CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP010867	Streptococcus agalactiae strain SS1 chromosome, complete genome	2 crisprs	cas3,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	1	5	5	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010867_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010867_1

941625-941990

TypeII

II-A

Consensus_repeat	Method
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CRISPRCasFinder
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CRT

5 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_CP010867_1

>merge|NZ_CP010867|1|941625-941990|CRISPRCasFinder,CRT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAACATTAGCCTTTTCTAACTCTTCAGCTGTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTATGTCTTCTAACAGTTGCTTCTTGTGCTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCCGTCAAACAAGAGCGACAGCGAAACAAGCGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTACTTGACGAATTGAAGATGACGGAATTTAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCA

>NZ_CP010867|1|1|941625-941924|CRISPRCasFinder
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AACATTAGCCTTTTCTAACTCTTCAGCTGT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TATGTCTTCTAACAGTTGCTTCTTGTGCTT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CCGTCAAACAAGAGCGACAGCGAAACAAGC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TACTTGACGAATTGAAGATGACGGAATTTA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC

>NZ_CP010867|1|1|941625-941990|CRT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AACATTAGCCTTTTCTAACTCTTCAGCTGT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TATGTCTTCTAACAGTTGCTTCTTGTGCTT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CCGTCAAACAAGAGCGACAGCGAAACAAGC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TACTTGACGAATTGAAGATGACGGAATTTA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAGCTAATTCTCATCTCACCGAGATGGATA
GTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010867.1\|WP_000438314.1\|942547_942964_+\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
NZ_CP010867.1\|WP_001019133.1\|943099_944932_+\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NZ_CP010867.1\|WP_000192686.1\|956436_957135_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP010867.1\|WP_000665410.1\|949043_949478_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|234692
NZ_CP010867.1\|WP_000590706.1\|940858_941524_+\|type-II-A-CRISPR-associated-protein-Csn2	csn2	pfam09711_csn2_CAS-II-A	gnl\|CDD\|213408
NZ_CP010867.1\|WP_000323544.1\|933746_934517_+\|TIGR01457-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319832
NZ_CP010867.1\|WP_000159234.1\|931006_931378_+\|YbgA-family-protein	unknown	unknown	gnl\|CDD\|377982
NZ_CP010867.1\|WP_000621142.1\|948579_949044_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP010867.1\|WP_001040087.1\|935550_939663_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|273840
NZ_CP010867.1\|WP_000065321.1\|952421_953525_+\|DUF2974-domain-containing-protein	unknown	unknown	gnl\|CDD\|371412
NZ_CP010867.1\|WP_000653357.1\|934506_935163_+\|TIGR01906-family-membrane-protein	unknown	unknown	gnl\|CDD\|226884
NZ_CP010867.1\|WP_041970307.1\|953645_954227_-\|CatB-related-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100040
NZ_CP010867.1\|WP_000929489.1\|939664_940534_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP010867.1\|WP_000180007.1\|947911_948571_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224336
NZ_CP010867.1\|WP_001241816.1\|931402_931783_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131381
NZ_CP010867.1\|WP_001056394.1\|954994_955606_+\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
NZ_CP010867.1\|WP_000523795.1\|933008_933746_+\|acyl-ACP-thioesterase	unknown	unknown	gnl\|CDD\|366738
NZ_CP010867.1\|WP_029140793.1\|940530_940872_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP010867.1\|WP_000467138.1\|955642_956425_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010867.1\|WP_000914664.1\|931874_933005_+\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309

Protein	Function_ID	Function_description	E-value
NZ_CP010867.1\|WP_000438314.1\|942547_942964_+\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	4.64422e-78
NZ_CP010867.1\|WP_001019133.1\|943099_944932_+\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_CP010867.1\|WP_000192686.1\|956436_957135_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.55032e-60
NZ_CP010867.1\|WP_000665410.1\|949043_949478_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	6.40832e-86
NZ_CP010867.1\|WP_000590706.1\|940858_941524_+\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.61399e-122
NZ_CP010867.1\|WP_000323544.1\|933746_934517_+\|TIGR01457-family-HAD-type-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.19143e-132
NZ_CP010867.1\|WP_000159234.1\|931006_931378_+\|YbgA-family-protein	gnl\|CDD\|377982	pfam08349, DUF1722, Protein of unknown function (DUF1722). This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from E. coli.	6.08694e-28
NZ_CP010867.1\|WP_000621142.1\|948579_949044_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.91796e-19
NZ_CP010867.1\|WP_001040087.1\|935550_939663_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|273840	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.	0
NZ_CP010867.1\|WP_000065321.1\|952421_953525_+\|DUF2974-domain-containing-protein	gnl\|CDD\|371412	pfam11187, DUF2974, Protein of unknown function (DUF2974). This bacterial family of proteins has no known function.	1.82724e-105
NZ_CP010867.1\|WP_000653357.1\|934506_935163_+\|TIGR01906-family-membrane-protein	gnl\|CDD\|226884	COG4478, COG4478, Predicted membrane protein [Function unknown].	9.75792e-52
NZ_CP010867.1\|WP_041970307.1\|953645_954227_-\|CatB-related-O-acetyltransferase	gnl\|CDD\|100040	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.	1.12772e-70
NZ_CP010867.1\|WP_000929489.1\|939664_940534_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.54315e-139
NZ_CP010867.1\|WP_000180007.1\|947911_948571_+\|HD-domain-containing-protein	gnl\|CDD\|224336	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only].	2.66997e-33
NZ_CP010867.1\|WP_001241816.1\|931402_931783_+\|hypothetical-protein	gnl\|CDD\|131381	TIGR02328, TIGR02328, conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown. [Hypothetical proteins, Conserved].	6.45558e-80
NZ_CP010867.1\|WP_001056394.1\|954994_955606_+\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	6.1265e-31
NZ_CP010867.1\|WP_000523795.1\|933008_933746_+\|acyl-ACP-thioesterase	gnl\|CDD\|366738	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase. This family consists of various acyl-acyl carrier protein (ACP) thioesterases (TE) these terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid.	3.68196e-111
NZ_CP010867.1\|WP_029140793.1\|940530_940872_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.09513e-51
NZ_CP010867.1\|WP_000914664.1\|931874_933005_+\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0

>NZ_CP010867.1|WP_000590706.1|940858_941524_+|type-II-A-CRISPR-associated-protein-Csn2
MIKINFPILDEPLVLSNATILTIEDVSVYSSLVKHFYQYDVDEHLKLFDDKQKSLKATELMLVTDILGYDVNSAPILKLIHGDLENQFNEKPEVKSMVEKLAATITELIAFECLENELDLEYDEITILELIKALGVKIETQSDTIFEKCFEIIQVYHYLTKKNLLVFVNSGAYLTKDEVIKLCEYINLMQKSVLFLEPRRLYDLPQYVIDKDYFLIGENMV
>NZ_CP010867.1|WP_029140793.1|940530_940872_+|CRISPR-associated-endonuclease-Cas2
MSYRYMRMILMFDMPTETAEERKAHRKFRKFLLSEGFIMHQFSVYSKLLLNNTANNAMIGRLKVNNPKKGNITLLTVTEKQFARMVYLHGERNTSVANSDSRLVFLGDSYDQD
>NZ_CP010867.1|WP_000929489.1|939664_940534_+|type-II-CRISPR-associated-endonuclease-Cas1
MAGWRTVVVNTHSKLSYKNNHLIFKDSYQTEMIHLSEIDILIMETTDIVLSTMLIKRLVDENILVIFCDDKRLPTAMLMPYYARHDSSLQLSRQMSWIEDVKADVWTSIIAQKILNQSFYLGECSFFEKSQSIMNLYHDLEPFDPSNREGHAARIYFNTLFGNDFSREQDNPINAGLDYGYSLLLSMFAREVVKCGCMTQFGLKHANQFNQFNLASDIMEPFRPIVDRIIYENRQSDFVKMKRELFSMFSETYSYNGKEMYLSNIVSDYTKKVIKSLNSDGNGIPEFRI
>NZ_CP010867.1|WP_001040087.1|935550_939663_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MNKPYSIGLDIGTNSVGWSIITDDYKVPAKKMRVLGNTDKEYIKKNLIGALLFDGGNTAADRRLKRTARRRYTRRRNRILYLQEIFAEEMSKVDDSFFHRLEDSFLVEEDKRGSKYPIFATLQEEKDYHEKFSTIYHLRKELADKKEKADLRLIYIALAHIIKFRGHFLIEDDSFDVRNTDISKQYQDFLEIFNTTFENNDLLSQNVDVEAILTDKISKSAKKDRILAQYPNQKSTGIFAEFLKLIVGNQADFKKYFNLEDKTPLQFAKDSYDEDLENLLGQIGDEFADLFSAAKKLYDSVLLSGILTVIDLSTKAPLSASMIQRYDEHREDLKQLKQFVKASLPEKYQEIFADSSKDGYAGYIEGKTNQEAFYKYLSKLLTKQEDSENFLEKIKNEDFLRKQRTFDNGSIPHQVHLTELKAIIRRQSEYYPFLKENQDRIEKILTFRIPYYIGPLAREKSDFAWMTRKTDDSIRPWNFEDLVDKEKSAEAFIHRMTNNDFYLPEEKVLPKHSLIYEKFTVYNELTKVRYKNEQGETYFFDSNIKQEIFDGVFKEHRKVSKKKLLDFLAKEYEEFRIVDVIGLDKENKAFNASLGTYHDLEKILDKDFLDNPDNESILEDIVQTLTLFEDREMIKKRLENYKDLFTESQLKKLYRRHYTGWGRLSAKLINGIRDKESQKTILDYLIDDGRSNRNFMQLINDDGLSFKSIISKAQAGSHSDNLKEVVGELAGSPAIKKGILQSLKIVDELVKVMGYEPEQIVVEMARENQTTNQGRRNSRQRYKLLDDGVKNLASDLNGNILKEYPTDNQALQNERLFLYYLQNGRDMYTGEALDIDNLSQYDIDHIIPQAFIKDDSIDNRVLVSSAKNRGKSDDVPSLEIVKDCKVFWKKLLDAKLMSQRKYDNLTKAERGGLTSDDKARFIQRQLVETRQITKHVARILDERFNNELDSKGRRIRKVKIVTLKSNLVSNFRKEFGFYKIREVNNYHHAHDAYLNAVVAKAILTKYPQLEPEFVYGDYPKYNSYKTRKSATEKLFFYSNIMNFFKTKVTLADGTVVVKDDIEVNNDTGEIVWDKKKHFATVRKVLSYPQNNIVKKTEIQTGGFSKESILAHGNSDKLIPRKTKDIYLDPKKYGGFDSPIVAYSVLVVADIKKGKAQKLKTVTELLGITIMERSRFEKNPSAFLESKGYLNIRADKLIILPKYSLFELENGRRRLLASAGELQKGNELALPTQFMKFLYLASRYNESKGKPEEIEKKQEFVNQHVSYFDDILQLINDFSKRVILADANLEKINKLYQDNKENISVDELANNIINLFTFTSLGAPAAFKFFDKIVDRKRYTSTKEVLNSTLIHQSITGLYETRIDLGKLGED
>NZ_CP010867.1|WP_000653357.1|934506_935163_+|TIGR01906-family-membrane-protein
MKDKLLVVLTWIWIISLATLATIYIAWLIYPIEIQFLKLEKVVYLKAETIYYNFNKLMIYLTHPFISDLNMPSFPSSEDGLKHFADVKYLFTLAHGLFVILTFPVIYFLRRGWKQKSIFLYEGFFKIAIMLPIFIVVCAFLLGFDQFFTLFHEVLFPGDSTWQFNPLTDPVIWILPETFFLHCFIIFLLIYETITIILLIIGRKHLKLRKYKNKMQAL
>NZ_CP010867.1|WP_000323544.1|933746_934517_+|TIGR01457-family-HAD-type-hydrolase
MAYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVETPLETIYTATMATVDYMNDMNRGKTAYVIGEEGLKKAIADAGYVEDTKNPAYVVVGLDWNVTYDKLATATLAIQNGALFIGTNPDLNIPTERGLLPGAGSLNALLEAATRIKPVFIGKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGINNDIDTLLVTTGFTTVEEVPDLPIQPSYVLASLDEWTFNEG
>NZ_CP010867.1|WP_000523795.1|933008_933746_+|acyl-ACP-thioesterase
MGLLYRETYEVPFYESDTNHYMKLPQLLALALQISAKQSLKLGIGDDIVFKRYGLVWVVTDYIIDIERLPKHAEKIVIETEAKAHNKLLCYRYFYIYGEDGQKIITISSAFVLMDFKTRKIHPVLDDITSIYQSQRIKKVIRGPKYHPIGDSKVKQYHVRYFDLDMNGHVNNSKYLEWMYDVLDLDFLSSHIPKKIDLKYIKEIQYGTDIKSHWYQDGLVTRHDIIGGDAIHAQARIEWQEKKED
>NZ_CP010867.1|WP_000914664.1|931874_933005_+|oxygen-independent-coproporphyrinogen-III-oxidase
MLKKPTSAYVHIPFCTQICYYCDFSKVFIKNQPVDAYLQALIREFRSYDITELRTLYIGGGTPTSISAVQLDYLLTELSRDLNLNTLEEFTIEANPGDLTVDKIEVLQKSAVNRVSLGVQTFNDKHLKRIGRSHNEAQIYSTIDALKTAGFQNISIDLIYALPGQTMDDVRSNVAKALSLNIPHLSLYSLILEHHTVFMNKMRRGKLHLPTEDLEAEMFEYIISEMERNGFEHYEISNFTKPGFESRHNLMYWDNVEYYGVGAGASGYLDGIRYRNRGPIQHYLKGVSEGNARLSEEVLSKNEMMEEELFLGLRKKEGVSIGKFEQKFGTSFEKRYGQIVQELQSDGLLKENNGFIQMTKKGLFLGDTVAEKFIVE
>NZ_CP010867.1|WP_001241816.1|931402_931783_+|hypothetical-protein
MRLWHQDIIELLPRQQLLGQHRECCALRGNGWGRKHETVDYVFRYSPYRLFAYHQLVMEEMMERGYRVSKEWLIAEYRGMKCPRYDTLNPVDLETPIYPEHNQDYLQECLWNLKAKGIDLPINKIK
>NZ_CP010867.1|WP_000159234.1|931006_931378_+|YbgA-family-protein
MTKEAELLWAKHKYLVLSKSQKIYLDIRQTLKSPNCTVLDVQSLIDQAVLLEESPSQVTNAYMHIWGYFKNKAERQEKEEFLTLLEKYRKTGYQRRKLLAFLKQLLAKYPNSYLQNSSIFEEE
>NZ_CP010867.1|WP_000438314.1|942547_942964_+|nucleoside-diphosphate-kinase
MEQTFFMIKPDGVKRGFIGEVISRIERRGFSIDRLEVRYADADILKRHYAELTDRPFFPTLVDYMTSGPVIIGVISGEEVISTWRTMMGSTNPKDALPGTIRGDFAQAPSPNQATCNIVHGSDSPESATREIAIWFNN
>NZ_CP010867.1|WP_001019133.1|943099_944932_+|elongation-factor-4
MNIEDLKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSREMQAQLLDSMDLERERGITIKLNAIELNYTAKDGETYIFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVRAEVEDVIGLDASEAVLASAKAGIGIEEILEQIVEKVPAPTGEVDAPLQALIFDSVYDAYRGVILQVRIVNGMVKPGDKIQMMSNGKTFDVTEVGIFTPKAVGRDFLATGDVGYIAASIKTVADTRVGDTITLANNPAIEPLHGYKQMNPMVFAGLYPIESNKYNDLREALEKLQLNDASLQFEPETSQALGFGFRCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVYHVNTTDGEMLEVSNPSEFPDPTRVDSIEEPYVKAQIMVPQEFVGAVMELAQRKRGDFVTMDYIDDNRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYEISEYRRSQLVKMDILLNGDKVDALSFIVHKEFAYERGKLIVDKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKAGKKRMKAIGSVEVPQEAFLSVLSMDDDDKK
>NZ_CP010867.1|WP_000180007.1|947911_948571_+|HD-domain-containing-protein
MTMVKREDVILNATENMVHHKLKNDPSGHDWFHIVRVRNLAVELAHKEGANTFICQMAALLHDIIDDKICQDSKQASYELTQWLYSQDLAIAEVEHILDILENISFKAGTGLTMKTLEGQIVQDADRLDAMGAIGIARTMAYSGSKGRLIHDPNLKPRENLTLEEYRNGQDTAIMHFYEKLLKLKDLMNTKQGKMLAQKRHDFLELYLAEFYAEWNGKR
>NZ_CP010867.1|WP_000621142.1|948579_949044_+|GNAT-family-N-acetyltransferase
MIRRAKEKDLPDIAELLKQILMLHHEVRPDIFHTRGSKFSKEQLKEMLIDESKPIFVYESDEGKVVAHLFLQLQEKRDLPRKSFKTLYIDDLCIDEEVRGQQIGQKLMDFARQYAKKHGCYNITLNVWNDNQRAVSFYEKLGFKPQQTQMEEIL
>NZ_CP010867.1|WP_000665410.1|949043_949478_+|peptide-methionine-(R)-S-oxide-reductase-MsrB
MKETQEELRQRIGHTAYQVTQNSATEHAFTGKYDDFFEEGIYVDIVSGEVLFSSLDKFQSGCGWPAFSKPIENRMVTNHQDHSHGMHRIEVRSRQADSHLGHVFNDGPVDAGGLRYCINSAALDFIPYDQMAKRGYGDYLSLFD
>NZ_CP010867.1|WP_000065321.1|952421_953525_+|DUF2974-domain-containing-protein
MSNIITYLKNNSNLTFDELALNDVDILCLNEFGYISFEKLINTTEMKSVLVCELYHEYLQTMAKSYSFMFTSQRHDLCQLMMTSKRFKNLTLSYYRAEISLEFEKQFAAMVFTIPNINYHQVVFRGTDANLIGWKEDFKLTYMREISAHRSAIKYLNTILPYFDKVVLSGHSKGGNLALYAAMFTKPDLKAKIDLIWLIDSPGLQKTLLPTTEYKTTKQKCIRLLPEESIVGMMLYSDIEPLIISSNARGILQHDVTTWEIQEPAILKTGTGLSLKSICFEKTFQQWMAELKSQERKLFFDLLFDSFLSSGVSSLDDFNLASRAKMMKAFHSFRELDDDKKRLFNKSLKLLVTIFWGAYHDNSRETK
>NZ_CP010867.1|WP_041970307.1|953645_954227_-|CatB-related-O-acetyltransferase
MRTDMSTGASYPKYGFSVGKYTYGYQQFFYEGVNLKEIGAFCSIAQNVTITGLNHPTDHITTNPFIYYKSRGFINEDRADLIDEKKNGKVIIGNDVWIGTNVTILPSVTIGNGAIIGAGSVITKDIPDYAVVAGTPAKIIKYRFSEEEITLLNASQWWNWSDEAIKEHISEFSDKKEFFNTLKSISENKNHKL
>NZ_CP010867.1|WP_001056394.1|954994_955606_+|TVP38/TMEM64-family-protein
MNMKLSKRYRFWQKVIKALGVLALIATLVLVVYLYKLGILNDSNELKDLVHKYEFWGPMIFIVAQIVQIVFPVIPGGVTTVAGFLIFGPTLGFIYNYIGIIIGSVILFWLVKFYGRKFVLLFMDQKTFDKYESKLETSGYEKFFIFCMASPISPADIMVMITGLSNMSIKRFVTIIMITKPISIIGYSYLWIYGGDILKNFLN
>NZ_CP010867.1|WP_000467138.1|955642_956425_-|hypothetical-protein
MFGKLLKYELKSVGKWYLTLNAAVLLVSIILGLVLKALGGNFSTDTNSTSAQIFTIILVLLLAMVISGSLLSTLAIIIKRFYSNIFGRQGYLTLTLPVTTNQIICSKLLASLLWSIFNIFIVIIGIILVILPLVGIGQFVVAFPEIYKIISSSNAPLFIAYFFLSYVAGTLLIYLSIAVGQLFTNKRVLMGIVSYFGISLLITFLTLIIDSIFHIDLFNSHANATFSQPVLLYNILVSIVEIAIFYMLTHSIIKYKLNIQ
>NZ_CP010867.1|WP_000192686.1|956436_957135_-|ABC-transporter-ATP-binding-protein
MTQLLQLHHVTKKYHKHTAVNDVTVSIPTGKIIGLLGPNGSGKTTIIKMINGLLQPDKGDIVIDGYRPSVETKKIISYLPDTSYLQENMKIKDVVTLFEDFYNDFDSKVAYQLFEDLNLNPRERLKNLSKGNKEKVQLILVMSRKARLYILDEPIGGVDPAARDYILKTIISNYSNDASVLISTHLISDIEPILDEVIFLKEGEIDLQGNADDLREEHNCSIDALFRERFKK

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Crispr_ID: NZ_CP010867_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010867_2

1959987-1960448

Orphan

Consensus_repeat	Method
CTGGTTTGGCNTCTGGNT	CRT

7 spacers

The CRISPR arrays of NZ_CP010867_2

>merge|NZ_CP010867|2|1959987-1960448|CRT
CTGGTTTAGCCTCTGGCTTAACGTCTGGTTTAACTTCTGGCTTAGCCTCTGGTTTGGCCTCTGGCTTAACGTCTGGTTTAACTTCTGGCTTAGCCTCTGGTCTGGCCTCTGGCTTAACGTCTGGTTTAACTTCTGGCTTAGCCTCTGGTTTAACTTCTGGCTTAACGTCTGGCTTAGCTTCTGGCTTAACGTCTGGTTTGGCTTCTGGCTTAACGTCTGGTTTAACTTCTGGCTTAACGTCTGGTTTGGCTTCTGGCTTAACGTCTGGTTTGGCCTCTGGCTTAACGTCTGGTTTAACTTCTGGCTTAGCCTCTGGTTTGGCTTCTGGTTTGGCCTCTGGTTTGGCTTCTGGTTTGGCCTCTGGTTTGGCTTCTGGCTTAGCTTCTGGCTTAACGTCTGGCTTAACATCTGGTTTGGCTTCTGGTTTAACTTCTGGCTTAGCTTCTGGTTTGGCTACTTTTT

>NZ_CP010867|2|2|1959987-1960448|CRT
CTGGTTTAGCCTCTGGCT	TAACGTCTGGTTTAACTTCTGGCTTAGCCTCTGGTTTGGCCTCTGGCTTAACGTCTGGTTTAACTTCTGGCTTAGCCT
CTGGTCTGGCCTCTGGCT	TAACGTCTGGTTTAACTTCTGGCTTAGCCTCTGGTTTAACTTCTGGCTTAACGTCTGGCTTAGCTTCTGGCTTAACGT
CTGGTTTGGCTTCTGGCT	TAACGTCTGGTTTAACTTCTGGCTTAACGTCTGGTTTGGCTTCTGGCTTAACGT
CTGGTTTGGCCTCTGGCT	TAACGTCTGGTTTAACTTCTGGCTTAGCCTCTGGTTTGGCTT
CTGGTTTGGCCTCTGGTT	TGGCTTCTGGTTTGGCCT
CTGGTTTGGCTTCTGGCT	TAGCTTCTGGCTTAACGTCTGGCTTAACAT
CTGGTTTGGCTTCTGGTT	TAACTTCTGGCTTAGCTT
CTGGTTTGGCTACTTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010867.1\|WP_000497678.1\|1962548_1962722_-\|preprotein-translocase-subunit-SecE	unknown	unknown	gnl\|CDD\|223762
NZ_CP010867.1\|WP_000953628.1\|1958061_1958907_-\|patatin-family-protein	unknown	unknown	gnl\|CDD\|132847
NZ_CP010867.1\|WP_000459240.1\|1966232_1967873_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226987
NZ_CP010867.1\|WP_001093374.1\|1946083_1950799_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173801
NZ_CP010867.1\|WP_000903269.1\|1953195_1953804_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010867.1\|WP_000887149.1\|1959044_1959584_-\|transcription-termination/antitermination-protein-NusG	unknown	unknown	gnl\|CDD\|180161
NZ_CP010867.1\|WP_000610952.1\|1944755_1945079_-\|AzlD-domain-containing-protein	unknown	unknown	gnl\|CDD\|226827
NZ_CP010867.1\|WP_000764812.1\|1962958_1965280_-\|penicillin-binding-protein	unknown	unknown	gnl\|CDD\|223815
NZ_CP010867.1\|WP_000410672.1\|1945068_1945761_-\|AzlC-family-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224215
NZ_CP010867.1\|WP_001125582.1\|1972181_1972919_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP010867.1\|WP_000010477.1\|1965323_1966208_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP010867.1\|WP_029550610.1\|1956771_1958019_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP010867.1\|WP_000161343.1\|1951031_1951718_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP010867.1\|WP_001159688.1\|1970021_1971224_-\|NupC/NupG-family-nucleoside-CNT-transporter	unknown	unknown	gnl\|CDD\|224883
NZ_CP010867.1\|WP_000145177.1\|1953893_1956395_-\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_CP010867.1\|WP_000453154.1\|1969320_1969992_-\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|234784
NZ_CP010867.1\|WP_000057521.1\|1962757_1962910_-\|50S-ribosomal-protein-L33	unknown	unknown	gnl\|CDD\|234783
NZ_CP010867.1\|WP_000730416.1\|1951714_1953103_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP010867.1\|WP_001182060.1\|1971244_1972024_-\|uridine-phosphorylase	unknown	unknown	gnl\|CDD\|350167
NZ_CP010867.1\|WP_000077187.1\|1968042_1969254_-\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430

Protein	Function_ID	Function_description	E-value
NZ_CP010867.1\|WP_000497678.1\|1962548_1962722_-\|preprotein-translocase-subunit-SecE	gnl\|CDD\|223762	COG0690, SecE, Preprotein translocase subunit SecE [Intracellular trafficking and secretion].	5.81702e-09
NZ_CP010867.1\|WP_000953628.1\|1958061_1958907_-\|patatin-family-protein	gnl\|CDD\|132847	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.	5.90358e-122
NZ_CP010867.1\|WP_000459240.1\|1966232_1967873_-\|hypothetical-protein	gnl\|CDD\|226987	COG4640, COG4640, Predicted membrane protein [Function unknown].	3.13723e-08
NZ_CP010867.1\|WP_001093374.1\|1946083_1950799_+\|S8-family-serine-peptidase	gnl\|CDD\|173801	cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	3.28365e-89
NZ_CP010867.1\|WP_000887149.1\|1959044_1959584_-\|transcription-termination/antitermination-protein-NusG	gnl\|CDD\|180161	PRK05609, nusG, transcription antitermination protein NusG; Validated.	3.00072e-83
NZ_CP010867.1\|WP_000610952.1\|1944755_1945079_-\|AzlD-domain-containing-protein	gnl\|CDD\|226827	COG4392, COG4392, Predicted membrane protein [Function unknown].	3.50446e-14
NZ_CP010867.1\|WP_000764812.1\|1962958_1965280_-\|penicillin-binding-protein	gnl\|CDD\|223815	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].	0
NZ_CP010867.1\|WP_000410672.1\|1945068_1945761_-\|AzlC-family-ABC-transporter-permease	gnl\|CDD\|224215	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism].	2.08703e-51
NZ_CP010867.1\|WP_001125582.1\|1972181_1972919_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	6.94122e-33
NZ_CP010867.1\|WP_000010477.1\|1965323_1966208_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	1.5846e-84
NZ_CP010867.1\|WP_029550610.1\|1956771_1958019_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.35103e-68
NZ_CP010867.1\|WP_000161343.1\|1951031_1951718_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	8.44527e-63
NZ_CP010867.1\|WP_001159688.1\|1970021_1971224_-\|NupC/NupG-family-nucleoside-CNT-transporter	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	3.49248e-155
NZ_CP010867.1\|WP_000145177.1\|1953893_1956395_-\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_CP010867.1\|WP_000453154.1\|1969320_1969992_-\|deoxyribose-phosphate-aldolase	gnl\|CDD\|234784	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional.	3.25832e-110
NZ_CP010867.1\|WP_000057521.1\|1962757_1962910_-\|50S-ribosomal-protein-L33	gnl\|CDD\|234783	PRK00504, rpmG, 50S ribosomal protein L33; Validated.	2.53308e-18
NZ_CP010867.1\|WP_000730416.1\|1951714_1953103_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	5.77969e-46
NZ_CP010867.1\|WP_001182060.1\|1971244_1972024_-\|uridine-phosphorylase	gnl\|CDD\|350167	cd17767, UP_EcUdp-like, uridine phosphorylases similar to Escherichia coli Udp and related phosphorylases. Uridine phosphorylase (UP) is specific for pyrimidines, and is involved in pyrimidine salvage and in the maintenance of uridine homeostasis. In addition to E. coli Udp, this subfamily includes Shewanella oneidensis MR-1 UP and Plasmodium falciparum purine nucleoside phosphorylase (PfPNP). PfPNP is an outlier in terms of genetic distance from the other families of PNPs. PfPNP is catalytically active for inosine and guanosine, and in addition, has a weak UP activity. This subfamily belongs to the nucleoside phosphorylase-I (NP-I) family, whose members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	4.65794e-137
NZ_CP010867.1\|WP_000077187.1\|1968042_1969254_-\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0

>NZ_CP010867.1|WP_000887149.1|1959044_1959584_-|transcription-termination/antitermination-protein-NusG
MLDSFDKGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKTKEIEENRFPGYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVDVFDTNIKEGDVVQIIDGAFIGQEGRVVEIENNKVKLMINMFGSETQAELELYQVAEL
>NZ_CP010867.1|WP_000953628.1|1958061_1958907_-|patatin-family-protein
MLSVGLVLEGGGMRGLYTAGVLDAFLDAGIKVDGIISVSAGALFGVNFVSRQRERALRYNKKYLSHPKYMSLRSWLRTGNFVNKDFTYYEVPMKLDVFDDEAFKKSSIDFYAVATEMTSGKPEYFKIDSVFEQMEILRASSALPVVSKMVVWQGKKYLDGGLSDSIPVDFARGLGFDKLIVVMTRPLNYQKKPSSGRLYKTLYRKYPNFVKTASNRYQQYNNSLEKVMSLEKTGDLFAIRPSKSLVIGRLEKNPDKLDSIYQLGMKDAKSGMPELNSYLMK
>NZ_CP010867.1|WP_029550610.1|1956771_1958019_+|MFS-transporter
MSPLNINKNNWRALIAAIVASGTDDLNIMFLAFSMSTIITDLHLSAAQAGWIGTITNLGMLVGGLIFGLLADRYNKFKVFKWTILIFSIATGLVFFTTNLSYLYIMRFIAGIGVGGEYGIAIAIMAGIVPANKIGRISSLNGIAGQVGSISSALLAGWLAPALGWRGLFLFGLLPIVLVLWMQFAIDDKDILDQYNTDADDEPLDISIKALFDTPVLATQSLALMVMTTVQIAGFFGMMNWLPTIIQTNLNVSVKNSSLWMIATILGMCLGMLVFGQLLDKFGPRLVYGCFLLSSAICVYLFQFATTMPSMIIGGAVVGFFVNGMFAGYGAMITRLYPHHIRSTANNLILNVGRAIGGFSSVIIGMILDVSNVSMVMLFLASLYIVSFLSMLSIKQLKHQKYHTNLTQLDVKPTD
>NZ_CP010867.1|WP_000145177.1|1953893_1956395_-|leucine--tRNA-ligase
MTFYNHKEIEPKWQAFWADNHTFKTGTDASKPKFYALDMFPYPSGAGLHVGHPEGYTATDILSRFKRAQGHNVLHPMGWDAFGLPAEQYAMDTGNDPAEFTAENIANFKRQINALGFSYDWDREVNTTDPNYYKWTQWIFTKLYEKGLAYEAEVPVNWVEELGTAIANEEVLPDGTSERGGYPVVRKPMRQWMLKITAYAERLLEDLEEVDWPESIKDMQRNWIGKSTGANVTFKVKDTDKDFTVFTTRPDTLFGATYAVLAPEHALVDAITTADQAEAVAEYKRQASLKSDLARTDLAKEKTGVWTGAYAINPVNGKEIPVWIADYVLASYGTGAIMAVPAHDERDWEFAKQFKLDIIPVLEGGNVEEAAFTEDGLHINSDFLDGLDKASAIAKMVEWLEAEGVGNEKVTYRLRDWLFSRQRYWGEPIPIIHWEDGTSTAVPESELPLVLPVTKDIRPSGTGESPLANLTDWLEVTREDGVKGRRETNTMPQWAGSSWYYLRYIDPHNTEKLADEELLKQWLPVDIYVGGAEHAVLHLLYARFWHKVLYDLGVVPTKEPFQKLFNQGMILGTSYRDSRGALVATDKVEKRDGSFFHVETGEELEQAPAKMSKSLKNVVNPDDVVEQYGADTLRVYEMFMGPLDASIAWSEEGLEGSRKFLDRVYRLITTKEITKENSGALDKVYNETVKAVTEQVDQMKFNTAIAQLMVFVNAANKEDKLFSDYAKGFVQLIAPFAPHLGEELWQVLTASGESISYVPWPSYDESKLVENEIEIVVQIKGKVKAKLVVAKDLSREELQDLALANEKVQSEIAGKDIIKVIAVPNKLVNIVVK
>NZ_CP010867.1|WP_000903269.1|1953195_1953804_+|hypothetical-protein
MLHSKKIHSLSLIAVLSLATYTSLQPNHVTAEQSQKTSTVHMSQKTIEHKLKVADKEAAPLYAKIDHIQRHIEVKKAKDLKVIELYINKDINQLEKQNKRLLTKFYTSIDNQTWDSTSEVKKLIDKTNLSTNEKNRLKLYFEQRAYLETRLNDRYQKFDNSIENQNKELKILTSKIEKIYQKHGITKEVLKTYYAKKTVRAD
>NZ_CP010867.1|WP_000730416.1|1951714_1953103_+|HAMP-domain-containing-histidine-kinase
MKKKSLISNLILINSITLFLGFYLIYFSVNYVIKDYVHQMTRNSMQANFTILDSIYNNKKIPDENMVNQDSIFVWSYYAIFDQHYRMKYGTDNHKKESHDIIRYLTQKRLWQISKEKDGMFVTIKKKTYYVMTKDYSGILVDGSIKKVPKAQSQLFHVINFSDITYTQHLITKINHFLIVILVLTYIPMLFIMRKTFTGIRESIQSVQTYISSLWKNQGNHQSSQKEIVFSDFDPLLLESQEMANRIYQAEESQRNFFQNASHELRTPLMSIQGYTEGVQEGIIDAELAHSVILQESKKMKQLVDDIILLSKLDSNLSDQKDEFSLNELLNSIIAYFKPLANKQKISITYRPDEHEKLLKGNEELIQRAINNILSNALRYAVSHIEISYTNQKLTISNDGPAISKEDLPYIFDRFYKGHGGQTGIGLAMTKEIIKQHHGNIIAESDSTSTTFTIYFNCHKIA
>NZ_CP010867.1|WP_000161343.1|1951031_1951718_+|response-regulator-transcription-factor
MTKIIYFADDEKNIRDLVVPFLEHDGFTVRAFETGDLLLEAYKNQKPDLVILDIMMPGTNGLDVMKSIRQYDNVPIIMLTARDSDVDFITAFNLGTDDYFTKPFSPIKLSLHVKALFKRLDEKAIKNDTQYQFLDLTLDTEKRIALLSNEEMPLTKTEFDFLLVLIEKPETAFSRETLLNRIWGFDDIESRAVDDTIKRLRKKFKQYHSQVSIKTVWGYGFKLIKEDK
>NZ_CP010867.1|WP_001093374.1|1946083_1950799_+|S8-family-serine-peptidase
MNTKQRFSIRKYKLGAVSVLLGTLFFLGGITNVAADSVINKPSDIAVEQQVKDSPTSIANETPTNNTSSALASTAQDNLVTKANNNSPTETQPVAESHSQATETFSPAANQPVESTQEVSKTPLTKQNLAVKPTPAISKETPQNIDSNKIITVPKVWNTGYKGEGTVVAIIDSGLDTNHDALQLNDSTKAKYQNEQQMNAAKAKAGINYGKWYNNKVIFGHNYVDVNTELKEVKSTSHGMHVTSIATANPSKKDTNELIYGVAPEAQVMFMRVFSDEKRGTGPALYVKAIEDAVKLGADSINLSLGGANGSLVNADDRLIKALEMARLAGVSVVIAAGNDGTFGSGASKPSALYPDYGLIGSPSTAREAISVASYNNTTLVNKVFNIIGLENNKNLNNGLAAYADPKVSDKTFEVGKQYDYVFVGKGNDNDYKDKTLNGKIALIERGDITFTKKVVNAINHGAVGAIIFNNKAGEANLTMSLDPEASTIPAIFTQKEFGDVLAQKSYKIVFNNIKNKQANPNAGVLSDFSSWGLTADGQLKPDLSAPGGSIYAAINDNEYDMMSGTSMASPHVAGATALVKQYLLKEHPELKKGDIERTVKYLLMSTAKAHLNKDTGAYTSPRQQGAGIIDVAAAVQTGLYLTGGENNYGSVTLGNIKDKISFDVTVHNINKVAKDLHYTTYLNTDQVKDGFVTLAPQQLGTFTGKTIRIEPGQTKTITIDIDVSKYHDMLKKVMPNGYFLEGYVRFTDPVDGGEVLSIPYVGFKGEFQNLEVLEKSIYKLVANKEKGFYFQPKQTNEVPGSEDYTALMTTSSEPIYSTDGTSPIQLKALGSYKSIDGKWILQLDQKGQPHLAISPNDDQNQDAVAVKGVFLRNFNNLRAKVYRADDVNLQKPLWVSAPQAGDKNYYSGNTENPKSTFLYDTEWKGTTTDGIPLEDGKYKYVLTYYSDVPGSKPQQMVFDITLDRQAPTLTTATYDKDRRIFKARPAVEHGESDIFREQVFYLKKDKDGHYNSVLRQKGEDGILVEDNKVFIKQEKDGSFILPKEVNDFSHVYYTVEDYAGNLVSAKLEDLINIGNKNGLVNVKVFSPELNSNVDIDFSYSVKDDKGNVIKKQHHGKDLNLLKLPFGTYTFDLFLYDEERANLISPKSVTVTISEKDSLKDVLFKVNLLKKAALLVEFDKLLPKGATVQLVTKTNTVVDLPKATYSPTDYGKNIPVGDYRLNVTLPSGYSTLENLDDLLVSVKEGQVNLTKLTLINKAPLINALAEQTDIITQPVFYNAGTHLKNNYLANLEKAQTLIKNRVEQTSIDNAIAALRESRQALNGKETDTSLLAKAILAETEIKGNYQFVNASPLSQSTYINQVQLAKNLLQKPNVTQSEVDKALENLDIAKNQLNGHETDYSGLHHMIIKANVLKQTSSKYQNASQFAKENYNNLIKKAELLLSNRQATQAQVEELLNQIKATEQELDGRDRVSSAENYSQSLNDNDSLNTTPINPPNQPQALIFKKGMTKESEVAQKRVLGVTSQTDNQKVKTNKLPKTGESTPKITYTILLFSLSMLGLATIKLKSIKRE
>NZ_CP010867.1|WP_000410672.1|1945068_1945761_-|AzlC-family-ABC-transporter-permease
MEKGFKDGVKDALPTALGYISIGLAFGIVASASDLSAIEVGLMSALVYGGSAQFAMCALLLAKADLMTITITVFLVNLRNMLMSLHATTIFKSAHLMNQLAIGTLVTDESYGVLLGEALHHKVVSPSWMHGNNVMSYLTWVISTIIGTLLGSTIPNPEMFGLDFALVAMFIGLFVFQLFGMLSDGKRLVVYVLASVGLSYFLLATFLSGALSVLLATVVGCSVGVVLDDK
>NZ_CP010867.1|WP_000610952.1|1944755_1945079_-|AzlD-domain-containing-protein
MINSTVFLAILLGFVVSWVPRVAPFIFVKYKGLPNSLVKFLKFLPLSILFALTFSSFFSVKLGQLPTLKCLDLLAGIPTLVVTIRYRNLFYTVLTGIVTMALLRLLF
>NZ_CP010867.1|WP_000497678.1|1962548_1962722_-|preprotein-translocase-subunit-SecE
MFVKGIFQVLRDTTWPNRKQRWKDFISILEYTVFFTIVIYIFDKLLAAGVMDLINRF
>NZ_CP010867.1|WP_000057521.1|1962757_1962910_-|50S-ribosomal-protein-L33
MAQKKASLACTECGSRNYSIGVSSTPKPTRLEVNKFCKYCKKYTIHKETR
>NZ_CP010867.1|WP_000764812.1|1962958_1965280_-|penicillin-binding-protein
MKLFDKFIDLFRVDEDNDEMTRKNEQETREETSNLDGEEVYDIDDITRPSKSQYQRGIRHQKKNAKSRPEWLQKVDRYLPSPKNPIRRFWRRYRIGKLLFIALMAFILIFGSYLFYLSKTATVSDLQSALKTTTTIYDKNKEYAGKLSGQKGTYVELNAISDHLKNAVIATEDRTFYENNGVNFKRFFLAVATLGKFGGGSTITQQLAKNAYLSQDQTIKRKAREFFLALELTKKYSKAEILTMYLNNSYFGNGVWGVEDASRKYFGTSAANLTVDEAATLAGMLKGPEVYNPYYSVENATNRRDTVLAAMVDAGKLTKSQAKEAASIGMKNRLADTYAGKINDYRYPSYFDAVVNEAIDTYGISEKDIVNNGYKIYTALDQNYQSGMQKTFDDTSLFPVSDYDGQSAQGASVALDPKTGGVRGLVGRVQSTKDAQFRSFNYATQSKRSPASTIKPLVVYSPAIASGWSIDKELPNKVQDFHGYKPSNYGGIETESIPMYQALANSYNIPAVYTLDKLGINKAFTYGRKFGLNMSSANKELGVALGGSVTTNPLEMAQAYSTFANDGIMHRAHLITRIETANGKLVKQFTDKPKRVISRSVASKMTSMMLGTFSNGTAINANVYGYTMAGKTGTTETDFNPNLSGDQWVVGYTPDVVISQWVGFKKTDKHHYLTDSSAGTASNIFSTQASYILPYTKGSSFTHIENAYFQNGIGSVYNAQDASNTTNQESRSIINDLKDSASKAAQDISRAVEDSNFQEKVKDAWNSLKDYFR
>NZ_CP010867.1|WP_000010477.1|1965323_1966208_+|RluA-family-pseudouridine-synthase
MSFSLKIRNPYGEHTVKELLEDYFLIPRKIRHFLRVKKHVLINNEFINWQTVVQENDTITLIFDDEDYPTKKIPLGRAELIDCLYEDEHLIIVNKPEGMKTHGNQPNEIALLNHVSAYSGQTCYVVHRLDMETSGAVLFAKNPFILPLINQRLERKEIWREYWALVEGKFSPKHQVLRDKIGRNRHDRRKRIIDSKNGQHAMTIIDVLKYTQNSSLIKCRLETGRTHQIRIHLSHHGHPLIGDPLYNPSSNNERLMLHAHRLTLSHPLTCETISVEAPSSTFEKILNNYKKGVG
>NZ_CP010867.1|WP_000459240.1|1966232_1967873_-|hypothetical-protein
MFDFFKKKVVKVCLVIFGIVLVSLLSLGFFYFSKGQVLSRFVAARSRTSGQAFDNIKEYMVWSDTGESITNDEANYANFEPLSKSEARKLGQEIKEGNKNDSMYLKRVGSRLGIFPDYRIANKPMSLTLKTNVPKLDVLLNQKKVATSNSDHFSVTVERLPRTHYTASLEGTSDGKEIKLKKDYDGKNQTIDLSVAFKSFTVTSNLMDGNLYFGDNRIAKLKDGSYSVENYPVTDGSKAYIKKVFNDGEITSHKQKLISIADNQTIKLDVDGLLNEKEAGQKLITAFNQLILYVSTGQDPQTLGTVFEKGAENDFYKGLKESIKAKFVTDNRKASHFTIPNIVLNKMTQVGKESYQVNFAADYDFNYDKSTDPDKKTYGHIIQNLTGNFIMKKSGNSYLISNDGKKDITVAKETNKVKADPVSIFPENLVGSWKGEVEDGTVTMTFDKDGKVTQKKVYKDSKSKESNHSAKVTKLEDKGNGLYLYQYESGTDTTTFVTGGIGGLKVKYAYGIKIEGNKIIPVIWQTSSDGEFDYHKPLLSKPLTKQ
>NZ_CP010867.1|WP_000077187.1|1968042_1969254_-|phosphopentomutase
MSQFDRIHLVVLDSVGIGAAPDANDFVNAGVPDGASDTLGHISKTVGLAVPNMAKIGLGNIPRPQALKTVPAEENPSGYATKLQEVSLGKDTMTGHWEIMGLNITEPFDTFWNGFPEDIITKIEDFSGRKVIREANKPYSGTAVIDDFGPRQMETGELIIYTSADPVLQIAAHEDIIPLEELYRICEYARSITMERPALLGRIIARPYVGEPGNFTRTANRHDYAVSPFEDTVLNKLDQAGIDTYAVGKINDIFNGSGINHDMGHNKSNSHGIDTLIKTMGLSEFEKGFSFTNLVDFDALYGHRRDPHGYRDCLHEFDERLPEIISAMRDKDLLLITADHGNDPTYAGTDHTREYIPLLAYSPSFTGNGLIPVGHFADISATVADNFGVDTAMIGESFLQDLV
>NZ_CP010867.1|WP_000453154.1|1969320_1969992_-|deoxyribose-phosphate-aldolase
MEVKDILKTVDHTLLATTATWPEIQTILDDAMAYETASACIPASYVKKAAEYVSGKLAICTVIGFPNGYSTTAAKVFECQDAIKNGADEIDMVINLTDVKNGDFDTVEEEIRQIKAACQDHILKVIVETCQLTKEELIELCGVVTRSGADFIKTSTGFSTAGATFEDVEVMAKYVGEGVKIKAAGGISSLEDAEKFIALGASRLGTSRIIKIVKNQKVEEGTY
>NZ_CP010867.1|WP_001159688.1|1970021_1971224_-|NupC/NupG-family-nucleoside-CNT-transporter
MQFIYSIIGILLVLGIVYAISFNRKSVSLSLIGKALIVQFIIALILVRIPLGQQVVSVVSTGVTKVINCGQAGLNFVFGSLADSGAKTGFIFAIQTLGNIVFLSALVSLLYYVGILGFVVKWIGKGVGKIMKSSEVESFVAVANMFLGQTDSPILVSKYLGRMTDSEIMVVLVSGMGSMSVSILGGYIALGIPMEYLLIASTMVPIGSILIAKILLPQTEPVQKIDDIKMDNKGNNANVIDAIAEGASTGAQMAFSIGASLIAFVGLVSLINMMLSGLGIRLEQIFSYVFAPFGFLMGFDHKNILLEGNLLGSKLILNEFVSFQQLGHLIKSLDYRTALVATISLCGFANLSSLGICVSGIAVLCPEKRGTLARLVFRAMIGGIAVSMLSAFIVGIVTLF
>NZ_CP010867.1|WP_001182060.1|1971244_1972024_-|uridine-phosphorylase
MQNYSGEVGLQYHLQIRPGDVGRYVIMPGDPKRCAKIAEHFDNAVLVADSREYVTYTGTLNGEKVSVTSTGIGGPSASIAMEELKLCGADTFIRVGTCGGIDLDVKGGDIVIATGAIRMEGTSKEYAPIEFPAVADLEVTNALVNAAKKLGYTSHAGVVQCKDAFYGQHEPERMPVSYELLNKWEAWKRLGTKASEMESAALFVAASHLGVRCGSDFLVVGNQERNALGMDNPMAHDTEAAIQVAVEALRTLIENDKSQ
>NZ_CP010867.1|WP_001125582.1|1972181_1972919_+|GntR-family-transcriptional-regulator
MPKNELNNKLNKLKHVQVYNKIFNMIQDGTYSPGMQLPSEPELAGQLNVSRATLRKSLALLQEDHLVKNIRGKGNFIRENSSNLSENGYENRQHPIKTCLTSKITEVELEFRVEVPAEAITASLKQETPVVVIADRWYHTDDGPLAYTLSFIPIELISDAEISLHDTKQLLNFIEEGIYQEGISSHSQSHLGYATSGNFSATKYTLSDHGQFILIQETIFNQEKILMCNKHYVPIEHFELSITSH

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP010867_2	2.5\|1960329\|18\|NZ_CP010867\|CRT	1960329-1960346	18	NZ_CP010867.1	1959981-1959998	1	0.944

1. spacer 2.5|1960329|18|NZ_CP010867|CRT matches to position: 1959981-1959998, mismatch: 1, identity: 0.944

tggcttctggtttggcct	CRISPR spacer
tggcttctggtttagcct	Protospacer
*************.****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP010867_1	1.2\|941727\|30\|NZ_CP010867\|CRISPRCasFinder,CRT	941727-941756	30	MK448911	Streptococcus phage Javan34, complete genome	37564-37593	1	0.967
NZ_CP010867_1	1.1\|941661\|30\|NZ_CP010867\|CRISPRCasFinder,CRT	941661-941690	30	MN692993	Marine virus AFVG_117M87, complete genome	14759-14788	4	0.867
NZ_CP010867_1	1.1\|941661\|30\|NZ_CP010867\|CRISPRCasFinder,CRT	941661-941690	30	MG575419	Proteus phage vB_PmiP_RS8pmA, complete genome	12347-12376	5	0.833
NZ_CP010867_1	1.2\|941727\|30\|NZ_CP010867\|CRISPRCasFinder,CRT	941727-941756	30	MT074138	Bacteroides phage DAC17, complete genome	72897-72926	5	0.833
NZ_CP010867_1	1.2\|941727\|30\|NZ_CP010867\|CRISPRCasFinder,CRT	941727-941756	30	MT074136	Bacteroides phage DAC15, complete genome	73490-73519	5	0.833
NZ_CP010867_1	1.1\|941661\|30\|NZ_CP010867\|CRISPRCasFinder,CRT	941661-941690	30	HQ259105	Escherichia phage vB_EcoP_G7C, complete genome	35761-35790	6	0.8
NZ_CP010867_1	1.1\|941661\|30\|NZ_CP010867\|CRISPRCasFinder,CRT	941661-941690	30	MN694692	Marine virus AFVG_250M385, complete genome	12561-12590	6	0.8
NZ_CP010867_1	1.1\|941661\|30\|NZ_CP010867\|CRISPRCasFinder,CRT	941661-941690	30	NZ_CP020118	Escherichia coli strain AR_0104 plasmid unitig_6, complete sequence	49130-49159	6	0.8
NZ_CP010867_1	1.1\|941661\|30\|NZ_CP010867\|CRISPRCasFinder,CRT	941661-941690	30	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	517179-517208	7	0.767
NZ_CP010867_1	1.1\|941661\|30\|NZ_CP010867\|CRISPRCasFinder,CRT	941661-941690	30	MN692987	Marine virus AFVG_117M51, complete genome	20101-20130	7	0.767
NZ_CP010867_2	2.4\|1960269\|42\|NZ_CP010867\|CRT	1960269-1960310	42	NZ_CP020439	Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence	39878-39919	7	0.833
NZ_CP010867_2	2.4\|1960269\|42\|NZ_CP010867\|CRT	1960269-1960310	42	NZ_CP020439	Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence	225328-225369	7	0.833
NZ_CP010867_2	2.6\|1960365\|30\|NZ_CP010867\|CRT	1960365-1960394	30	NC_048797	Bacillus phage vB_BmeM-Goe8, complete genome	33780-33809	7	0.767
NZ_CP010867_1	1.1\|941661\|30\|NZ_CP010867\|CRISPRCasFinder,CRT	941661-941690	30	MN693222	Marine virus AFVG_25M67, complete genome	28877-28906	8	0.733
NZ_CP010867_1	1.1\|941661\|30\|NZ_CP010867\|CRISPRCasFinder,CRT	941661-941690	30	MN693638	Marine virus AFVG_250M154, complete genome	10512-10541	8	0.733
NZ_CP010867_1	1.1\|941661\|30\|NZ_CP010867\|CRISPRCasFinder,CRT	941661-941690	30	NZ_CP020456	Vibrio coralliilyticus strain SNUTY-1 plasmid pSNUTY2, complete sequence	53311-53340	8	0.733
NZ_CP010867_1	1.1\|941661\|30\|NZ_CP010867\|CRISPRCasFinder,CRT	941661-941690	30	MN694591	Marine virus AFVG_250M155, complete genome	26122-26151	8	0.733
NZ_CP010867_1	1.2\|941727\|30\|NZ_CP010867\|CRISPRCasFinder,CRT	941727-941756	30	KM236245	Bacillus phage Mater, complete genome	119964-119993	9	0.7
NZ_CP010867_1	1.3\|941793\|30\|NZ_CP010867\|CRISPRCasFinder,CRT	941793-941822	30	NZ_CP040335	Bacillus cereus strain DLOU-Changhai plasmid unnamed1, complete sequence	31536-31565	9	0.7
NZ_CP010867_2	2.6\|1960365\|30\|NZ_CP010867\|CRT	1960365-1960394	30	NC_011759	Yersinia pseudotuberculosis pGDT4 plasmid	35429-35458	9	0.7

1. spacer 1.2|941727|30|NZ_CP010867|CRISPRCasFinder,CRT matches to MK448911 (Streptococcus phage Javan34, complete genome) position: , mismatch: 1, identity: 0.967

tatgtcttctaacagttgcttcttgtgctt	CRISPR spacer
tatgtcttctaacagttgcttcttgtactt	Protospacer
**************************.***

2. spacer 1.1|941661|30|NZ_CP010867|CRISPRCasFinder,CRT matches to MN692993 (Marine virus AFVG_117M87, complete genome) position: , mismatch: 4, identity: 0.867

aacattagccttttctaactcttcagctgt	CRISPR spacer
agccttagcatttgctaactcttcagctgt	Protospacer
*.* ***** *** ****************

3. spacer 1.1|941661|30|NZ_CP010867|CRISPRCasFinder,CRT matches to MG575419 (Proteus phage vB_PmiP_RS8pmA, complete genome) position: , mismatch: 5, identity: 0.833

aacattagccttttctaact---cttcagctgt	CRISPR spacer
aaccttagccttttctaactcaactccagc---	Protospacer
*** ****************   **.****

4. spacer 1.2|941727|30|NZ_CP010867|CRISPRCasFinder,CRT matches to MT074138 (Bacteroides phage DAC17, complete genome) position: , mismatch: 5, identity: 0.833

tatgtcttctaacagttgcttctt-gtgctt	CRISPR spacer
tatagcttctaacagttgcttcttagtgaa-	Protospacer
***. ******************* ***

5. spacer 1.2|941727|30|NZ_CP010867|CRISPRCasFinder,CRT matches to MT074136 (Bacteroides phage DAC15, complete genome) position: , mismatch: 5, identity: 0.833

tatgtcttctaacagttgcttctt-gtgctt	CRISPR spacer
tatagcttctaacagttgcttcttagtgaa-	Protospacer
***. ******************* ***

6. spacer 1.1|941661|30|NZ_CP010867|CRISPRCasFinder,CRT matches to HQ259105 (Escherichia phage vB_EcoP_G7C, complete genome) position: , mismatch: 6, identity: 0.8

aacattagccttttctaactcttcagctgt	CRISPR spacer
gcctttagcgttttctaactcttcagcttc	Protospacer
. * ***** ****************** .

7. spacer 1.1|941661|30|NZ_CP010867|CRISPRCasFinder,CRT matches to MN694692 (Marine virus AFVG_250M385, complete genome) position: , mismatch: 6, identity: 0.8

aacattagccttttctaactcttcagctgt	CRISPR spacer
atcattggccttatctaactcttcagcctg	Protospacer
* ****.***** **************.

8. spacer 1.1|941661|30|NZ_CP010867|CRISPRCasFinder,CRT matches to NZ_CP020118 (Escherichia coli strain AR_0104 plasmid unitig_6, complete sequence) position: , mismatch: 6, identity: 0.8

aacattagccttttctaactcttcagctgt	CRISPR spacer
aggcgtagccctttcgaactcttcagctgt	Protospacer
*.   *****.**** **************

9. spacer 1.1|941661|30|NZ_CP010867|CRISPRCasFinder,CRT matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 7, identity: 0.767

aacattagccttttctaactcttcagctgt	CRISPR spacer
cccattttccttttctaactcttcaattat	Protospacer
  ****  *****************..*.*

10. spacer 1.1|941661|30|NZ_CP010867|CRISPRCasFinder,CRT matches to MN692987 (Marine virus AFVG_117M51, complete genome) position: , mismatch: 7, identity: 0.767

aacattagccttttctaactcttcagctgt-	CRISPR spacer
aaccttagctttttctaactctt-gtctacc	Protospacer
*** *****.************* . **..

11. spacer 2.4|1960269|42|NZ_CP010867|CRT matches to NZ_CP020439 (Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence) position: , mismatch: 7, identity: 0.833

taacgtctggtttaacttctggcttagcctctggtttggctt	CRISPR spacer
tagcaaccggtttaacttctggcttagcctctgccttggctg	Protospacer
**.*. *.************************* .******

12. spacer 2.4|1960269|42|NZ_CP010867|CRT matches to NZ_CP020439 (Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence) position: , mismatch: 7, identity: 0.833

taacgtctggtttaacttctggcttagcctctggtttggctt	CRISPR spacer
tagcaaccggtttaacttctggcttagcctctgccttggctg	Protospacer
**.*. *.************************* .******

13. spacer 2.6|1960365|30|NZ_CP010867|CRT matches to NC_048797 (Bacillus phage vB_BmeM-Goe8, complete genome) position: , mismatch: 7, identity: 0.767

tagcttctggcttaacgtctggcttaacat	CRISPR spacer
ctgcttctggcttaacctctggctctgctt	Protospacer
. ************** *******. .* *

14. spacer 1.1|941661|30|NZ_CP010867|CRISPRCasFinder,CRT matches to MN693222 (Marine virus AFVG_25M67, complete genome) position: , mismatch: 8, identity: 0.733

aacattagccttttctaactcttcagctgt	CRISPR spacer
tttgtatgctttttctaactcttcagctga	Protospacer
  ..*  **.*******************

15. spacer 1.1|941661|30|NZ_CP010867|CRISPRCasFinder,CRT matches to MN693638 (Marine virus AFVG_250M154, complete genome) position: , mismatch: 8, identity: 0.733

aacattagccttttctaactcttcagctgt	CRISPR spacer
taacttagccttttctatctcatcagcaac	Protospacer
 *  ************* *** ***** ..

16. spacer 1.1|941661|30|NZ_CP010867|CRISPRCasFinder,CRT matches to NZ_CP020456 (Vibrio coralliilyticus strain SNUTY-1 plasmid pSNUTY2, complete sequence) position: , mismatch: 8, identity: 0.733

aacattagccttttctaactcttcagctgt	CRISPR spacer
agcattagccttatcaaactcttcaatacg	Protospacer
*.********** ** *********..

17. spacer 1.1|941661|30|NZ_CP010867|CRISPRCasFinder,CRT matches to MN694591 (Marine virus AFVG_250M155, complete genome) position: , mismatch: 8, identity: 0.733

aacattagccttttctaactcttcagctgt	CRISPR spacer
taacttagccttttctatctcatcagcaac	Protospacer
 *  ************* *** ***** ..

18. spacer 1.2|941727|30|NZ_CP010867|CRISPRCasFinder,CRT matches to KM236245 (Bacillus phage Mater, complete genome) position: , mismatch: 9, identity: 0.7

tatgtcttctaacagttgcttcttgtgctt	CRISPR spacer
agtatcttctaacagttgcttcatgaatac	Protospacer
 .*.****************** ** .. .

19. spacer 1.3|941793|30|NZ_CP010867|CRISPRCasFinder,CRT matches to NZ_CP040335 (Bacillus cereus strain DLOU-Changhai plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

ccgtcaaacaagagcgacagcgaaacaagc	CRISPR spacer
aaacaaaacaagagagacagcggaacaact	Protospacer
  .. ********* *******.***** .

20. spacer 2.6|1960365|30|NZ_CP010867|CRT matches to NC_011759 (Yersinia pseudotuberculosis pGDT4 plasmid) position: , mismatch: 9, identity: 0.7

tagcttctggcttaacgtctggcttaacat	CRISPR spacer
ggccggactgcttagcgtctggcttaacat	Protospacer
 . *   . *****.***************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

36582 : 48647

Synechococcus_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001042250.1\|36582_40308_+	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	1.9e-38	25.9
WP_000220676.1\|40541_41996_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.7e-54	32.7
WP_001291328.1\|42023_43046_+	phosphoribosylformylglycinamidine cyclo-ligase	R9TMC7	Synechococcus_phage	1.1e-63	42.7
WP_000685109.1\|43213_43762_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.4e-25	35.6
WP_000780022.1\|43784_44537_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000166549.1\|44556_46104_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	3.9e-78	49.2
WP_001045908.1\|46296_47196_+	peptidoglycan DD-metalloendopeptidase family protein	A0A221J6U0	Arthrobacter_phage	4.1e-19	45.9
WP_000783419.1\|47342_48647_+	LysM peptidoglycan-binding domain-containing protein	A0A2D1GNZ3	Streptomyces_phage	3.7e-05	40.5

DBSCAN-SWA_2

589184 : 660622

Streptococcus_phage(98.25%)

head,capsid,holin,protease,integrase,tail,terminase

attL 591084:591100|attR 638302:638318

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000902645.1\|589184_590540_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	D0R096	Streptococcus_phage	2.3e-191	73.4
WP_001261523.1\|591061_591580_+	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA
591084:591100	attL	NA	NA	NA	NA
WP_001291561.1\|591771_592989_-\|integrase	tyrosine-type recombinase/integrase	A0A1S5SEW7	Streptococcus_phage	3.7e-233	100.0
WP_000814511.1\|593070_593274_-	excisionase	A0A1S5SF07	Streptococcus_phage	4.0e-31	100.0
WP_000857133.1\|593734_593965_-	helix-turn-helix domain-containing protein	A0A1S5SEX1	Streptococcus_phage	2.7e-36	100.0
WP_000804885.1\|593961_594384_-	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	2.5e-72	100.0
WP_001227347.1\|594888_595242_+	helix-turn-helix domain-containing protein	A0A1S5SFA6	Streptococcus_phage	1.3e-58	100.0
WP_000336323.1\|595301_595469_-	cysteine-rich KTR domain-containing protein	D0R0F6	Streptococcus_phage	1.6e-14	68.0
WP_000691736.1\|595587_597507_-	tetracycline resistance ribosomal protection protein Tet(M)	A0A1S5SF82	Streptococcus_phage	0.0e+00	99.5
WP_001814923.1\|597522_597639_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA
WP_001224318.1\|597883_598816_-	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	3.1e-171	99.4
WP_000769868.1\|598812_599814_-	lysozyme family protein	A0A1S5SEZ8	Streptococcus_phage	5.0e-191	100.0
WP_029550625.1\|599810_601988_-	membrane protein	A0A1S5SF30	Streptococcus_phage	0.0e+00	99.9
WP_000331160.1\|601990_604438_-	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	100.0
WP_000506270.1\|604421_604928_-	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	8.6e-91	100.0
WP_000342539.1\|604902_605400_-	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	1.7e-91	100.0
WP_001009056.1\|605516_605738_-	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	4.3e-31	100.0
WP_029550624.1\|605780_606986_-	replication initiation factor domain-containing protein	A0A1S5SEX3	Streptococcus_phage	1.8e-232	99.8
WP_000879507.1\|607008_607161_-	hypothetical protein	NA	NA	NA	NA
WP_000813488.1\|607163_608549_-	DNA translocase FtsK	A0A1S5SFB5	Streptococcus_phage	1.1e-265	100.0
WP_000985015.1\|608577_608964_-	YdcP family protein	A0A1S5SF96	Streptococcus_phage	3.0e-64	100.0
WP_000420682.1\|608979_609294_-	YdcP family protein	A0A1S5SF38	Streptococcus_phage	5.2e-54	100.0
WP_000445922.1\|609920_610451_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_047940089.1\|610620_615912_+	YSIRK signal domain/LPXTG anchor domain surface protein	NA	NA	NA	NA
WP_000459852.1\|617681_619550_+	ImmA/IrrE family metallo-endopeptidase	E4ZFJ9	Streptococcus_phage	2.0e-302	80.9
WP_001122250.1\|619958_620528_+	hypothetical protein	A0A1B0RXB3	Streptococcus_phage	1.1e-86	81.0
WP_000905644.1\|620566_622522_-	DNA polymerase	D0R0B0	Streptococcus_phage	0.0e+00	83.6
WP_000464240.1\|622571_622736_-	hypothetical protein	NA	NA	NA	NA
WP_000208946.1\|622752_623316_-	DUF2815 family protein	A0A1B0RXA9	Streptococcus_phage	3.3e-91	93.4
WP_001868547.1\|623320_624442_-	DUF2800 domain-containing protein	A0A1X9I6D8	Streptococcus_phage	8.0e-198	88.5
WP_000041407.1\|624434_624758_-	hypothetical protein	A0A1B0RXB7	Streptococcus_phage	2.0e-32	71.2
WP_001160916.1\|625154_627434_+	hypothetical protein	M1NSF0	Streptococcus_phage	0.0e+00	80.7
WP_001208304.1\|627784_628066_+	VRR-NUC domain-containing protein	M1PFY8	Streptococcus_phage	5.5e-39	82.8
WP_000777509.1\|628046_629423_+	DEAD/DEAH box helicase	A0A1X9I6B0	Streptococcus_phage	5.3e-228	84.5
WP_000373917.1\|629415_629925_+	hypothetical protein	Q6DMV6	Streptococcus_phage	1.4e-45	54.5
WP_000166942.1\|630104_630287_+	hypothetical protein	A0A1B0RXC3	Streptococcus_phage	2.0e-21	88.3
WP_000578149.1\|630334_631372_+	methionine adenosyltransferase	E4ZFL0	Streptococcus_phage	8.8e-167	84.3
WP_001138025.1\|631373_631739_+	HNH endonuclease	E4ZFL2	Streptococcus_phage	3.9e-61	86.7
WP_000999418.1\|632027_632483_+	hypothetical protein	A0A1B0RXC6	Streptococcus_phage	5.4e-44	51.0
WP_000211619.1\|632454_633711_+	DNA modification methylase	E4ZFL4	Streptococcus_phage	3.7e-220	88.7
WP_000176353.1\|633707_634961_+	DNA (cytosine-5-)-methyltransferase	M1NSK8	Streptococcus_phage	3.6e-231	93.5
WP_000342208.1\|635303_635753_+	DUF4314 domain-containing protein	E4ZFL7	Streptococcus_phage	1.8e-15	63.6
WP_029550623.1\|635804_636278_+\|terminase	phage terminase small subunit P27 family	A0A1X9I6K0	Streptococcus_phage	8.6e-85	96.2
WP_000220988.1\|636274_637867_+\|terminase	terminase large subunit	A0A1B0RXJ8	Streptococcus_phage	2.5e-306	95.5
WP_001166641.1\|637937_638195_+	type II toxin-antitoxin system Phd/YefM family antitoxin	E4ZFM1	Streptococcus_phage	1.2e-35	95.3
WP_001221830.1\|638191_638563_+	type II toxin-antitoxin system death-on-curing family toxin	A0A1X9I6C0	Streptococcus_phage	1.2e-57	89.4
638302:638318	attR	NA	NA	NA	NA
WP_000149740.1\|638588_638915_+	hypothetical protein	NA	NA	NA	NA
WP_001225239.1\|640263_640962_+\|protease	Clp protease ClpP	A0A1B0RXE1	Streptococcus_phage	3.8e-105	83.2
WP_000040499.1\|640975_642184_+\|capsid	phage major capsid protein	M1Q1R5	Streptococcus_phage	4.0e-211	90.8
WP_000988604.1\|642180_642438_+\|head,tail	phage gp6-like head-tail connector protein	D0R0D7	Streptococcus_phage	9.5e-30	77.6
WP_000684963.1\|642437_642776_+\|head,tail	head-tail adaptor protein	A0A1B0RXE4	Streptococcus_phage	4.7e-37	68.8
WP_000161246.1\|642768_643137_+	HK97 gp10 family phage protein	Q6DMT7	Streptococcus_phage	1.0e-32	62.1
WP_001209972.1\|643145_643472_+	hypothetical protein	M1Q1Z4	Streptococcus_phage	2.4e-38	68.5
WP_000818569.1\|643474_644044_+	hypothetical protein	A0A1B0RXE2	Streptococcus_phage	3.6e-98	95.2
WP_001249617.1\|644055_644475_+	hypothetical protein	A0A1X9I691	Streptococcus_phage	9.7e-56	76.3
WP_000918338.1\|644769_647889_+\|tail	phage tail tape measure protein	Q6DMT2	Streptococcus_phage	5.8e-254	77.1
WP_000589859.1\|647885_648611_+	hypothetical protein	M1Q107	Streptococcus_phage	1.6e-82	61.1
WP_000966173.1\|648610_651526_+\|tail	phage tail protein	Q6DMT0	Streptococcus_phage	0.0e+00	64.1
WP_000796413.1\|651538_653395_+	hypothetical protein	Q6DMS9	Streptococcus_phage	1.0e-258	73.1
WP_000661349.1\|653412_653811_+\|holin	phage holin family protein	D0R0E9	Streptococcus_phage	5.1e-38	60.8
WP_000143481.1\|653812_655219_+	glucosaminidase domain-containing protein	A0A1B0RXL4	Streptococcus_phage	2.4e-106	63.1
WP_000123549.1\|655354_655462_+\|holin	putative holin-like toxin	NA	NA	NA	NA
WP_000290969.1\|655769_657011_+	recombinase family protein	A0A1X9I6J1	Streptococcus_phage	7.8e-170	69.2
WP_170960311.1\|656913_658260_+	recombinase family protein	E4ZFN9	Streptococcus_phage	4.2e-201	79.1
WP_000504420.1\|658329_659103_+	hypothetical protein	NA	NA	NA	NA
WP_000247957.1\|659116_660622_+	serine/threonine protein kinase	A0A0G2YBE6	Acanthamoeba_polyphaga_mimivirus	3.8e-09	25.1

DBSCAN-SWA_3

1549532 : 1560266

Streptococcus_phage(84.62%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000767485.1\|1549532_1550360_+	exodeoxyribonuclease III	M1PSC0	Streptococcus_phage	5.1e-125	78.4
WP_000287943.1\|1550400_1550757_-	arsenate reductase family protein	M1PLC0	Streptococcus_phage	5.2e-42	72.6
WP_000966772.1\|1550758_1551235_-	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	7.1e-39	50.9
WP_000232152.1\|1551291_1552473_-	phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	1.1e-168	75.3
WP_001167085.1\|1552535_1553084_-	acetyltransferase	M1PSC3	Streptococcus_phage	1.1e-54	58.4
WP_000158399.1\|1553151_1554243_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	1.7e-165	78.0
WP_000603275.1\|1554375_1555011_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_000425864.1\|1555280_1556150_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	3.7e-110	70.7
WP_000358198.1\|1556149_1556476_-	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	3.2e-30	61.1
WP_000364568.1\|1556506_1557370_-	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	2.5e-74	50.0
WP_000715594.1\|1557389_1558025_-	dTMP kinase	M1PSC7	Streptococcus_phage	1.4e-66	60.1
WP_001144246.1\|1558113_1558773_-	CBS domain-containing protein	M1NSC5	Streptococcus_phage	4.7e-65	56.5
WP_000178141.1\|1558791_1559502_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.0e-17	27.7
WP_001185989.1\|1559501_1560266_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.9e-15	24.8

DBSCAN-SWA_4

2037323 : 2046816

Streptococcus_phage(81.82%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000038826.1\|2037323_2037701_-	DUF1492 domain-containing protein	Q7Y4J3	Streptococcus_phage	3.2e-10	37.9
WP_000891151.1\|2037834_2038323_-	hypothetical protein	A0A1X9I5V2	Streptococcus_phage	1.0e-48	58.6
WP_001258765.1\|2038395_2038953_-	hypothetical protein	A0A1X9I5U4	Streptococcus_phage	2.4e-30	59.8
WP_000694573.1\|2039110_2039284_-	hypothetical protein	A0A1X9I5U0	Streptococcus_phage	4.3e-10	56.1
WP_001069293.1\|2039280_2039538_-	hypothetical protein	NA	NA	NA	NA
WP_000656430.1\|2039830_2041225_-	hypothetical protein	W8CQP1	Croceibacter_phage	3.7e-43	33.7
WP_001029296.1\|2041236_2042094_-	primase C-terminal domain-containing protein	A0A1X9I6L2	Streptococcus_phage	3.0e-120	72.9
WP_001100460.1\|2042094_2042367_-	hypothetical protein	A0A1X9I5U9	Streptococcus_phage	1.8e-18	56.8
WP_001157003.1\|2042708_2042900_-	hypothetical protein	NA	NA	NA	NA
WP_001256559.1\|2042902_2043124_-	hypothetical protein	NA	NA	NA	NA
WP_000877499.1\|2043120_2043453_-	hypothetical protein	NA	NA	NA	NA
WP_001259478.1\|2043529_2044036_-	hypothetical protein	A0A1X9I5V7	Streptococcus_phage	4.5e-07	35.4
WP_000130289.1\|2044124_2044298_-	hypothetical protein	NA	NA	NA	NA
WP_001021397.1\|2044396_2045035_-	Bro-N domain-containing protein	NA	NA	NA	NA
WP_001258609.1\|2045270_2045873_-	phage repressor protein	A0A1W6JPC3	Staphylococcus_phage	6.7e-42	46.7
WP_000909285.1\|2045888_2046074_-	hypothetical protein	A0A1X9I5U7	Streptococcus_phage	6.2e-07	54.8
WP_001080836.1\|2046228_2046816_+	helix-turn-helix domain-containing protein	A0A1X9I5U6	Streptococcus_phage	4.0e-15	37.5

DBSCAN-SWA_5

2061451 : 2068625

Staphylococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001042665.1\|2061451_2062126_-	transglycosylase SLT domain-containing protein	Q4Z8Z7	Staphylococcus_phage	8.9e-27	54.3
WP_000029069.1\|2062231_2062771_-	LysM peptidoglycan-binding domain-containing protein	A0A249XZV3	Enterococcus_phage	1.3e-17	46.4
WP_000359358.1\|2062986_2063781_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_000510606.1\|2063773_2064616_-	energy-coupling factor transporter ATPase	A0A2H4PQG7	Staphylococcus_phage	2.0e-15	28.5
WP_000181758.1\|2064591_2065431_-	energy-coupling factor transporter ATPase	W8CYL7	Bacillus_phage	6.7e-16	31.0
WP_000239225.1\|2065430_2065973_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_000217762.1\|2066095_2067379_-	insulinase family protein	A0A2H4UVM3	Bodo_saltans_virus	1.6e-05	23.6
WP_000706188.1\|2067380_2068625_-	insulinase family protein	A0A1X9I714	Streptococcus_phage	3.7e-87	41.3

Anti-CRISPR protein detection

Acr_ID: NZ_CP010867.1|WP_000384270.1|234150_234477_+|replication-initiator-protein-A

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP010867.1|WP_000384270.1|234150_234477_+|replication-initiator-protein-A

234150_234477_+

108 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|63	0.9444444444444444	1	1.0

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP010867

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information