CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP011809	Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-2, complete sequence	1 crisprs	NA	1	1
NZ_CP011808	Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-1, complete sequence	0 crisprs	NA	0	4
NZ_CP011807	Pandoraea faecigallinarum strain DSM 23572 chromosome, complete genome	2 crisprs	csa3,WYL,DEDDh,DinG	0	5

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011809_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011809_1

37198-37328

Orphan

Consensus_repeat	Method
CTCGTAGGCTTTTCGGGCCTGATCGGGCTGTTGCGCTTGCGTGTAGGATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011809_1

>merge|NZ_CP011809|1|37198-37328|CRISPRCasFinder
CTCGTAGGCTTTTCGGGCCTGATCGGGCTGTTGCGCTTGCGTGTAGGATTCTGCGGCCTTCCAATAGGCGTCTGCGGCCATCTCGTAGGCTTTTCGGGCCTGATCGGGCTGTTGCGCTTGTGTGTAGGATT

>NZ_CP011809|1|1|37198-37328|CRISPRCasFinder
CTCGTAGGCTTTTCGGGCCTGATCGGGCTGTTGCGCTTGCGTGTAGGATT	CTGCGGCCTTCCAATAGGCGTCTGCGGCCAT
CTCGTAGGCTTTTCGGGCCTGATCGGGCTGTTGCGCTTGTGTGTAGGATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011809.2\|WP_047909438.1\|53936_55817_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|289998
NZ_CP011809.2\|WP_047909497.1\|33754_36007_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011809.2\|WP_157112220.1\|25484_26283_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP011809.2\|WP_071386935.1\|48465_49434_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011809.2\|WP_047906187.1\|58150_59185_-\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NZ_CP011809.2\|WP_047909496.1\|40410_41148_-\|IS6-family-transposase	unknown	unknown	gnl\|CDD\|225853
NZ_CP011809.2\|WP_047909499.1\|41419_41710_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011809.2\|WP_047909496.1\|31499_32237_+\|IS6-family-transposase	unknown	unknown	gnl\|CDD\|225853
NZ_CP011809.2\|WP_167362763.1\|24884_25181_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011809.2\|WP_167362764.1\|42152_42951_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP011809.2\|WP_047909494.1\|29844_30108_-\|DUF2274-domain-containing-protein	unknown	unknown	gnl\|CDD\|370791
NZ_CP011809.2\|WP_047909493.1\|27521_29489_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011809.2\|WP_047908873.1\|51459_52965_-\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP011809.2\|WP_047909491.1\|23204_24107_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225316
NZ_CP011809.2\|WP_047909502.1\|42981_43251_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011809.2\|WP_047909495.1\|30974_31418_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011809.2\|WP_157112220.1\|30167_30966_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP011809.2\|WP_047907355.1\|50669_51467_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NZ_CP011809.2\|WP_064674971.1\|22384_23125_+\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|379319
NZ_CP011809.2\|WP_047909500.1\|41706_41991_+\|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family	unknown	unknown	gnl\|CDD\|226194

Protein	Function_ID	Function_description	E-value
NZ_CP011809.2\|WP_047909438.1\|53936_55817_-\|metallophosphoesterase	gnl\|CDD\|289998	pfam13258, DUF4049, Domain of unknown function (DUF4049). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is typically between 310 and 324 amino acids in length.	0.00144044
NZ_CP011809.2\|WP_047906187.1\|58150_59185_-\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	7.45471e-45
NZ_CP011809.2\|WP_047909496.1\|40410_41148_-\|IS6-family-transposase	gnl\|CDD\|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	5.82257e-58
NZ_CP011809.2\|WP_047909496.1\|31499_32237_+\|IS6-family-transposase	gnl\|CDD\|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	5.82257e-58
NZ_CP011809.2\|WP_157112220.1\|25484_26283_-\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	4.05324e-21
NZ_CP011809.2\|WP_167362764.1\|42152_42951_+\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	3.93201e-21
NZ_CP011809.2\|WP_047909494.1\|29844_30108_-\|DUF2274-domain-containing-protein	gnl\|CDD\|370791	pfam10038, DUF2274, Protein of unknown function (DUF2274). Members of this family of hypothetical bacterial proteins have no known function.	1.77732e-05
NZ_CP011809.2\|WP_047907355.1\|50669_51467_-\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	2.0266e-63
NZ_CP011809.2\|WP_047908873.1\|51459_52965_-\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.34529e-16
NZ_CP011809.2\|WP_157112220.1\|30167_30966_+\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	4.05324e-21
NZ_CP011809.2\|WP_047909491.1\|23204_24107_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|225316	COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones].	5.17957e-31
NZ_CP011809.2\|WP_064674971.1\|22384_23125_+\|2OG-Fe(II)-oxygenase	gnl\|CDD\|379319	pfam13661, 2OG-FeII_Oxy_4, 2OG-Fe(II) oxygenase superfamily. This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.	6.36835e-20
NZ_CP011809.2\|WP_047909500.1\|41706_41991_+\|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	8.03443e-16

>NZ_CP011809.2|WP_047909497.1|33754_36007_+|hypothetical-protein
MPLDPPTSAQSAGVYAGTAADEPLVFEFYENDGTYKQFFITVEDMQKADPAAWNHWFNKIWNSICDYFSGPRVAGAQINEANTFFHAAVSAKDDVTKAKNYFALKAMATLETQRTRFSEVYNATTGLVTLGIEARLGKGPGVAMTVEASALPSEAIAILDLPQDVMTAALEREAKRDSGQPVQANSVEGGVAPVCTTTHQFDGTAYLTDWANRVCTLPDKEILEDPARERGAAAPRLQYWLDLSNFEPPVHGQCVYELELNDGLGPATSKNVWTEGADVAANLEFANRLHRAQTLTPAQVNSTAFLMLADNSVQELMNEAAARDPRFDRSANGWMCKNNFSISHHGTHMVMSITSESQLSDEQLHMDTGAGPDAPLVHQEVTYRQKWVITPDGQMRCLFATAAKSVSLLDALNDDVIAVHAPDVDDPHTAALKRRYDALGDKARHSLASCTSLRNFLKEARAFLSGDNARFNERVAHYLMGKLTVLPKGLPKPQPDIPDEVKNELRNLLRTHRYGIFGIPETPEKTIAKLYSLDLKLLDEGIDLEYKRLSAKDHPSEQVPQNGIDVSPVDTMQDTQGHIAERPRVVAARVSAPNAGDLTAATGQPPHMTFPEAATGLVPTSLMTADTNVPNASIVVQDSSGMAVKRRGENAKPQDYFGSIWPKIDKWFTLLDGGAARELLGYVLREGTSVDDRLTCLDNLRHLALGHHKTAIRPEVDGDIVSLVIDDVFTMTLNRPTGRGIFQSGLDLPD
>NZ_CP011809.2|WP_047909496.1|31499_32237_+|IS6-family-transposase
MKKFSVSPQRSSDAAISFKGYRFPPDIIRYAVWLYYRFPLSLRMVEEMLAARGIELTYETVRCWATKFGLAIAGRIRSTSPRRGDKWHLDEVVVTIHGKKHWLWRAVDEHGALLEVLVQSRRDTAAAKRLMRRLLKRHGGARVIVTDKLRSYAAAHRELRLSVEHRQHKGLNNRAENSHQPTRVREKVMRRFKSARQLQRFASIHGQVSNLFMACRYHRNAEQKRAARTQAFAAWEWACSTRMAA
>NZ_CP011809.2|WP_047909495.1|30974_31418_-|hypothetical-protein
MFGVAAVIATKAYKWIAPILLGRRKGETLPERVKRVADDQERDRIKQRALNMGRERALHVRSINVGVLFAFMVLVGTVLPRVGFPCKQEVVLAFGAYVIVGYLAGLLFKVVPAEAMAGLNWNSRLDVRLYYVWLWPLNVYKRITRKH
>NZ_CP011809.2|WP_157112220.1|30167_30966_+|IS5-family-transposase
MTRKKYASDISREKFSEIEPLLRSVRRRTKPTTVDLYEVFCAVLYLLRTGCQWRFLPSEFPKWQTVYAYFSKWSQPDQHGVSVLEQALKNQVGAARTRQGRSASTTFLIVDAQSVKNTDTAAHKGYDAGKKVSGIKRHIAVDTQGLPHAVAVTTAEVTDRKGALLAFEHGKPRLGQVQSVLVDGGYVGEPFAQGVREILGERVTVQIAKRSELHTFKVLPQRWVVERSFAWLEKNRRLWKNCERLLNTSLQFVHLAFLALLLRRS
>NZ_CP011809.2|WP_047909494.1|29844_30108_-|DUF2274-domain-containing-protein
MKQKPPRSSSPRLMLPIVKREPEKTKLQMNLSQAVHDELRAYQRAYQEMNETEISLDFIIEHVLVQHMKRDKAFQTWKVTNAGKAGE
>NZ_CP011809.2|WP_047909493.1|27521_29489_-|hypothetical-protein
MAIESTSRAYNTTGTTPIDQVLLARIELEERADAEVGKEMEALYFAPPGDNAQIILTVGKDECAAVADKDPHFQSDPGGALLRQMTRKIQKALEDNGEPADIACVKARDIARHLGCKAFVNADHLLASQDGSQKMHRQAIHVSIDDNKVHIHKTTTYTTINPARSVFGPQSNEPVTQVVDLAMQFTSTGDCVEAEVIKAAVRVAESPDLSVKSLVEDTKKLFGVPAASPASNDFLACLKDLYHLLSGIFLGARRIKFVVGDVEEVARVDPDAAARPDGISLDRLGLDENFDKTAWLASASKAYGRFKHAVTYQYDNDNVHVTRNRGPALDAQTQRKAIDEWARATLEKKERTLRTDRNLHVGNPLTFWGVPSLPKGTYAYATAHVAELAQAADLGSSEGDAKLFEEVCAALDGALFPAPGTERVVIKIDGNDIMDARMRGACQRLRGVETFAAESEVPDDFRETLRDVVRIGGLPSHTSVEQIATVKTALFSAVIGRIKEACPNEATQRQMFATIARGPAAMQIVRDINGEPTVKDNRNEKYRVAISTRKTMPALRDDAVGISFYSGHTRLSAEAKVYFFGDKFFESDSLTTTRAVTTAFFEVTDKNTRMTDATYQGDFVLRDKSKVPDRKLRKEFREMRETVKLAMKRNRRKSV
>NZ_CP011809.2|WP_157112220.1|25484_26283_-|IS5-family-transposase
MTRKKYASDISREKFSEIEPLLRSVRRRTKPTTVDLYEVFCAVLYLLRTGCQWRFLPSEFPKWQTVYAYFSKWSQPDQHGVSVLEQALKNQVGAARTRQGRSASTTFLIVDAQSVKNTDTAAHKGYDAGKKVSGIKRHIAVDTQGLPHAVAVTTAEVTDRKGALLAFEHGKPRLGQVQSVLVDGGYVGEPFAQGVREILGERVTVQIAKRSELHTFKVLPQRWVVERSFAWLEKNRRLWKNCERLLNTSLQFVHLAFLALLLRRS
>NZ_CP011809.2|WP_167362763.1|24884_25181_+|hypothetical-protein
MHIASAKITSTLRCLDDLRPTALKVRDLRIFPGGYAPVMGIEHGRRLVKSMRYQCRSAGKPANYDTRIPGNCNARRDKLEGFWQGQFGVMHGVIQARG
>NZ_CP011809.2|WP_047909491.1|23204_24107_+|methyltransferase-domain-containing-protein
MGYSVGPSTERVRAIYARQILALANASENRRLEQAFAAVPRETFLGEDRWQILTSLAGYTPLPENDPVLIYQDVVVGLATPRGVNNGSPALHARWLNAMAPQRGEVVAHIGAGTGYYTAILAELVGSTGRVIAVEYDNDRCTRALKNLAHRSNVQVVHADGAAYPVEPVDGVYVNFGVARPARPWIDRLKPGGRLVLPLGAPEKQDFLPGRFAAQAIGLLVTRVDNGFAAASLGPASFIFAEGDLGATTEEINALRVSLQNANDGKIRSLLWDRRPTGAVWLAASNWALSFEAPVRVGGR
>NZ_CP011809.2|WP_064674971.1|22384_23125_+|2OG-Fe(II)-oxygenase
MEVRPKIAAEIAQLRQAFRESGAVLVEEVLDEAGARDAHQRLASHQEWFITIKEPARVSGRGCTEWRVAEWERMSARQKRTIINDLHERAAASFEMYFKQYPLIEKFRIGEDGDIPMMRIARLLVSGAFLELIGNITGIDGLTDVTGMASRFDAGHFILSHTDRQPEGSVGRREVAFVLYLTEGWRDDWGAHTCLWSEGASAAVCIPPRFNTMLIFRVPRAHSVLYVPPFVTASRLALAGWAYSRT
>NZ_CP011809.2|WP_047909496.1|40410_41148_-|IS6-family-transposase
MKKFSVSPQRSSDAAISFKGYRFPPDIIRYAVWLYYRFPLSLRMVEEMLAARGIELTYETVRCWATKFGLAIAGRIRSTSPRRGDKWHLDEVVVTIHGKKHWLWRAVDEHGALLEVLVQSRRDTAAAKRLMRRLLKRHGGARVIVTDKLRSYAAAHRELRLSVEHRQHKGLNNRAENSHQPTRVREKVMRRFKSARQLQRFASIHGQVSNLFMACRYHRNAEQKRAARTQAFAAWEWACSTRMAA
>NZ_CP011809.2|WP_047909499.1|41419_41710_+|hypothetical-protein
MSKAVFTMKLEPELRDAFMAEAEATHRPASQVVRELMRDFVQRQRETREYDEFLRRKVEAARISMRTGRGRSNEEVEAEATARRVALLHKANKAGL
>NZ_CP011809.2|WP_047909500.1|41706_41991_+|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family
MRIIWTPEAEQDRDDVCEYIAPDNPRAAAHMDQLFSDAAARLADHPKLGRAGKIAGTRELFPHENYRLVYEIDGETVWLLALVHTARQWPPPRE
>NZ_CP011809.2|WP_167362764.1|42152_42951_+|IS5-family-transposase
MTRKKYASDISREKFSEIEPLLRSVRRRTKPTTVDLYEVFCAVLYLLRTGCQWRFLPSEFPKWQTVYAYFSKWSQPDQHGVSVLEQALKNQIGAARTRQGRSASTTFLIMDAQSVKNTDTAAHKGYDAGKKVSGIKRHIAVDTQGLPHAVAVTTAEVTDRKGALLAFEHGKPRLGQVQSVLVDGGYVGEPFAQGVREILGERVTVQIAKRSELHTFKVLPQRWVVERSFAWLEKNRRLWKNCERLLNTSLQFVHLAFLALLLRRS
>NZ_CP011809.2|WP_047909502.1|42981_43251_+|hypothetical-protein
MSLLKNRLAATDEKLAALKEARKTADKARRKTMKESRADRERKLRLIGEAVLQRVASGEWDEDDFRTMMDAALARPADRALFELEESDN
>NZ_CP011809.2|WP_071386935.1|48465_49434_-|hypothetical-protein
MSSVVFGGAAYKTHLTVKREDDKESAESSDKNKGATDNQNTDIKQAKINREHWKTASSVGMRFVEVNKGHEVNMPGPPLKEVLNLHKLNVSLLETTVMVKLDEGVSLKKQLFHGCALGGVRQLYLGLKEVIWKSDDYKQLGNILGHDLHLLETLVIDMDLFHHARELPSNPDSSVKAVFRGIGNLKKLENLNISFNYSKEIEDYDNVFGDFGSQLGKLGQYNKIYTLKISMQQNKIDNAEMLRLFRGISEMKSLKSLTIDLRGSHEFDQTGFDPLVGPLKKLNNLSSLTMNLDSDIDATVLHAALSAKGSEKPVKVDITSGW
>NZ_CP011809.2|WP_047907355.1|50669_51467_-|ATP-binding-protein
MSNDITAQLKGLKLHGMASSWPELLAQSRHTEFDPERFMKQLLMAETAERQVRSIAYQMTAARFPAHRDLTGFDFGQAHVDEVLVRELHDLTFLSSAHNVVFIGGPGTGKTHLATAIGIQAVQRQGKRVRYFSTVELTNALEQEKAIGKQGQIAHKLMYVDMVILDELGYLPFSQTGGALLFHLLSKLYEHTSVAITTNLSFGEWASVFGDAKMTTALLDRVTHHCHIVETGNESWRFKTSSAKSRVSRKTALKGTETDDLSTQK
>NZ_CP011809.2|WP_047908873.1|51459_52965_-|IS21-family-transposase
MGMLAKIRRMYIREKVPLREIARRTGLSRNTIRSWLRQPDAVEPHYPKRNGLSVVDEWAEQLSGWLCTDSHRPKRDRRTARFMFEAIRSQGYAGSYARVSAFVRHWHEAQSQAPRTKAYVPLAFDPGEAFQFDWSCEYAFVGGLRRRLEVAHVKLNASRAFWLVAYPTQSHEMLFDAHARAFAAFGGVPRRGIYDNMKTAVDKVGRGKERAINARFEAMCGHYLFEPEFCNRAAGWEKGIVEKNVQDRRRQIWHEAAERRWETLATLNEWVADQCLCAWQGKHPQWPEITIADALQDERTKLMPNPKPFDGYVEQTLRVSSTSLIHFQRNRYSVPSSLTNQVVSVRSYPTYLSIVSEGQEVARHERSFERYLTFYDWRHYIDLVERKPGALRNGAPFATMPVPLQRLQHYLLKQPGGDRVMTQVLAAVRDHGLDAVLTAVKITLESGRPSAEHVINVLSRLKTPVGPLLPTPTKLHLTEEPLADVDRYERLRPNAPENRHV
>NZ_CP011809.2|WP_047909438.1|53936_55817_-|metallophosphoesterase
MVLDPQVRLRSASVNSTSLAPQNNGIGDAMSQALVDCTYELSKVTRVLTDSVKGGFIDQGLRNCETAITELKQHCAQPQAAPDKILTSISKAVDGVEEVLQEVQKRKLGPDVAEKVLEKLGTLIGILVAVGVWAVAPYLLASSAAVWGFGGLVALSAVVLGGIGQAWGENRANAYKDFAAAVTVADPEPRLASMRAAAIRTEAAYTMASIAADLDADTRNYVESLLDIPALDKPAVSRAHPEVIAGGDGDGSAVRAIMLAIQAGVIRIKSARGRALVCQLLKAEARAVRERHGPNFVAYQENEEYRAALRELKNHLDFRRGVTELIFVGDVCHDRFSLDKDVECWLREQLAAMGVITLFGNHDDHRVTQEYQLKADPSAGKMSTYGDFAWSTKKLKDWIAHEKKVFRHAYFSKSTNILFTHQGLRPGPNGTLWYAGGFLRAADYKDNPEKLVADIQAGKRIKLSEKKGELTRAEKSMIMGILRESSAGRDFIANSDIQTRAPNYTRLEPVEFPNGYPDDLPEDAWWKAPEGVDWQYAAQLAESEAVRVSFQTSFRPSQADCECVSKLLGCGVAHGHDGVADLQKRSALGLNARAGENWDYKPSACAIYAPPNGAVAIRRRRQTWSV
>NZ_CP011809.2|WP_047906187.1|58150_59185_-|IS630-family-transposase
MKCKRLSDGRKLDHHTLQVMRQQAVKAVRAGEAVANVAAAYGLSVRTIFSWLAKFADGGQNALLAKPISGRPPKISADEMRWIAQAVRENSPQQFKFEFGLWTLSLIGELIKRQFGKTLALASVSRVMKLLGFSVQKPLYQAWQQDAKLVQQWEAETYPAIKAQARAEGATIYFADEAGIRSDYHTGTTWAPIGQTPVVTVTGRRFSLNMISAVSPRGDFRFMIHEGSVSSRTFKEFLTRLMIGATKPVFLIVDGHPIHKSKLVKDYVASLDGRLKLFYLPPYAPQLNPDEQVWAHVKRQVSRRLVQNSDDMKKLALGALRRIQKLPELVKSFFQQPECQYAAQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP011809_1	1.1\|37248\|31\|NZ_CP011809\|CRISPRCasFinder	37248-37278	31	NZ_CP011809	Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-2, complete sequence	37248-37278	0	1.0
NZ_CP011809_1	1.1\|37248\|31\|NZ_CP011809\|CRISPRCasFinder	37248-37278	31	NZ_CP011809	Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-2, complete sequence	37329-37359	3	0.903
NZ_CP011809_1	1.1\|37248\|31\|NZ_CP011809\|CRISPRCasFinder	37248-37278	31	NZ_CP048281	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248e, complete sequence	323723-323753	10	0.677
NZ_CP011809_1	1.1\|37248\|31\|NZ_CP011809\|CRISPRCasFinder	37248-37278	31	NC_012848	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence	77467-77497	10	0.677
NZ_CP011809_1	1.1\|37248\|31\|NZ_CP011809\|CRISPRCasFinder	37248-37278	31	NZ_CP050081	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence	215309-215339	10	0.677
NZ_CP011809_1	1.1\|37248\|31\|NZ_CP011809\|CRISPRCasFinder	37248-37278	31	NZ_CP049731	Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence	211964-211994	10	0.677
NZ_CP011809_1	1.1\|37248\|31\|NZ_CP011809\|CRISPRCasFinder	37248-37278	31	NZ_CP018229	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence	664914-664944	10	0.677
NZ_CP011809_1	1.1\|37248\|31\|NZ_CP011809\|CRISPRCasFinder	37248-37278	31	NZ_CP054022	Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence	91782-91812	10	0.677
NZ_CP011809_1	1.1\|37248\|31\|NZ_CP011809\|CRISPRCasFinder	37248-37278	31	NZ_CP054032	Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence	1052178-1052208	10	0.677
NZ_CP011809_1	1.1\|37248\|31\|NZ_CP011809\|CRISPRCasFinder	37248-37278	31	NZ_CP053206	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence	211941-211971	10	0.677

1. spacer 1.1|37248|31|NZ_CP011809|CRISPRCasFinder matches to NZ_CP011809 (Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-2, complete sequence) position: , mismatch: 0, identity: 1.0

ctgcggccttccaataggcgtctgcggccat	CRISPR spacer
ctgcggccttccaataggcgtctgcggccat	Protospacer
*******************************

2. spacer 1.1|37248|31|NZ_CP011809|CRISPRCasFinder matches to NZ_CP011809 (Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-2, complete sequence) position: , mismatch: 3, identity: 0.903

ctgcggccttccaataggcgtctgcggccat	CRISPR spacer
ttgcggccctccaataggcgtctgcggccag	Protospacer
.*******.*********************

3. spacer 1.1|37248|31|NZ_CP011809|CRISPRCasFinder matches to NZ_CP048281 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248e, complete sequence) position: , mismatch: 10, identity: 0.677

ctgcggccttccaataggcgtctgcggccat	CRISPR spacer
tccatatcttccaataggcgactgccgccaa	Protospacer
..   ..************* **** ****

4. spacer 1.1|37248|31|NZ_CP011809|CRISPRCasFinder matches to NC_012848 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence) position: , mismatch: 10, identity: 0.677

ctgcggccttccaataggcgtctgcggccat	CRISPR spacer
tccatatcttccaataggcgactgccgccaa	Protospacer
..   ..************* **** ****

5. spacer 1.1|37248|31|NZ_CP011809|CRISPRCasFinder matches to NZ_CP050081 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence) position: , mismatch: 10, identity: 0.677

ctgcggccttccaataggcgtctgcggccat	CRISPR spacer
tccatatcttccaataggcgactgccgccaa	Protospacer
..   ..************* **** ****

6. spacer 1.1|37248|31|NZ_CP011809|CRISPRCasFinder matches to NZ_CP049731 (Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence) position: , mismatch: 10, identity: 0.677

ctgcggccttccaataggcgtctgcggccat	CRISPR spacer
tccatatcttccaataggcgactgccgccaa	Protospacer
..   ..************* **** ****

7. spacer 1.1|37248|31|NZ_CP011809|CRISPRCasFinder matches to NZ_CP018229 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.677

ctgcggccttccaataggcgtctgcggccat	CRISPR spacer
tccatatcttccaataggcgactgccgccaa	Protospacer
..   ..************* **** ****

8. spacer 1.1|37248|31|NZ_CP011809|CRISPRCasFinder matches to NZ_CP054022 (Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence) position: , mismatch: 10, identity: 0.677

ctgcggccttccaataggcgtctgcggccat	CRISPR spacer
tccatatcttccaataggcgactgccgccaa	Protospacer
..   ..************* **** ****

9. spacer 1.1|37248|31|NZ_CP011809|CRISPRCasFinder matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 10, identity: 0.677

ctgcggccttccaataggcgtctgcggccat	CRISPR spacer
tccatatcttccaataggcgactgccgccag	Protospacer
..   ..************* **** ****

10. spacer 1.1|37248|31|NZ_CP011809|CRISPRCasFinder matches to NZ_CP053206 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence) position: , mismatch: 10, identity: 0.677

ctgcggccttccaataggcgtctgcggccat	CRISPR spacer
tccatatcttccaataggcggctgccgccaa	Protospacer
..   ..************* **** ****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

11644 : 83449

Streptococcus_phage(33.33%)

transposase,integrase

attL 65835:65894|attR 87431:88277

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047909179.1\|11644_12664_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_047906141.1\|12857_13913_-\|transposase	IS481 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	2.4e-127	62.6
WP_047909482.1\|14168_14873_+	hypothetical protein	NA	NA	NA	NA
WP_047909519.1\|14921_15275_+	hypothetical protein	NA	NA	NA	NA
WP_047909483.1\|15361_15595_-	hypothetical protein	NA	NA	NA	NA
WP_047906141.1\|15778_16834_+\|transposase	IS481 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	2.4e-127	62.6
WP_047909484.1\|17287_17500_-	hypothetical protein	NA	NA	NA	NA
WP_047909485.1\|17795_18074_+	hypothetical protein	NA	NA	NA	NA
WP_157112545.1\|18158_19727_+	hypothetical protein	NA	NA	NA	NA
WP_047909487.1\|19833_20568_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	2.1e-21	33.0
WP_047909488.1\|21957_22194_+	hypothetical protein	NA	NA	NA	NA
WP_064674971.1\|22384_23125_+	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_047909491.1\|23204_24107_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_167362763.1\|24884_25181_+	hypothetical protein	NA	NA	NA	NA
WP_157112220.1\|25484_26283_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_047909493.1\|27521_29489_-	hypothetical protein	NA	NA	NA	NA
WP_047909494.1\|29844_30108_-	DUF2274 domain-containing protein	NA	NA	NA	NA
WP_157112220.1\|30167_30965_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_047909495.1\|30974_31418_-	hypothetical protein	NA	NA	NA	NA
WP_047909496.1\|31499_32237_+\|transposase	IS6 family transposase	A0A1X9I6E7	Streptococcus_phage	4.5e-24	35.5
WP_047909497.1\|33754_36007_+	hypothetical protein	NA	NA	NA	NA
WP_157112546.1\|36936_38112_-	hypothetical protein	NA	NA	NA	NA
WP_047909496.1\|40410_41148_-\|transposase	IS6 family transposase	A0A1X9I6E7	Streptococcus_phage	4.5e-24	35.5
WP_047909499.1\|41419_41710_+	hypothetical protein	NA	NA	NA	NA
WP_047909500.1\|41706_41991_+	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA	NA	NA	NA
WP_167362764.1\|42152_42950_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_047909502.1\|42981_43251_+	hypothetical protein	NA	NA	NA	NA
WP_071386935.1\|48465_49434_-	hypothetical protein	NA	NA	NA	NA
WP_047907355.1\|50669_51467_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	4.9e-32	35.9
WP_047908873.1\|51459_52965_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	3.8e-17	27.9
WP_047909438.1\|53936_55817_-	metallophosphoesterase	NA	NA	NA	NA
WP_047906187.1\|58150_59185_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_174554750.1\|59560_60787_+	AAA family ATPase	A0A1I9KF58	Aeromonas_phage	1.1e-30	28.6
WP_053059786.1\|60783_61803_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_053059787.1\|62116_63469_+	hypothetical protein	NA	NA	NA	NA
WP_047909440.1\|63991_64321_-	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
WP_174554751.1\|64292_64556_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_047909442.1\|65014_65758_+\|transposase	IS6 family transposase	A0A1X9I6E7	Streptococcus_phage	4.6e-24	35.5
65835:65894	attL	NA	NA	NA	NA
WP_047909443.1\|65883_66621_+\|transposase	IS6 family transposase	A0A1X9I6E7	Streptococcus_phage	7.7e-24	35.5
WP_047909445.1\|67535_68504_-	hypothetical protein	NA	NA	NA	NA
WP_157112549.1\|68478_68787_-	hypothetical protein	NA	NA	NA	NA
WP_047909447.1\|69592_69907_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_047909448.1\|70308_71043_-\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	1.4e-20	31.9
WP_157112550.1\|71800_72603_-\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	6.4e-24	32.7
WP_157112551.1\|72739_73366_-	hypothetical protein	NA	NA	NA	NA
WP_157112552.1\|73319_73724_-	hypothetical protein	NA	NA	NA	NA
WP_084664397.1\|73754_74489_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	1.4e-20	31.9
WP_047909453.1\|75226_75604_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_047909454.1\|75584_75920_+	XRE family transcriptional regulator	A0A0D5BHH6	Escherichia_phage	2.5e-06	34.2
WP_047909156.1\|78006_79242_-\|transposase	IS110 family transposase	A0A1X9I619	Streptococcus_phage	5.5e-06	23.0
WP_084664403.1\|79770_80400_-	hypothetical protein	NA	NA	NA	NA
WP_047909512.1\|80417_81542_-	J domain-containing protein	NA	NA	NA	NA
WP_047909456.1\|81769_83449_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
87431:88277	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP011808

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2047 : 81331

Stx2-converting_phage(22.22%)

integrase,transposase,protease

attL 14853:14904|attR 63308:63359

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047909271.1\|2047_2773_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	4.6e-37	41.7
WP_047909272.1\|2881_3280_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_047909273.1\|3276_3522_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_157112497.1\|4533_4689_+	hypothetical protein	NA	NA	NA	NA
WP_047909275.1\|4804_5044_-	hypothetical protein	NA	NA	NA	NA
WP_047909276.1\|5336_5609_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_047909277.1\|5605_6010_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_053059768.1\|6047_8294_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_047909278.1\|8401_9070_-	hypothetical protein	NA	NA	NA	NA
WP_047909279.1\|9070_9835_-	hypothetical protein	NA	NA	NA	NA
WP_167362753.1\|9843_10101_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_157112498.1\|11610_11760_+	hypothetical protein	NA	NA	NA	NA
WP_047909281.1\|13198_14092_-	hypothetical protein	NA	NA	NA	NA
14853:14904	attL	NA	NA	NA	NA
WP_047909283.1\|16667_18074_+	hypothetical protein	NA	NA	NA	NA
WP_047909286.1\|19953_21111_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	5.2e-35	34.8
WP_047909217.1\|22553_22940_+\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	1.4e-13	47.9
WP_047909218.1\|22936_23284_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	8.0e-40	72.0
WP_047909219.1\|23313_24876_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	3.4e-154	55.1
WP_047909220.1\|24915_25512_+	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	8.1e-24	32.6
WP_047909287.1\|25585_27193_+	hypothetical protein	NA	NA	NA	NA
WP_047909288.1\|28424_28655_-	hypothetical protein	NA	NA	NA	NA
WP_047909289.1\|28799_30143_-	hypothetical protein	NA	NA	NA	NA
WP_157112499.1\|31114_31267_+	hypothetical protein	NA	NA	NA	NA
WP_071386912.1\|31519_31873_+	hypothetical protein	NA	NA	NA	NA
WP_047909292.1\|32335_32578_+	hypothetical protein	NA	NA	NA	NA
WP_047909293.1\|32699_34784_+	hypothetical protein	NA	NA	NA	NA
WP_053059783.1\|35078_35564_-	VUT family protein	A0A2H4N7D9	Pectobacterium_phage	5.6e-31	51.7
WP_047909294.1\|35759_37580_-	SLC13 family permease	NA	NA	NA	NA
WP_084664277.1\|37982_38270_-	hypothetical protein	NA	NA	NA	NA
WP_047906141.1\|39367_40423_-\|transposase	IS481 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	2.4e-127	62.6
WP_047909296.1\|40663_41110_+	response regulator transcription factor	NA	NA	NA	NA
WP_157112500.1\|41681_41831_+	hypothetical protein	NA	NA	NA	NA
WP_047909300.1\|44451_45045_+	restriction endonuclease	NA	NA	NA	NA
WP_084664349.1\|46403_47354_-	ParB/RepB/Spo0J family partition protein	S5VSZ7	Leptospira_phage	4.3e-11	40.7
WP_047909302.1\|47368_48580_-	AAA family ATPase	A0A240F4U1	Ochrobactrum_phage	2.8e-31	27.6
WP_084664360.1\|49616_50969_+	replication initiation protein	NA	NA	NA	NA
WP_084664281.1\|51080_52334_-\|protease	aspartyl protease family protein	NA	NA	NA	NA
WP_047909304.1\|52785_53832_-	hypothetical protein	NA	NA	NA	NA
WP_047909306.1\|55168_57220_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_047909307.1\|58085_59996_+	hypothetical protein	NA	NA	NA	NA
WP_047909415.1\|60458_61022_-	Hsp20/alpha crystallin family protein	A0A1B2LRT2	Wolbachia_phage	2.5e-14	34.1
WP_047909308.1\|61181_61589_-	Hsp20/alpha crystallin family protein	A0A218MM84	uncultured_virus	5.0e-09	30.2
WP_047909416.1\|61617_62061_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_047909309.1\|62306_62690_+	hypothetical protein	NA	NA	NA	NA
WP_157112501.1\|63789_64743_-	hypothetical protein	NA	NA	NA	NA
63308:63359	attR	NA	NA	NA	NA
WP_157112502.1\|65604_66222_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	4.8e-35	40.3
WP_157112541.1\|66510_66810_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	4.2e-21	48.9
WP_047909313.1\|66813_67110_+	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	1.1e-13	47.6
WP_047905322.1\|70448_71468_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_047909419.1\|71791_72145_+	hypothetical protein	NA	NA	NA	NA
WP_157112503.1\|72407_74048_-	hypothetical protein	NA	NA	NA	NA
WP_047909317.1\|76668_77493_-	DUF945 domain-containing protein	A0A2C9CYF8	Yersinia_phage	1.0e-40	36.3
WP_047909318.1\|79052_79466_+	hypothetical protein	NA	NA	NA	NA
WP_157112504.1\|79438_80555_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	4.3e-42	37.4
WP_084664285.1\|80896_81331_+\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	1.2e-11	47.2

DBSCAN-SWA_2

134791 : 171490

Mycobacterium_phage(33.33%)

integrase,transposase

attL 134003:134019|attR 163511:163527

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
134003:134019	attL	NA	NA	NA	NA
WP_157112264.1\|134791_135590_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_047909350.1\|136578_136941_+	hypothetical protein	NA	NA	NA	NA
WP_047909351.1\|136962_137691_+	hypothetical protein	NA	NA	NA	NA
WP_047909427.1\|137702_138170_+	type III secretion protein	NA	NA	NA	NA
WP_047909352.1\|138166_139654_+	hypothetical protein	NA	NA	NA	NA
WP_047909353.1\|139672_140356_+	hypothetical protein	NA	NA	NA	NA
WP_157112510.1\|140367_140550_-	hypothetical protein	NA	NA	NA	NA
WP_157112511.1\|140989_142009_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_047909428.1\|142228_142609_-	hypothetical protein	NA	NA	NA	NA
WP_047909355.1\|142602_143928_-	FliI/YscN family ATPase	NA	NA	NA	NA
WP_047909356.1\|143914_145972_-	EscV/YscV/HrcV family type III secretion system export apparatus protein	NA	NA	NA	NA
WP_047909429.1\|145955_146336_-	type III secretion protein	NA	NA	NA	NA
WP_047909357.1\|146914_148204_+	hypothetical protein	NA	NA	NA	NA
WP_047909358.1\|149104_149458_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	4.1e-39	64.4
WP_047909359.1\|149579_151727_-	metallophosphoesterase	NA	NA	NA	NA
WP_047909360.1\|151740_152214_-	hypothetical protein	NA	NA	NA	NA
WP_047909361.1\|152388_153414_+\|transposase	IS5 family transposase	A0A077SK28	Escherichia_phage	2.9e-21	29.0
WP_064674953.1\|153713_154991_+	hypothetical protein	NA	NA	NA	NA
WP_084664367.1\|155230_155788_-	YitT family protein	NA	NA	NA	NA
WP_047906396.1\|156500_157583_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_053059776.1\|158285_158510_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA
WP_157112512.1\|158727_159539_-\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	1.6e-22	33.1
WP_167362757.1\|159742_162985_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_167362762.1\|163644_164340_-\|transposase	IS6 family transposase	A0A1X9I6E7	Streptococcus_phage	1.9e-24	36.0
163511:163527	attR	NA	NA	NA	NA
WP_157112513.1\|164424_164586_+	hypothetical protein	NA	NA	NA	NA
WP_157112514.1\|165675_166486_+\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	4.7e-22	32.7
WP_064674954.1\|166641_166965_-	hypothetical protein	NA	NA	NA	NA
WP_047909369.1\|167072_167816_-\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_084664311.1\|167871_167997_+\|transposase	transposase	NA	NA	NA	NA
WP_047909370.1\|168212_169202_-	hypothetical protein	NA	NA	NA	NA
WP_047909371.1\|170266_171490_+\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	1.0e-44	33.6

DBSCAN-SWA_3

178878 : 248434

Leptospira_phage(38.46%)

holin,integrase,transposase

attL 187183:187242|attR 223035:223268

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047909369.1\|178878_179622_+\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_167362758.1\|179663_180484_-\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	1.5e-20	32.7
WP_047909376.1\|181651_182023_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_047909377.1\|182019_182217_-	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA
WP_167362759.1\|182372_182549_-\|transposase	transposase	NA	NA	NA	NA
WP_047909378.1\|182550_183414_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.4e-48	40.8
WP_047909433.1\|184064_185627_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	8.3e-68	35.5
WP_047909134.1\|185658_186009_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	5.6e-17	40.4
WP_157112517.1\|185984_186212_-	hypothetical protein	NA	NA	NA	NA
WP_157112514.1\|186365_187176_+\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	4.7e-22	32.7
187183:187242	attL	NA	NA	NA	NA
WP_047906141.1\|191162_192218_-\|transposase	IS481 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	2.4e-127	62.6
WP_157112518.1\|192368_193517_-	hypothetical protein	NA	NA	NA	NA
WP_047909140.1\|193616_194321_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	5.3e-38	42.7
WP_047909143.1\|195356_196100_-\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_084664325.1\|196168_197038_+	DUF2165 family protein	NA	NA	NA	NA
WP_157112519.1\|198638_199456_-\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	8.3e-27	35.9
WP_157112520.1\|199615_199930_+	hypothetical protein	NA	NA	NA	NA
WP_047909147.1\|199880_203012_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_047909149.1\|204347_205577_-	hypothetical protein	NA	NA	NA	NA
WP_071386924.1\|206832_207186_-	hypothetical protein	NA	NA	NA	NA
WP_053059761.1\|207395_207764_-	hypothetical protein	NA	NA	NA	NA
WP_047909151.1\|208289_208616_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_047909153.1\|208975_211339_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_047909154.1\|211794_213291_+	hypothetical protein	NA	NA	NA	NA
WP_047909155.1\|213370_214948_+	hypothetical protein	NA	NA	NA	NA
WP_047909156.1\|216427_217663_-\|transposase	IS110 family transposase	A0A1X9I619	Streptococcus_phage	5.5e-06	23.0
WP_157112521.1\|217955_219321_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	7.2e-76	52.5
WP_047909159.1\|219380_219905_+\|transposase	transposase	NA	NA	NA	NA
WP_047909160.1\|219880_220234_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	3.7e-16	39.4
WP_047909161.1\|220266_221847_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	3.0e-65	33.4
WP_047909134.1\|222417_222768_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	5.6e-17	40.4
WP_047909163.1\|222743_223184_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_047909382.1\|223691_224201_-	ferritin-like domain-containing protein	NA	NA	NA	NA
223035:223268	attR	NA	NA	NA	NA
WP_047909164.1\|224264_224987_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_047909383.1\|225095_226265_-	hypothetical protein	NA	NA	NA	NA
WP_047909384.1\|227679_228306_+	hypothetical protein	NA	NA	NA	NA
WP_157112522.1\|232673_233015_+	hypothetical protein	NA	NA	NA	NA
WP_047909167.1\|233119_233410_+	hypothetical protein	NA	NA	NA	NA
WP_047909168.1\|233690_233930_+	hypothetical protein	NA	NA	NA	NA
WP_157112523.1\|235672_235891_+	hypothetical protein	NA	NA	NA	NA
WP_157112524.1\|236615_237656_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_047909171.1\|237643_238402_+	PIG-L family deacetylase	NA	NA	NA	NA
WP_047909172.1\|238398_238983_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_047909173.1\|238979_239648_+	glycosyltransferase	NA	NA	NA	NA
WP_047909174.1\|239745_240630_-	hypothetical protein	NA	NA	NA	NA
WP_047909175.1\|240972_241185_-	CsbD family protein	NA	NA	NA	NA
WP_047905322.1\|241472_242492_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_084664329.1\|243169_243478_+	DUF883 domain-containing protein	NA	NA	NA	NA
WP_047909176.1\|243573_243954_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_157112525.1\|243967_244504_+	hypothetical protein	NA	NA	NA	NA
WP_047909387.1\|244590_244944_-	hypothetical protein	NA	NA	NA	NA
WP_047905322.1\|245267_246287_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_047909178.1\|246419_247124_-	hypothetical protein	NA	NA	NA	NA
WP_047909179.1\|247414_248434_-\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

272768 : 330028

Escherichia_phage(22.73%)

integrase,transposase

attL 280938:280994|attR 331389:331445

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047909197.1\|272768_273992_+\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	1.3e-44	33.3
WP_047909198.1\|273988_274855_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.7e-49	43.1
WP_047909199.1\|274926_276465_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	4.5e-50	38.7
WP_157112543.1\|276762_277455_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	3.6e-39	42.7
WP_047909201.1\|277889_278939_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_157112526.1\|279751_280932_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	4.5e-50	40.7
280938:280994	attL	NA	NA	NA	NA
WP_157112527.1\|281990_282155_+	hypothetical protein	NA	NA	NA	NA
WP_047909205.1\|282752_284441_+	hypothetical protein	NA	NA	NA	NA
WP_053059763.1\|284638_285040_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_047909206.1\|285168_286665_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_064674960.1\|287752_289099_-	hypothetical protein	NA	NA	NA	NA
WP_157112528.1\|289604_290416_-\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	6.1e-22	33.1
WP_047909212.1\|291090_292674_-	hypothetical protein	NA	NA	NA	NA
WP_047906187.1\|292905_293940_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_047909213.1\|294312_294738_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_047909214.1\|294734_294974_-	plasmid stability protein	NA	NA	NA	NA
WP_047909397.1\|295203_295896_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.0e-38	43.1
WP_047906396.1\|297060_298143_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_157112529.1\|298295_299675_+	Eco57I restriction-modification methylase domain-containing protein	A0A2L1IV91	Escherichia_phage	2.0e-198	73.9
WP_047909216.1\|299671_300628_+	restriction endonuclease BsuBI	A0A0P0ZG22	Escherichia_phage	7.1e-155	82.9
WP_047909217.1\|300938_301325_+\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	1.4e-13	47.9
WP_047909218.1\|301321_301669_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	8.0e-40	72.0
WP_047909219.1\|301698_303261_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	3.4e-154	55.1
WP_047909220.1\|303300_303897_+	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	8.1e-24	32.6
WP_157112530.1\|304520_305337_+\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	1.1e-26	35.9
WP_064674961.1\|305379_307506_-	hypothetical protein	NA	NA	NA	NA
WP_064674970.1\|308093_308804_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	5.9e-37	42.2
WP_047909226.1\|309374_309815_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_047909134.1\|309790_310141_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	5.6e-17	40.4
WP_047909161.1\|310711_312292_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	3.0e-65	33.4
WP_047909160.1\|312324_312678_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	3.7e-16	39.4
WP_047909159.1\|312653_313178_-\|transposase	transposase	NA	NA	NA	NA
WP_157112531.1\|313236_314603_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	7.2e-76	52.5
WP_084664337.1\|314709_315162_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_157112532.1\|315261_316018_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	4.4e-22	42.3
WP_157112533.1\|316494_317844_-	hypothetical protein	NA	NA	NA	NA
WP_047909231.1\|318114_319170_+\|transposase	IS481 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.1e-119	60.2
WP_167362675.1\|319217_319382_+\|transposase	transposase	NA	NA	NA	NA
WP_047909232.1\|319506_322506_-	hypothetical protein	NA	NA	NA	NA
WP_047909400.1\|322809_323211_-	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA
WP_047909401.1\|323213_323510_-	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA
WP_047909234.1\|326433_327363_+	hypothetical protein	NA	NA	NA	NA
WP_047909156.1\|328792_330028_-\|transposase	IS110 family transposase	A0A1X9I619	Streptococcus_phage	5.5e-06	23.0
331389:331445	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP011807

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011807_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011807_1

1466411-1466505

Orphan

Consensus_repeat	Method
CATCACGCTGCTTGCCGTGCTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011807_1

>merge|NZ_CP011807|1|1466411-1466505|CRISPRCasFinder
CATCACGCTGCTTGCCGTGCTGGTGGTGCTGTGGCTGGCCGTGCGCTCCGGCAAGATGATTCTCGCGGTGTTCATCACGCTGCTTGCCGGGCTGG

>NZ_CP011807|1|1|1466411-1466505|CRISPRCasFinder
CATCACGCTGCTTGCCGTGCTGG	TGGTGCTGTGGCTGGCCGTGCGCTCCGGCAAGATGATTCTCGCGGTGTT
CATCACGCTGCTTGCCGGGCTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011807.3\|WP_047907396.1\|1461160_1462156_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|163279
NZ_CP011807.3\|WP_047907397.1\|1462156_1463278_-\|adenosyl-hopene-transferase-HpnH	unknown	unknown	gnl\|CDD\|274595
NZ_CP011807.3\|WP_047907405.1\|1475029_1476052_-\|flippase-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|274596
NZ_CP011807.3\|WP_047907403.1\|1472540_1474253_-\|phosphoenolpyruvate-mutase	unknown	unknown	gnl\|CDD\|274077
NZ_CP011807.3\|WP_047907406.1\|1478005_1478761_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180796
NZ_CP011807.3\|WP_047907402.1\|1470241_1471315_-\|2-aminoethylphosphonate-aminotransferase	unknown	unknown	gnl\|CDD\|274512
NZ_CP011807.3\|WP_047907401.1\|1468313_1470218_-\|1-deoxy-D-xylulose-5-phosphate-synthase	unknown	unknown	gnl\|CDD\|235470
NZ_CP011807.3\|WP_047908884.1\|1453861_1454716_-\|squalene-synthase-HpnC	unknown	unknown	gnl\|CDD\|274592
NZ_CP011807.3\|WP_047907393.1\|1455790_1457035_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274593
NZ_CP011807.3\|WP_047908887.1\|1471360_1472548_-\|phosphonopyruvate-decarboxylase	unknown	unknown	gnl\|CDD\|274508
NZ_CP011807.3\|WP_084663383.1\|1454942_1455791_+\|presqualene-diphosphate-synthase-HpnD	unknown	unknown	gnl\|CDD\|163278
NZ_CP011807.3\|WP_047907407.1\|1478818_1479166_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011807.3\|WP_047908886.1\|1457235_1459209_+\|squalene--hopene-cyclase	unknown	unknown	gnl\|CDD\|239222
NZ_CP011807.3\|WP_047907399.1\|1464616_1465258_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|377516
NZ_CP011807.3\|WP_047907394.1\|1459220_1459916_+\|phosphorylase	unknown	unknown	gnl\|CDD\|235926
NZ_CP011807.3\|WP_047907408.1\|1479354_1479705_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380386
NZ_CP011807.3\|WP_157112446.1\|1476052_1476922_-\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|237011
NZ_CP011807.3\|WP_047907404.1\|1474249_1475014_-\|phosphocholine-cytidylyltransferase-family-protein	unknown	unknown	gnl\|CDD\|133014
NZ_CP011807.3\|WP_047907398.1\|1463301_1464261_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|234893
NZ_CP011807.3\|WP_047907395.1\|1459961_1461164_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|213815

Protein	Function_ID	Function_description	E-value
NZ_CP011807.3\|WP_047907396.1\|1461160_1462156_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|163279	TIGR03466, HpnA, hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species.	0
NZ_CP011807.3\|WP_047907397.1\|1462156_1463278_-\|adenosyl-hopene-transferase-HpnH	gnl\|CDD\|274595	TIGR03470, HpnH, hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH and running in the same convergent direction is IspH (ZM0875, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase), an essential enzyme of IPP biosynthesis and therefore essential for the biosynthesis of hopanoids. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.	0
NZ_CP011807.3\|WP_047907405.1\|1475029_1476052_-\|flippase-like-domain-containing-protein	gnl\|CDD\|274596	TIGR03476, HpnL, putative membrane protein. This family of hydrophobic proteins is observed in two distinct contexts. It is primarily found in the presence of genes for the biosynthesis and elaboration of hopene where we assign the gene symbol HpnL. In a subset of the genomes containing HpnL a second, often plasmid-encoded, homolog is observed in a context implying the biosynthesis of 2-aminoethylphosphonate head-group containing lipids.	2.64082e-96
NZ_CP011807.3\|WP_047907403.1\|1472540_1474253_-\|phosphoenolpyruvate-mutase	gnl\|CDD\|274077	TIGR02320, Phosphoenolpyruvate_phosphomutase, phosphoenolpyruvate mutase. This family consists of examples of phosphoenolpyruvate phosphomutase, an enzyme that creates a C-P bond as the first step in the biosynthesis of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for phosphonopyruvate decarboxylase (aepY). Since the PEP phosphomutase reaction favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (AEP). A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.	1.88839e-154
NZ_CP011807.3\|WP_047907406.1\|1478005_1478761_+\|SDR-family-oxidoreductase	gnl\|CDD\|180796	PRK07023, PRK07023, SDR family oxidoreductase.	3.45968e-97
NZ_CP011807.3\|WP_047907402.1\|1470241_1471315_-\|2-aminoethylphosphonate-aminotransferase	gnl\|CDD\|274512	TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level model (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.	1.20316e-126
NZ_CP011807.3\|WP_047907401.1\|1468313_1470218_-\|1-deoxy-D-xylulose-5-phosphate-synthase	gnl\|CDD\|235470	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.	0
NZ_CP011807.3\|WP_047908884.1\|1453861_1454716_-\|squalene-synthase-HpnC	gnl\|CDD\|274592	TIGR03464, HpnC, squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.	6.90376e-127
NZ_CP011807.3\|WP_047907393.1\|1455790_1457035_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|274593	TIGR03467, HpnE, squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.	1.05935e-115
NZ_CP011807.3\|WP_047908887.1\|1471360_1472548_-\|phosphonopyruvate-decarboxylase	gnl\|CDD\|274508	TIGR03297, Ppyr-DeCO2ase, phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (AEP).	1.98272e-162
NZ_CP011807.3\|WP_084663383.1\|1454942_1455791_+\|presqualene-diphosphate-synthase-HpnD	gnl\|CDD\|163278	TIGR03465, HpnD, squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.	2.28155e-96
NZ_CP011807.3\|WP_047908886.1\|1457235_1459209_+\|squalene--hopene-cyclase	gnl\|CDD\|239222	cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.	0
NZ_CP011807.3\|WP_047907399.1\|1464616_1465258_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|377516	pfam05494, MlaC, MlaC protein. MlaC is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. This family of proteins is involved in toluene tolerance, which is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation. Many proteins are involved in these processes.	2.93748e-41
NZ_CP011807.3\|WP_047907394.1\|1459220_1459916_+\|phosphorylase	gnl\|CDD\|235926	PRK07077, PRK07077, phosphorylase.	6.37063e-61
NZ_CP011807.3\|WP_047907408.1\|1479354_1479705_-\|cupin-domain-containing-protein	gnl\|CDD\|380386	cd06981, cupin_reut_a1446, Cupriavidus pinatubonensis reut_a1446 and related proteins, cupin domain. This family includes bacterial and some eukaryotic proteins homologous to reut_a1446, a Cupriavidus pinatubonensis protein of unknown function that may be related to mannose-6-phosphate isomerase. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	1.51505e-55
NZ_CP011807.3\|WP_157112446.1\|1476052_1476922_-\|2OG-Fe(II)-oxygenase	gnl\|CDD\|237011	PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional.	0.00187042
NZ_CP011807.3\|WP_047907404.1\|1474249_1475014_-\|phosphocholine-cytidylyltransferase-family-protein	gnl\|CDD\|133014	cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP-Cho to either lipoteichoic acid or lipopolysaccharide.	1.64516e-55
NZ_CP011807.3\|WP_047907398.1\|1463301_1464261_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|234893	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed.	3.06427e-174
NZ_CP011807.3\|WP_047907395.1\|1459961_1461164_-\|glycosyltransferase	gnl\|CDD\|213815	TIGR03469, HpnB, hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.	5.01277e-180

>NZ_CP011807.3|WP_047907399.1|1464616_1465258_-|ABC-transporter-substrate-binding-protein
MNKFLMTVAAVALSGIGGASAAWAQASANPNDMVKTAVETVVKGVKADAAAKTGDVNATARVVARDFLPYADFLRTTRYAVGPKVFDAATPEQQKKVFEAFQQLLVNTFALQLSQVRGNDIKFKFEPAKLTANSSDVVVGATVSGPGDNLSVAYRLAKTDKGWKIYDINMMGENVANAWLIQLYQPQFKARIAQGGIDSLIAYLQEKNERFGK
>NZ_CP011807.3|WP_047907398.1|1463301_1464261_-|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MQVLLAQPRGFCAGVIRAIEIVERALEKYGAPVYVRHEIVHNKHVVDSLKAKGARFIAELSEAPAGAVTIFSAHGVARVVEQEAEIRGLKVLNATCPLVTKVHIQGKNYVSAGREVILIGHAGHPEVEGTMGQIDGPVHLVQTEADVEALPLAIDTPVSYVTQTTLSVDETRGIIAALQRRFTNIVGPNTKDICYATQNRQTAVRELCERVDVLLVVGATNSSNSNRLREIGSEMGLPSYLVADGSEVNPEWVRGMARIGITAGASAPERMVEDVIEALRRIDTVEVTLMDGIEETIQFRLPSELTKDEPVAARHAVAG
>NZ_CP011807.3|WP_047907397.1|1462156_1463278_-|adenosyl-hopene-transferase-HpnH
MAIPFLQQAYVGAYLMKQRFKGVKRYPLVLMLEPLFRCNLACSGCGKIDYPDPILNQRVSLQESLDAVDECGAPVVSIAGGEPLLHKEMPQIVKGIIARKKFVYLCTNALLLEKKIDDYEPSPFFVWSIHLDGDREMHDAAVSQEGVYDRAVAAIKLAKSRGFRVNINCTLFNNADPEKVARFFDSTKDLGLDGITVSPGYAYERAPDQQHFLNRSKTKQLFRDILKRGNGGKKWTFSQSSLFLDFLAGNRSYHCTPWGNPTRTVFGWQRPCYLLGEGYAKTYTELMNTTDWDKYGVGNYEKCADCMVHSGFEATAVNETISHPLRALGVAIKGVRTEGKMADDISFAKQRPAEFVFSKHVEIKLDELRRAKA
>NZ_CP011807.3|WP_047907396.1|1461160_1462156_-|NAD-dependent-epimerase/dehydratase-family-protein
MPSRVLVTGASGFVGSAVARTALARGHEVRLLVRGTSPRANLADLPVEVVEGDMRDADSMRRALTGMDALLHVAADYRLWAKDPNDIMRANIDGTRTVMEAALRAGVERVVYTSSVATLRVHDATGPVDETSPNEEATTIGVYKRSKVAAERLVERMIANDGLPAVIVNPSTPIGPRDIKPTPTGRIIVEAAQGKIPAFVDTGLNLVHVDDCAEGHLLALERGRVGERYILGGDDVLLRDMLASIAGMVGRKAPKVALPRWPLYPLAMAAQGVARFTGKEPFVTVDGLKMSRYHMFFSSEKAKRELGYAARAYPEGLRDALTWFGSAGYLS
>NZ_CP011807.3|WP_047907395.1|1459961_1461164_-|glycosyltransferase
MTVLAWIAGLSLAIWIYLLSSQGGFWRARERDDLDEDRLPAPALWPPVAVVIPARNEAESIGQVVESLCRQDYPGRLRIVVVDDQSSDGTADLARDAAARAAADGLTRRVDVLSGQPLPRGWTGKMWAVRQGVAFASDPSTNDDGVAPEYLLHTDADIAHSPENVRRLVTRATGENRVLVSLMAKLRCTAWFERTLIPAFVLFFQMLYPFSWVNDPKKKMAAAAGGCMLIHRASLEAGGGIEAIRDEIIDDCAMGRMLKKQGPIWLGLTERAVSMRPYDNLGEIRKMVSRTAYAQLQYSPVLLTSTIVSLLLTFIVPPVMTIFGSGIGQWLGLFAWIAMTISYLPMLRFYHQPSSFGPMLPLVAALYTVFTFDSALQHWRGRGGMWKGRAQARGQQSPDV
>NZ_CP011807.3|WP_047907394.1|1459220_1459916_+|phosphorylase
MSPPIIVVTGMPFEARIAKGDGVHVVCAQNHTLADALEAAIAREGARGLVSFGTAGGLIPGVKPGQWVVAHTVLDMPQQARECATSLAWADALRRAMPGALLADVAGVSAPVVSAGDKAALFRESGAAAADMESHIVARVAQAHGLPFVVARVVIDPAERSLPPAALAGMRSDGSTDILGVLRSLAGNPLQLPALLRVGQDAGRARQAMKHGRRIVSLELGDGFGARAVGI
>NZ_CP011807.3|WP_047908886.1|1457235_1459209_+|squalene--hopene-cyclase
MATQTLETGIERSIAALLDLQHDDGHWLFELEADATIPAEYVLLRHHLGEKVDAELEAKVAAYLRRIQGEHGGWPLFYNGKFDMSASVKAYFALKMIGDPVDAPHMVRAREAILSRGGAQNANVFTRILLALYGVLEWKAVPMMPVEIMLLPQWFPFHLSKVSYWARTVIVPLLVLQARRPRARNPKGIGIDELFIGSPKDVGPPRRAPHQSRFWFTFFSGVDHVLRALDPFFPKKLREKSIRRAVEFVEERLNGEDGLGAIYPAMANAVMMYDVLGYPEDHPSRAIARRSVEKLVTPADHETYVQPCLSPVWDTALSAHALLETGDKRAIELAGKGLEWLIPLQILDVRGDWISRRPNVRPGGWAFQFANPHYPDVDDTAVVAMAMDRYEKLAGKFENLKIDGADPKTHAMRYAIDRGTEWVIGMQSSNGGWGAFEPENTHLYLNSIPFSDHGALLDPPTVDVSARCLSMLAQLPQSPERKASADLALKYILDDQEADGSWYGRWGMNFVYGTWSAMCGLAAAGILPEHPAMARAAQWLISIQNADGGWGEDGESYKLEYKGYEAAPSTSSQTAWALLGLMAAGKAEHPAVRRGVDYLLNTQNDEGLWDEERYTATGFPRVFYLRYHGYRKFFPLWALARYRNLTVRNDCPVPCGM
>NZ_CP011807.3|WP_047907393.1|1455790_1457035_+|FAD-dependent-oxidoreductase
MAGTVHVIGAGLAGLAAAVRLATRGVAVVLHEAAPQAGGRCRSYFDRQLNAVIDNGNHLVLSGNSTMREFTRLIGSEHTLTGPGRAEFAFVDLESDERWTVRLSEGRLPWWIFDKRARVPGTKWSDYLSLAPLLRAGPHATMTDAMHCPPALYKRLIHPLFLAVLNADPAEGSAQMAGAVIRETLVPGGKACHPLIASEGLDVTFVTPALAYLEAKGARVMMQHRVRALHYAADDSRVEAIDFGDGPQALAADDAVVLAVPPNVAASLVPGLTTPDEYRAIVNAHYQVAPPPGCPPMIGVVNGVSDWIFAFDTRLSVTISGADHLLDESRESLAMRIWEEVAKACKIASTPMPVWQLVREKRATFAATPAQDRRRPGAKTRWRNLVLAGDWTATGLPATIEGALRSGNRAADLL
>NZ_CP011807.3|WP_084663383.1|1454942_1455791_+|presqualene-diphosphate-synthase-HpnD
MSVAEPIEISPEQSSARVASGSSFYAAMRILPPAQREGMFEIYAFCRAVDDIADDGDDTSANRMARLAVWRRDLADLYDGRAAPSLANLARVVKQFGLKHEDFLAVIEGMEMDACGPIVAPDLSTLDLYCDRVASAVGRLSVKVFGMPEQEGIDLSYHLGRALQLTNILRDIDEDAGIARVYLPRETLADAGIVNVTPEAVAAADLDRACAPLVAQAREHYARARAIMARHPRRVVVAPAVMAKAYGAILDKLIARGFAVPRERVRVPRWRLILMLLRQMIL
>NZ_CP011807.3|WP_047908884.1|1453861_1454716_-|squalene-synthase-HpnC
MTSDAKIEHYENFPVASVLLPREMRAPVGVIYNFARTADDIADEGDATNAERHAGLAAYQAELDKIAAGRPTSPDKPLFAALARVIAGHRLPVQPFSDLLSAFDQDIEKKRYATFAELRDYTRRSADPVGRIMLGLFKLDTPENIACSDDICSALQLINFWQDVEVDWRKARVYLPQDDMARFGVTDADIGAQKYDDNWRALMRHEVDFARRMMLRGAPLANRVPGRFGLELCCVVHGGLRILDMIEAADYDVFRRRPQLGKMDGIRVFLRGLGMKLGGTPPKA
>NZ_CP011807.3|WP_047907401.1|1468313_1470218_-|1-deoxy-D-xylulose-5-phosphate-synthase
MTDLLASIPSPAELRALSRAELRRVADELRACVLENVSRTGGHLSSNLGTVELTIALHYVFDTPNDRIVWDVGHQTYPHKILTGRREAMPTLRQWQGLSGFPKRDESPYDTFGTAHSSTSISAALGMALASKVKGEKRHAIAVIGDGAMTAGEAFEALNNAGVYDDLPFLVVLNDNDMSISPPVGALNQYLTRLMSGQFYSAGKESVRNLLRNAPAPMRELAHKLEEHAKAIVSPTGTMFEEFGFNYLGPIDGHDLDALIPALENIKALRGPQFLHVVTRKGRGYKLAEADPVLYHGPGKFNPSEGIRPAAPGTVSAKTYTQVFGQWLCDAAAADKRVVGITPAMREGSGLVEFEKRFPERYYDVGIAEQHAVTFAGGLATEGLRPVVAIYSTFLQRGYDQLIHDVALQNLPVLLAIDRGGLVGADGATHAGAYDMAYLRCIPNMVVMAPADENECRLMLQTALGIDGPSAVRYPRGTGPGVATEAGLSTLPVGHAQTRRQSTAPAGRRVAMLAFGSMVALAEQIADEFDASVVNMRFVKPLDEATVLDMARTHDLIVTLEEGAVMGGAGTACIEALNANGVAIPVLQLGLPDTYIDQGTPAQQLASVGLDASGITASIRRAMAERLGGKVESV
>NZ_CP011807.3|WP_047907402.1|1470241_1471315_-|2-aminoethylphosphonate-aminotransferase
MLLLNPGPVTLTERVRKSLLQPDLCHREPEFFDLQDEARARLTAVYGLDPAVWTPVLMTGSGTAAVESMTAGLVPENGRLLIVENGVYGERISQIAKQYRVDHDVIHFEWMQAPDLAQIVAKLDAAGDRPYTNVAIIHHETTTGRLNDLSGISRVCRERGIDLLVDGVSSFAAEAIDFDDSGIVAVAATANKCVHGVPGVSFVLVRRDALAKAHSRTYYLDIARLAKLQAERNTPFTPSVQAYYALVEALRELEDAGGWQKRHAHYGALAEQARAGLAALGIDSVLPPGESSVVLRAYKLPAGVDYPRLHDWLKADGFVIYAGQGGLSKELFRISTMGNLSAADIDRLLASFARLVN
>NZ_CP011807.3|WP_047908887.1|1471360_1472548_-|phosphonopyruvate-decarboxylase
MIEAGQFVEAARRHGFTWYTGVPCSFLTPFINYVLQDPTLHYLSAANEGDAVAIAAGATLGEGRGARAVTMMQNSGLGNAVSPLTSLTWTFRLPQLLIVTWRGQPGITDEPQHALMGPITPAMLDLMEVPWELFPTSPEAIGPALARAVRHMDETGRPYALVMQKGSVAPFPLQPGERPARPAQPAPVSVTKGVAPSEMPTRRDALSRVIAHTPLDSTVVLASTGFCGRELYALDDRANQLYMVGSMGCVTTLALGLALARPDLRVVALDGDGAALMRMGAFATLGAYGPSNLVHLLLDNASHDSTGAQATVSPTVSFAGIAAASGYALALEGDTLEVIEQLFDGSSASLNDGPRFACLSTRPGTPDGLPRPKVTPEAVKSRLINHIARRAQVSA
>NZ_CP011807.3|WP_047907403.1|1472540_1474253_-|phosphoenolpyruvate-mutase
MNAPDAISLPPGATRAAQLRAMLRSNQLEFLMEAHNGISARIVREAGFKGIWASGLTISAQFGVRDNNEASWTQVVDNLEFMADASDLPILLDGDTGYGNFNNMRRLVRKLEQRGIAGVCIEDKVFPKTNSFIGGERQPLADIDEFCGKIKAGKDSQADDDFSIVARVEALIAGWGMEEALRRAEAYRQAGADAILIHSKLKRADEIVQFAREWGNRCPLGIVPTKYYSTPTDVFREANISLVIWANHLLRAATSAMQSVAAEIHRNETLINVEDRVATVDEIFRLQDADEYSRAEDRYLSAANAPRSAIVLAASRGKNLESVTTDRPKVMLPVAGKPLLRWLVDGFKKQGVNDITVVGGYRADAIDTAGITLAINERHAETGELASLACVTNAFTQDTVISYGDLLFRSYIVRDLVESDADFTVVVDSTAAANAANAANASVRDFAYCSAGDDRGLFGQQVLLEKISGEAPDAGRTPNGRWIGLLGVRGDAGRAQLQRVFAALQTRPDFDRLGMPELINALAADGARIEVQYVHGHWRGVNDMDEFRRAADFAHGQTPLSAAASETHGD
>NZ_CP011807.3|WP_047907404.1|1474249_1475014_-|phosphocholine-cytidylyltransferase-family-protein
MRAIILAAGMGLRLLQPEDKQSPKCLLKFDGMSLLERHLRMLAAAGITDVVLALGFHHEQVSQELDRLNWTPRPRIYLNPEFNLGSVLTLHVTAEAMTAGGDVLVMDADVLYDQRIFNALVAGETANRLLIDRDFEVGDEPVKLCLRDGVPVELRKQVMVGLEYDTVGESVGFFRFNEATAARLADITRDYVESGRARMPHEEAVRDLLLERGAQFETADVTGFPWIEIDYPEDVKRAADEVLPQLEPLTMVSE
>NZ_CP011807.3|WP_047907405.1|1475029_1476052_-|flippase-like-domain-containing-protein
MNRTAIVSLTLGFALFVALLIWQGAGSVMSTLAVAGWGLLPIAAFHLLPLVLDAAAIQVLVSKSCTLGRATLTRWVGESVNSLLPAGQIGGPIAMVRQMKQRGMAGREAAAAITVSTTLQAVAQIVFALLGLAVFGIGASHSAGDSLWLPMLLATALVSALLYAFYVAQRRGIFGWAFRMLSKMSSKRDWSSLLDRADAVDEIVQRMYGHRRQVLASFLFSLVGWIVGTAEVWLILQFIGHPVSWVDALLLESLGQAIRGAAFFVPGSLGVQEGGYLLLAPLVGLPADAALALSLAKRTRELLLGVPGLVYLHFSERGWRRQRAAQQSVSLPTATDTAPL
>NZ_CP011807.3|WP_157112446.1|1476052_1476922_-|2OG-Fe(II)-oxygenase
MPATASPSAPAFETGHAAATAAAAPAQPGEAAEPVAPVAPVAPAAFAADAEIERALGTVDIDGATREFKSQDAFIYMETFLSASVTEQLIAAARAVTPNVNRNYLPGHKQGGSVSRHTLDELAPFVAELYRSPALMRFLERLAGEKLLPSPQDDPHAYALYYYTRPGDHIGWHYDTSYYKGRRYTLLLGVVDQSSCKLEYRLHTRNPGVPQIDGAVAYPPGALVFFDGDKLHHRITPLGDNEERISLTFEYVTDPRMGTWQRFISNMKDAIAYFGFRQVFRQFLGRTKR
>NZ_CP011807.3|WP_047907406.1|1478005_1478761_+|SDR-family-oxidoreductase
MSQTIAILTGASRGLGAALARALLAPGTRLVTLARRTDDELAALASAQGVTLDQIAVDLADTEAAAQTAERIFASLPRDAGRYLLINNAGTVSPVANSAALTEPAAIDAAFALNVTSVMLLTARFLAATQGLAAKRQIVNISSGAGRNPNAGWAVYCSTKAALDMYTRVINAEHRDHGVQAVSLAPGVVDTGMQEAIRSSSAESFPALARFQELKSSGKLSSPEDVARRILALTERDDFGRTEIDDIRNYA
>NZ_CP011807.3|WP_047907407.1|1478818_1479166_-|hypothetical-protein
MEQRKRHDGFERWAAGATARLAGRDDARWRVFRAPEQADFHGFVVWCYTQGVFLGQEFDRRTDTITHCYVRNGAWAVQFDSFGEACERAFDIHAPTLILYAPERNGSVFITSTEQ
>NZ_CP011807.3|WP_047907408.1|1479354_1479705_-|cupin-domain-containing-protein
MNKPLLPDANLFAGLPSRPDPAAAEQFDTLIARTGMRVERIVSTGQASPAGFWYDQPQHEWVLLLAGSAGLAFDDTPGRTLVMRPGDTVTIDAGRRHRVEWTAQGETTVWLAIHYD

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Crispr_ID: NZ_CP011807_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011807_2

3218027-3218121

Orphan

Consensus_repeat	Method
CGACGGCTGTGGTGCAGGCGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011807_2

>merge|NZ_CP011807|2|3218027-3218121|CRISPRCasFinder
CGACGGCTGTGGTGCAGGCGACGGCACAGGCAGTATCGACGGCTGCGGTGCAGGCGACGGCACGGGCAGTAACGATGGCTGTGGTGCAGGCGACG

>NZ_CP011807|2|2|3218027-3218121|CRISPRCasFinder
CGACGGCTGTGGTGCAGGCGACG	GCACAGGCAGTATCGACGGCTGCGGTGCAGGCGACGGCACGGGCAGTAA
CGATGGCTGTGGTGCAGGCGACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011807.3\|WP_157112328.1\|3213405_3214209_-\|MetQ/NlpA-family-lipoprotein	unknown	unknown	gnl\|CDD\|224381
NZ_CP011807.3\|WP_047908204.1\|3211037_3213047_+\|propionate-catabolism-operon-regulatory-protein-PrpR	unknown	unknown	gnl\|CDD\|226350
NZ_CP011807.3\|WP_047905176.1\|3223563_3224454_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224995
NZ_CP011807.3\|WP_047905179.1\|3228786_3231141_+\|cytochrome-P450/oxidoreductase	unknown	unknown	gnl\|CDD\|99782
NZ_CP011807.3\|WP_047905173.1\|3218391_3219348_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP011807.3\|WP_157112329.1\|3226361_3227219_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011807.3\|WP_047905172.1\|3216862_3217687_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223377
NZ_CP011807.3\|WP_157112327.1\|3213099_3213261_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011807.3\|WP_047905169.1\|3205838_3208439_-\|Fe/S-dependent-2-methylisocitrate-dehydratase-AcnD	unknown	unknown	gnl\|CDD\|131386
NZ_CP011807.3\|WP_047908209.1\|3227522_3228449_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224332
NZ_CP011807.3\|WP_047905177.1\|3224562_3226176_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173858
NZ_CP011807.3\|WP_174554727.1\|3214630_3215218_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240291
NZ_CP011807.3\|WP_174554726.1\|3209741_3210632_-\|methylisocitrate-lyase	unknown	unknown	gnl\|CDD\|183086
NZ_CP011807.3\|WP_047905168.1\|3204636_3205827_-\|2-methylaconitate-cis-trans-isomerase-PrpF	unknown	unknown	gnl\|CDD\|131387
NZ_CP011807.3\|WP_047905171.1\|3215633_3216581_-\|GlxA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
NZ_CP011807.3\|WP_047908208.1\|3219673_3221008_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP011807.3\|WP_047905170.1\|3208563_3209715_-\|2-methylcitrate-synthase	unknown	unknown	gnl\|CDD\|183463
NZ_CP011807.3\|WP_047905180.1\|3231204_3232416_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|340878
NZ_CP011807.3\|WP_047905175.1\|3221821_3223564_+\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|234861
NZ_CP011807.3\|WP_047905174.1\|3221004_3221784_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491

Protein	Function_ID	Function_description	E-value
NZ_CP011807.3\|WP_157112328.1\|3213405_3214209_-\|MetQ/NlpA-family-lipoprotein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	5.27323e-125
NZ_CP011807.3\|WP_047908204.1\|3211037_3213047_+\|propionate-catabolism-operon-regulatory-protein-PrpR	gnl\|CDD\|226350	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].	2.58651e-167
NZ_CP011807.3\|WP_047905176.1\|3223563_3224454_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	4.44557e-77
NZ_CP011807.3\|WP_047905179.1\|3228786_3231141_+\|cytochrome-P450/oxidoreductase	gnl\|CDD\|99782	cd06185, PDR_like, Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.	1.29172e-99
NZ_CP011807.3\|WP_047905173.1\|3218391_3219348_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	6.58025e-36
NZ_CP011807.3\|WP_047905172.1\|3216862_3217687_+\|SDR-family-oxidoreductase	gnl\|CDD\|223377	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only].	4.60704e-97
NZ_CP011807.3\|WP_047905169.1\|3205838_3208439_-\|Fe/S-dependent-2-methylisocitrate-dehydratase-AcnD	gnl\|CDD\|131386	TIGR02333, 2-methyl_citrate_dehydratase_Fe-S_dependent_AcnD, 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) ().	0
NZ_CP011807.3\|WP_047908209.1\|3227522_3228449_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	1.00145e-43
NZ_CP011807.3\|WP_047905177.1\|3224562_3226176_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173858	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of an ATP-binding cassette (ABC)-type dipeptide import system. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP011807.3\|WP_174554727.1\|3214630_3215218_-\|hypothetical-protein	gnl\|CDD\|240291	PTZ00146, PTZ00146, fibrillarin; Provisional.	1.06732e-07
NZ_CP011807.3\|WP_174554726.1\|3209741_3210632_-\|methylisocitrate-lyase	gnl\|CDD\|183086	PRK11320, prpB, 2-methylisocitrate lyase; Provisional.	0
NZ_CP011807.3\|WP_047905168.1\|3204636_3205827_-\|2-methylaconitate-cis-trans-isomerase-PrpF	gnl\|CDD\|131387	TIGR02334, conserved_hypothetical_protein, probable AcnD-accessory protein PrpF. The 2-methylcitrate cycle is one of at least five degradation pathways for propionate via propionyl-CoA. Degradation of propionate toward pyruvate consumes oxaloacetate and releases succinate. Oxidation of succinate back into oxaloacetate by the TCA cycle makes the 2-methylcitrate pathway a cycle. This family consists of PrpF, an incompletely characterized protein that appears to be an essential accessory protein for the Fe/S-dependent 2-methylisocitrate dehydratase AcnD (TIGR02333). This protein is related to but distinct from FldA (part of pfam04303), a putative fluorene degradation protein of Sphingomonas sp. LB126. [Energy metabolism, Fermentation].	0
NZ_CP011807.3\|WP_047905171.1\|3215633_3216581_-\|GlxA-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	2.00306e-87
NZ_CP011807.3\|WP_047908208.1\|3219673_3221008_+\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.22095e-101
NZ_CP011807.3\|WP_047905170.1\|3208563_3209715_-\|2-methylcitrate-synthase	gnl\|CDD\|183463	PRK12351, PRK12351, methylcitrate synthase; Provisional.	0
NZ_CP011807.3\|WP_047905180.1\|3231204_3232416_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.13624e-98
NZ_CP011807.3\|WP_047905175.1\|3221821_3223564_+\|dihydroxy-acid-dehydratase	gnl\|CDD\|234861	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional.	0
NZ_CP011807.3\|WP_047905174.1\|3221004_3221784_+\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.89456e-58

>NZ_CP011807.3|WP_047905172.1|3216862_3217687_+|SDR-family-oxidoreductase
MTQHPSTPLGTALITGASSGIGAVYAERLARRGHDLILVARNSARLHDAAQRIHAETGRKVDVIVADLSTRDAQAVVEARLREDATIDTLVNNAGFGAVAPLLQADIEHMTDMIEVNVTALTRLTYAAVPGFVARKRGTVINIASIAAIAPELLNDVYGGSKAFVVAFSQSLQHQLTDTGVRVQAVLPGATATEFWEVAGKSHGELPQEWLMTSADLVDAALSGLDQGEAVTIPPLQDGAQWAAYEALRRQMSQGLSNSAPGKRYGVKTAARAA
>NZ_CP011807.3|WP_047905171.1|3215633_3216581_-|GlxA-family-transcriptional-regulator
MTKRVALVVYPGFQMISLAAMSVFEIANFGRDTPLYEVLTVSVEGGLVKDSAGISVATETIGRRHYDTMLVAGATYVVPTEPDLVDALKRFAPNVRRIGSICSGAFVLADAGLLEGRRATTHWGQASALRQQHPDVVVEEDRIYVNDGSIWTSAGMTAGIDLALALVEADYGSEIARETSRLLVVHYRRTGGQSQFSTLSTLEPSSDRVRAALAYAREHLREPLSVEQLAAQVHWSARHFSREFTLQTGLTPAKAIEKLRLEAAQALLEAGEASIARVADVTGFGDEERMRRAFVRTLGKPPQALLREARERMRA
>NZ_CP011807.3|WP_174554727.1|3214630_3215218_-|hypothetical-protein
MNGFKATLVAVAATAMLCGISINASYAAGGGGGGRGGGGGIGFGGGGGLGGLGAFGGPSGPGGGVGVGGIGGIGGIGGIGGIGGIGGAGGCGCGGHGGGPGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGVGASSGGGGGGGVGVGGPGGRGIGGAAGGNGLAAFGGPGALGAGGGSGCNMNGQAGEEPCP
>NZ_CP011807.3|WP_157112328.1|3213405_3214209_-|MetQ/NlpA-family-lipoprotein
MLSRQLINAFLGATFALASLGASAQTADKPLKVGTMAGSDAQIFEVVKKVAEKRGLFIKIVEFSDYAQPNAALDAGDLDANGFQHKPFLDSQVKDRGYKITTAGLTYVSPLGFYSKKYKSLKDLPNGAQVGIQNDPSNGNRALLLLQKEGLIKLKSGLEGKNATPLDIAENPKKLKIRELEAAQLPRALPDLDAASINTNFAAQAGLVPKRDAIAIEDLKGPYANLIAVRTQDLNKPWVKQLVDAYHSDEVKQFIDTQFKGALIATW
>NZ_CP011807.3|WP_157112327.1|3213099_3213261_-|hypothetical-protein
MSMMNVSMMPVALLLGFAIGMLVDHFWVTHHDEPSGHRRLDWHEMWDRIRHQH
>NZ_CP011807.3|WP_047908204.1|3211037_3213047_+|propionate-catabolism-operon-regulatory-protein-PrpR
MRKPVIWAVGISKLGELYRDIVPDYATQAEVHIVDKGYEAVIEALERLPAGSVDGIVAGGSNGDFLRERLALPVVLVKVTGSDVMHALARARRALPASSPDSRIALVSYARPAPEFERFKSAFHIDIAQHTYVDAQNAEDLVLRLRDEGMEVIVGPGLVTQLTERAGLTGIFLYSQGSVRAAFDTALEVARLGRIEAQRRERLDTVLRHLHEGVAAVDLNGRIEAINASMAGILGVTAVDALGRPLDAIAPPLDMARTLESASAELEAIVSMAGKTWVINRIPLLDQGTLTGALVTCQDSQAFARVDRSLRSRHRPRHLVARYRLDDLIGDSAAMTQVRALARRYAQTDSTVLVHGESGTGKELLAQGIHNASRRRDYPFVAINCAAFPETLLESELFGYEDGAFSGARRGGKAGLFETAHNGTIFLDEIGEMPMPLQTRLLRVLQEREVLRLGANEPVPCDVRVIAATHRDLRAQVGAGLFREDLYYRLNILRMVLPPLRERMDDLPRLTPLFLERALARAGARMSVDALQASLLPLLATYRWPGNVRELENLLERIAVVCADVVDAREISRARLIEIAPELGTATDAAQDVSKTNAGRKIGTPTMVAPSEEVHATRGAPLTGRERRAAEELARIHATLAACGGDRNAACEALGISRSTLWRKLRTGI
>NZ_CP011807.3|WP_174554726.1|3209741_3210632_-|methylisocitrate-lyase
MTQTIRSAGAAFREAVKTEQPLQVVGAINANHALLAKAAGFKAIYLSGGGVAAGSLGLPDLGISTLDDVLTDVRRITDVCDLPLLVDVDTGFGPSAFNIARTVQSLIKFGAGAMHIEDQVGAKRCGHRPGKAIVTQQEMVDRIKAAVDARTDENFVIMARTDALAVEGLQAAIDRACACVEAGADMIFPEAMTELPMYRQFSDAVKVPVLANITEFGSTPLFTVEELRSAQVGLVLYPLSAFRAMNKAAENVYHTIRRDGTQKAVLDTMQTRAELYESIGYHAYEQKLDALFAQQK
>NZ_CP011807.3|WP_047905170.1|3208563_3209715_-|2-methylcitrate-synthase
MSETTATGFKPKKSVALSGVTAGNTALCTVGRSGNDLHYRGYDILDLAQASEFEEIAYLLVYGKLPTAAELRGYKAKLKSLRGLPAAVKDALEAVPAAAHPMDVMRTGVSVLGTVLPEKDDHNIPGARDIADRLMASLGSMLLYWYHYSQNGVRIDVETDDDSIGGHFLHLLHGEKPSDQWVRAMHTSLILYAEHEFNASTFTARVIAGTGSDIHSAITGAIGALRGPKHGGANEVAFEVQKRYNSPDEAEADIRKRVENKEVIIGFGHPVYTVSDPRNKVIKEVARELSKAQQNTAMYDIAERLESVMWDVKKMFPNLDWFSAVSYHMMGVPTAMFTPLFVIARTSGWSAHIIEQRIDNKIIRPSANYTGPEDQQFVPIDKR
>NZ_CP011807.3|WP_047905169.1|3205838_3208439_-|Fe/S-dependent-2-methylisocitrate-dehydratase-AcnD
MMNTEYRKSLPGTSLDYFDARAAVEAIAPGAYDTLPYTSRVLAENLVRRCEPAALADSLRQLIERRRDLDFPWFPARVVCHDILGQTALVDLAGLRDAIAAQGGDPALVNPVVPTQLVVDHSLAVECGGFDPDAFAKNRAIEDRRNEDRFDFINWTKKAFRNVDVIPPGNGILHQINLERMSPVIQVTQGVAYPDTLVGTDSHTPMVDALGVIAIGVGGLEAESVMLGRASWMRLPDIVGVELTGRPQSGITATDIVLALTEFLRKEKVVSAYLEFYGEGAANLTLGDRATISNMAPEFGATAAMFYIDAQTIKYLKLTGRDDALVALVETYAKQTGLWADSLTKVQYERVLTFDLSSVVRNIAGPSNPHKRVPTSELAARGISGKVESEPGRMPDGAVIIAAITSCTNTNNPRNMIAAGLFARNANRAGLVRKPWVKSSLAPGSKAVTLYLEAAGLLPELEKLGFGVVAYACTSCNGMSGALDPAIQKEVVERDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTIRFDIEKDVLGVDAQGRPVKLADLWPSDEEIDAIIASSVKPEQFRRVYEPMFAASVEQGERAEPLYAWREMSTYIRRPPYWEGALAGERTLRGMRALAVLGDNITTDHLSPSNAIMADSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPTLKNEMVVVDGQVKAGSLARIEPEGKITRMWEAIETYMARKQPLIVIAGADYGQGSSRDWAAKGVRLAGTEAIVAEGFERIHRTNLVGMGVLPLEFKPGTNRKTLGIDGSETFDVIGERTPCADLTLVIHRRNGERVDVPVTCRLDTAEEVSIYEAGGVLQRFAQDFLESSQAAA
>NZ_CP011807.3|WP_047905168.1|3204636_3205827_-|2-methylaconitate-cis-trans-isomerase-PrpF
MAHRPQIRIPATYMRGGTSKGVFFRLQDLPEAARMPGAARDALLMRVIGSPDPYGKQIDGMGGATSSTSKTVIVAKSERPEHDVDYLFGQVSIDQKFVDWSGNCGNLSAAVGPFAIGAGLVDPARVPRDGVAVVRIWQANIGKTIIAHVPMTDGAVQETGDFELDGVTFPAAEVQLEFLDPAAEEDGDGGAMFPTGHLIDDLEVPGVGTFKATLINAGIPTIFLNAEDIGYKGTELQDAINGDPKALAMFETIRAHGAIRMGLIKEVSEAATRQHTPKVAFVAKPAAYTASSGKAVEAGDVDLLVRALSMGKLHHAMMGTAAVCIGAAASIPGTLVNLAAGGGARNTVRFGHPSGTLRVGAQAQEAGGEWTVTKAIMSRSARVLMEGWVRIPGDAF
>NZ_CP011807.3|WP_047905173.1|3218391_3219348_-|LysR-family-transcriptional-regulator
MTTTDSSMERFFRSGLKLGHLRILVTLGELRQVTRVAAAFHVTQPAISKQIAEIEDALGAAVVRRVGNAVELTGIGRVLVERGREILRQIELARRDVSALTAGTAGHVRFGAVVTIPQPLVAHAVELFTRRAPNASFSFVEATLDRLLKMMDEGNLDLALGRNRVTGTLPVMRNEALHHEPFVFVVGTHHPLGAAEAAVAWADLQDVRWITPMRGSPAFTTMAEILAEQGVTLQRPAIESSSLSLNLALLRGGDFVSILPLSLARRYAQRGSMRVLPLPPLGPLGEAILYWREDTTTPAAQLFADCLRESSAELIDAN
>NZ_CP011807.3|WP_047908208.1|3219673_3221008_+|MFS-transporter
MSTSLSGGAQPHATAAAPASLDPTQRNALYRKLTWHIIPFLFLSFIVAYIDRVNVSFAKLEMLADLSLSETVYGAGAGVFFLGYFLFEVPSNLILHRVGARMWIARIMVTWSIISCLTMFTQGPMSFYMLRFLLGVAEAGFFPGIVLYLSSWFPSNKRSQIIALFMVAIPVSGAIGGPLSGWIMQHFGGMHGYSGWQWLFLIEGIASLLVGVAAFFVLQDRIETVKWLSADEKRLLAQDLAADGSTRAHHSVREVFGSAKVWMLGLLYFCIAMGNYGLVFWLPTMIRAAGVANLGNIGMLSAVPSLVSAIAMILVARHADRRNERRMHVAACCVLGAAGMLASVLLADHLWWSMAALIVAAIGINSIAPVFWGIPTAMMGGAGAAAAIALINSTGNLAGFVSPYVIGFLKDSTGQLLPGMIVLACALVGGACIVMSLKPQRSDA
>NZ_CP011807.3|WP_047905174.1|3221004_3221784_+|SDR-family-oxidoreductase
MSFPVCLVTGAATGIGAATALRFAQDGWAVAINNFDDSTRSAAEAVAAQCRETGAQTLVVDADVGDDAACRRMADAVGARWGRLDALVNSAGTTRVIAHTDLEAIDAAEFERIYRVNLIGMFQMTRAATPWLRERAAGAGSASVINVSSLASLNGTGSSIAYAASKGAVNSLTLSLARSLAPHVRVNAIAPGMVDDGLLRRVLGDDAYGRVVDGMRENAPLKRVSQPAEIAELAWFLAARAPAMTGQVLAIENGLLLNT
>NZ_CP011807.3|WP_047905175.1|3221821_3223564_+|dihydroxy-acid-dehydratase
MTDLHKHRSRTVTEGVTRTPHRAFLRATGLDDAAIDKPFVAIVDTFGENTPCSMSLNQISDNVRLGVAAGGGVPIRGSAISVSDGTSMNHSGMRFSLVSRETIADSVELFVRAHCYDALVGVAGCDKTLPGILMGMVRVNVPGVFLFGGAMLPGVAPDGSQATILTAIEAVGTAQRGDMSAETLRGIEKRCTPTAGSCPGQFTANTMAMVAEVLGLAPLGSAMVPAVYSERIAIARRAGENVMRALRNGGPLPRDLVTRKSLENACAAVAATGGSTNAMLHIPAIAHEAGIEFTLDDVSEVLARTPLIGDMQPGGRYLAVDLHHVGGVPAVLNALLAGGHIHGDTLTQTGKTLEDALRAFPGPDGRVVKPHTEPLSPNAGLVVLRGNLAPDGAALKTAGLKQLTFTGTARVFETEEDCMAVVSAQTYREGDVLVIRNEGPKGGPGMREMLSVTAAIYGQGMGEKVALLTDGRFSGATRGMCIGYVGPEAAAGGPIRLIRDGDTIHIDAIKGKLDVELSDEELAARAAQVKPFVRGRLGGVLEKYEALVRPAKLGAVTHSGAVQWPYEASIGETPIHEDPN
>NZ_CP011807.3|WP_047905176.1|3223563_3224454_+|NAD(P)-dependent-oxidoreductase
MTTPRVGLCGIGRMGEPMTQRLLAAGHGVAVWNRSAAKLGALTEAGAIACVTPQALGECVDIALLCLGDGKAVEAVVFGEHGLVHAATPPRYLVDHSTLSPALTRHLAKRWHEATGSIWIDAPVSGGTGGAEAGTLAIMAGGPAQAIEAVTPVLRAFSSRVTRMGDTGAGQTTKLANQAIVATTLAGLAEAFVLAKRSGIDTAAVPAALQGGWADSVLMQTLWPRMVTPPDFATGTVRVILKDLDAIAELAHTSATVQRVLPEVRRLLKDAVERGMADWDLSQVFRIGEAESAPDA
>NZ_CP011807.3|WP_047905177.1|3224562_3226176_-|ABC-transporter-substrate-binding-protein
MRRRPLASRHTLAAVLTALALPLIPLAAQAKPLTVCTEASPEGFDVVRYNSLTTTNASADPVFNRLVEFDAAQAKVVPSLATRWEVSPDGLTYTFTLRPNVSFHSNDLFKPTRAFNADDVVFTFERMLNDNAPWHKLTPSGFPHAQSLSLGKLIKSVQKVDDNTVRFTLSAPDAVFLSMLSMGFASIYSAEYADKLVAANKTDELNARPIGTGPFVFRSYQKDNVVRFDANKSYFGGAPASERLIYTIVPDAAVRAQKVKVGECQIALSPKPLDVQAARSDQALKVVETPAFMTAFVAINTQHKPLNDVRVRQALNLAFDKPSYVKQVFEGAATPAVNVYPPNTWSYAKNVADYPHNVEKAKKLLADAGFPQGFETTIWTRPAGSLLNPNPRVGAEMLQSDLAKIGVKAQIKTVEWGELIRRGKAGEHDLLFMGWSGDNGDPDNFLTPQFGCAAVTSGTNFARFCDANLDKLIGDGKRTHDVATRTAKYQAAQKAIKDDALWIPLAHPVASVITRADVSGYRVSPFGRQDFSAVKVK
>NZ_CP011807.3|WP_157112329.1|3226361_3227219_-|hypothetical-protein
MLKRTVDPTPHVASIPTPSMTYVPLGQFGQGGRRLTGSAQNRALASSDIEAVEQVGDGARTALTPSAQCGSDELWLWRFLLAGRPFGATGAAAGGPDDGATWLSAAEHALARRLPRTQMRHRFLSERIALRWIFGRWFRCTPAQAPVPVATPGVSSLACDGPHGKVWIDMAHAGLWLFVAMGQGPVALAAHAPTPVGADESATGALDPFAVARDTAHRLCLARLAGEGEALASGADIPLLAHPYVSVPYAGRTRYLYDMSVSSRLTVVAARDSIVHRMRAFGWQN
>NZ_CP011807.3|WP_047908209.1|3227522_3228449_-|helix-turn-helix-domain-containing-protein
MTTSKRSTAGRPRSGAALSRQSGGFNEVAGQEAADAVDGNDAPRERGRRQRVQSAETGMVVLKGLARLGGRASLTLLALHVQQSPAKVHRYLMSLVEEGLVAQDADSQHYYLGLEAMLIGVAAMRQADPVRAAEPALVRLREAFDVTCFIAVMGNKGPTIVRFEEPGLPVTINVRIGSVMSVLWSAAGRVFLGLLDDPQVQAMAESEWAHASAEHRAQLDPADPIGTLRASVRAAQGACVRDTNLTGISAIAAPVFNYDGRLVGVITALGATGGFDARMDSPIGEAVRREAMAASHALGYRPPLPASA
>NZ_CP011807.3|WP_047905179.1|3228786_3231141_+|cytochrome-P450/oxidoreductase
MSQSISPTPNSAAAGGCPFHQPSAAQAPNGCPVSARAADFDPFEDGYQQDPPEYVRWAREQEPVFFSPKLGYWVVTRYDDIKAIFRDNITFSPSIALEKITPTGPEANAVLASYGFALNRTLVNEDEPAHMPRRRVLMEPFTPEHLKHHEPLVRQLAREYVDRFVNDGRADLVDQMLWEVPLTVALHFLGVPEEDMDKLREYSIAHTVNTWGRPKPEEQVAVAHAVGNFWQLAGKILDKMRQNPDGPGWMQYGIRKQKEFPEVVTDSYLHSMMMAGIVAAHETTANATANAMKLLLSHPDVWREICEDPSLIPNAVEECLRHNGSVAAWRRLATKDVTIGGIEIPAGSKLLIVTSSANHDEGHFADADLFDIRRENASDQLTFGYGSHQCMGKNLARMEMQIFLEEFTRRLPHMKLAEQKFTYVPNTSFRGPEHLFVEWDPAQNPERLDPSVLTRHTPVRIGEPSGHSVTRPVVVESVTPVAEGIVKLRLVAPDGRAMPRWAPGSHIDIECGETGLSRQYSLCGDPADAGALEIAVLHEPQGRGGSNWVHTQVRVGDRLRIRGPRNHFRLDETTPRAIFVAGGIGITPIAAMARRAKALGIDYEIHYSGRSRRTMALIDDLQALHGDRLHLWVKDEGRRADYANLLATPQHGTQVYACGPVRMLDALAQCSAHWPEDTLRVEHFQSQLGTLDPEKEHAFEVTLKDSGITVTVPADQTLLSALRAANIDVQSDCEEGLCGSCEVQVLEGEVDHRDVVLTRAERDSNTKMMSCCSRACGKKLVLAL
>NZ_CP011807.3|WP_047905180.1|3231204_3232416_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MTTTSELSPSLPSERVLLGILGLFMMIAPASTDMYLPGLPTMRQELGASAAATQLTLSYFFLGFAFGQLFWGPLADRFGRRKPMAAGIALYIFGSIGCAFADSIDHMMMWRFVQALGGCAMPVIAQAIVRDVYGPRNSARAFSIMLLVMSVAPIVAPLVGGQMLRFTTWRVIFGILAVFGVVALMALWRLPETGTTNGRQAGGPRAILTSYWQLLRDPHFVGYMIAGGAVFGASFTYITGTPLVYMEYFHVSPQFFGVLFGINIVGMAAMTIFNSRRVGQIGPYRLMRIGIVGCAVVTTVLCATVWLGFAVLPLMVAMLFLFMSLRGIITANSVAGALANHPTRAGAAAALVGSVQYGFGFAAGGLLGVLNDGSPRPLVSVMCGFAVLALLALTTMLRAPRAH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

949389 : 1018650

uncultured_Mediterranean_phage(12.5%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047907080.1\|949389_950520_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	2.2e-86	45.4
WP_047907081.1\|950657_951740_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_047907082.1\|951818_954152_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA
WP_047907083.1\|954317_955262_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	2.6e-08	23.1
WP_047907084.1\|955691_957140_+	catalase	A0A2K9L0T1	Tupanvirus	3.3e-103	48.5
WP_084663314.1\|957168_957846_-	thiamine phosphate synthase	NA	NA	NA	NA
WP_047907085.1\|958100_958598_+	DNA starvation/stationary phase protection protein	A0A2H4N7L5	Lake_Baikal_phage	5.6e-18	34.8
WP_047907086.1\|958694_959483_+	YdcF family protein	NA	NA	NA	NA
WP_047907087.1\|959623_960031_+	heme-binding protein	NA	NA	NA	NA
WP_047908786.1\|960481_960724_-	hemin uptake protein HemP	NA	NA	NA	NA
WP_047907088.1\|960965_961436_-	DUF1857 family protein	NA	NA	NA	NA
WP_047907089.1\|961518_961929_-	OsmC family protein	NA	NA	NA	NA
WP_047907090.1\|962125_963022_-	pirin family protein	NA	NA	NA	NA
WP_039396348.1\|963271_963694_-	biopolymer transporter ExbD	NA	NA	NA	NA
WP_044454348.1\|963721_964459_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_053059556.1\|964490_965210_-	energy transducer TonB	NA	NA	NA	NA
WP_047907091.1\|965609_965870_-	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_084663316.1\|965913_966825_-	glutamate racemase	NA	NA	NA	NA
WP_047907092.1\|966955_967435_-	bacterioferritin	NA	NA	NA	NA
WP_047907093.1\|967718_969242_-	fumarate hydratase	NA	NA	NA	NA
WP_084663318.1\|969287_969881_-	TIGR00645 family protein	K4K6D8	Caulobacter_phage	3.2e-20	31.8
WP_047907095.1\|970039_970933_-	DMT family transporter	NA	NA	NA	NA
WP_047907096.1\|971275_973258_+	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	1.3e-81	42.6
WP_157112228.1\|973440_973617_-	hypothetical protein	NA	NA	NA	NA
WP_167362672.1\|973739_974114_+	DUF4212 domain-containing protein	NA	NA	NA	NA
WP_047907098.1\|974110_976129_+	cation acetate symporter	NA	NA	NA	NA
WP_047907100.1\|977486_978623_+	porin	NA	NA	NA	NA
WP_157112220.1\|980363_981162_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_084663320.1\|981278_982307_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_047907101.1\|982359_983955_-	EAL domain-containing protein	NA	NA	NA	NA
WP_157112229.1\|984305_985463_+	hypothetical protein	NA	NA	NA	NA
WP_047907103.1\|985522_987238_+	penicillin-binding protein 2	NA	NA	NA	NA
WP_167362673.1\|987307_987721_+	response regulator transcription factor	NA	NA	NA	NA
WP_047907105.1\|987756_988404_+	response regulator transcription factor	NA	NA	NA	NA
WP_071386833.1\|988447_991768_+	response regulator	Q8QKV7	Ectocarpus_siliculosus_virus	1.0e-30	37.9
WP_047907107.1\|991815_992076_-\|transposase	transposase	NA	NA	NA	NA
WP_071386834.1\|992457_993012_+	hypothetical protein	NA	NA	NA	NA
WP_047907109.1\|993136_993928_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_047907110.1\|993904_995167_-	virulence factor family protein	NA	NA	NA	NA
WP_167362674.1\|995163_996990_-	DUF2156 domain-containing protein	NA	NA	NA	NA
WP_053059561.1\|997600_998641_+	helix-turn-helix transcriptional regulator	A0A291LAM3	Bordetella_phage	1.6e-06	35.1
WP_053059739.1\|998801_999371_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_047907113.1\|999448_1000258_+	A24 family peptidase	NA	NA	NA	NA
WP_047907114.1\|1000325_1000883_+	hypothetical protein	NA	NA	NA	NA
WP_084664071.1\|1001173_1001518_+	toxin co-regulated pilus biosynthesis Q family protein	NA	NA	NA	NA
WP_053059563.1\|1001510_1003169_+	PilN family type IVB pilus formation outer membrane protein	NA	NA	NA	NA
WP_047907115.1\|1003179_1004472_+	type 4b pilus protein PilO2	NA	NA	NA	NA
WP_047907116.1\|1004455_1004980_+	type IV pilus biogenesis protein PilP	NA	NA	NA	NA
WP_053059564.1\|1004976_1006518_+	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA
WP_047907117.1\|1006528_1007617_+	type II secretion system F family protein	NA	NA	NA	NA
WP_084663326.1\|1007637_1008732_+	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA
WP_047908796.1\|1008944_1009325_+	hypothetical protein	NA	NA	NA	NA
WP_157112231.1\|1009357_1009741_+	hypothetical protein	NA	NA	NA	NA
WP_064674770.1\|1009933_1010659_+	DUF2968 domain-containing protein	NA	NA	NA	NA
WP_157112232.1\|1010972_1012075_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_047905280.1\|1012164_1012431_-\|transposase	transposase	NA	NA	NA	NA
WP_084663328.1\|1012797_1015554_+	autotransporter domain-containing protein	NA	NA	NA	NA
WP_157112220.1\|1016483_1017281_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_071386838.1\|1017357_1018452_+	hypothetical protein	NA	NA	NA	NA
WP_167362675.1\|1018485_1018650_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1717132 : 1722949

Staphylococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047907551.1\|1717132_1717933_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.6e-14	24.2
WP_047907552.1\|1717929_1718643_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.2e-11	24.2
WP_084663438.1\|1719019_1720471_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	5.6e-18	34.9
WP_047907553.1\|1720500_1720989_-	dihydrofolate reductase	A0A0A8JB64	Ralstonia_phage	2.0e-28	47.5
WP_047907554.1\|1720985_1721780_-	thymidylate synthase	A6M9A2	Geobacillus_virus	4.4e-110	68.6
WP_047907555.1\|1721839_1722949_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.0e-25	35.9

DBSCAN-SWA_3

3256399 : 3303126

Burkholderia_virus(21.43%)

plate,head,integrase,terminase,capsid,tRNA,tail,portal

attL 3291450:3291465|attR 3312521:3312536

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047905199.1\|3256399_3257512_-\|plate	baseplate J/gp47 family protein	A0A2P9JZK6	Alteromonadaceae_phage	6.8e-40	32.1
WP_047905200.1\|3257511_3257955_-	phage GP46 family protein	A0A0C4UR04	Shigella_phage	9.3e-25	41.7
WP_053059376.1\|3258012_3258642_-\|plate	phage baseplate assembly protein	NA	NA	NA	NA
WP_047905202.1\|3258638_3259730_-	Mu P family protein	M1PVV2	Vibrio_phage	4.0e-37	30.6
WP_047905203.1\|3259746_3260253_+	hypothetical protein	NA	NA	NA	NA
WP_047905204.1\|3260424_3260916_-	hypothetical protein	NA	NA	NA	NA
WP_157112469.1\|3260985_3262371_-	DNA circularization N-terminal domain-containing protein	A0A2P9JZK2	Alteromonadaceae_phage	2.3e-05	31.5
WP_053059377.1\|3262457_3264449_-	transglycosylase SLT domain-containing protein	A0A0M4REK7	Salmonella_phage	1.4e-24	45.5
WP_084664167.1\|3264448_3264571_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_047905207.1\|3264570_3264861_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_010804693.1\|3264863_3265238_-\|tail	phage tail tube protein	NA	NA	NA	NA
WP_047905208.1\|3265292_3266786_-\|tail	phage tail sheath subtilisin-like domain-containing protein	B5TK67	Pseudomonas_phage	5.3e-96	42.2
WP_047905209.1\|3266848_3267037_-	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_047905210.1\|3267046_3267610_-	hypothetical protein	NA	NA	NA	NA
WP_047905211.1\|3267606_3267939_-	hypothetical protein	NA	NA	NA	NA
WP_047905212.1\|3268159_3269221_-\|capsid	major capsid protein	V5Q8G6	Xylella_phage	1.8e-53	34.4
WP_047905213.1\|3269303_3269717_-\|head	head decoration protein	NA	NA	NA	NA
WP_047905214.1\|3269744_3270374_-	hypothetical protein	NA	NA	NA	NA
WP_047905215.1\|3270398_3271286_-	S49 family peptidase	A0A1I9KF73	Aeromonas_phage	5.8e-50	39.8
WP_047908214.1\|3271282_3272857_-\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	4.7e-87	35.3
WP_084664169.1\|3272919_3273150_-\|head,tail	phage head-tail adapter protein	NA	NA	NA	NA
WP_047905217.1\|3273196_3275203_-\|terminase	phage terminase large subunit family protein	G8EXZ6	Synechococcus_phage	2.2e-145	46.8
WP_047905218.1\|3275180_3275768_-	hypothetical protein	NA	NA	NA	NA
WP_071386881.1\|3275901_3276435_-\|tail	phage tail protein	A0A067ZG41	Vibrio_phage	7.1e-11	31.5
WP_157112331.1\|3276803_3277277_-	hypothetical protein	NA	NA	NA	NA
WP_053059379.1\|3277344_3277770_-	DUF1364 family protein	Q6JIF7	Burkholderia_virus	6.8e-33	49.6
WP_047905221.1\|3277766_3278084_-	hypothetical protein	NA	NA	NA	NA
WP_047908217.1\|3278080_3278419_-	DUF1064 domain-containing protein	B0VK09	Azospirillum_phage	9.6e-14	43.0
WP_047905222.1\|3278738_3279398_-	hypothetical protein	Q3HQZ7	Burkholderia_phage	2.5e-74	64.8
WP_053059380.1\|3279394_3280297_-	hypothetical protein	Q6JIG0	Burkholderia_virus	5.3e-35	39.2
WP_047905224.1\|3280781_3281045_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_064674836.1\|3281162_3281354_-	hypothetical protein	NA	NA	NA	NA
WP_047905225.1\|3281366_3281675_-	hypothetical protein	E5E3P2	Burkholderia_phage	1.9e-16	51.8
WP_047905226.1\|3281831_3282074_+	hypothetical protein	NA	NA	NA	NA
WP_047905227.1\|3282245_3282773_+	hypothetical protein	NA	NA	NA	NA
WP_047905228.1\|3282889_3283273_+	hypothetical protein	NA	NA	NA	NA
WP_084663705.1\|3283287_3283611_-	helix-turn-helix domain-containing protein	Q6JIG9	Burkholderia_virus	8.0e-18	58.9
WP_047905229.1\|3283693_3284074_+	transcriptional regulator	Q6JIH0	Burkholderia_virus	7.5e-23	50.0
WP_157112332.1\|3284070_3284799_+	hypothetical protein	NA	NA	NA	NA
WP_167362702.1\|3284795_3285605_+	DUF3037 domain-containing protein	NA	NA	NA	NA
WP_084663707.1\|3286061_3286298_+	transcriptional regulator	NA	NA	NA	NA
WP_157112333.1\|3287281_3287428_+	hypothetical protein	NA	NA	NA	NA
WP_047905233.1\|3287424_3287649_+	hypothetical protein	NA	NA	NA	NA
WP_047905234.1\|3287682_3288603_+	recombination-associated protein RdgC	A0A218M310	Acidovorax_phage	3.9e-57	41.2
WP_064674838.1\|3288617_3289136_+	hypothetical protein	I6NP82	Burkholderia_phage	5.5e-53	55.2
WP_071386883.1\|3289163_3289805_+	hypothetical protein	R9VX45	Serratia_phage	3.1e-05	28.0
WP_157112334.1\|3289889_3290990_+	hypothetical protein	NA	NA	NA	NA
WP_047905237.1\|3290986_3291211_+	hypothetical protein	NA	NA	NA	NA
WP_047905238.1\|3291207_3291618_+	HNH endonuclease	A0A0U4IIE4	Pseudomonas_phage	6.0e-26	75.7
3291450:3291465	attL	NA	NA	NA	NA
WP_047905239.1\|3291620_3291938_-	hypothetical protein	NA	NA	NA	NA
WP_047905240.1\|3291970_3292159_+	hypothetical protein	NA	NA	NA	NA
WP_047905241.1\|3292173_3292524_+	hypothetical protein	NA	NA	NA	NA
WP_047905242.1\|3292520_3293627_+	DNA cytosine methyltransferase	Q6J1P4	Burkholderia_virus	4.9e-107	55.6
WP_047905243.1\|3294007_3295081_+\|integrase	site-specific integrase	A4JWQ7	Burkholderia_virus	5.3e-58	38.2
WP_084664171.1\|3295209_3297594_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	2.4e-34	31.2
WP_157112335.1\|3297607_3297898_+	hypothetical protein	NA	NA	NA	NA
WP_047905245.1\|3297912_3299796_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.2e-66	39.8
WP_047905246.1\|3299865_3300312_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	1.5e-22	47.9
WP_047908221.1\|3300752_3302003_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_047905247.1\|3302094_3303126_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.6e-91	53.2
3312521:3312536	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3322428 : 3353843

Bacillus_phage(22.22%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_053059383.1\|3322428_3323895_-\|transposase	IS1182 family transposase	A0A1X9I5T2	Streptococcus_phage	2.5e-82	38.7
WP_047905264.1\|3324038_3326357_-	UvrD-helicase domain-containing protein	S5M596	Bacillus_phage	4.2e-76	31.1
WP_047905265.1\|3326467_3329329_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	6.2e-146	40.3
WP_047905266.1\|3329359_3330247_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	7.7e-71	47.7
WP_047905267.1\|3330449_3330677_-	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_047905268.1\|3330778_3331309_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_047905269.1\|3331573_3332854_+	chloride channel protein	NA	NA	NA	NA
WP_084663711.1\|3332917_3334054_-	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_047905271.1\|3334145_3334334_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA
WP_047905272.1\|3334453_3335224_-	class II aldolase/adducin family protein	NA	NA	NA	NA
WP_047905273.1\|3335291_3336563_-	YbfB/YjiJ family MFS transporter	NA	NA	NA	NA
WP_047905274.1\|3337019_3339644_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	8.4e-81	39.8
WP_047905275.1\|3339889_3341113_+	CoA transferase	NA	NA	NA	NA
WP_084663713.1\|3341273_3342587_-	divalent metal cation transporter	NA	NA	NA	NA
WP_047905276.1\|3342703_3343330_+	hypothetical protein	NA	NA	NA	NA
WP_053059384.1\|3343558_3344269_-	hypothetical protein	NA	NA	NA	NA
WP_047905277.1\|3344268_3344634_-	BON domain-containing protein	NA	NA	NA	NA
WP_084663715.1\|3344648_3344801_-	alpha helical protein	NA	NA	NA	NA
WP_047905278.1\|3344814_3345252_-	CBS domain-containing protein	A0A2I6B2H4	Macacine_betaherpesvirus	5.2e-12	34.7
WP_157112340.1\|3345581_3346316_-	hypothetical protein	NA	NA	NA	NA
WP_167362748.1\|3347006_3347567_+\|transposase	transposase	A0A1B0Z042	Pseudomonas_phage	3.0e-36	72.3
WP_157112341.1\|3347612_3348729_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_167362703.1\|3348691_3349237_-\|transposase	transposase	S5WIU1	Leptospira_phage	1.7e-28	44.3
WP_047905282.1\|3350207_3350684_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_047905283.1\|3350664_3351015_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_047905284.1\|3351083_3352691_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	9.4e-59	33.3
WP_167362705.1\|3353744_3353843_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_5

3393684 : 3468182

Ralstonia_phage(61.76%)

head,integrase,terminase,capsid,protease,transposase,tail

attL 3406835:3406850|attR 3441511:3441526

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047905311.1\|3393684_3395559_-\|protease	ATP-dependent zinc metalloprotease FtsH	C7U047	Ostreococcus_tauri_virus	4.6e-113	42.4
WP_047905312.1\|3395678_3396329_-	RlmE family RNA methyltransferase	NA	NA	NA	NA
WP_047905313.1\|3396482_3396983_+	ribosome assembly RNA-binding protein YhbY	NA	NA	NA	NA
WP_047905314.1\|3397177_3397693_-	DUF4149 domain-containing protein	NA	NA	NA	NA
WP_047905315.1\|3397676_3398153_-	transcription elongation factor GreA	NA	NA	NA	NA
WP_047905316.1\|3398462_3401705_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_047905317.1\|3401723_3402404_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_047905318.1\|3402450_3403596_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	1.7e-49	34.1
WP_047905319.1\|3403790_3404552_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_047905320.1\|3404711_3406331_-	alpha,alpha-trehalase TreF	NA	NA	NA	NA
WP_047905321.1\|3406327_3407095_-	glucose 1-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	1.2e-22	32.7
3406835:3406850	attL	NA	NA	NA	NA
WP_047905322.1\|3407382_3408402_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_047905323.1\|3408996_3410322_+	C4-dicarboxylate transporter DctA	NA	NA	NA	NA
WP_047905324.1\|3410451_3411474_+	allantoicase	NA	NA	NA	NA
WP_047905325.1\|3411545_3412079_+	ureidoglycolate lyase	NA	NA	NA	NA
WP_047908235.1\|3412215_3412626_-	RidA family protein	NA	NA	NA	NA
WP_047905326.1\|3412628_3413099_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_047905327.1\|3413216_3414860_-	AMP-binding protein	A0A1V0SBX8	Catovirus	2.3e-07	18.2
WP_047905328.1\|3415060_3416257_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_047905329.1\|3416259_3417123_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA
WP_047905330.1\|3417294_3418119_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_047905331.1\|3418128_3420471_-	bifunctional salicylyl-CoA 5-hydroxylase/oxidoreductase	NA	NA	NA	NA
WP_084663725.1\|3420710_3422066_-	MFS transporter	Q6JIH2	Burkholderia_virus	7.6e-86	41.5
WP_047908237.1\|3422062_3423460_-	M20 family metallopeptidase	NA	NA	NA	NA
WP_047905332.1\|3423694_3424612_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_064674842.1\|3424648_3426064_-	multidrug transporter subunit MdtD	A0A0M3UL24	Mycobacterium_phage	2.6e-20	28.1
WP_047908239.1\|3426106_3428008_-	propionate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	3.2e-66	34.7
WP_047905333.1\|3428343_3430038_-	transglycosylase SLT domain-containing protein	I1VXB7	Halocynthia_phage	2.2e-05	37.1
WP_047905334.1\|3430575_3431403_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_047905335.1\|3431417_3432281_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_047905336.1\|3432292_3432739_+	ribonuclease HI	J9Q745	Salmonella_phage	1.3e-37	49.6
WP_047905337.1\|3432872_3433613_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	6.7e-36	45.1
WP_064674843.1\|3434025_3435045_+\|integrase	site-specific integrase	A0A1L7DQ84	Ralstonia_phage	8.0e-96	55.9
WP_053059389.1\|3435162_3435498_-	hypothetical protein	A0A0A1I670	Burkholderia_phage	1.3e-07	40.7
WP_157112470.1\|3435494_3435974_-	glycoside hydrolase family protein	A0A068Q6I2	Ralstonia_phage	3.3e-44	59.5
WP_047905340.1\|3435970_3436186_-	hypothetical protein	NA	NA	NA	NA
WP_053059390.1\|3436187_3437981_-\|terminase	phage terminase large subunit	A0A1L7DQE6	Ralstonia_phage	6.0e-280	78.9
WP_053059391.1\|3437980_3438268_-	hypothetical protein	A0A1L7DQF8	Ralstonia_phage	9.9e-20	57.7
WP_047905341.1\|3438264_3438462_-	hypothetical protein	NA	NA	NA	NA
WP_053059392.1\|3438501_3440145_-	hypothetical protein	B5BTX4	Ralstonia_phage	2.3e-44	63.5
WP_047905342.1\|3440221_3445180_-	transglycosylase SLT domain-containing protein	A0A1L7DQA5	Ralstonia_phage	1.8e-273	37.7
3441511:3441526	attR	NA	NA	NA	NA
WP_047905343.1\|3445250_3447581_-	hypothetical protein	A0A1L7DQB4	Ralstonia_phage	3.6e-208	50.3
WP_047905344.1\|3447598_3448447_-	hypothetical protein	A0A1L7DQA8	Ralstonia_phage	7.0e-45	49.1
WP_047905345.1\|3448456_3451018_-	hypothetical protein	A0A1L7DQL7	Ralstonia_phage	9.1e-306	61.2
WP_047905346.1\|3451017_3451629_-	hypothetical protein	A0A0A1I5V9	Burkholderia_phage	3.6e-59	56.9
WP_047905347.1\|3451702_3452719_-\|capsid	capsid protein	A0A1L7DQF3	Ralstonia_phage	1.0e-130	69.8
WP_053059393.1\|3452850_3453627_-	hypothetical protein	A0A1S6L1B7	Ralstonia_phage	1.4e-52	53.9
WP_047905348.1\|3453630_3455190_-\|head,tail	head-tail joining protein	A0A1L7DQD6	Ralstonia_phage	1.8e-195	67.3
WP_157112347.1\|3455189_3455525_-	hypothetical protein	NA	NA	NA	NA
WP_047905350.1\|3455602_3456034_-	hypothetical protein	A0A1L7DQB1	Ralstonia_phage	3.6e-21	36.8
WP_167362707.1\|3456017_3456188_-	hypothetical protein	A0A0A1I675	Burkholderia_phage	3.4e-12	64.8
WP_047905353.1\|3458744_3459437_-	adenylyl-sulfate kinase	A0A1S6L1B9	Ralstonia_phage	5.3e-51	53.4
WP_047905354.1\|3459499_3460279_-	ribonuclease H-like domain-containing protein	A0A1S6L1C7	Ralstonia_phage	3.7e-141	89.6
WP_047905355.1\|3460297_3460534_-	hypothetical protein	NA	NA	NA	NA
WP_084663727.1\|3460526_3460895_-	hypothetical protein	A0A1L7DQG2	Ralstonia_phage	1.6e-38	69.4
WP_174554728.1\|3460845_3461823_-	hypothetical protein	A0A1L7DQH5	Ralstonia_phage	6.1e-101	61.4
WP_064674844.1\|3461823_3462708_-	hypothetical protein	A0A1L7DQE1	Ralstonia_phage	3.1e-88	62.6
WP_053059706.1\|3462773_3465173_-	DNA polymerase A family protein	A0A1L7DQB7	Ralstonia_phage	0.0e+00	71.1
WP_047905357.1\|3465190_3465445_-	hypothetical protein	NA	NA	NA	NA
WP_047905358.1\|3465441_3465864_-	hypothetical protein	NA	NA	NA	NA
WP_157112349.1\|3465865_3466093_-	hypothetical protein	NA	NA	NA	NA
WP_053059394.1\|3466098_3467304_-	AAA family ATPase	A0A1L7DQC0	Ralstonia_phage	5.1e-142	61.2
WP_047905360.1\|3467357_3468182_-	hypothetical protein	A0A1L7DQD5	Ralstonia_phage	3.9e-101	63.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011809

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP011808

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP011807

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection