPLTAFAHLDAAVPNLESSFLDLRDPMTAPDGTTPTKPQVHRLTAGFALGALLFTAPMAALNSVLIPQTISRLSGTDRVTDLALLSVVGTLLTFLMNAWISVGSDHSYCPLGRRTPWIIAGTVLTATSVAILSACDFMPLVIVFWLFTLIGHAMVSMPLAAAFGERVPDKFRDRADAWRGVGQAFGQVLGIIAAVSITWAADDSGWDGTTRFAMMVFALCLVVAGVATLLVLPFEGSSSYLPREGVKKGDYFSQYRPPKGAPKFFIAFAARMFAIAATSGIAIYQWYLAQDGLGDVSQVTMFGLSGAAAVMSMMAVAAFVGSLLAALLLGRIARAFKDSRIPAIAACLLFVVAVVLPLTPIDSAMAVALYALFAGFAYVVYDGVSQGLNLATLPDVRSVGRSLAAFSLANTFGSLIGAVVCAIAIAVTGEYLLIFAVAAGCMAVAGVLTLLLK
>NZ_AP012330.1|WP_004222963.1|91856_92714_+|carbohydrate-ABC-transporter-permease
MKGQTSTRTKVLHALMIVVLTILLLLFIAPFILVVINVFKTKADINTAPLALIGKHGFTLENFPRAMDKMNFVTVFGNSAVITISATILTILFSAMCAYVIVRNPSWKFGGMVFALMVASMVIPFQVLMVPLVSVYGGLLDVLNSRITLILMHTGFSVSLAVFMFHGAIKTNIPNELEEAASIDGCSKWRTFWTIVFPLLKPTVATVAIIDAMAFWNDYLLPSLVLGRRELYTIPIATQIFYGTYSNDIGLIMAALLLAMLPILILYLFLQRYIVEGVTSGAVKG
>NZ_AP012330.1|WP_004223004.1|108314_109811_-|cation:proton-antiporter
MTQELVSLTIIMAVTAVSPIVAQLIPGRFIPQTVLLLVTGAALGPYGLGVIEVNDAVKLLSELGMAFLFLLAGYEIDPKRLAGHQGKVGLVTWIITLGLAGLVVTLLPFFAKQGINGIATVIALTTTALGTLMPILKERNLEGTPIGDAIISYGTWGELGPILAMAILLSTRTGWQTMLVLGAFLTICLLCAMLPTKALKTGHRLYRFLTENANTSSQTLMRLTTFLLIFLVTISALFELDAVLGAFAAGFILRYIIPDGSKSLEMKLEGVGYGFLIPVFFVVSGAAINVRAVAGRPALLVAFIVMLMLIRAVPVYVALSLDKRENPLSSHHRVTVALYCTTALPIIVAVTSLAVKVGTMQGDTASTLVAAGAITVFLMPLLGSITYQVADVHPVTAVREIAHTPSDWRTIVHEHAQVRALLHHQDRLKRMAETLDALEKMGTMGHGDAAHSNAGHGDEYRAELVKRARREIDRQLKELGLDPQLTTQLPHNYRYPKN
>NZ_AP012330.1|WP_004223008.1|110105_110567_+|hypothetical-protein
MVDGKFTAKERAYLASLPAVESVSASHIRYADSFRIEVMCRYNAGESPAAIFREAGLDPKLIGYKRIERCIARWKKQEERDRRNSKRVDRDDLLVIRHHDLMRDDAQSSATESQDALSKLAQAQLIINQCDELIAKQALRIDELERVLRKLVG
>NZ_AP012330.1|WP_022244795.1|110641_111757_+|class-C-sortase
MGGRLSLESRFPSFEEAIDVADEMRQRRHARGKTLAMRAIAALLIVAAICIGGFPAMLQYRSARDLSGTSVRSAHTVAGWPYPQADDAFAAAQDYNKRLAESGQPILGEAKDPFADVRGGSRASVSDSGESDNEAGESGPQLSDSGESDNQSGAGTGADAGSADAGSASASSADAEYRSLLDSGGGVMGTIRIPKISVRLPIYHGTSESALASGAGHLYGSSLPVGGKSTHAVLTGHRGLVEAAMFTRLDEMRVGDYFYIEVMGRTLGYQVDRITVIEPNDTSQLKIVPGEDRVTLMTCTPYGVNTHRLLVSATRSAIPDEIPAENDAVKDARAIGAITGIATLVVGVLLVWLRRKPWHIRRHAAWWPKRG
>NZ_AP012330.1|WP_004223011.1|112002_114435_+|VWA-domain-containing-protein
MHMRHAHNEAKPRGSFVQRMVAALAAIAMLGGLGYVTTSSAIAEDDQNPSGDTSTLQPANSKSIAKIEGGDGDQYALHLTASGDSSSSTVTTAVPADIVLVLDKSGSMKNSNRDTNAKNAATALASKLLTAANAALPAEQQVQMAVVTFSDRARTTSQFTTSPGAIGTAVSAWPNGGTNWEDALKTANDLSSGRSGVQKHIVFLSDGNPTFRITSYSGCFKWSGFGQGWESHPEYGTQAECEANNKWLDQSYQWKTDPDGSDGNIHGEGDDDSYGYNYAAALSEANERGNAALYVVKVSADANKMSDLAKEANAVTGKEYDGTSAENLTKAFEQIYNTITTTAKIRAYSITDTLSQWVDPVDFADVANGADITQYVTVTNNGTTVSGYTAVYNVDDNGNRTITVTFNNGNGMIVDKNETIDVSFKVKPSDAAYADYASKQQYPDTGEANTGNESAGKQGYFSNAGAHLNYCVVTSVNDQESECTQQTLDYAKPVVQVRLGQITINKVWSDGASKHASDAVTVQLQRTKTGEAAAQAEKVGDPITLNASNNWTATIGRLQPGYTYSVAETSEDSRYAVSYQYGNAASNATGVDLTKAMVWQSDGNGGNMTATLTNTLKSATLSNVITVQKILEGRDWKAGDSFDFELTADGNAPLPADCAQQAQQSCKVTVAYDADSPDSQHSATFGDITYNAGKADYTYTITEGNGNIAALHYSGAKYQIVVAVTETNGAWTASVKSVTKLLDDNGKNVSESQKIGDPIAFTNTYVAVSALPLTGGTTDRQWLLVGGSIGGLAVLLVGAAGVWNSRKRLV
>NZ_AP012330.1|WP_004223015.1|114584_116120_+|isopeptide-forming-domain-containing-fimbrial-protein
MKMRKLFAGIAAAATLLGGMALGATSAQADGSGTVVKSDVNFTFTAQDAKQLTNRKLDAYKIADYVQYGTGSNATYGVQTAGTVTDNSGIKAALEAAVAGTNKTVPTDGGDLMAWALAEGVLSVDNSADGAWNNSASRKFVESLKTTTDKLGTAEEVDLGAAANGTSATVTLPTGLYLFVDADYSVGTNGAATPSIAILVGSGNVKDGVLNPLTEATVTIKNQTTTVSKTVSAATASAGQTVTYTITSKVPQNTQYYSDYAYTYTDTPSAGQTVNLNSLKVKVANAELKKDTDYTVTGGANGQPFTVAIRSIQTQRAGAEIAVTYNATVTSEEAAGSKAVTNTVVLSDNGAEATDSTTITNGQFSFTKTDAQGNALAGAKFEIEGQNGASTPSTATATSESNGTVTFKGLADGTYKVTETEVPAGFQPNLKAAFTVTITNGKAVKYTGADIWGLAPSTEVSDNYTYKVKNVKNVTQLPLTGAAGTTLFTVVALLVAGAGVTVALKSRQRVR
>NZ_AP012330.1|WP_022244792.1|116445_116952_+|hypothetical-protein
MARGGGAFSDEEIQLLRGLPAVANVTRNRITYADSFKQVCTIRYLTGESPTKIFREAGLPPDLIGYKRIERCVDRWKTSAIKSVTGSGNMSDSEIIAQLVNRYEHAFVMRRNLDSITNRTMEHIPVKAQGDDGIDVGTASIIIKQQARRIDELERANAELRGQIAATA
>NZ_AP012330.1|WP_033524175.1|117309_118857_+|amino-acid-permease
MCGSRGRVVNIMTSENTNSAGSSAAHIKSVESLDQSNEMERGLKNRHVQFIAIGGTIGTGLFLGSGKSIALTGPSIIFVYIGVGLIMFLLMRAIGEMMYSDPSQHTFINFITRYLGRGWGKFAGWTYWIVLILTGMTEITAVSTYFVTFFGTFGIDLNSWKWLIELCFLVALTGINLIAVKVFGEAEFWFSMIKITLIVGLIVTAIVMLVIGFSYPATHIEGVDGTVSGATVSLTNITDGFQLAPNGWMNFFMSFQMVFFAYQLIEFVGVTVSETQNPREVLPKAVNELIVRILIFYVGALIAIMAIVPWRNFHENSDGSFGSPFIMVFKYAGLDWAAALVFFVVITAAASALNSLIYSAGRHLYQLASDSESPAMARLAEVSEHKVPAKAIVASGCMILFSPIINAIPGISGAFVLFASAASAVVIFIYVLTMLAHRKYRQSSDFLPDGFVMPAWQVLDWIAIAFFVLVYVTLFLSADTIGSAIAGLIWLVAFGGYCLLHERFQNRDLKEALPR
>NZ_AP012330.1|WP_003833695.1|118984_119899_-|thiazole-synthase
MSTENTITTAEKDFAAAPNATLDELVGTTTNTALLPEPDAHAYDEIATGDADPLILGGHKFTSRFILGSGRYDLNLIKATIENAGTQIVTMALRRCRTTENNLLDYIPKGITMLPNTSGARNAEEAVRIARLAREVCQTDFVKVEIEHEAKYLLPDNEETIKATKQLAKEGFVVMPYMFPDPIAAKRLEDAGAACVMPLGAMIGSNKGLRARDFIEVIIKNSNVPVIIDAGIGRPSQAAEAMEMGADAVMAYTAIASAGNIPLMARAFKKAIEAGREAYLSGLGKVTEDHAVPSSPTNEADYIG
>NZ_AP012330.1|WP_004223027.1|119982_120696_-|sulfur-carrier-protein-ThiS-adenylyltransferase-ThiF
MTFEPSISQAQIDARQHAFDNQPDPTTLVSREEIRAALLDRHTAATQDKLDAAHVAICGCGGLGSTIAVALTRIGVGHLHLIDFDRVDMTNLNRQQYFLKDLGQYKTEALRSNLRQINPFIDITIDTVKVTDENVPMLFGNEDIICEAFDVPENKTMLVNAVLENLPNKKLVSASGMAGFRSSNLVNTRRVSKNFYFCGDGETAPVPGAGLMAPRVGVVACHEANMITRLILGEEDA
>NZ_AP012330.1|WP_003833700.1|120823_121018_-|sulfur-carrier-protein-ThiS
MIINGKEENIATPITVAELIESKGLRADRVAVELNGEIVPRTQRAQTQLKGTDTLEIVTFVQGG

Crispr_ID: NZ_AP012330_7

• CRISPR_ID: NZ_AP012330_7
• CRISPR_location: 256899-257085
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 3 spacers

Consensus repeat of NZ_AP012330_7

Consensus_repeat	Method
TGATTCTTCCAGTGACTGGAGGGTTTTG	CRISPRCasFinder

spacers of NZ_AP012330_7

>7.1|256927|25|NZ_AP012330|CRISPRCasFinder
CCCGCTGAGATGCAGTTTGGTGGGA
>7.2|256980|25|NZ_AP012330|CRISPRCasFinder
GACGGTGGAGGGGCTTGTATCGGGA
>7.3|257033|25|NZ_AP012330|CRISPRCasFinder
CCCGCTGGGATGCGGTTTGGCGGGT

CRISPR arrays and Neighbor proteins around NZ_AP012330_7

CRISPR arrays

The CRISPR arrays of NZ_AP012330_7

>merge|NZ_AP012330|7|256899-257085|CRISPRCasFinder
TGATTCTTCCAGTGACTGGAGGGTTTTGCCCGCTGAGATGCAGTTTGGTGGGATGATTCTTCCAGTGACTGGAGGTTTTTGGACGGTGGAGGGGCTTGTATCGGGAGGATTCTTCCACCGACTGGAAGTTTTTGCCCGCTGGGATGCGGTTTGGCGGGTGGATTGTTCCAGTGGCTGGGAATTTTGG

>NZ_AP012330|7|7|256899-257085|CRISPRCasFinder
TGATTCTTCCAGTGACTGGAGGGTTTTG	CCCGCTGAGATGCAGTTTGGTGGGA
TGATTCTTCCAGTGACTGGAGGTTTTTG	GACGGTGGAGGGGCTTGTATCGGGA
GGATTCTTCCACCGACTGGAAGTTTTTG	CCCGCTGGGATGCGGTTTGGCGGGT
GGATTGTTCCAGTGGCTGGGAATTTTGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP012330.1|WP_004220219.1|262975_264139_+|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|270267
NZ_AP012330.1|WP_033524193.1|261599_262736_+|D-alanine--D-alanine-ligase	unknown	unknown	gnl|CDD|234993
NZ_AP012330.1|WP_033524190.1|250185_251709_+|metallophosphoesterase	unknown	unknown	gnl|CDD|277329
NZ_AP012330.1|WP_004220231.1|255616_256795_+|diguanylate-cyclase	unknown	unknown	gnl|CDD|239204
NZ_AP012330.1|WP_022244563.1|251829_252651_-|IclR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224332
NZ_AP012330.1|WP_004220245.1|246548_247862_-|DUF805-domain-containing-protein	unknown	unknown	gnl|CDD|377540
NZ_AP012330.1|WP_004220249.1|242664_244089_-|MFS-transporter	unknown	unknown	gnl|CDD|340863
NZ_AP012330.1|WP_022244602.1|267472_268588_+|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl|CDD|376806
NZ_AP012330.1|WP_004220214.1|266160_267342_+|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|226361
NZ_AP012330.1|WP_004220235.1|254484_255174_+|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl|CDD|179314
NZ_AP012330.1|WP_004220218.1|264356_265310_+|ABC-transporter-permease-subunit	unknown	unknown	gnl|CDD|226616
NZ_AP012330.1|WP_033524189.1|248183_249704_+|glutamate--tRNA-ligase	unknown	unknown	gnl|CDD|234953
NZ_AP012330.1|WP_022244603.1|268678_269464_-|mechanosensitive-ion-channel	unknown	unknown	gnl|CDD|366370
NZ_AP012330.1|WP_004220229.1|257218_258544_+|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl|CDD|236486
NZ_AP012330.1|WP_004220236.1|253000_254404_+|3-isopropylmalate-dehydratase-large-subunit	unknown	unknown	gnl|CDD|235490
NZ_AP012330.1|WP_033524191.1|259042_259924_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl|CDD|153251
NZ_AP012330.1|WP_144139737.1|265324_266164_+|ABC-transporter-permease-subunit	unknown	unknown	gnl|CDD|224098
NZ_AP012330.1|WP_033524192.1|260128_261127_+|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl|CDD|234629
NZ_AP012330.1|WP_004220248.1|244538_245198_+|histidine-phosphatase-family-protein	unknown	unknown	gnl|CDD|366010
NZ_AP012330.1|WP_004220246.1|245364_246393_+|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_AP012330.1|WP_004220219.1|262975_264139_+|ABC-transporter-substrate-binding-protein	gnl|CDD|270267	cd13549, PBP2_Fbp_like_3, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. This periplasmic domain (Fbp) has high affinity for ferric iron and serves as the primary receptor for transport. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.22461e-25
NZ_AP012330.1|WP_033524193.1|261599_262736_+|D-alanine--D-alanine-ligase	gnl|CDD|234993	PRK01966, ddl, D-alanine--D-alanine ligase.	2.62255e-168
NZ_AP012330.1|WP_033524190.1|250185_251709_+|metallophosphoesterase	gnl|CDD|277329	cd07383, MPP_Dcr2, Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.29098e-21
NZ_AP012330.1|WP_004220231.1|255616_256795_+|diguanylate-cyclase	gnl|CDD|239204	cd02810, DHOD_DHPD_FMN, Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.	9.53761e-84
NZ_AP012330.1|WP_022244563.1|251829_252651_-|IclR-family-transcriptional-regulator	gnl|CDD|224332	COG1414, IclR, Transcriptional regulator [Transcription].	2.55625e-50
NZ_AP012330.1|WP_004220245.1|246548_247862_-|DUF805-domain-containing-protein	gnl|CDD|377540	pfam05656, DUF805, Protein of unknown function (DUF805). This family consists of several bacterial proteins of unknown function.	3.09729e-25
NZ_AP012330.1|WP_004220249.1|242664_244089_-|MFS-transporter	gnl|CDD|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.65053e-13
NZ_AP012330.1|WP_022244602.1|267472_268588_+|CPBP-family-intramembrane-metalloprotease	gnl|CDD|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	3.5084e-15
NZ_AP012330.1|WP_004220214.1|266160_267342_+|ABC-transporter-ATP-binding-protein	gnl|CDD|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	1.30527e-131
NZ_AP012330.1|WP_004220235.1|254484_255174_+|3-isopropylmalate-dehydratase-small-subunit	gnl|CDD|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	5.09725e-118
NZ_AP012330.1|WP_004220218.1|264356_265310_+|ABC-transporter-permease-subunit	gnl|CDD|226616	COG4132, COG4132, ABC-type uncharacterized transport system, permease component [General function prediction only].	7.28351e-63
NZ_AP012330.1|WP_033524189.1|248183_249704_+|glutamate--tRNA-ligase	gnl|CDD|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_AP012330.1|WP_022244603.1|268678_269464_-|mechanosensitive-ion-channel	gnl|CDD|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	2.05898e-29
NZ_AP012330.1|WP_004220229.1|257218_258544_+|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl|CDD|236486	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated.	0
NZ_AP012330.1|WP_004220236.1|253000_254404_+|3-isopropylmalate-dehydratase-large-subunit	gnl|CDD|235490	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit.	0
NZ_AP012330.1|WP_033524191.1|259042_259924_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl|CDD|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	9.669e-30
NZ_AP012330.1|WP_144139737.1|265324_266164_+|ABC-transporter-permease-subunit	gnl|CDD|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	6.48413e-24
NZ_AP012330.1|WP_033524192.1|260128_261127_+|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase	gnl|CDD|234629	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase.	6.53358e-141
NZ_AP012330.1|WP_004220248.1|244538_245198_+|histidine-phosphatase-family-protein	gnl|CDD|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	1.3235e-28

Protein sequences

>NZ_AP012330.1|WP_004220231.1|255616_256795_+|diguanylate-cyclase
MSQGFAPFYDVNRTYEDNYLQGPFGAFAEVLRADASDSAGSVTSVVAEVASDSSSEVQGVQTIQAAQAQEFLGFRVNLPFGIPAGPLLNERFTTAAFRMGFDLAVYKTVRSRAWGCNAFPNVLAVHPRNADGSLVPGSAELDEGVLADTRYELPISISNSFGVPSRDPDEWQPDMQKAIAAAGDGQLLVPSFQGSRVEGMDREAYIADHVTTAHLVAETGAGLMEMNTSCPNEGHNRLLCHDPHLVGEITEAVKNEIGDRPLIVKLAYIPNDADLEIMVKETAGHGAVQGFSTINTISAKLVDANGNQALPGAGRDRSGVCGNAIRGAGLDMVGRLNAIREKLGLDFAIVGVGGVIRPEDYKAYREAGANAVMSATGAMWNARLAQDIKAAL
>NZ_AP012330.1|WP_004220235.1|254484_255174_+|3-isopropylmalate-dehydratase-small-subunit
MEKLTTLTGVAVPLRRSNVDTDQIIPAVFLKRVQKSGFDDALFYAWRRDPEFVLNQPEYKRGKILVAGPDFGIGSSREHAVWALHDYGFRVVISSRFADIFYGNTAKNGVLAAIMPQESVELLWKLLDEEPGRDMTVSLEDRTVTCGDVTLPFEVNDYTRWRLMNGYDDIDLTLQYEDDIVTYEKMRAEKFPFKPKTLPAKREPEQLIASAREGEYPDWQGPLADRGII
>NZ_AP012330.1|WP_004220236.1|253000_254404_+|3-isopropylmalate-dehydratase-large-subunit
MGTTLAEKVWADHLVRKGSDGAPDLLYIDLMLMHEVTSPQAFEGLRLAGRKPRHLDQLIATEDHNTPTADIDRPNPDKISALQLSTLEKNCKDFGVRLCPLGDADQGVVHAFAPVLGLTQPGMTIVCGDSHTSTHGAFGAMAIGIGTSEVEHVMATQTLSLKPFKTMAVNIEGELPKGVTAKDIILAIIAKIGTGGGQGHVIEYRGEAIKKLSMDARMTICNMSIEAGARAGMIAPDEVTFEYLKGRPHAPEGEMWDKAIEYWKTLKTDDDAVFDKEVTIKAEDLEPYVTWGTNPGQGIKISGVVPDPASFNDETERTAAERAIAYMGLTPGMRIKDIAVDTVFIGSCTNGRLEDLRVAASIMKGHHKAENIHRVLVVPASSRVRLQAEKEGLDKIFKDFGAEWRNAGCSMCLGMNPDKMVARERSISTSNRNFEGRQGKGSRTHLASPAVAAATAIRGTISSPADL
>NZ_AP012330.1|WP_022244563.1|251829_252651_-|IclR-family-transcriptional-regulator
MTSSNTSTTMPESQSDETELPAETHHTTSSQSNEIHSGVGVLDKTVKILDALESGPATLGQLVSSTGLARPTAHRLAIALERHRFVLRDQHGRFVLGSRFAELAAAAGEDRLLTAAAPILQTLLDRTGESAQIYRRQGDMRVCIAAVERASGLRDSIPVGAMLSMEAGSAAQILLAWEDSERLHQGLRHAKFTAAKLTAVRKRGWAESVNERDEGVCSISAPIRNASGQVIAAISISGPDGRMGSNPGRRYAPLVMAAGKYLTDALIKASSGR
>NZ_AP012330.1|WP_033524190.1|250185_251709_+|metallophosphoesterase
MTELQNAAKAAATRPRIQPAEEGDDRPLSVSARLGRLQFHQSGKFRVLQLADIQDGPKVSKDTVKLIEASLDATRPDIVIFTGNQIAGYDPAYAQTTRKRRWSAAAGISSKTASSKSSEASERFEAALERTCASVRATVEQLVRPLADRGIPWAVTFGNHDFQCGLSNAEIESICREFPGCVNPEPTGGESGLGGANSANSVGSMDSAEDAGFVQLRAESYLPNQRVFACEPGTFALPVADVDHTMSVLGLVLLDSGDYARSGGYGSPSAEALRFLAEVPEMMATQSQKQAGSHETAQSQEKAVPCMVFQHFPVQQYYQLLKPTAANAARAIEGYRNFAGKHYVLDEEKTLPGSYLGEGVSCPDADSGEFAILEQHDYFAISAGHDHRNAFVGTVPVSREMASADAQTAASPGKVGGLTMIASPTSGFGSYGPVPQKRAARLIEFDIRHPYEPRTQLLEYGELVGKPSAGKAYAYGMTSESKPESEGVDLLHRPTWWSKLLTWLRKK
>NZ_AP012330.1|WP_033524189.1|248183_249704_+|glutamate--tRNA-ligase
MTEAENTKPELPEHVRVRFCPSPTGIPHVGMVRTALFNWAEARHTKGTFVFRIEDTDAQRDSEESYNQIIEALNWLGIDWDEGINVGGPDGPYRQSERGDIYKDVAAKLLEAGYAYESFSTPEEIEARNVAAGRPKAFGYDGYDRDLTEEQKAAFRAEGRKPALRIRMPDEDVAFDDLIRGRIEFKAGSVPDYVIVRPNGDPLYTLTNPVDDAMMNINVVLRGEDLLSSTPRQIVLYRYLIELGVAKEMPLFGHMPYVMGQGNKKLSKRDPESNLFLHRDNGFIREGLLNYLALLGWSIAADRDVFSMEEMIEKFDVRDVKANPARFDLDKAISINAEHIRMLEPQDFLNRAVPYLNRDGVVSADSWDALTDREREVLSASVELVQPRVRLLGEVAGMVGSLLSTEGYIEPDDDAKKQLKDSAPAVLDAAIAALSDVAEDDWKTDFLHETLNKSLIEDGGYKPRLAFGPVRVAMSGRRVSPPLFESMEIVGKEITVARLQGLREHL
>NZ_AP012330.1|WP_004220245.1|246548_247862_-|DUF805-domain-containing-protein
MTDPNQYNPQNPQQAQQYGGYGSYGQNDYGQQAPQYGAPQYSAPQYGNAAGYNQQQPQYGAPQPQPQGSGSFFALTAPLDQPAYNCTIGEAFIRFWKKYATFKGRASRGEFWWWVLCTFIIQIAFAVIFAVLGAIIDSNTANGMRSFVNTIWALATIVPSLALSVRRLHDTNKAGTTLVILYAIDFIGGVLLSVGLVMTGLGAISVIGGGSSSTGVAGILLLIIGFIACLATSIVLIVLMAKKTDPAGARFDDPAAGNGYAPAPGMPPTATAQYAPNGTPAPVADPYAAAVPTPTADPYTAAAPAPAMPAPTPAMPTADPYGAPTPAPAATNTPYGNPYGAPYGTPTDQYAAPAMPAAPAAQYTPAAPATPHAAPAPEAPSMPSMPPLPTVPEQSTQLDQTQFDRPTFGNDSQGQTPYGSDDSDDSDDPTAYGNIQH
>NZ_AP012330.1|WP_004220246.1|245364_246393_+|hypothetical-protein
MAFTINNGALYQLFDRPHMKIAIESCVGVVELWPLQTVQEMENDAKYTEDLQVRFSCTMARAMLRLSHGINPSVAEAVYEGMDEIPGCDPEIVQALTRANQAYDVMRNYSETNNADLFFEAADILGIFIDAHVETEVRNILQKIVEYIRQSVSLGFDGGALEDVNYCYAFTTTPRTLTGRFLAALAVGDGLMNLMCEGIDDVDEQTVRVLPVMLYINELCEQMAVPPIYVGDVTLSRMVALRNAVREAGRATPLEENSFCDNTFTITADNVIPCAGMEWDHHAECLRWDPKRAEQEAKDEDERKSKEALAEKFNLMTDAMKSMSYMDDSDDSGDSGEGADAA
>NZ_AP012330.1|WP_004220248.1|244538_245198_+|histidine-phosphatase-family-protein
MPATTIHFVRHGKVENPGHLLYERLPGFHLSEVGVRMAQATAHYIAVNPRLNTVSAIYSSPLERTRETAGEILTALNEVRETRGEEPLKLTTDERIIEARNEFRGTRIGYGEGALWKNGNWKLVRNLWKPSWGESYQSIAHRVQAFALEKVGEHPGEQIIVVSHESPIWSYRHMLETGHPEHNMLLRHTALASITSITYDCDTRKVLSIAYVDPAADVK
>NZ_AP012330.1|WP_004220249.1|242664_244089_-|MFS-transporter
MTNSVLAGAKSIGQHLFGGYAELLRIPHTARFSVGSVIACMPFPMVGMTITISVQHYYGNYSLAGALTAVQAIALAVASPVLGKLVDKFGQRQVSIPTIIVWMIAATALVSCITARVPSWILFCIVPFMAAIPPWGAMSRQRWTTLLKGDTEKTNRALSLSGVFDECMWVIGNPLASTLAVISGLLAFSFTGVCVVVGALMFLTELSTEPKSQTQLAREAGMTRKEYREREAARSKALQAEAAIEYARDRARSEGKTAAEVQAAMDQAAADVNAGRKESIWGPGLIAVCVTWFGLGAFQSAASISIVAFATEANMKQYTGFVFACFSFSSLIGALVYGAKNWTIPLWKRFYFCLAVVDLGIGSFMFAKHLWVIMIIYLFIGVCQAPTWVNGNQLMLHLVPPTRFTEGMAWMGAMNSIGGSVGSAIAGQFIDRMGSHGGFIVVTALALTSLAIALFGFKQIKDSTEQPMLTTVSV
>NZ_AP012330.1|WP_004220229.1|257218_258544_+|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MSDNNNDILHVEGGKPLNGTIKVRGAKNFVSKAMVAALLAPGTSVLKNVPEIRDVHVVSDLLRLHGVDVTVDGDHGVVTIDATNVQLADVADVDTLSGSSRIPILFSGPLLHRLGEAFIPALGGCNIGGRPIDFHLETLRKLGANVDKEHKDGIHITAPNGLHGAKIHLPYPSVGATEQTLLAAVLAEGKTELSGAATEPEIMDLVCVLQKMGAIISVDVDRTFRIEGVKELKGYTHTSLTDRIEAASWASAALATHGDIFVKGATQPEMMTFLNVFRKIGGEFDITDNGIRFWHPGGDLKPVAIETDVHPGFMTDWQQPLVVALTQAKGLSIVHETVYENRFGFTKPLVQMGATIQLYRECLGSLPCRFQQRNYKHSAVIFGPTPLTGRDIDVPDLRGGFSHLIAALAAKGPSNVQGISLIDRGYADFRGKLEALGADFD
>NZ_AP012330.1|WP_033524191.1|259042_259924_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MASKGKPSPRSAVKPLSDEQVAKLAQRHHLVDPTHDFPCGPRKANEAEIAAQNPKATHRLLTGCDIVFRNRTKLKAWGIEHVPETGPFITAATHVTMFDVFVPMISMFHQGRRPRYMAKAEMASWPLIGKWFQLVGMQPVQRRSGKAKAIEETSVEILTSGRPLTVWPEGTVTRDPQKWPMSMKNGVGMIALEASRRLGYQIPLYCAVTWGAASINHWWPWPRKNVVMCYDEALDYADLLADCDSWGEEVPEDLANELTRRIRVRMTEVMAEIRGEQAPDGYWDYRTMSRVKD
>NZ_AP012330.1|WP_033524192.1|260128_261127_+|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase
MTNVTVLGAGAWGTAFGQVLADAGNNVTMWAIEPEIVEGIRDHHHNGVRLPSVKVLPSNMTATGDRAEAVANADIVIVAIAAQFARVALVEFKDLIPETALVASLMKGIERTTGKRMDEVVMETLDLPADRFAAISGPNLSKQIADREPAATVVACENLDNARKIAAACTTDYFRAFVTRDVIGLEMCGSLKNVVALAVGMARGAGYGENTAAMIETRGLAELTALGEAAGADPKTFAGLAGVGDLIATCGSPLSRNYTFGSNLGKGLSVEEATKVSNGVAEGVPTTDAVVALGKQYGVPTPLATAMSHVLSDGISCAQMLSELFGEGISEE
>NZ_AP012330.1|WP_033524193.1|261599_262736_+|D-alanine--D-alanine-ligase
MAKQRIVVMYGGKADEHSISCISAAGVLRALDTDKFEAIEVGITKNGEWIVGGEDPRKWNMSEGLPMVEKTDSSKDVVLDVALGQDGFFAREDDGTLTSLGHVDAVLPVLHGPYGEDGTIQGLFEMMNVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITLDVRDYDAASEFAAEADEMLAAVQQAGLQYPLFVKPSRAGSSFGVTKVEHEGDAAELAAAVFEASHHDWRVLVEQGIDAREIECAVLCPKAGEAPQASWPGEIVLDKRAEGDDQFYDFDSKYVNSDASHVEVPASLPEETLNRVRETAKKAFIAVDGAGLSRVDTFVTADGEVMVNEINTMPGFTPISMYPKAWEATGVSYTDLITTLIEGVLR
>NZ_AP012330.1|WP_004220219.1|262975_264139_+|ABC-transporter-substrate-binding-protein
MISLRKLAAGSLAAVLAFSMAACGSDSTDSSADSTSGKAVKVDEKSAKATSLADFGTMDDLVAAAEKEGQLNVIALPHNWSNYGEVINGFKKKYPNIKINELNPNASSKEEVDAAKTNKGTDAAPDVFDLGLAVASTSTDNFASYKVQAWDKIPDSVKNADGKYYADYTGIMSIGWNADKYGDINSLDDLMDPKFAGTVALNGKPAEAGAAFNGYLMINQLAGGDINDLQPGLDYFKKLKDAGNLTTVDVTDGTIDSGQTGVVMDWSYNQASYQKSLKEKGVNWKFKTFKNAQVVSYYNQAINVDAPHPAAARLWEEYLYTADAQNEWFKGGANPVLLDSMKEDGTVDQDTLKTAITIEGDPVTYTNDDSTRITEWLQNNWDKTIGN
>NZ_AP012330.1|WP_004220218.1|264356_265310_+|ABC-transporter-permease-subunit
MTAAITPKAGVIGGRNAREARGTRGNGPSATSDFATHRREIGTFVVTIPFFAYTACFLLAPTVIVIVGAFRNVDGGFTLNNFSKLFEANTIAAFATSILVSVISALIGAVVGAVASYALVIGSKPNGLLRRMVSAISSVLAQFGGVMLAFAFIATIGINGVGTMLIRQLTGLTVNPNWLSSLPGLITVYCYFQIPLMIIIFLPAVDSIRPQWREACESLGGNTFQYWTRVAGPILVPRFISALLLLFASAFSAYATAAALFSQRSILVPLMIQGAMRNEMDPNQQGFAQVLAFAMIIVVALVMMLSHAVEKKAGQWQ
>NZ_AP012330.1|WP_144139737.1|265324_266164_+|ABC-transporter-permease-subunit
MPPQLRAARVRKQRVIKAIILTFTLLFLFVPLVSMFVFTIRHPLSGKWSLDPWIAILTGDGSALGADLSTLWSGLGSSMGLCVVTVVIMLLLMVPTMVIVHIRSKQLERAIEWVATLPLTIPAIVLVVGLGPIYRWLSADVLSTNPIWLCFAYVILVMPFAFRALAVGLNSIDVKTLCEASRSLGASWPRVFFRVLIPNLWQSILSASFISIAVVLGEYTVASLLGRMNLQVALYQLGQSNSQISTAMSLLALLFGVILLVALDLISDALRKSKESNES
>NZ_AP012330.1|WP_004220214.1|266160_267342_+|ABC-transporter-ATP-binding-protein
MTLADQKATIARTSEAFVNANPSAETVTRAAREVLNDSAERGGGVQMLNVDKIYPGATNKALDNFNLEINPGEMVVLLGGSGCGKSTALRSLAGLEDIQAGRILVGGQDVTGVPVNKRNMAMVFQAYSLFPHMTALQNVEFGLEIRGMGKTERRKQAMEKLELVGLADQAGKYTQQMSGGQQQRVALARALAVNPRVLLLDEPLSALDAKVRVQLRDEIRRIQLEAGTTTVFVTHDQEEALTVADRIGVMNHGCIEQIADPQTLYRRPGSEYVATFIGLTNRLPGITNGEEAVVFGQRVPLLEASKRDASTVLVRPENLVITLAANDGNMVGEHGRVDMVHFLGALARVDLTVAAGVGHLPVTVQLPANELPAGLTVGSEVVVAPRPIAALAV
>NZ_AP012330.1|WP_022244602.1|267472_268588_+|CPBP-family-intramembrane-metalloprotease
MTFPQYPQYPQRPQQPHTQQNPQQPSQYQQQPQYPQPQANPYELWLRRVKSVFSRIGAGMCLMVVIWYALATVLSGMLYQVLHTTNLPNWAVYVASDTPLYLVAMPLAVLIMGKSSVIETRKFDMKPGQFFKLLVMCFPLMYVGSLIGNMLASLLSGGKASNSVSDLAMQFDVWNVVFLVILGPLFEEWIFRKELISRTRKYGEKTAIVFSALFFALVHMNLFQFFYAFALGLMFGYVYVRTSKLRYSVAMHMIVNFMGGVVAPWVVTNIDIDSLMNVLTSAENGDGTAMMQWMGQNATGMMIFGIYMLLYYGLIIAGIVLLIRNRKNFEFYTAPEELPRGVRTSTAILNVGVVTYIVVTVIITSINLMMQ
>NZ_AP012330.1|WP_022244603.1|268678_269464_-|mechanosensitive-ion-channel
MEPIGIVVDWLKTNSGKIILLIVVALLAAVIDKALTRIVSKVLDRSQVPNASIFINILRAVVWTLAVGTVLQPVFGINPTTIFTALGIGGLAVSLGMKDTIANIIGGFGLMLGRVIQPGDLVNVAGTDGVVEDINWRQTVVRERNGNIKIIPNSILNTASLEKLNPSNEMLVRVPFTAKAGTDIDEMTRQVVQAVQRDTADLADPRFPPKVRLTGYSPYGINVEVCAYAKPESLLPDMINAVARSIANADFLENRAINKES

Crispr_ID: NZ_AP012330_8

• CRISPR_ID: NZ_AP012330_8
• CRISPR_location: 1624514-1626558
• CRISPR_type: TypeI
• Repeat_type: NA
• Spacer_info: 30 spacers
• Cas_protein_info: cas2,cas1,cas4,cas7,cas8c,cas5

Consensus repeat of NZ_AP012330_8

Consensus_repeat	Method
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	PILER-CR
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	CRISPRCasFinder
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	CRT

spacers of NZ_AP012330_8

>8.1|1624547|34|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT
TGATACGACGCTCGAAAATCATCTTAATCGTATC
>8.2|1624614|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT
CCCTTGTACGGCGCGAACGCACTGCTCCCAGCT
>8.3|1624680|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT
GGGGATGCGGTCGAGGATCGGGCTGACCTGCGT
>8.4|1624746|34|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT
ATATCCGGCGTCTGCACGGTGTGAACAAGTGTAT
>8.5|1624813|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT
CGGTCATGACGTCATACTCCCCATTATTTTTTA
>8.6|1624879|34|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT
CGCCGCCCTGCTTGGCGATTGCCACGTCGGTCAG
>8.7|1624946|35|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT
ACGACGACAATCAGGTTTTGCGCTTGGGGATTATT
>8.8|1625014|35|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT
TTCCATGTAAGCGTTACCCAACTGGATATCGTGTT
>8.9|1625082|36|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT
TTATCCGATTTTCGACGAAAACTATAGAGCGAGCCT
>8.10|1625151|36|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT
CGGCGCGTACGGGGCGCAATGCTGGGATTTATGGGC
>8.11|1625220|34|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT
CAAAATCATCACGACAAAAACGCAGATCTGGAAT
>8.12|1625287|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT
GAGACTGATTCCAGCTGACGTGCTCGAAGCCAT
>8.13|1625353|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT
TCATGTCAAAGGGCTCGGCGTTAATCCCGATGA
>8.14|1625419|34|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT
AGAACCGTCTGGGCACGTCGAACCGGAACGCAAT
>8.15|1625486|34|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT
CAACCTCGCGCCGGAAAATCAACCTCGGGTGGAA
>8.16|1625553|34|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT
AGAACCGTCTGGGCACGTCGAACCGGAACGCAAT
>8.17|1625620|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT
CAGTTTCAGCAACCTCGACATCGGCAAATACCT
>8.18|1625686|34|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT
GCAACGCCTTCCACGATGCGATCACCTCGGGTGT
>8.19|1625753|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT
GTATCCGCCGGAATTGTTGACCGTCACGCGACT
>8.20|1625819|36|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT
GATAAGTTCATCCAGCAAAAAGCGCAGGTGACTAAC
>8.21|1625888|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT
GTCGGCGCTGAGCGGGTCGCCGTCCTGCATGAG
>8.22|1625954|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT
ATGGCGTTCTGGTAGTCGCCTTGCGCTGCGTAT
>8.23|1626020|35|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT
TTAATGATTTGATGACTAAGAACAATGTTCTGACG
>8.24|1626088|34|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT
TGTTGGCCGTGTCCGTAATAGCGGCATGCGGAAT
>8.25|1626155|35|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT
CGCCTCGAACGCTGATACCCCTCGCTATTATCTCG
>8.26|1626223|34|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT
AATTTGTTGTCGTCCCTTGTGATTGCGAAATACG
>8.27|1626290|34|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT
TGGATGCCATACGCATTTCCTCACGGAAAATGTT
>8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT
CTTGTCGGCCCAGAGGATGGCGCTCGCGAGCAG
>8.29|1626423|36|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT
GCCGCGATGCCATCTCACGGTCAAGTTTCGTGACAT
>8.30|1626492|34|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT
CACCAACATCCTACCAGTATGGGGGTACGAGGGC

CRISPR arrays and Neighbor proteins around NZ_AP012330_8

CRISPR arrays

The CRISPR arrays of NZ_AP012330_8

>merge|NZ_AP012330|8|1624514-1626558|PILER-CR,CRISPRCasFinder,CRT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGACTGATACGACGCTCGAAAATCATCTTAATCGTATCATTTCAATCCACGCTCTCCATGAGGAGAACGACCCCTTGTACGGCGCGAACGCACTGCTCCCAGCTATTTCAATCCACGCTCTCCATGAGGAGAACGACGGGGATGCGGTCGAGGATCGGGCTGACCTGCGTATTTCAATCCACGCTCTCCATGAGGAGAGCGACATATCCGGCGTCTGCACGGTGTGAACAAGTGTATATTTCAATCCACGCTCTCCATGAGGAGAGCGACCGGTCATGACGTCATACTCCCCATTATTTTTTAATTTCAATCCACGCTCTCCATGAGGAGAGCGACCGCCGCCCTGCTTGGCGATTGCCACGTCGGTCAGATTTCAATCCACGCTCTCCATGAGGAGAGCGACACGACGACAATCAGGTTTTGCGCTTGGGGATTATTATTTCAATCCACGCTCTCCATGAGGAGAGCGACTTCCATGTAAGCGTTACCCAACTGGATATCGTGTTATTTCAATCCACGCTCTCCATGAGGAGAGCGACTTATCCGATTTTCGACGAAAACTATAGAGCGAGCCTATTTCAATCCACGCTCTCCATGAGGAGAGCGACCGGCGCGTACGGGGCGCAATGCTGGGATTTATGGGCATTTCAATCCACGCTCTCCATGAGGAGAGCGACCAAAATCATCACGACAAAAACGCAGATCTGGAATATTTCAATCCACGCTCTCCATGAGGAGAGCGACGAGACTGATTCCAGCTGACGTGCTCGAAGCCATATTTCAATCCACGCTCTCCATGAGGAGAGCGACTCATGTCAAAGGGCTCGGCGTTAATCCCGATGAATTTCAATCCACGCTCTCCATGAGGAGAGCGACAGAACCGTCTGGGCACGTCGAACCGGAACGCAATATTTCAATCCACGCTCTCCATGAGGAGAGCGACCAACCTCGCGCCGGAAAATCAACCTCGGGTGGAAATTTCAATCCACGCTCTCCATGAGGAGAGCGACAGAACCGTCTGGGCACGTCGAACCGGAACGCAATATTTCAATCCACGCTCTCCATGAGGAGAGCGACCAGTTTCAGCAACCTCGACATCGGCAAATACCTATTTCAATCCACGCTCTCCATGAGGAGAGCGACGCAACGCCTTCCACGATGCGATCACCTCGGGTGTATTTCAATCCACGCTCTCCATGAGGAGAGCGACGTATCCGCCGGAATTGTTGACCGTCACGCGACTATTTCAATCCACGCTCTCCATGAGGAGAGCGACGATAAGTTCATCCAGCAAAAAGCGCAGGTGACTAACATTTCAATCCACGCTCTCCATGAGGAGAGCGACGTCGGCGCTGAGCGGGTCGCCGTCCTGCATGAGATTTCAATCCACGCTCTCCATGAGGAGAGCGACATGGCGTTCTGGTAGTCGCCTTGCGCTGCGTATATTTCAATCCACGCTCTCCATGAGGAGAGCGACTTAATGATTTGATGACTAAGAACAATGTTCTGACGATTTCAATCCACGCTCTCCATGAGGAGAGCGACTGTTGGCCGTGTCCGTAATAGCGGCATGCGGAATATTTCAATCCACGCTCTCCATGAGGAGAGCGACCGCCTCGAACGCTGATACCCCTCGCTATTATCTCGATTTCAATCCACGCTCTCCATGAGGAGAGCGACAATTTGTTGTCGTCCCTTGTGATTGCGAAATACGATTTCAATCCACGCTCTCCATGAGGAGAGCGACTGGATGCCATACGCATTTCCTCACGGAAAATGTTATTTCAATCCACGCTCTCCATGAGGAGAGCGACCTTGTCGGCCCAGAGGATGGCGCTCGCGAGCAGATTTCAATCCACGCTCTCCATGAGGAGAGCGACGCCGCGATGCCATCTCACGGTCAAGTTTCGTGACATATTTCAATCCACGCTCTCCATGAGGAGAGCGACCACCAACATCCTACCAGTATGGGGGTACGAGGGCATTTCAATCCACGCTCTCCATGAGGAGAGCGAC

>NZ_AP012330|8|1|1624514-1626558|PILER-CR
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	TGATACGACGCTCGAAAATCATCTTAATCGTATC
ATTTCAATCCACGCTCTCCATGAGGAGAACGAC	CCCTTGTACGGCGCGAACGCACTGCTCCCAGCT
ATTTCAATCCACGCTCTCCATGAGGAGAACGAC	GGGGATGCGGTCGAGGATCGGGCTGACCTGCGT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	ATATCCGGCGTCTGCACGGTGTGAACAAGTGTAT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	CGGTCATGACGTCATACTCCCCATTATTTTTTA
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	CGCCGCCCTGCTTGGCGATTGCCACGTCGGTCAG
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	ACGACGACAATCAGGTTTTGCGCTTGGGGATTATT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	TTCCATGTAAGCGTTACCCAACTGGATATCGTGTT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	TTATCCGATTTTCGACGAAAACTATAGAGCGAGCCT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	CGGCGCGTACGGGGCGCAATGCTGGGATTTATGGGC
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	CAAAATCATCACGACAAAAACGCAGATCTGGAAT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	GAGACTGATTCCAGCTGACGTGCTCGAAGCCAT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	TCATGTCAAAGGGCTCGGCGTTAATCCCGATGA
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	AGAACCGTCTGGGCACGTCGAACCGGAACGCAAT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	CAACCTCGCGCCGGAAAATCAACCTCGGGTGGAA
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	AGAACCGTCTGGGCACGTCGAACCGGAACGCAAT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	CAGTTTCAGCAACCTCGACATCGGCAAATACCT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	GCAACGCCTTCCACGATGCGATCACCTCGGGTGT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	GTATCCGCCGGAATTGTTGACCGTCACGCGACT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	GATAAGTTCATCCAGCAAAAAGCGCAGGTGACTAAC
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	GTCGGCGCTGAGCGGGTCGCCGTCCTGCATGAG
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	ATGGCGTTCTGGTAGTCGCCTTGCGCTGCGTAT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	TTAATGATTTGATGACTAAGAACAATGTTCTGACG
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	TGTTGGCCGTGTCCGTAATAGCGGCATGCGGAAT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	CGCCTCGAACGCTGATACCCCTCGCTATTATCTCG
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	AATTTGTTGTCGTCCCTTGTGATTGCGAAATACG
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	TGGATGCCATACGCATTTCCTCACGGAAAATGTT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	CTTGTCGGCCCAGAGGATGGCGCTCGCGAGCAG
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	GCCGCGATGCCATCTCACGGTCAAGTTTCGTGACAT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	CACCAACATCCTACCAGTATGGGGGTACGAGGGC
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC

>NZ_AP012330|8|8|1624514-1626558|CRISPRCasFinder
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	TGATACGACGCTCGAAAATCATCTTAATCGTATC
ATTTCAATCCACGCTCTCCATGAGGAGAACGAC	CCCTTGTACGGCGCGAACGCACTGCTCCCAGCT
ATTTCAATCCACGCTCTCCATGAGGAGAACGAC	GGGGATGCGGTCGAGGATCGGGCTGACCTGCGT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	ATATCCGGCGTCTGCACGGTGTGAACAAGTGTAT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	CGGTCATGACGTCATACTCCCCATTATTTTTTA
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	CGCCGCCCTGCTTGGCGATTGCCACGTCGGTCAG
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	ACGACGACAATCAGGTTTTGCGCTTGGGGATTATT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	TTCCATGTAAGCGTTACCCAACTGGATATCGTGTT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	TTATCCGATTTTCGACGAAAACTATAGAGCGAGCCT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	CGGCGCGTACGGGGCGCAATGCTGGGATTTATGGGC
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	CAAAATCATCACGACAAAAACGCAGATCTGGAAT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	GAGACTGATTCCAGCTGACGTGCTCGAAGCCAT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	TCATGTCAAAGGGCTCGGCGTTAATCCCGATGA
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	AGAACCGTCTGGGCACGTCGAACCGGAACGCAAT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	CAACCTCGCGCCGGAAAATCAACCTCGGGTGGAA
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	AGAACCGTCTGGGCACGTCGAACCGGAACGCAAT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	CAGTTTCAGCAACCTCGACATCGGCAAATACCT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	GCAACGCCTTCCACGATGCGATCACCTCGGGTGT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	GTATCCGCCGGAATTGTTGACCGTCACGCGACT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	GATAAGTTCATCCAGCAAAAAGCGCAGGTGACTAAC
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	GTCGGCGCTGAGCGGGTCGCCGTCCTGCATGAG
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	ATGGCGTTCTGGTAGTCGCCTTGCGCTGCGTAT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	TTAATGATTTGATGACTAAGAACAATGTTCTGACG
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	TGTTGGCCGTGTCCGTAATAGCGGCATGCGGAAT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	CGCCTCGAACGCTGATACCCCTCGCTATTATCTCG
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	AATTTGTTGTCGTCCCTTGTGATTGCGAAATACG
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	TGGATGCCATACGCATTTCCTCACGGAAAATGTT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	CTTGTCGGCCCAGAGGATGGCGCTCGCGAGCAG
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	GCCGCGATGCCATCTCACGGTCAAGTTTCGTGACAT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	CACCAACATCCTACCAGTATGGGGGTACGAGGGC
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC

>NZ_AP012330|8|1|1624514-1626558|CRT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	TGATACGACGCTCGAAAATCATCTTAATCGTATC
ATTTCAATCCACGCTCTCCATGAGGAGAACGAC	CCCTTGTACGGCGCGAACGCACTGCTCCCAGCT
ATTTCAATCCACGCTCTCCATGAGGAGAACGAC	GGGGATGCGGTCGAGGATCGGGCTGACCTGCGT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	ATATCCGGCGTCTGCACGGTGTGAACAAGTGTAT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	CGGTCATGACGTCATACTCCCCATTATTTTTTA
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	CGCCGCCCTGCTTGGCGATTGCCACGTCGGTCAG
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	ACGACGACAATCAGGTTTTGCGCTTGGGGATTATT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	TTCCATGTAAGCGTTACCCAACTGGATATCGTGTT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	TTATCCGATTTTCGACGAAAACTATAGAGCGAGCCT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	CGGCGCGTACGGGGCGCAATGCTGGGATTTATGGGC
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	CAAAATCATCACGACAAAAACGCAGATCTGGAAT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	GAGACTGATTCCAGCTGACGTGCTCGAAGCCAT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	TCATGTCAAAGGGCTCGGCGTTAATCCCGATGA
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	AGAACCGTCTGGGCACGTCGAACCGGAACGCAAT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	CAACCTCGCGCCGGAAAATCAACCTCGGGTGGAA
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	AGAACCGTCTGGGCACGTCGAACCGGAACGCAAT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	CAGTTTCAGCAACCTCGACATCGGCAAATACCT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	GCAACGCCTTCCACGATGCGATCACCTCGGGTGT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	GTATCCGCCGGAATTGTTGACCGTCACGCGACT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	GATAAGTTCATCCAGCAAAAAGCGCAGGTGACTAAC
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	GTCGGCGCTGAGCGGGTCGCCGTCCTGCATGAG
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	ATGGCGTTCTGGTAGTCGCCTTGCGCTGCGTAT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	TTAATGATTTGATGACTAAGAACAATGTTCTGACG
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	TGTTGGCCGTGTCCGTAATAGCGGCATGCGGAAT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	CGCCTCGAACGCTGATACCCCTCGCTATTATCTCG
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	AATTTGTTGTCGTCCCTTGTGATTGCGAAATACG
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	TGGATGCCATACGCATTTCCTCACGGAAAATGTT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	CTTGTCGGCCCAGAGGATGGCGCTCGCGAGCAG
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	GCCGCGATGCCATCTCACGGTCAAGTTTCGTGACAT
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	CACCAACATCCTACCAGTATGGGGGTACGAGGGC
ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP012330.1|WP_152548814.1|1642450_1642588_+|integrase	unknown	unknown	unknown
NZ_AP012330.1|WP_004220812.1|1629043_1629889_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl|CDD|187820
NZ_AP012330.1|WP_004220832.1|1641252_1642263_-|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl|CDD|380486
NZ_AP012330.1|WP_004220827.1|1635769_1639084_-|mupirocin-resistant-isoleucine--tRNA-ligase	unknown	unknown	gnl|CDD|235681
NZ_AP012330.1|WP_004220790.1|1621154_1622381_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl|CDD|224090
NZ_AP012330.1|WP_004220816.1|1631829_1632537_-|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl|CDD|187782
NZ_AP012330.1|WP_047749757.1|1619997_1620954_+|LysR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|223656
NZ_AP012330.1|WP_004220783.1|1616200_1617850_+|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|173853
NZ_AP012330.1|WP_022245330.1|1617980_1618919_-|isoaspartyl-peptidase/L-asparaginase	unknown	unknown	gnl|CDD|366471
NZ_AP012330.1|WP_004220809.1|1628332_1629010_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl|CDD|273040
NZ_AP012330.1|WP_004220815.1|1629948_1631826_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl|CDD|378245
NZ_AP012330.1|WP_004220779.1|1614034_1614934_-|diaminopimelate-epimerase	unknown	unknown	gnl|CDD|234768
NZ_AP012330.1|WP_004220828.1|1639485_1640934_-|MFS-transporter	unknown	unknown	gnl|CDD|273270
NZ_AP012330.1|WP_004220777.1|1612233_1613160_-|PHP-domain-containing-protein	unknown	unknown	gnl|CDD|223686
NZ_AP012330.1|WP_022245329.1|1615032_1615809_+|glutamate-racemase	unknown	unknown	gnl|CDD|234851
NZ_AP012330.1|WP_004220806.1|1627301_1628333_-|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl|CDD|188360
NZ_AP012330.1|WP_033524077.1|1622517_1623186_+|hypothetical-protein	unknown	unknown	gnl|CDD|223477
NZ_AP012330.1|WP_004220778.1|1613252_1613918_+|vitamin-K-epoxide-reductase-family-protein	unknown	unknown	gnl|CDD|240605
NZ_AP012330.1|WP_004220804.1|1626943_1627234_-|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl|CDD|187856
NZ_AP012330.1|WP_022245331.1|1619075_1619924_+|patatin-family-protein	unknown	unknown	gnl|CDD|132847

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_AP012330.1|WP_004220815.1|1629948_1631826_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	2.5e-93	308.1	0.0
NZ_AP012330.1|WP_004220812.1|1629043_1629889_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	1.6e-97	320.8	0.9
NZ_AP012330.1|WP_004220809.1|1628332_1629010_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	3e-33	110.0	0.0
NZ_AP012330.1|WP_004220816.1|1631829_1632537_-|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	1e-63	209.5	0.0
NZ_AP012330.1|WP_004220806.1|1627301_1628333_-|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	2.2e-139	459.0	0.0
NZ_AP012330.1|WP_004220804.1|1626943_1627234_-|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	5.3e-28	92.0	0.1

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_AP012330.1|WP_004220812.1|1629043_1629889_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl|CDD|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	1.20914e-107
NZ_AP012330.1|WP_004220832.1|1641252_1642263_-|LacI-family-DNA-binding-transcriptional-regulator	gnl|CDD|380486	cd01544, PBP1_GalR, ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type 1 periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar binding of ABC-type transport systems.	7.04665e-75
NZ_AP012330.1|WP_004220827.1|1635769_1639084_-|mupirocin-resistant-isoleucine--tRNA-ligase	gnl|CDD|235681	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NZ_AP012330.1|WP_004220790.1|1621154_1622381_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl|CDD|224090	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism].	9.4369e-108
NZ_AP012330.1|WP_004220816.1|1631829_1632537_-|type-I-C-CRISPR-associated-protein-Cas5	gnl|CDD|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	2.21594e-92
NZ_AP012330.1|WP_047749757.1|1619997_1620954_+|LysR-family-transcriptional-regulator	gnl|CDD|223656	COG0583, LysR, Transcriptional regulator [Transcription].	3.70539e-30
NZ_AP012330.1|WP_004220783.1|1616200_1617850_+|ABC-transporter-substrate-binding-protein	gnl|CDD|173853	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel/dipeptide/oligopeptide transport systems, which function in the import of nickel and peptides, and other closely related proteins. The oligopeptide-binding protein OppA is a periplasmic component of an ATP-binding cassette (ABC) transport system OppABCDEF consisting of five subunits: two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Similar to the ABC-type dipeptide and oligopeptide import systems, nickel transporter is comprised of five subunits NikABCDE: the two pore-forming integral inner membrane proteins NikB and NikC; the two inner membrane-associated proteins with ATPase activity NikD and NikE; and the periplasmic nickel binding NikA, which is the initial nickel receptor that controls the chemotactic response away from nickel. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand binding domains of ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.15408e-135
NZ_AP012330.1|WP_022245330.1|1617980_1618919_-|isoaspartyl-peptidase/L-asparaginase	gnl|CDD|366471	pfam01112, Asparaginase_2, Asparaginase.	3.30931e-103
NZ_AP012330.1|WP_004220809.1|1628332_1629010_-|CRISPR-associated-protein-Cas4	gnl|CDD|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.71376e-31
NZ_AP012330.1|WP_004220815.1|1629948_1631826_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl|CDD|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	5.58766e-81
NZ_AP012330.1|WP_004220779.1|1614034_1614934_-|diaminopimelate-epimerase	gnl|CDD|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	3.41659e-75
NZ_AP012330.1|WP_004220828.1|1639485_1640934_-|MFS-transporter	gnl|CDD|273270	TIGR00792, Melibiose_carrier_protein, sugar (Glycoside-Pentoside-Hexuronide) transporter. The Glycoside-Pentoside-Hexuronide (GPH):Cation Symporter Family (TC 2.A.2) GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	3.94518e-123
NZ_AP012330.1|WP_004220777.1|1612233_1613160_-|PHP-domain-containing-protein	gnl|CDD|223686	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only].	1.9446e-29
NZ_AP012330.1|WP_022245329.1|1615032_1615809_+|glutamate-racemase	gnl|CDD|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	2.52479e-110
NZ_AP012330.1|WP_004220806.1|1627301_1628333_-|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl|CDD|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	2.66824e-177
NZ_AP012330.1|WP_033524077.1|1622517_1623186_+|hypothetical-protein	gnl|CDD|223477	COG0400, COG0400, Predicted esterase [General function prediction only].	3.16141e-14
NZ_AP012330.1|WP_004220778.1|1613252_1613918_+|vitamin-K-epoxide-reductase-family-protein	gnl|CDD|240605	cd12922, VKOR_5, Vitamin K epoxide reductase family in bacteria. This family includes vitamin K epoxide reductase (VKOR) mostly present in actinobacteria. VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. In some bacterial homologs, the VKOR domain is fused with domains of the thioredoxin family of oxidoreductases which may function as redox partners in initiating the reduction cascade.	1.61101e-46
NZ_AP012330.1|WP_004220804.1|1626943_1627234_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.58069e-30
NZ_AP012330.1|WP_022245331.1|1619075_1619924_+|patatin-family-protein	gnl|CDD|132847	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.	7.83659e-104

Protein sequences

>NZ_AP012330.1|WP_033524077.1|1622517_1623186_+|hypothetical-protein
MRLNVSTSIETAACEIAGDDLLFLGFHGFSNDENEMIRIIDAIYDVPKQDASSTDNSIAPAQHPNYLSFRGTYERPYIGSYYWYPDGCSVGERRRECSAVGDAVVRLLDSPAYAHFRKVLIGFSQGGYLSYRMVAEHPDAFDMAILMSPSFKGETAEPLPATGRTRFALCYGSEDRTIPLSDQQRARNKLAQTGNLTYFEYPGMVHGICDQEIRDLRAWLGL
>NZ_AP012330.1|WP_004220790.1|1621154_1622381_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MEEIMEMKHRTGSGFDADAIDHTTAADLAAVGSDKWTRYPGCIGAFIAEMDYGLAPCIQKAIDNACDHCKLGYIPEPWKQRVAEACAGWQRSHYGWDVDPSIIRVVPDVLEAYEIFLRELVGAGNSVIVPTPAYMPFLSVPKLYDVDVIEIEMLQSGDAETGEAQWVFDFDAIERAFAAGCHAFVLCNPHNPIGKVLTLEEELRLSDLAAQYDVRIFNDEIHAPFVFEGKHIPFPTISEQAALQSMTATSASKSFNIPGTKCAQVLLTNPADRDMWAVKAEWSEHQTATIGAIATTTAYNEGDLWFQDAFAYVCRNLALFDEQMRERFTGVGYIKPQGTYIAWLDFSPLGIDDPAAYFLEKAQVALTDGRSCGETGAGCVRVNIAMPYPLLVECLDRMFNALHADGLL
>NZ_AP012330.1|WP_047749757.1|1619997_1620954_+|LysR-family-transcriptional-regulator
MTANATGFSTKTLNPQILVTLWNVERLGSFSAVARETGWSQPAISQQIRKIERELDAKLVQRTSHGVELTPIGRILARHGQLIDNRVTQAVKDVEEYQRNGSTHIRLVAPPSVCSSFVARVLVHISKTSDIRVSLMQMEPPEAMEALEQGLADCAIIFQYNSLPALAGPDDLEVAPFGVDPLMLLIGANNAIARQYESSHLPVQLVSARSEQWIAGCETCQANLVSLARAAGFTPEITHSTDDFWATQNLVEVGMGVSIVSRLATTAGIQPDLAALPIADNNAFRTVCFVTRKVDDRPAVARVKDEIERASHQYLENI
>NZ_AP012330.1|WP_022245331.1|1619075_1619924_+|patatin-family-protein
MAHRTAMIDVGGGFRAIYGAGVMDRMLEDGISVDHCYGVSAGSANMVSFIAKQHGRNHTFYTQYAFRKEYASFDSYVKNHNFANLDYVYSTLSNHDGENPVDYAAFEANPTGFTVVACNAEDGSTKYFGKSDVGYDNFDILKASSAVPVACEPYAIDGIPYYDGGIADPIPVQKAIDDGHDRIVVILTRPKDTVREQKRDIGPARILRRTHPQAAEKLLNRYQTYNDEVALAKEYEQDGRVLILAPESLYGLNTLSKSFEGLERMYRAGYAAAEAIPAFLKS
>NZ_AP012330.1|WP_022245330.1|1617980_1618919_-|isoaspartyl-peptidase/L-asparaginase
MNEAALPQSTVHIAQADPDGILLVIHAGAGNRGKKDTPERRAQVEQDLNRALEAGYALLEQGAPAEDAVCAAIRVMEDAPEFNAGRGAALTSEGIVSMDSCLMTGVDGEVGSACGLTTSKNPINVARAIKEKTKHVMFAKPGNDLLKEWGIELCDSEYFITPARQESLREAQSNGDEWEKHGTIGAVARDSSGNIAAGTSTGGITNQMPGRVGDSPLPGCGTYANNDSVAISCTGIGEAFVKEVAAHQVSDRVLYAKEEPIEAAKAALDGVARHHGDGGMIVVPAHGEGAMVFNSEMMNCGWKSPKGSYVQS
>NZ_AP012330.1|WP_004220783.1|1616200_1617850_+|ABC-transporter-substrate-binding-protein
MKNNTFRRLLAMAAAGAMLTSIAACGSSSNDDTASNGSDSTSLISVNNSEPQNGLIPSDTNEMGGGRVIRYLFEGLVSFDAKGKQHLEVAESITPNEDATTYTIKLKKGWKFTNGEAVTAHSFADTWSFAANVKNAQKTASRFSTIKGYDELQDPNVDPKATLSGLSTPDDYTLVVELNKPDSVFPTKLAHQSMFPLPSVAFKDIKKFGQAPIGNGPYKFKSWSHDKNIIVVPNRDYKGSRKVSNKGIEYRVYTNEDSAYSDVLSGNLDVMDQIPQSAVKTFRQDSSVIAYSQAGSSFQSFVIPERLEHFGNDEEGQLRRQAISMAIDRDQIVKKVYNNTKTPTTDFTSPLVPEYVKKLEQNGSNLKYNASKAKELWKKANAIKPWSGNFRIAYNADGGHKEWVDAVCNQIKNTLDIDAAGEPYATFSDVRNQVTNRTIKTAFRAGWMLDYPSAEDYLNPLYASSSADGHGSNDGDYKSAEFDELLNAALAQTDVKKRTEDFTKAQEVLAKDLPVIPLWNDNVAAASATNVKNVSFDYTNLPTYNTITK
>NZ_AP012330.1|WP_022245329.1|1615032_1615809_+|glutamate-racemase
MTSTAPIGVFDSGLGGISVAREIRRDMPNERVLYFGDSANAPYGTKSPEQVRKLSDAIVKRFVEQGVKAVVIACNTATSAAANELRDKYDIPIIGMEPALKVACDRGHGNRQRVIVAATPLTLRERKFAVLMDRFKTDHTIFPEPCPGLVEIVEHGQLDDHDVVMHTLHQYFDQYDLSTIDSVVLGCTHFVFYRDYFRELLPDTAAIIDGNEGTVRHLGVVLESLGKLSPEDADGGIELANSDTSTQIAQLAQSLLDR
>NZ_AP012330.1|WP_004220779.1|1614034_1614934_-|diaminopimelate-epimerase
MSIPSIVYKAHATGNDFVVYLDAEGTYEPTADEVRFLCDRHFGIGGDGLIRLTHPQAVSDLNDKQIAVCAADNADWFMDYRNADGSLAEMCGNGTRAITLFAQRQGIAGQPGGEPFRLGTRAGVKVLTSLGDVPTLGKDVFQVEMGSWKRGDLDGYEVTIPGTAGSARGTFVDMGNPHVVAVIEDAFSSLPTVEQLDLVTKPVVAPRIESDQNVEFVRIDEQSEGDNEGNATMRVNERGCGETLSCGTGLCATAITLRAKTGIDHWTITVRGGTLRVDVTDNDVKLTGSATIVGKIELL
>NZ_AP012330.1|WP_004220778.1|1613252_1613918_+|vitamin-K-epoxide-reductase-family-protein
MSDFSGEQVAEATLDDDYTKPRGWRHTATWTYLVMLIASAVALVVSFVLSAETLKMARNPGQKLSCDVNAVMSCSAVAESWQAEVVKFAGLSFPNAFFGIAAESVFVTIAVIGLTKVAVPRWFASCTWLGGLAALAYSYWLTSQSLFVINALCPWCLCLMFSTTVQFMALSHATAVVQEIPAKREGVRTYYRLNYDLMVDALWIVTLIVIILVEDGPLLFS
>NZ_AP012330.1|WP_004220777.1|1612233_1613160_-|PHP-domain-containing-protein
MIRVGTAAPPAEGWDIHCHTVFSDGTETPRALLQEARALRLHGVAIADHDTTSGWQDALAASREVRLPLLRGTEITAVDESVSVHMLAFQYDPLNADISEMFASTREARLRRTKRMVELMAQDFPITWDDVLAQVREGKRTTIGRPHIADALVAAGVYETRSDAFADAVSATSKYYIPTPSPTTHDVVAAVKGAGGVVVIAHAGDPRRNRTLLTDRQIESLITEGLDGLEVWHRGNPSEQRERLLTIARRHDLLVTGGSDWHGKGKPNALGENLTSDETVQEIINRGVHLSKESSKAKIKNRNAIIDA
>NZ_AP012330.1|WP_004220804.1|1626943_1627234_-|CRISPR-associated-endonuclease-Cas2
MMVVVAYDVSTETPEGKRRLRLVAKTCVKYGQRVQNSVFECSVSPSDYLVLVHDLLKIANTDEDSLRFYKLGARYADRIEHYGRERSLPVNDVMMI
>NZ_AP012330.1|WP_004220806.1|1627301_1628333_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MKQLLNTLFVMTEDAYLALENDNVVIHQNDKTLAKVPLRSIEGIMCFSYKGASPALMGRCGKLGVSMAFYSPRGHYYCSVLGEENRNVLLRREQFRVADDEQKSLCYAKSFIVGKLYNAKWVLERTKRDHALRVNIDRLAEQSGKLSAALLEARKSLTVDELRGVEGLAAKDYFYAFDDLVLKNKDDFFFTNRSRRPPLDRLNALLSFCYSILTNDCIAALQGVGLDPYVGFMHTDRPGRASLALDLVEEFRPVLADRFVLTLVNTGAVKPGDFEIRENGGVLLSDSGRKKVLTAWQKKKSDQILHPFLQEKISWGLVPYVQALLLARSLRGDLDDYPPFMWK
>NZ_AP012330.1|WP_004220809.1|1628332_1629010_-|CRISPR-associated-protein-Cas4
MKGPEGYPEEDWLALSGIQHFSFCKRQWALIHIEQLWSENYLTTAGHLEHERAHDYATSESRGDTLIMRDLRVYSRALGITGACDVVEFHKSNDGVPLHGRDGLWLPYPIEYKHGKYKTIDADRLQLCAEAMCLEEMLACDIPEGALFYRQTKRRERVKLDEDLRNMVEADFLQMHDLFSRGWTPKVKQTRSCSSCSLRDLCLPELRKVKSAKAYIEERLKESGE
>NZ_AP012330.1|WP_004220812.1|1629043_1629889_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MAALENKIDFAVVFASNNANPNGDPLNGNRPRTTSEGLGEVSDVALKRKIRNRLQDAGETIFVQSDDRSDDGAKSLSDRFNTYLKTLPKEEQKQKNLVFQKVCEQWLDVRAFGQVFAFKKAKDVDEVSLGVRGPVSIQAAFSVEPIAIDDVQITKSVNSETTDTGKKSSDTMGMKYRVSGRAVYATYGSISPQLAEKTGFTAEDAEKIKEALVTLFENDESSARPAGSMEVLDVVWFTHNSKSGQYSSAKVHRSVSVNVDGTVAVNGSSIPDLRYEVIEGR
>NZ_AP012330.1|WP_004220815.1|1629948_1631826_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSLSNNLLLINESVHNAAGKIPRSGDGSTLDIRKALIPPGHTTLPTLLTLGVNENGEILRLLREKQTIVIPCTESSMGRTIKPVPHPLFDQLQYLDLHFDKEKTSMYLEQLAAWKGDNVKLNAIYRCVSEHSISEEAARFNVEITEKDRKAGVCFEVEIGLQNSDVSNDPDIQAQWISYLYHDRQKKGKDMFGEDLYAPILNFPKKIVSVNGNAKLLSANDSTNFTYRGRFASKEEALQVDGETSQKIHSTLQWLVNNHGTITDTQAIVICSVKNPNEKPKLDPQEGSYDFGSLFSSDVDEPEAPRNDIADALTATNFQYAQVFSKVLRGYGNANKLKKHADPMMIVILDAATSGRLSVTYYRELSKDEYVESILRWHVDAAWPLKMYDKEKKKFVAYEGAPPFADIISCAYDVSDRSSKAYKRFAKNTKKQLIECMFGGESLPRFILDATYHRVTKPMGYDAPGAWLRDFEIACSLWKKHYIDDARKQNKQEDTISMYLEPTRNDRDYLYGRLLALADRFENGVLYKQGISDTRPTNAVKLMSNFVAKPFTTWGTLWKQLMPYLKSANGAPWFQNSVDEVMALFKEGDFEDNRALSPLFLLGYSCQRRESMRKAQEASQKSKEN
>NZ_AP012330.1|WP_004220816.1|1631829_1632537_-|type-I-C-CRISPR-associated-protein-Cas5
MQRHRNSIEYEVSGRYALFSEAATRVGGEKFSYQVPTYQALKGITESIYWKPTFMWVIDAVRVMNRVQTEGKGIRPIKMSGGNDLSYYTYLKDVRYQVLAHFEWNDQREDLVADRDENKHHNIALRSVQKGGRRDIFLGTRECQGYVEPCEFGSGEGFYDGYGEWNMGYMFHGFTYPDENEDHDFIARFWSPVMSDGIIEFERPESTKLDGRIIRKNQSVKEFALGSNLQPVGEE
>NZ_AP012330.1|WP_004220827.1|1635769_1639084_-|mupirocin-resistant-isoleucine--tRNA-ligase
MSENNVYPKAAAGEQSANVAPNPSFPKLEESVLDYWEKDATFQKSIERRPSGDHSQNEFVFFDGPPFANGLPHYGHLLTGYAKDVIPRYQTMKGRKVNRVFGWDTHGLPAELEAQKELGIDSVDQVKEMGIDKFNDACRASVLKYTNEWKDYVHRQARWVDFEHGYKTLNIPYMESVMWAFKQLYDKGLAYQGYRVLPYCPKDQTPLSAHELRMDADVYQDRQDTTVSVAVKLRDEEDAYAVFWTTTPWTVPTNFAIVVGADIDYVEVRPTEGKFAGKKFYLGKPLLGSYAKELGDNYEIVRELKGAEMEGWRYYPVFPYFAGDENAVEGKVPGPEGYQIFTADYVDTVEGTGLVHQAPYGEDDMNTLNAKGIKSVDVLDAGCKFTALCPDYEGMYVFDANKPILRNLRAGDGPLERIPEEQRAILFQEKSYVHSYPHCWRCATPLIYKPVSSWFVSVTKIKDRLLELNQEINWIPGNVKDGQFGKWLANARDWSISRNRFWGSPIPVWVSDDPKYPRVDVYGSLDELKADFGDYPRDHEGNVNMHRPYIDELTRVNPDDPTGKSHMHRISDVMDCWFESGSMSFAQYHYPFENKETFEQHFPCDYIVEYIGQTRGWFYVLHIMATALFDKPAFKNVICHGIVLGSDGQKMSKHLRNYPDVNGVFNDFGSDAMRWFLMSSPILRGGNLIVTADGIRDTVRQVMLPVWSSYYFFTLYANAANNGAGFDARALRADEVAALPEMDRYLLARTRRLIEKTQSSLDNFLISDACEAVSDFIDMLTNWYIRNNRDRFWNEDANAFNTLYTVLEAFMRVIAPLAPMEAEAVWRGLTGGESVHLADWPFLADEQTGEATELGRVLVDDPALVDAMEKVREVVSGTLSMRKTKQIRVRQPLHKLTVVVENTDAVAAYDEILKSELNVKNVELCTLEDAEAQGLKIINELRVNARVAGKRLRKDVQFAIKASKSGAWHVNADGAPVCETPNGEIVLEEGEYELINSVEEKNAEEAANSVSAALPTGGFVILDTELNDDLIAEGYARDVIRAVQDARKAADLEISDRIALTLTVPADDVAKVEQFKDLIASETLATSFNVKEGGSELSVEVAKA
>NZ_AP012330.1|WP_004220828.1|1639485_1640934_-|MFS-transporter
MGNGNNGSKGGNLLSRVAYSFGNVGQSAFYNALSTYFIVYVTSSLFSGVDKSVATKLIGIITGLVVVIRIAEIFIDPLLGNIIDNTNTKWGRFKPWQLIGGTVSAILLVLVYTGLFGLVNVNTTLFIVLFIITFIVLDVFYSLRDISYWGMIPALSSDSHERSTYTALGSFGGSIGYNGLTIVVIPIVTYFSWVFTGKYVESQSGWTCFAIIVAILGILTVCSVAFGTKESTTTLRAKAEDNGGPLQAFKALAQNDQLLWVALSYLLYAIANVATTGVLMYLFKYILDNTAAYSIVGVIPVITGLVMAPLYPILNKRIPRRYLYLGGMVLMIVGYLLFAVGSSNLAMVIVGLVFFYLPQTFIQMTAILSLTDSIEYGQLKNGKRNEAVTLSVRPMLDKIAGACSNGIVGFIAVAAGMIGDATAADMTAANIGMFKVCAFYVPLGIIVLSLLVFLFKVKITEKMHDEIVEELEAKLASGEISE
>NZ_AP012330.1|WP_004220832.1|1641252_1642263_-|LacI-family-DNA-binding-transcriptional-regulator
MATIKEIAQRTGFSQATVSRLLNGDPTLSVREETRRKIIQASEDLGYSVQTKRIVIPHEVALLDNEKSDEALRDSYFTDLRSALECNAEQQRMEMTVFHNLDDMIARSSKFDGFMAIGADQISEEDLERLHRAMPYGVFIDVNPAPNLFDSVQPDLQQTMHDAVAACAAKGMKRVGFIGGKGCLMNFYEVDEENRATYFRREARRFGIQSDGLVYSDGLFTVSNGRALGEQFVRDHNGVLPDAVIVAADVIAVGVLQAFNAVGVLVPRDISVISINNQTISQLTSPPLSTFSIDQNELARVATLMLGDAISGKRTIRQHAYLSTSLVVRDSFVPAK
>NZ_AP012330.1|WP_152548814.1|1642450_1642588_+|integrase
MHGKDNKKSLASKSQFQSKGFSRGSVPFKATGHKGGISRQGSKRG

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP012330_5	5.2|105673|27|NZ_AP012330|CRISPRCasFinder	105673-105699	27	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	431103-431129	4	0.852
NZ_AP012330_5	5.2|105673|27|NZ_AP012330|CRISPRCasFinder	105673-105699	27	NZ_CP012917	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence	297096-297122	4	0.852
NZ_AP012330_6	6.2|108233|26|NZ_AP012330|CRISPRCasFinder	108233-108258	26	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	691748-691773	4	0.846
NZ_AP012330_1	1.3|34970|26|NZ_AP012330|CRISPRCasFinder	34970-34995	26	NZ_CP028970	Aminobacter sp. MSH1 plasmid pUSP2, complete sequence	171033-171058	5	0.808
NZ_AP012330_1	1.3|34970|26|NZ_AP012330|CRISPRCasFinder	34970-34995	26	MN693897	Marine virus AFVG_250M931, complete genome	3552-3577	5	0.808
NZ_AP012330_5	5.2|105673|27|NZ_AP012330|CRISPRCasFinder	105673-105699	27	NZ_CP024936	Paraburkholderia graminis strain PHS1 plasmid pPHS1_P, complete sequence	144528-144554	5	0.815
NZ_AP012330_8	8.3|1624680|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1624680-1624712	33	KR072689	Paracoccus phage Shpa, complete genome	30232-30264	5	0.848
NZ_AP012330_1	1.2|34919|26|NZ_AP012330|CRISPRCasFinder	34919-34944	26	NZ_CP016287	Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence	70541-70566	6	0.769
NZ_AP012330_8	8.3|1624680|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1624680-1624712	33	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	1234513-1234545	6	0.818
NZ_AP012330_8	8.3|1624680|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1624680-1624712	33	NZ_CP025548	Mycobacterium paragordonae strain 49061 plasmid unnamed2, complete sequence	74342-74374	7	0.788
NZ_AP012330_8	8.27|1626290|34|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626290-1626323	34	KR053194	Gordonia phage GAL1, complete genome	3434-3467	7	0.794
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	1426678-1426710	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP049794	Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence	8568-8600	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP022766	Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence	1500625-1500657	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	1678624-1678656	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP016555	Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence	1245974-1246006	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	1803928-1803960	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052069	Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence	1424113-1424145	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP016905	Ralstonia solanacearum strain KACC 10709 plasmid unnamed1	503088-503120	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	1944302-1944334	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP022769	Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence	1508075-1508107	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP022773	Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence	1217732-1217764	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	1432926-1432958	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP022791	Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence	1464852-1464884	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	1429655-1429687	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052071	Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence	1609083-1609115	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	1393639-1393671	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP022779	Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence	1519556-1519588	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052075	Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence	1609050-1609082	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052085	Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence	1483287-1483319	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052095	Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence	1518259-1518291	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052105	Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence	1607844-1607876	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	1418392-1418424	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052087	Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence	1483599-1483631	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052097	Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence	1518259-1518291	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052115	Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence	1607880-1607912	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052127	Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence	1483287-1483319	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	1419038-1419070	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052089	Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence	1482490-1482522	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052093	Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence	1518259-1518291	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052101	Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence	1518259-1518291	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052099	Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence	1518259-1518291	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052107	Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence	1607880-1607912	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052117	Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence	1607869-1607901	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	1418414-1418446	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP022793	Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence	1425674-1425706	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP022785	Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence	1406327-1406359	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP022787	Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence	1459271-1459303	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP022756	Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence	1498461-1498493	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052129	Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence	1515574-1515606	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052121	Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence	1607869-1607901	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	1418414-1418446	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052131	Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence	1483598-1483630	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052073	Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence	1608870-1608902	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	1418414-1418446	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	1418414-1418446	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052109	Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence	1607880-1607912	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052091	Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence	1518262-1518294	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052103	Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence	1607891-1607923	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052119	Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence	1607692-1607724	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP016613	Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence	1206799-1206831	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP021449	Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence	1235623-1235655	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP049790	Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence	643079-643111	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	392483-392515	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	1403646-1403678	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	1237977-1238009	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP015851	Ralstonia solanacearum strain YC40-M plasmid, complete sequence	964565-964597	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP022482	Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence	1608987-1609019	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	559964-559996	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP022781	Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence	533198-533230	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	CP011998	Ralstonia solanacearum strain YC45 plasmid, complete sequence	1477076-1477108	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052111	Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence	527843-527875	7	0.788
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NZ_CP052113	Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence	527843-527875	7	0.788
NZ_AP012330_8	8.6|1624879|34|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1624879-1624912	34	MK937598	Microbacterium phage Celaena, complete genome	26807-26840	8	0.765
NZ_AP012330_8	8.18|1625686|34|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1625686-1625719	34	NZ_CP017077	Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence	416393-416426	8	0.765
NZ_AP012330_8	8.18|1625686|34|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1625686-1625719	34	NZ_CP040821	Paraoceanicella profunda strain D4M1 plasmid pD4M1C, complete sequence	27858-27891	8	0.765
NZ_AP012330_8	8.21|1625888|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1625888-1625920	33	NZ_CP015446	Streptomyces sp. S8 plasmid unnamed, complete sequence	47447-47479	8	0.758
NZ_AP012330_8	8.21|1625888|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1625888-1625920	33	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1136654-1136686	8	0.758
NZ_AP012330_8	8.21|1625888|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1625888-1625920	33	NC_011143	Phenylobacterium zucineum HLK1 plasmid, complete sequence	149635-149667	8	0.758
NZ_AP012330_8	8.21|1625888|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1625888-1625920	33	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	676503-676535	8	0.758
NZ_AP012330_8	8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1626357-1626389	33	NC_010625	Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence	532515-532547	8	0.758
NZ_AP012330_8	8.3|1624680|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1624680-1624712	33	NZ_CP029832	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence	143264-143296	9	0.727
NZ_AP012330_8	8.18|1625686|34|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1625686-1625719	34	MG962366	Rhodococcus phage Finch, complete genome	67793-67826	9	0.735
NZ_AP012330_8	8.11|1625220|34|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT	1625220-1625253	34	AP014720	Arthrobacter sp. Hiyo8 plasmid pHiyo8-1 DNA, complete genome, strain: Hiyo8	246337-246370	11	0.676

1. spacer 5.2|105673|27|NZ_AP012330|CRISPRCasFinder matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 4, identity: 0.852

cgcaggatggcaaacgtgccgcacggg	CRISPR spacer
cgcatgatggcaaacgtgccgcgcgcc	Protospacer
**** *****************.**  

2. spacer 5.2|105673|27|NZ_AP012330|CRISPRCasFinder matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 4, identity: 0.852

cgcaggatggcaaacgtgccgcacggg	CRISPR spacer
cgcatgatggcaaacgtgccgcgcgcc	Protospacer
**** *****************.**  

3. spacer 6.2|108233|26|NZ_AP012330|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.846

gtaatgcggcgaaagtgccctgtggt	CRISPR spacer
gcaatgcggcgaaagcgccccgtggg	Protospacer
*.*************.****.**** 

4. spacer 1.3|34970|26|NZ_AP012330|CRISPRCasFinder matches to NZ_CP028970 (Aminobacter sp. MSH1 plasmid pUSP2, complete sequence) position: , mismatch: 5, identity: 0.808

gcaagagatgaaaatgggcgcgtgga	CRISPR spacer
gcacgagatgaaaatgggcgccgtgc	Protospacer
*** *****************   * 

5. spacer 1.3|34970|26|NZ_AP012330|CRISPRCasFinder matches to MN693897 (Marine virus AFVG_250M931, complete genome) position: , mismatch: 5, identity: 0.808

gcaagagatgaaaatgggcgcgtgga	CRISPR spacer
tcggaagatgaaaatgggcgtgtgga	Protospacer
 *...***************.*****

6. spacer 5.2|105673|27|NZ_AP012330|CRISPRCasFinder matches to NZ_CP024936 (Paraburkholderia graminis strain PHS1 plasmid pPHS1_P, complete sequence) position: , mismatch: 5, identity: 0.815

cgcaggatggcaaacgtgccgcacggg---	CRISPR spacer
ggcaggatggcaaacgtgccg---gtgttt	Protospacer
 ********************   * *   

7. spacer 8.3|1624680|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to KR072689 (Paracoccus phage Shpa, complete genome) position: , mismatch: 5, identity: 0.848

ggggatgcggtcgaggatcgggctgacctgcgt-	CRISPR spacer
gcggatgcggtcgaggatcggggtca-cagcgtg	Protospacer
* ******************** * * * **** 

8. spacer 1.2|34919|26|NZ_AP012330|CRISPRCasFinder matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.769

gcaaacggcaaaaagtgcgttccagt	CRISPR spacer
tgaaacggctaaaagtgcgttccgtg	Protospacer
  ******* *************.  

9. spacer 8.3|1624680|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 6, identity: 0.818

ggggatgcggtcgaggatcgggctgacctgcgt	CRISPR spacer
ggggctgcggtcgatgatcgggctgccgtccat	Protospacer
**** ********* ********** * * *.*

10. spacer 8.3|1624680|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025548 (Mycobacterium paragordonae strain 49061 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.788

ggggatgcggtcgaggatcgggctgacctgcgt	CRISPR spacer
ggcgcagccgtcgaggatcgcgctgacctgggc	Protospacer
** *  ** *********** ********* *.

11. spacer 8.27|1626290|34|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to KR053194 (Gordonia phage GAL1, complete genome) position: , mismatch: 7, identity: 0.794

-tggatgccatacgcatttcctcacggaaaatgtt	CRISPR spacer
atcga-gctttacgcatctcctcacggaagatgtc	Protospacer
 * ** **. *******.***********.****.

12. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

13. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

14. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022766 (Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

15. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

16. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016555 (Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

17. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

18. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052069 (Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

19. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016905 (Ralstonia solanacearum strain KACC 10709 plasmid unnamed1) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

20. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

21. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022769 (Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

22. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022773 (Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

23. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

24. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022791 (Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

25. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

26. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052071 (Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

27. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

28. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022779 (Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

29. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052075 (Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

30. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052085 (Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

31. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052095 (Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

32. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052105 (Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

33. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

34. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052087 (Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

35. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052097 (Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

36. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052115 (Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

37. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052127 (Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

38. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

39. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052089 (Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

40. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052093 (Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

41. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052101 (Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

42. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052099 (Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

43. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052107 (Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

44. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052117 (Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

45. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

46. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022793 (Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

47. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022785 (Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

48. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022787 (Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

49. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022756 (Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

50. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052129 (Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

51. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052121 (Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

52. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

53. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052131 (Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

54. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052073 (Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

55. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

56. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

57. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052109 (Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

58. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052091 (Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

59. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052103 (Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

60. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052119 (Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

61. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016613 (Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

62. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

63. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

64. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

65. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

66. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

67. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015851 (Ralstonia solanacearum strain YC40-M plasmid, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

68. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022482 (Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

69. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

70. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022781 (Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

71. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

72. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052111 (Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

73. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052113 (Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

-cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
gcagatcag-ccagaggatggcgcgcgcgcgcag	Protospacer
 *  .**.* ************** **** ****

74. spacer 8.6|1624879|34|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to MK937598 (Microbacterium phage Celaena, complete genome) position: , mismatch: 8, identity: 0.765

cgccgccctgcttggcgattgccacgtcggtcag	CRISPR spacer
tgccgccctgcttggcgatcgcgaccccgatagg	Protospacer
.******************.** ** .**.* .*

75. spacer 8.18|1625686|34|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017077 (Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence) position: , mismatch: 8, identity: 0.765

gcaacgccttccacgatgcgatcacctcgggtgt	CRISPR spacer
tcaacgccatcgacgatgcgatcaccgagacttt	Protospacer
 ******* ** **************  *. * *

76. spacer 8.18|1625686|34|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040821 (Paraoceanicella profunda strain D4M1 plasmid pD4M1C, complete sequence) position: , mismatch: 8, identity: 0.765

gcaacgccttccacgatgcgatcacctcgggtgt	CRISPR spacer
accacatcttccaggatgcgatcaccgcgggctt	Protospacer
.* **..****** ************ ****. *

77. spacer 8.21|1625888|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015446 (Streptomyces sp. S8 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

gtcggcgctgagcgggtcgccgtcctgcatgag	CRISPR spacer
tgcggcggtgagccggtcgccgtcctgctgggc	Protospacer
  ***** ***** **************  *. 

78. spacer 8.21|1625888|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 8, identity: 0.758

gtcggcgctgagcgggtcgccgtcctgcatgag	CRISPR spacer
gtcggcgccgggcgggtcgccgtcggcgccgag	Protospacer
********.*.*************     .***

79. spacer 8.21|1625888|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NC_011143 (Phenylobacterium zucineum HLK1 plasmid, complete sequence) position: , mismatch: 8, identity: 0.758

gtcggcgctgagcgggtcgccgtcctgcatgag	CRISPR spacer
caggccggtgagcgggtcggcgtcctgcaggtg	Protospacer
   * ** *********** ********* * *

80. spacer 8.21|1625888|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 8, identity: 0.758

gtcggcgctgagcgggtcgccgtcctgcatgag	CRISPR spacer
gtcggcgccgggcgggtcgccgtcggcgccgag	Protospacer
********.*.*************     .***

81. spacer 8.28|1626357|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 8, identity: 0.758

cttgtcggcccagaggatggcgctcgcgagcag	CRISPR spacer
cttgtcggcccagacgatgccgctggtggcccc	Protospacer
************** **** **** *.*. *  

82. spacer 8.3|1624680|33|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029832 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.727

ggggatgcggtcgaggatcgggctgacctgcgt	CRISPR spacer
ctcgatgcggtcgatgatcaggctgaccgtctc	Protospacer
   *********** ****.********  * .

83. spacer 8.18|1625686|34|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to MG962366 (Rhodococcus phage Finch, complete genome) position: , mismatch: 9, identity: 0.735

gcaacgccttccacgatgcgatcacctcgggtgt	CRISPR spacer
gccacgcctcccacgatgcgatcagggcgtacgc	Protospacer
** ******.**************   ** ..*.

84. spacer 8.11|1625220|34|NZ_AP012330|PILER-CR,CRISPRCasFinder,CRT matches to AP014720 (Arthrobacter sp. Hiyo8 plasmid pHiyo8-1 DNA, complete genome, strain: Hiyo8) position: , mismatch: 11, identity: 0.676

caaaatcatcacgacaaaaacgcagatctggaat	CRISPR spacer
acgcatcatcacgacaaaaccgcaggtcagaggc	Protospacer
  . *************** *****.** *....

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	2019909 : 2028782	7	Escherichia_phage(33.33%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_AP012330|2019909:2028782|DBSCAN-SWA
ACTAAAAAGCTGTTTCAATGTAATACCGAGGACGATGCTTAGTTTCCAAGTAGATTTTACCTACATATTCGCCTACGATACCCATCGAAACCATTAAGAAACCTCCAATGAGCCATATAGAGCACATCATAGATCCCCAACCGACAACAGCATGATTCATAAAAACAGACCCGATTGCATATGCCAACATGATTAAGCCTATGAGTATAGATATCACGCCCAGACCCGTGACAAACTTCAAAGGCTTTGTGGAAAAAGATGTAATACCTTCCAGCGCAAAAGCAATCATCTTCTTCAATGGGTATTTAGACTCGCCAGCTTCACGCACACCACGCACATAATAAACCTTGCCGGTTTTAAAGCCAATCGACGGAACGATGCCTCGAAGGAATAAATTGACTTCGTGATACTCAGATAGAGCCTCCAAAGCCAAACGGCTCATCAATCGATAATCAGCATGATTGGGCACAGTTTCAGCACCCATCCATTCAAAAACACGATAAAACATCAATGCTGAATTCCTCTTAAACCAAGAATCCTTCTCCCGAGAGGAGCGAACGCCATACACGATCTCACAGTGCTCTTGGCTAAATTTCTTAACCATCTCATCTACAGCATTAACATCATCCTGCAAATCGGCATCCATGGAAATAGCCGCATCACATCCATCACGCAATGCTTGCATGAGTCCCGCGTATAAAGCACTCTGATGACCACGATTATGGGCAAGCTTCACTCCGCCGAACAACGCTTCATCCTCATAATGCAATTGCTGAATCAAATCCCAGGTACCGTCTTTAGATCCATCGTCAACAAATAGAATGCGACTTTTCCCCGAAATACCATCACAAGCAATCAGCTGATTAATCTTCTTTTTTAGCACATCAGCAGTATGTCTTAAACCTTCAGATTCGTTATAGCAAGGTAAGACAAAATAGACAACAGGTAAAGTCATAATGTCATTAGCCAAAATATATTCCCCAATTATCAAGTACTACCTTAAAAGGACAAAGCAATATAAATATATGCTCCAATACGCAAAAGCTAAAAATTAACTATTATCAAATCACCCTTCTTAGCGACACTTCCCGGAGCAGGCCAATGAGGCATTGCAGCACCGACTTTCTCAGCACTTTGCAACTGAGGCTTGCTGGCCTGTTTGAATTTGTTGCCCATGATATTCATAAAATTCGTCTTAACAAACGTTCCTTGCTCCGGCGAAACAGTTACCTCAAACAAAGACCGTCCGACCAGCCCTAGTTGATCCGAGGTAAAACAATCACTATTACATGCAGAAGGATGATAGTTCAAAAACACCAAAGTTTCTTTTGATTGATCGGTGACACCAAGCTCATCAATACGGTTCCTGATATCCTGCGCTAATTCCGCATCTTGCTGATGATTAATAGCCTCGGTATAAAAAATACGATTTACGATAAGCGCTTGGCTCCAGCTAAGGATAAATGCCAATACAACAGCAACATACTTAACCGCAATTTTCCCATTAAATAAGTCAGAAGTCCACATCACCAAGAAAACGACAGCGAAAGCAAACATCAGCGGATAAGACATTTCCGTTCTCACTGATGGTGCGCTTCCCAAGATAATACTCATCATCATTGGAGATAGACACAAACACAGCGAGACAATCAGCGTCAATACATCAACTTTATGCCGAAATACAGAAATCAATATTATTACAATAAATAGTGCCAACAAACAAGTGAAAACTTTTGAATAATATATTCCCTTGCCTGAATATAATGATGCAGCATGCAAACTTATTGATTGCAAAATGTGATGAACAGAGTCCTTGCCCCACCTCGACTGCTCACTGATGTAAGGGTTTGTCGTCATATGGCATATTTTCAACGCACATACATTAGCAACCACATATAAAAGATAAGAAATACAGAAAAATCCAGCACCTACTCCGATAAAAACAAACCGGCGAGCTAAAGTAAATTTGGAATTATCCCAAAATAATAAAATAAATACCATAGCAAAACCGGCGATAAAAACCGTCACCATTGCCAAATATAGCGAGAAGGAGACCGTAGCAAACAATACCGTTAGAAAGCCCATCCACCACTTTTTGCTTACAACGAAATCCATCAAACACATCAAGGCTATCGCTGCAAAACCTATGGCAATCCCCACTTCTGCTCCCATAAGAGAGAACCCTAACATTTCTGCCAAAACTGGAGATGTAACAAATGGTCCTACAAAATAAACCGGATGATATTTCCCTATAAAATTAGTGACGCCAGAAAAAAGATAAGCCCATAAAAGAGCCGCCACAAGTAAACAGACGGCAGTCAGGAATGATGCTAACGCGTTATTATACCAGTACAATCCCAACATTTTCTTCAGGAGCAACAATCCAAATCGTTCTAGCCCAATCCAAGATCGGTATAGTGAACTTTGGACTTGTATCATTGCCTCTGTATCAATAGAATATGAATTACCGAACATTTTCAGCTCATATCCCATAAGCAACAAAAATGTGCTCAGCACCATATCCCAAGGGTTCATGCGCAGAAAACGCATGAACCCGCGAACTGTATACTGCCTCTCTAAAGGAAAAGTCGACGTTGTGGAATCAACGGATTTCTCTCCAGAATTTTTCCTTTTTCCCTTAGCTATTGAGTCAATAGTCTGTTCTGTTGTTGATGCACATGTCATAGTGGATGCCCTAATTCACTGGTTTTTTAAAATCTGTTTGATCTTAGAAGCATCGCCCCATACGCCCGGCGAATCGTATGGACGATCAGGGAACACGCCATAGTCGAGCTTAATATTGAGATCATTCTCCTTGATATAGCGCTCGACGCGTTCAGCCAATGTCATCGGTTCACCAGTGCAGCAATTAATGACGCCATCAACCGCATCCTGCGAAACAACTGCACTAATTTGACCCGCAAGCTCATCTACATCGATGAAATCGTACTTATTTTTACCTGTAGTGAATGGGAAAGTCGCTTTGCCATCATTCGCTGCCTGCAGCAGCTTTGAGAAAATAGAGCTACCGTGAGCATCGTCGCCAACAATGTAGTAAGCACGAATCCATTGCGCAGTTGCATCATATTCCTTAGCAAGCATTAAAGTCGCCTCACGCAACGCATTCTTAGCAATTCCGTACATAGAAGCAGGATGGCAAGGAGTATTTTCATCAATCGCGCCTTCCCAATAACCAACTTCATGCATAGTTCCCATAACAGCGATCTGCTTAAGCCCAGAGTCAAGCATGTGCTTCAGAAAGCGATAATGGTTGGACAAATCCCCCATATGGTTATCCGAATTATGTTTAAAACCATCACGCCAAGCCATGTGCAGACATACATCAGGGGCCCCTAGCTCCTCAAATAAATCATCATTTGGCTCAAAAATATTTGCTTGTACTTTTGTGGCGCGTTCATCGACACCATCAAGCCGTAAATCTGAAGCAATGACGTCTTGTCCAGCATCAAGCAATGCACTCACGACATGACGTCCAATATATCCGCCAGCACCAGTTACCAAAATTTTCTTAGCCATATTTACAAAGTCTACCAGCAGGCTCCCCACAGGAAACAAGCGATTGAATGTCTAGCCCAATTTTCACGTTTTTAGAAAAACTCGTACGCGCAAGCGGCTAATATTGCATATATGGCTGAAGAGACGTTTACTCCCAAGAACATCATCGTGACCGGTGGCTGTGGTTTCATCGGGTCGAATTTCGTACATTACGTGGTCGACAACCATCCGGACGTGCACGTGACCGTGCTGGACGCTTTGACCTACGCAGGCAACATCGAGAACATCGCGGGCCTTCCCGAGGACCGTGTCGAGTTCGTGCACGGCAACATCTGCGACGCGGAGCTGCTCGACAGGATCGTGCCGGGCCACGATGCGATCGTGCATTACGCGGCCGAATCCCACAACGACAACTCGATTGCGGATCCAGAACCGTTCCTGAAGACGAACGTGGAGGGCACGTTCCGTCTGCTCGAGGCCGTGCGCAGGTACGGCATCCGCTACCACCACGTGAGCACGGACGAGGTGTATGGCGACCTCGCTTTGGATGATCCGGCCAAGTTCACGGAGCGTACCCCGTACCATCCGTCCAGCCCGTATTCGTCCACGAAGGCGGCATCGGACATGCTGGTGCGCGCGTGGACGCGTACGTACGGCATCCGCGCCACGATCTCGAACTGCTCGAATAATTACGGCCCGTACCAGCATGTGGAGAAGTTCATCCCGCGCCAGATCACGAACATTCTGGACGGGCAGCGTCCGAAGCTGTATGGCAAGGGCGAGAACGTGCGCGACTGGATCCACACCGAGGACCACAGCTCGGGCGTGTGGACGATTCTCACGAAGGGCCGCATCGGCGAGACGTACCTGATCGGCGCCAACGGCGAGAAGAACAACATCACCGTGCTACGCATGATCCTGAAGATGATGGGACAGCCGGAAGACGCGTTCGACTGGGTCAAGGACCGTCCGGGCCACGACCGCCGTTACGCGATCGATTCCACGAAGCTCAGGACCGAATTGGGCTGGACGCCCACGCACACGGATTTCGAGTCCGGTCTGAAGACCACCATCGACTGGTACACGGACAACCGCCAGTGGTGGGAGCCGGCCAAGGCCGCCACTGAAGCCAAGTACAAGCAGCAGGGCCAGTAAAAAGCGTATGGAAAACAGGCCGCGCCCGGAAAAACGCGGCCCCTGAATGTGGTCCCTATTAAAGCAAAGGATTTACGGGGTATGGATTTCGAGAAGGATCTGAGGGTCGAGGAGACAAACATTCCAGGACTGCTGGTGTTCGACCTGCCGGTGCACGGCGACAACCGTGGCTGGTTCAAGGAGAACTGGCAGCGCGCGAAGATGACCGCGCTAGGCCTGCCGGATTTCGGTCCGGTGCAGAACAACATCAGCTTCAATGCGAAGAAGGGCGTGACGCGAGGCATCCACGCGGAACCGTGGGACAAGTACATCTCGATCGCCACGGGCTCCGTGTTCGGTGCATGGGTGGACCTGCGTCCGGGCGAGAGCTTCGGCCAGGTGTACACGACCGTATTGGATCCATCGAAGGCGATCTACGTGCCGCGTGGCGTGGGCAACAGCTTCCAGGCGTTGGAGGACGGCACTGCGTACACGTATCTCGTGAACGCGCATTGGAGCCTCGAGCAGAAGAAGACGTACACGTTCGTGAACCTCGCCGACCCGGACCTGGACATCCAGTGGCCGATTCCGTTGGACGAGGCCGAACGCAGCGAGGCCGACCTGAAGCACCCGATGCTGAGGGACGCGAAGCCGATGGCGCCTAAGCGCACAATGGTTTTTGGATGCAACGGCAAACTCGGCAAGGCAATCAGGCAATATGCCGAAGATCATCATCTCGAAGGTTTTGAATATCACGACACAGACACCTTCGACATCTCCGATGCGCATGCTTTTGAAAATGTGGATTGGGATTTATACGGCACCATTATTAATGCCGCAGCTTTCACTGCCGTCGATGCTGCCGAAACAGCAGAGGGACGAAAAGCGGCATGGTTGACAAATGTCCAAGGCGTAAAGAACCTTGCTAAAGTCGCTACAGATCACAAAATCACCTTGGTTCATATTTCCAGTGATTACGTATTCGATGGCGAACTTGAATTCCACAAAGAAGACGAAGGCTTCGCGCCACTGGGGGTCTACGGACAGACCAAGGCCGCGGGTGATGCACTTGTGGAAAATGTCCCTCAGCATTATCTCTTGCGTTCTAGCTGGGTTATCGGTGAAGGGCGCAACTTTGTAACCCGCATGCTAGGTCTTGCGCAATCAGGCGAACCTGCAGAAGCGCCACGAGATCAATTCGGGCGTTTGACTTTCACCTTTGATATGGCAAATGCTATTTTCCATCTCCTGACGACCCATGCTGAATACGGTACTTATAACATGACTGGATCCGGCAAAGTTGCTAGCTGGTACGATATCGCAAAGATTGTTTACGAGACCGCAGAAGCTGATATATCTGCGCTTAAGGCAAATTCCGTCGAAGAATATGTTCAGAACACTCACGGTGCACTTCGCCCACGCAATTGTTCTCTGGATCTAAGCAAATTGGAATCCACCGGATATGCACCGGTTGACTGGGAAGAGGCTCTCCACGACTACCTCCAGAAGGAGATTGCAAAATGAAAGGCATCATTCTTGCTGGAGGATCCGGCACGAGGCTTTATCCTCTAACAACCGTCACTTCAAAGCAGCTTCTACCGGTTTATGACAAGCCGATGATCTATTACCCGCTCAGCGTGTTGATGATGGCTGGAATTCGTGACATTTTGATCATCAGCACTCCGAAAGATCTACCGAACTTTGAACGACTTTTGGGAGACGGTAGCCAGTATGGAGTCAATTTCAGTTACAAGGTTCAGCCGTCTCCGGATGGTCTGGCGCAAGCTTTCATCATCGGAGAAGATTTTATCGGAGGCGAACCCTGCGCACTTGTTCTTGGAGATAATATCTTCTATGGAAATGGTCTTGGCAAAACCTTGAGAAGAGCCGCCTCCGTCAAACACGGCGCTACTGTTTTCGGGTATTACGTTGATGATCCTGAACGTTACGGTGTTGTCGAGTTCGACAGTAACCATAAAGCGATATCGATAGTAGAAAAGCCCGAACATCCTGCTAGCAATTATGCTGTTACGGGTCTTTATTTTTACGATGCACGAGTCAGCGAGTTCGCCAAGCAGGTAAAGCCTTCTCCTCGCGGAGAACTCGAAATTACTGATTTGAACAAGATGTATCTAGAAGATAATAGCTTAAACGTCCAAACCTTGGGACGAGGCTATGCTTGGCTTGATACGGGAACAATGGATTCTCTGTTTGAAGCTGGAGAATTCGTGCGAACAATTCAGCATGCTCAGGGTCTTCCGATTGCAGTCGCAGAAGAAATCGCATTTGAAAATGGCTGGATCTCAGCAGAGCAACTTATGGAAGCTGCAATAAAGTATGGAAAATCCCCATATGGAAAGCATCTTAAAGATGTCGCAGACCATAAAATTATATCCCGTCCAAACGATGATCCGCAAATAACTGAATAATAATAAAAAATAGATCGCTGTTTCACGAAGCTCATGAAACAGCGATCTTTTTTATCAGCCTAATAACTAGCCCAATGAGTCGTCAAACTCCAAAGGCATAGGTCTTAGTCTCTACTAACTTCCCATTTGACGTATACAACTCAAAGTGAGTCCAATATATCCCTTTACTAGGTTTTTCCCAAACAGCCCACTGACCGTTAAAACCGGCGACCCATTGTTGCTTGTTTACGTCGTATATCTTAATCTTGTAACGTCCTTGAGCATTATCAGAGGATACTCCCAGCAAAACATCTTTTGACTGCCATCCCGCGTAAGTAGCATTGATCCGCTTGCTGCCCGGAACATATGCAAATGCGATGGTCTTTTCACCAACACTTGTCTTGGAAGCCGCATCGCGCACTTCAAGATGCAACCAATATGTTCCAACATCATCAGACCAGCCGGCCCAATTTGCACTATTCCAATTGGCGATGGTCTTCCATTTGCCCGTATTAACATTGTACGACTGCCACTTGTATTCAAGATCAGTGTACGGAGCATTCACAGATGCTCCAACTGCGATATCTTCATCTCTTACGACCCATAGCAGATTAATTAAGGATTCATACTCCTTATTCCCAAACGCATTCATGTCCACGTTGCCGCTGATGCCGTCCACCTTGCCGGTGCTGGTGTATTGCCATCCGCGACTGTTGGTCGGGAATGAGTCGAATCCCATGCGAGCGCCGTACTGCGCCACCCACGTGGTTTTGGCGTAAATGTCGGCATGTTTCAGCGGTCCTTGCAGGTAGCTGGTGTACGAGTAGACGCCCAGGTTCTTGTATCCGGCGGACTGTAGTGCGCTGTACCAATTGTTGACGATATTGTTGTACACGTTCGGGTCGGTGGGCGGCTGATGCCCTTCCCACGTCCACTTTTCCAGGTCGTAATACACGGGGTACGCCAGATCGCTCGGATTCACGCCAAACTGCTTGAGTTTGGCGACCACGTCGGCACCTTCTTCTTTGGCGAGCGCCGGAGTGTCCGCGTAGGAATACCAGTAGATGCCGAACGGGATGCCAAGTCTCTTGCATTCGGAAATGTTACGTTGCGCTTTCTTGTCGGCATTGTTGCCTTCGCCGTAGCCGAGGCGGATGATCGCGCCTTCCACGCCGTCGGCTTTCGCTTTGGCCCAATCGATGTCGCCTTGCCATTCGGAAACGTCAATCACGCCTTTGGCTTGCTGCACGAACAGGTTGTTCTGGTAGTCGAAGAAAGCTTTCGTATTGTTGTAGGTGCCCCAGTGCGCGCCGTATTCATTGCTTTCGAATTTGGAGAGCTGTACGTTCGCGTCGGCTACAGCATTTTTGACATCTTCCGCACTTACCGGAATGAAGGATTCGCCGTTGGTTTTGGCGAGCGGATCCGGCTGCTGATCTTTCGTGCCGACCAATGTTGGATCGGTCACGATTTCGCCGGTTTCGATGTTCTTGACCTCACCTTCGGGGGTGACAGCCAGGTCTTCCGAAATCACGGTGGCATCGTCGGAAATCTCGTCACTGACGTTATCCGGAAGTTTCGCATTCGGATTGTCAGGCATGCTGTCTTGCGATTGCTGGCCGCCCGTCTGATCATCCGACTGATCGTCAGACTGCATAACAACACCATTATCTGCAGTAACGGAACCGCTTTGCGCAACAGCATCCTCAATCGCAATATCCTGCAATGCGTAAGCCGGCGCAACCGCAACGGAAGCAGTCAACGCAACCGCAGACAGCGCAGTCGCAATCTTCACAACATGATGTGGCGAAACCAT

Protein sequences of DBSCAN-SWA_1

>NZ_AP012330|2019909:2028782|2022608_2023445_-|WP_033524324.1|DBSCAN-SWA
MAKKILVTGAGGYIGRHVVSALLDAGQDVIASDLRLDGVDERATKVQANIFEPNDDLFEELGAPDVCLHMAWRDGFKHNSDNHMGDLSNHYRFLKHMLDSGLKQIAVMGTMHEVGYWEGAIDENTPCHPASMYGIAKNALREATLMLAKEYDATAQWIRAYYIVGDDAHGSSIFSKLLQAANDGKATFPFTTGKNKYDFIDVDELAGQISAVVSQDAVDGVINCCTGEPMTLAERVERYIKENDLNIKLDYGVFPDRPYDSPGVWGDASKIKQILKNQ
>NZ_AP012330|2019909:2028782|2024660_2026082_+|WP_004223110.1|DBSCAN-SWA
MDFEKDLRVEETNIPGLLVFDLPVHGDNRGWFKENWQRAKMTALGLPDFGPVQNNISFNAKKGVTRGIHAEPWDKYISIATGSVFGAWVDLRPGESFGQVYTTVLDPSKAIYVPRGVGNSFQALEDGTAYTYLVNAHWSLEQKKTYTFVNLADPDLDIQWPIPLDEAERSEADLKHPMLRDAKPMAPKRTMVFGCNGKLGKAIRQYAEDHHLEGFEYHDTDTFDISDAHAFENVDWDLYGTIINAAAFTAVDAAETAEGRKAAWLTNVQGVKNLAKVATDHKITLVHISSDYVFDGELEFHKEDEGFAPLGVYGQTKAAGDALVENVPQHYLLRSSWVIGEGRNFVTRMLGLAQSGEPAEAPRDQFGRLTFTFDMANAIFHLLTTHAEYGTYNMTGSGKVASWYDIAKIVYETAEADISALKANSVEEYVQNTHGALRPRNCSLDLSKLESTGYAPVDWEEALHDYLQKEIAK
>NZ_AP012330|2019909:2028782|2027069_2028782_-|WP_004223106.1|DBSCAN-SWA
MVSPHHVVKIATALSAVALTASVAVAPAYALQDIAIEDAVAQSGSVTADNGVVMQSDDQSDDQTGGQQSQDSMPDNPNAKLPDNVSDEISDDATVISEDLAVTPEGEVKNIETGEIVTDPTLVGTKDQQPDPLAKTNGESFIPVSAEDVKNAVADANVQLSKFESNEYGAHWGTYNNTKAFFDYQNNLFVQQAKGVIDVSEWQGDIDWAKAKADGVEGAIIRLGYGEGNNADKKAQRNISECKRLGIPFGIYWYSYADTPALAKEEGADVVAKLKQFGVNPSDLAYPVYYDLEKWTWEGHQPPTDPNVYNNIVNNWYSALQSAGYKNLGVYSYTSYLQGPLKHADIYAKTTWVAQYGARMGFDSFPTNSRGWQYTSTGKVDGISGNVDMNAFGNKEYESLINLLWVVRDEDIAVGASVNAPYTDLEYKWQSYNVNTGKWKTIANWNSANWAGWSDDVGTYWLHLEVRDAASKTSVGEKTIAFAYVPGSKRINATYAGWQSKDVLLGVSSDNAQGRYKIKIYDVNKQQWVAGFNGQWAVWEKPSKGIYWTHFELYTSNGKLVETKTYAFGV
>NZ_AP012330|2019909:2028782|2023556_2024579_+|WP_004223113.1|DBSCAN-SWA
MAEETFTPKNIIVTGGCGFIGSNFVHYVVDNHPDVHVTVLDALTYAGNIENIAGLPEDRVEFVHGNICDAELLDRIVPGHDAIVHYAAESHNDNSIADPEPFLKTNVEGTFRLLEAVRRYGIRYHHVSTDEVYGDLALDDPAKFTERTPYHPSSPYSSTKAASDMLVRAWTRTYGIRATISNCSNNYGPYQHVEKFIPRQITNILDGQRPKLYGKGENVRDWIHTEDHSSGVWTILTKGRIGETYLIGANGEKNNITVLRMILKMMGQPEDAFDWVKDRPGHDRRYAIDSTKLRTELGWTPTHTDFESGLKTTIDWYTDNRQWWEPAKAATEAKYKQQGQ
>NZ_AP012330|2019909:2028782|2026078_2026987_+|WP_004223109.1|DBSCAN-SWA
MKGIILAGGSGTRLYPLTTVTSKQLLPVYDKPMIYYPLSVLMMAGIRDILIISTPKDLPNFERLLGDGSQYGVNFSYKVQPSPDGLAQAFIIGEDFIGGEPCALVLGDNIFYGNGLGKTLRRAASVKHGATVFGYYVDDPERYGVVEFDSNHKAISIVEKPEHPASNYAVTGLYFYDARVSEFAKQVKPSPRGELEITDLNKMYLEDNSLNVQTLGRGYAWLDTGTMDSLFEAGEFVRTIQHAQGLPIAVAEEIAFENGWISAEQLMEAAIKYGKSPYGKHLKDVADHKIISRPNDDPQITE
>NZ_AP012330|2019909:2028782|2019909_2020863_-|WP_033524322.1|DBSCAN-SWA
MTLPVVYFVLPCYNESEGLRHTADVLKKKINQLIACDGISGKSRILFVDDGSKDGTWDLIQQLHYEDEALFGGVKLAHNRGHQSALYAGLMQALRDGCDAAISMDADLQDDVNAVDEMVKKFSQEHCEIVYGVRSSREKDSWFKRNSALMFYRVFEWMGAETVPNHADYRLMSRLALEALSEYHEVNLFLRGIVPSIGFKTGKVYYVRGVREAGESKYPLKKMIAFALEGITSFSTKPLKFVTGLGVISILIGLIMLAYAIGSVFMNHAVVGWGSMMCSIWLIGGFLMVSMGIVGEYVGKIYLETKHRPRYYIETAF
>NZ_AP012330|2019909:2028782|2020952_2022593_-|WP_080550632.1|DBSCAN-SWA
MTCASTTEQTIDSIAKGKRKNSGEKSVDSTTSTFPLERQYTVRGFMRFLRMNPWDMVLSTFLLLMGYELKMFGNSYSIDTEAMIQVQSSLYRSWIGLERFGLLLLKKMLGLYWYNNALASFLTAVCLLVAALLWAYLFSGVTNFIGKYHPVYFVGPFVTSPVLAEMLGFSLMGAEVGIAIGFAAIALMCLMDFVVSKKWWMGFLTVLFATVSFSLYLAMVTVFIAGFAMVFILLFWDNSKFTLARRFVFIGVGAGFFCISYLLYVVANVCALKICHMTTNPYISEQSRWGKDSVHHILQSISLHAASLYSGKGIYYSKVFTCLLALFIVIILISVFRHKVDVLTLIVSLCLCLSPMMMSIILGSAPSVRTEMSYPLMFAFAVVFLVMWTSDLFNGKIAVKYVAVVLAFILSWSQALIVNRIFYTEAINHQQDAELAQDIRNRIDELGVTDQSKETLVFLNYHPSACNSDCFTSDQLGLVGRSLFEVTVSPEQGTFVKTNFMNIMGNKFKQASKPQLQSAEKVGAAMPHWPAPGSVAKKGDLIIVNF

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033524322.1|2019909_2020863_-	glycosyltransferase family 2 protein	A8CG95	Salmonella_phage	5.8e-40	34.4
WP_080550632.1|2020952_2022593_-	glucosyltransferase domain-containing protein	C9E2L4	Enterococcus_phage	1.6e-13	21.3
WP_033524324.1|2022608_2023445_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_004223113.1|2023556_2024579_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.4e-78	48.2
WP_004223110.1|2024660_2026082_+	sugar nucleotide-binding protein	A0A291LA50	Escherichia_phage	9.3e-18	30.6
WP_004223109.1|2026078_2026987_+	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	5.3e-99	62.3
WP_004223106.1|2027069_2028782_-	1,4-beta-N-acetylmuramidase	A0A1U9WQS3	Geobacillus_phage	4.3e-17	35.1