CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP011771	Croceicoccus naphthovorans strain PQ-2 plasmid p1, complete sequence	0 crisprs	RT	0
NZ_CP011772	Croceicoccus naphthovorans strain PQ-2 plasmid p2, complete sequence	0 crisprs	NA	0
NZ_CP011770	Croceicoccus naphthovorans strain PQ-2 chromosome, complete genome	0 crisprs	DinG,csa3,DEDDh	6

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

30925 : 135469

Staphylococcus_phage(14.29%)

integrase,tRNA,transposase,protease

attL 53175:53190|attR 105001:105020

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_156170621.1\|30925_31698_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.9e-25	46.1
WP_053058900.1\|31748_32174_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_047819470.1\|32185_33628_-	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_179944988.1\|33660_34443_-	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.5e-21	31.1
WP_082134999.1\|34824_35130_+	hypothetical protein	NA	NA	NA	NA
WP_047819471.1\|35231_36575_+	TldD/PmbA family protein	NA	NA	NA	NA
WP_047819472.1\|36568_37963_+	mechanosensitive ion channel	NA	NA	NA	NA
WP_047819473.1\|37978_38518_-	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	7.6e-45	49.7
WP_047822890.1\|38688_39921_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_047822893.1\|39945_41013_+	peptide chain release factor 1	NA	NA	NA	NA
WP_047822896.1\|41019_41862_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_082134713.1\|42145_42886_+	DUF4167 domain-containing protein	NA	NA	NA	NA
WP_082134714.1\|42918_44538_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA
WP_047819474.1\|44608_45856_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.2e-90	45.3
WP_053058902.1\|45944_46622_+	hypothetical protein	M4STA9	Rhodobacter_phage	9.0e-11	37.2
WP_179944948.1\|46655_48398_+	5'-nucleotidase C-terminal domain-containing protein	NA	NA	NA	NA
WP_047819475.1\|48399_48936_-	glutathione peroxidase	NA	NA	NA	NA
WP_082134715.1\|48962_49598_-	CoA transferase subunit B	NA	NA	NA	NA
WP_053058903.1\|49612_50410_-	hypothetical protein	NA	NA	NA	NA
WP_047819477.1\|50415_51123_-	CoA transferase subunit A	NA	NA	NA	NA
WP_179944989.1\|51260_53990_+	bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA	NA	NA	NA
53175:53190	attL	NA	NA	NA	NA
WP_047819478.1\|53986_54466_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
53175:53190	attL	NA	NA	NA	NA
WP_047819479.1\|54478_55279_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_047819480.1\|55461_56181_+	M23 family metallopeptidase	A8ATH6	Listeria_phage	4.9e-23	50.0
WP_053058904.1\|56261_59816_-	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	1.1e-51	36.4
WP_047819481.1\|59924_60806_-	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.2e-61	44.7
WP_156170622.1\|60904_61597_-	FkbM family methyltransferase	NA	NA	NA	NA
WP_156170623.1\|61699_62870_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.5e-45	40.0
WP_047819485.1\|62895_63672_-	DUF2813 domain-containing protein	NA	NA	NA	NA
WP_047819486.1\|63759_64899_-	DNA cytosine methyltransferase	M1PSQ0	Streptococcus_phage	2.9e-62	36.9
WP_146029798.1\|64895_65087_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_047819487.1\|65207_66416_-\|integrase	site-specific integrase	A0A221SAN4	Ralstonia_phage	1.7e-36	30.7
WP_047819488.1\|66412_67585_-\|integrase	tyrosine-type recombinase/integrase	A0A221SAN4	Ralstonia_phage	2.5e-37	30.4
WP_169749280.1\|69007_70357_+\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_082134717.1\|70552_71731_+	bifunctional diguanylate cyclase/phosphodiesterase	NA	NA	NA	NA
WP_047819490.1\|71989_72565_+	PilZ domain-containing protein	NA	NA	NA	NA
WP_169749280.1\|72635_73985_+\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_047819491.1\|74268_74649_+	hypothetical protein	NA	NA	NA	NA
WP_169749281.1\|74731_75331_+	PilZ domain-containing protein	NA	NA	NA	NA
WP_156170624.1\|76305_77007_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
75840:75855	attR	NA	NA	NA	NA
WP_156170625.1\|77439_77892_+	hypothetical protein	NA	NA	NA	NA
75840:75855	attR	NA	NA	NA	NA
WP_047819496.1\|78020_78722_-	hypothetical protein	NA	NA	NA	NA
WP_047819497.1\|78718_79225_-	RNA polymerase sigma factor	NA	NA	NA	NA
WP_047819498.1\|79290_80514_+	S8 family serine peptidase	NA	NA	NA	NA
WP_053058906.1\|80618_81023_+	hypothetical protein	NA	NA	NA	NA
WP_053058907.1\|81026_81464_+	hypothetical protein	NA	NA	NA	NA
WP_053058908.1\|81596_82400_+	hypothetical protein	NA	NA	NA	NA
WP_156170626.1\|82717_84083_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_053058909.1\|84507_85335_+	GGDEF domain-containing protein	NA	NA	NA	NA
WP_047819503.1\|87897_95196_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_066561085.1\|95297_97436_+	sulfotransferase family protein	NA	NA	NA	NA
WP_047819505.1\|98852_99260_+	hypothetical protein	NA	NA	NA	NA
WP_047819506.1\|99675_99966_+	hypothetical protein	NA	NA	NA	NA
WP_047819507.1\|99955_100708_+	hypothetical protein	NA	NA	NA	NA
WP_047819508.1\|100708_103555_+	conjugative relaxase	NA	NA	NA	NA
WP_047819509.1\|103555_104842_-\|integrase	integrase arm-type DNA-binding domain-containing protein	Q8W6M6	Sinorhizobium_phage	1.7e-106	47.1
WP_047819510.1\|105353_106184_+	DUF1134 domain-containing protein	NA	NA	NA	NA
WP_047819511.1\|106308_107478_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_047819512.1\|107485_108004_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_047819513.1\|108000_108621_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.5e-20	37.8
WP_082135000.1\|108631_109576_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.6e-34	39.8
WP_156170628.1\|109589_110078_-	hypothetical protein	NA	NA	NA	NA
WP_156170879.1\|110145_110826_-	DUF45 domain-containing protein	NA	NA	NA	NA
WP_047819515.1\|110906_111395_-	YcgN family cysteine cluster protein	NA	NA	NA	NA
WP_082134720.1\|111382_112012_-	SCO family protein	NA	NA	NA	NA
WP_047822931.1\|112124_112748_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_047819516.1\|112755_113436_+	COQ9 family protein	NA	NA	NA	NA
WP_047819517.1\|113521_113827_+	ferrous iron transport protein A	NA	NA	NA	NA
WP_047819518.1\|113823_115674_+	ferrous iron transporter B	NA	NA	NA	NA
WP_047819519.1\|115840_116401_+	single-stranded DNA-binding protein	A0A0U2C0X4	Paracoccus_phage	8.4e-47	76.7
WP_047819520.1\|116407_116929_-	DUF177 domain-containing protein	NA	NA	NA	NA
WP_047819521.1\|116925_117435_-	ubiquinol-cytochrome C chaperone family protein	NA	NA	NA	NA
WP_047822933.1\|117651_118134_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_047819522.1\|118203_118782_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_047819523.1\|118796_120095_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A2H5BJT2	Erwinia_phage	5.3e-36	28.9
WP_047819524.1\|120134_120479_+	DUF2322 family protein	NA	NA	NA	NA
WP_047819525.1\|120489_121980_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	3.1e-157	61.2
WP_047819526.1\|122145_122547_+	GFA family protein	NA	NA	NA	NA
WP_047819527.1\|122553_124374_-	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	1.2e-49	29.2
WP_053058914.1\|124435_125365_-\|protease	aspartyl protease family protein	NA	NA	NA	NA
WP_082135001.1\|131198_132851_-	recombinase family protein	R9TP69	Rhizobium_phage	9.3e-86	37.0
WP_047819530.1\|132870_133095_-	hypothetical protein	NA	NA	NA	NA
WP_047819531.1\|133364_133664_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_047819532.1\|133668_134178_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_047822938.1\|134536_135469_-\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	3.9e-49	36.8

DBSCAN-SWA_2

459961 : 490267

Ralstonia_phage(25.0%)

integrase,transposase

attL 460766:460780|attR 475523:475537

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047819756.1\|459961_461125_-\|integrase	site-specific integrase	A0A221SAN4	Ralstonia_phage	6.4e-41	34.3
460766:460780	attL	NA	NA	NA	NA
WP_047819757.1\|461121_462114_-\|integrase	site-specific integrase	A0A221SAN4	Ralstonia_phage	9.7e-38	34.3
WP_047819758.1\|462716_462938_-	hypothetical protein	NA	NA	NA	NA
WP_156170886.1\|463177_463558_-	hypothetical protein	NA	NA	NA	NA
WP_047819760.1\|463738_464137_-	single-stranded DNA-binding protein	E8ZD59	Streptococcus_phage	1.1e-08	32.0
WP_156170623.1\|464837_466009_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.5e-45	40.0
WP_047819761.1\|466202_467420_-\|integrase	tyrosine-type recombinase/integrase	B7SYF8	Stenotrophomonas_phage	3.4e-85	40.4
WP_047819762.1\|467895_468843_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA
WP_047819763.1\|468845_469517_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_047819764.1\|469682_470228_+	NTP transferase domain-containing protein	NA	NA	NA	NA
WP_047819765.1\|470277_470760_+	UPF0262 family protein	NA	NA	NA	NA
WP_082134759.1\|470764_471475_+	glycoside hydrolase family 25 protein	NA	NA	NA	NA
WP_047823132.1\|471587_472142_+	dCTP deaminase	S5VM63	Pseudomonas_phage	1.8e-65	66.1
WP_047819767.1\|472164_473007_-	glutathione-dependent disulfide-bond oxidoreductase	NA	NA	NA	NA
WP_047819768.1\|473386_474625_+\|integrase	site-specific integrase	S5M9V8	Brevibacillus_phage	1.2e-05	26.9
WP_047819769.1\|475053_475974_-	mechanosensitive ion channel	NA	NA	NA	NA
475523:475537	attR	NA	NA	NA	NA
WP_053058944.1\|475976_479243_-	ATP-binding protein	NA	NA	NA	NA
WP_047819770.1\|479239_480127_-	mechanosensitive ion channel	NA	NA	NA	NA
WP_047819771.1\|480362_481205_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_047819772.1\|481258_482683_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_047819773.1\|482685_485874_-	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_047819774.1\|485877_487026_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_047819775.1\|487982_488606_-	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_047823140.1\|488617_490267_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.2e-111	44.3

DBSCAN-SWA_3

1477003 : 1506537

Sinorhizobium_phage(25.0%)

head,capsid,terminase,integrase,portal,tail

attL 1474987:1475003|attR 1512576:1512592

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1474987:1475003	attL	NA	NA	NA	NA
WP_047820552.1\|1477003_1479145_+\|terminase	phage terminase large subunit family protein	K7PH52	Enterobacterial_phage	5.1e-60	28.7
WP_047820553.1\|1479318_1479558_+	hypothetical protein	NA	NA	NA	NA
WP_047820554.1\|1479557_1481261_+\|portal	phage portal protein	A0A291AUT1	Sinorhizobium_phage	5.9e-51	30.4
WP_169749317.1\|1481247_1482651_+	S49 family peptidase	V5Q7L6	Xylella_phage	4.6e-33	40.2
WP_082134833.1\|1482709_1483081_+\|head	head decoration protein	A0A291AUM0	Sinorhizobium_phage	3.0e-16	56.8
WP_053059045.1\|1483170_1484205_+\|capsid	major capsid protein	A0A2D1GMR5	Marinobacter_phage	5.7e-41	34.6
WP_156170730.1\|1484357_1484726_+	hypothetical protein	NA	NA	NA	NA
WP_047820557.1\|1484729_1485089_+	hypothetical protein	NA	NA	NA	NA
WP_047820558.1\|1485090_1485876_+	hypothetical protein	NA	NA	NA	NA
WP_047820559.1\|1485875_1486343_+	hypothetical protein	NA	NA	NA	NA
WP_047820560.1\|1486373_1486622_+	hypothetical protein	NA	NA	NA	NA
WP_047820561.1\|1486653_1487817_+	hypothetical protein	NA	NA	NA	NA
WP_047820562.1\|1487824_1488448_+	hypothetical protein	NA	NA	NA	NA
WP_156170731.1\|1488612_1488777_+	hypothetical protein	NA	NA	NA	NA
WP_047820563.1\|1488795_1491609_+\|tail	phage tail length tape measure family protein	NA	NA	NA	NA
WP_047820564.1\|1491605_1492229_+	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	4.6e-46	47.1
WP_047820565.1\|1492229_1493183_+	DUF2163 domain-containing protein	NA	NA	NA	NA
WP_053059046.1\|1493179_1493614_+	C40 family peptidase	A0A0K1Y740	Rhodobacter_phage	3.0e-07	36.9
WP_047820566.1\|1493613_1496478_+	hypothetical protein	M4QNR6	Tetraselmis_viridis_virus	2.8e-37	28.8
WP_053059047.1\|1496490_1497843_+	DUF2793 domain-containing protein	F8TV94	EBPR_siphovirus	7.3e-28	43.9
WP_156170732.1\|1497854_1499258_+	hypothetical protein	NA	NA	NA	NA
WP_053059048.1\|1499265_1500120_-	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA
WP_156170733.1\|1500195_1500339_+	hypothetical protein	NA	NA	NA	NA
WP_047820569.1\|1500335_1500755_+	hypothetical protein	NA	NA	NA	NA
WP_047820570.1\|1500759_1501260_+	hypothetical protein	NA	NA	NA	NA
WP_053059049.1\|1501301_1501862_+	hypothetical protein	NA	NA	NA	NA
WP_047820571.1\|1501858_1502116_+	hypothetical protein	NA	NA	NA	NA
WP_047820572.1\|1502117_1502498_+	hypothetical protein	A0A2H4J4R3	uncultured_Caudovirales_phage	2.9e-11	39.6
WP_047820573.1\|1502494_1502968_+	hypothetical protein	NA	NA	NA	NA
WP_047820574.1\|1502964_1503192_+	hypothetical protein	NA	NA	NA	NA
WP_047820575.1\|1503188_1503509_+	hypothetical protein	NA	NA	NA	NA
WP_156170737.1\|1503420_1503813_+	hypothetical protein	NA	NA	NA	NA
WP_047820577.1\|1503960_1504767_+	DNA adenine methylase	A0A291AUP9	Sinorhizobium_phage	1.7e-88	63.8
WP_169749318.1\|1504794_1505043_+	hypothetical protein	NA	NA	NA	NA
WP_047823582.1\|1505283_1506537_+\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	5.1e-76	40.5
1512576:1512592	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2041852 : 2111765

Leptospira_phage(27.27%)

integrase,transposase

attL 2041840:2041899|attR 2100700:2101549

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2041840:2041899	attL	NA	NA	NA	NA
WP_156170784.1\|2041852_2042613_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	4.1e-12	34.9
WP_169749343.1\|2042914_2044954_+	TonB-dependent receptor	NA	NA	NA	NA
WP_047820934.1\|2045014_2045944_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_047820935.1\|2046058_2046592_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_082134886.1\|2046588_2047584_+	ornithine cyclodeaminase family protein	NA	NA	NA	NA
WP_037486818.1\|2047598_2048693_+	AraC family ligand binding domain-containing protein	NA	NA	NA	NA
WP_081796453.1\|2048692_2049535_+	2-oxo-hepta-3-ene-1,7-dioic acid hydratase	NA	NA	NA	NA
WP_037486817.1\|2049558_2050359_+	4-hydroxy-2-oxoheptanedioate aldolase	NA	NA	NA	NA
WP_047820936.1\|2050379_2051756_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_047823845.1\|2052036_2052837_+	2-oxo-hepta-3-ene-1,7-dioic acid hydratase	NA	NA	NA	NA
WP_007015354.1\|2052865_2053636_+	alpha-dehydro-beta-deoxy-D-glucarate aldolase	NA	NA	NA	NA
WP_053059275.1\|2053700_2054798_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_047820938.1\|2054866_2057326_+	TonB-dependent receptor	NA	NA	NA	NA
WP_047820939.1\|2057798_2058596_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_037486800.1\|2058652_2059888_+	dienelactone hydrolase family protein	NA	NA	NA	NA
WP_156170623.1\|2061569_2062740_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.5e-45	40.0
WP_082134888.1\|2062765_2062939_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_169749344.1\|2063015_2064191_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_047820943.1\|2064126_2065035_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_053059114.1\|2065279_2065855_-	hypothetical protein	NA	NA	NA	NA
WP_082134890.1\|2065895_2067236_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_053059115.1\|2067251_2067851_-	2-hydroxychromene-2-carboxylate isomerase	NA	NA	NA	NA
WP_156170913.1\|2067861_2068791_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_047823857.1\|2068880_2071295_-	TonB-dependent receptor	NA	NA	NA	NA
WP_047820947.1\|2072725_2073634_-	VOC family protein	NA	NA	NA	NA
WP_047820948.1\|2073683_2074169_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_047820949.1\|2075442_2076504_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_047820950.1\|2077204_2077519_-	non-heme iron oxygenase ferredoxin subunit	NA	NA	NA	NA
WP_169749280.1\|2077954_2079304_+\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_047823859.1\|2079480_2080386_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_156170746.1\|2080452_2081623_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	4.5e-50	42.8
WP_169749345.1\|2083181_2083847_-	hypothetical protein	NA	NA	NA	NA
WP_047823865.1\|2085583_2086048_-	PIN domain-containing protein	NA	NA	NA	NA
WP_047820953.1\|2086047_2086278_-	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
WP_047820954.1\|2087699_2088209_-	hypothetical protein	NA	NA	NA	NA
WP_047820955.1\|2088205_2088499_-	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_082134893.1\|2088851_2090195_+\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A1B0VMI6	Pseudomonas_phage	2.5e-81	42.0
WP_047820956.1\|2090500_2091733_-	dienelactone hydrolase family protein	NA	NA	NA	NA
WP_053059118.1\|2092767_2093370_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_047820957.1\|2093792_2094200_+\|transposase	transposase	NA	NA	NA	NA
WP_047820958.1\|2094196_2094550_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_053059119.1\|2094618_2095206_+\|transposase	IS66 family transposase zinc-finger binding domain-containing protein	S5VTD3	Leptospira_phage	1.4e-15	34.0
WP_047820959.1\|2095420_2096458_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_053059120.1\|2096550_2097117_+\|transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	3.2e-30	39.8
WP_053059121.1\|2097155_2097539_+\|transposase	transposase	NA	NA	NA	NA
WP_047823873.1\|2098730_2099459_+	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	5.8e-32	33.1
WP_047820960.1\|2099486_2099906_-\|transposase	IS200/IS605 family transposase	G9CU69	Helicobacter_phage	3.8e-20	35.1
WP_053059122.1\|2099978_2100524_-	DUF4102 domain-containing protein	A0A291LA13	Bordetella_phage	3.5e-05	36.6
WP_156170784.1\|2100712_2101473_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	4.1e-12	34.9
WP_179944972.1\|2102108_2102939_-	aldo/keto reductase	NA	NA	NA	NA
2100700:2101549	attR	NA	NA	NA	NA
WP_047820963.1\|2103014_2103635_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_009823890.1\|2103731_2104721_+	zinc-dependent alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_047820964.1\|2104923_2105214_+	metal/formaldehyde-sensitive transcriptional repressor	NA	NA	NA	NA
WP_156170787.1\|2105330_2106084_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_156170788.1\|2106113_2107075_-\|transposase	IS630 family transposase	A0A1V0SCG6	Indivirus	2.7e-13	24.4
WP_047820966.1\|2107140_2108121_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_024717194.1\|2108355_2108649_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_047820968.1\|2109343_2110441_+	alkene reductase	NA	NA	NA	NA
WP_047820969.1\|2110553_2110949_+	heme-binding protein	NA	NA	NA	NA
WP_156170914.1\|2111008_2111765_+\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

3015168 : 3032971

Stx2-converting_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047823140.1\|3015168_3016818_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.2e-111	44.3
WP_047819776.1\|3016891_3017233_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	3.9e-31	57.3
WP_047819777.1\|3017229_3017595_-\|transposase	transposase	NA	NA	NA	NA
WP_082134965.1\|3017672_3017897_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_169749367.1\|3018000_3019350_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_082134966.1\|3019428_3020661_-	diguanylate cyclase	NA	NA	NA	NA
WP_156170621.1\|3020990_3021763_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.9e-25	46.1
WP_082134967.1\|3022307_3022700_+	PilZ domain-containing protein	NA	NA	NA	NA
WP_156170621.1\|3025353_3026126_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.9e-25	46.1
WP_047822127.1\|3026420_3028085_+	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA
WP_156170842.1\|3028132_3029941_+	autotransporter domain-containing protein	NA	NA	NA	NA
WP_082134968.1\|3032065_3032971_+\|transposase	IS1595 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

3208760 : 3232203

Stx2-converting_phage(33.33%)

integrase,transposase,protease

attL 3196039:3196055|attR 3236298:3236314

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3196039:3196055	attL	NA	NA	NA	NA
WP_047822363.1\|3208760_3209162_+\|transposase	transposase	A0A1B0YZU7	Pseudomonas_phage	7.4e-05	44.0
WP_047822365.1\|3209158_3209506_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	3.3e-33	58.9
WP_047822367.1\|3209590_3211114_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.1e-120	47.0
WP_047822368.1\|3211110_3211713_+	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_156170856.1\|3211704_3212187_-	hypothetical protein	NA	NA	NA	NA
WP_047822373.1\|3212458_3212974_+	hypothetical protein	NA	NA	NA	NA
WP_047822375.1\|3213277_3213520_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_047822378.1\|3213608_3215369_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_169749374.1\|3215335_3216448_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_053059218.1\|3216814_3218605_+	recombinase family protein	A0A097BYD1	Leuconostoc_phage	3.5e-22	25.8
WP_089217550.1\|3219441_3219810_+	lasso peptide biosynthesis B2 protein	NA	NA	NA	NA
WP_047822384.1\|3219809_3221360_+	hypothetical protein	NA	NA	NA	NA
WP_052208628.1\|3221290_3221941_-	hypothetical protein	A0A0E3FKE3	Synechococcus_phage	7.0e-21	45.4
WP_039581785.1\|3222121_3222607_-	hypothetical protein	NA	NA	NA	NA
WP_047822388.1\|3223705_3224080_+	hypothetical protein	NA	NA	NA	NA
WP_047822390.1\|3224151_3224670_+	MmcB family DNA repair protein	B2ZY91	Ralstonia_phage	7.9e-07	43.8
WP_082135071.1\|3224814_3225507_+	sterol desaturase family protein	NA	NA	NA	NA
WP_169749375.1\|3225503_3225935_+	DUF2141 domain-containing protein	NA	NA	NA	NA
WP_047822393.1\|3226000_3226846_+	CoA ester lyase	NA	NA	NA	NA
WP_053059219.1\|3226920_3227778_+	hypothetical protein	NA	NA	NA	NA
WP_047822394.1\|3227834_3228962_+	DUF2183 domain-containing protein	NA	NA	NA	NA
WP_047822396.1\|3229032_3230403_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_053059220.1\|3230413_3231202_+	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_053059221.1\|3231201_3232203_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
3236298:3236314	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage