CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011930	Herbaspirillum seropedicae strain Z67 chromosome, complete genome	2 crisprs	WYL,cas3,DinG,DEDDh,csa3,RT	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011930_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011930_1

2127511-2127675

Orphan

Consensus_repeat	Method
GTCCTTCTTCAGGCAGGACGACATGAAGGCCTTGCGTTCGTCGCCTTTCTTGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011930_1

>merge|NZ_CP011930|1|2127511-2127675|CRISPRCasFinder
GTCCTTCTTCAGGCAGGACGACATGAAGGCCTTGCGTTCGTCGCCTTTCTTGCCCGCGGCGTCAGCATTGCACTGCTTCATCTTGTCCTGCTGGGTGGCTGGCTTGGGCGCGTCCTTCTTCAGGCAGGACGACATGAAGGCCTTGCGTTCGTCCCCTTTCTTGCC

>NZ_CP011930|1|1|2127511-2127675|CRISPRCasFinder
GTCCTTCTTCAGGCAGGACGACATGAAGGCCTTGCGTTCGTCGCCTTTCTTGCC	CGCGGCGTCAGCATTGCACTGCTTCATCTTGTCCTGCTGGGTGGCTGGCTTGGGCGC
GTCCTTCTTCAGGCAGGACGACATGAAGGCCTTGCGTTCGTCCCCTTTCTTGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011930.1\|WP_013233869.1\|2117194_2117764_-\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|238901
NZ_CP011930.1\|WP_013233884.1\|2133753_2135040_-\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|238452
NZ_CP011930.1\|WP_013233880.1\|2127888_2128287_-\|DUF1311-domain-containing-protein	unknown	unknown	gnl\|CDD\|226278
NZ_CP011930.1\|WP_041310524.1\|2135676_2136792_-\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|234672
NZ_CP011930.1\|WP_013233888.1\|2141079_2142147_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|182909
NZ_CP011930.1\|WP_013233887.1\|2137089_2140278_-\|Rne/Rng-family-ribonuclease	unknown	unknown	gnl\|CDD\|236766
NZ_CP011930.1\|WP_013233882.1\|2131468_2131870_+\|group-II-truncated-hemoglobin	unknown	unknown	gnl\|CDD\|381282
NZ_CP011930.1\|WP_085943896.1\|2117760_2118978_-\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|377115
NZ_CP011930.1\|WP_013233876.1\|2125818_2126106_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP011930.1\|WP_013233872.1\|2120806_2122198_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP011930.1\|WP_013233877.1\|2126206_2126512_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP011930.1\|WP_041310518.1\|2124079_2125498_+\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|182626
NZ_CP011930.1\|WP_041310520.1\|2128452_2128803_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011930.1\|WP_013233874.1\|2123019_2124000_+\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha	unknown	unknown	gnl\|CDD\|235580
NZ_CP011930.1\|WP_013233881.1\|2128888_2131387_+\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|225669
NZ_CP011930.1\|WP_013233885.1\|2135036_2135663_-\|molybdenum-cofactor-guanylyltransferase-MobA	unknown	unknown	gnl\|CDD\|234725
NZ_CP011930.1\|WP_013233873.1\|2122199_2122859_+\|DNA-3-methyladenine-glycosylase-2-family-protein	unknown	unknown	gnl\|CDD\|223200
NZ_CP011930.1\|WP_041310522.1\|2131892_2133359_+\|DNA-recombination-protein-RmuC	unknown	unknown	gnl\|CDD\|224241
NZ_CP011930.1\|WP_048348526.1\|2119014_2120574_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|235334
NZ_CP011930.1\|WP_013233878.1\|2126772_2127432_+\|LysE-family-transporter	unknown	unknown	gnl\|CDD\|182514

Protein	Function_ID	Function_description	E-value
NZ_CP011930.1\|WP_013233869.1\|2117194_2117764_-\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|238901	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.	2.83966e-75
NZ_CP011930.1\|WP_013233884.1\|2133753_2135040_-\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	1.09637e-172
NZ_CP011930.1\|WP_013233880.1\|2127888_2128287_-\|DUF1311-domain-containing-protein	gnl\|CDD\|226278	COG3755, COG3755, Uncharacterized protein conserved in bacteria [Function unknown].	8.18164e-18
NZ_CP011930.1\|WP_041310524.1\|2135676_2136792_-\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	3.9714e-174
NZ_CP011930.1\|WP_013233888.1\|2141079_2142147_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|182909	PRK11025, PRK11025, 23S rRNA pseudouridine(955/2504/2580) synthase RluC.	7.58764e-128
NZ_CP011930.1\|WP_013233887.1\|2137089_2140278_-\|Rne/Rng-family-ribonuclease	gnl\|CDD\|236766	PRK10811, rne, ribonuclease E; Reviewed.	0
NZ_CP011930.1\|WP_013233882.1\|2131468_2131870_+\|group-II-truncated-hemoglobin	gnl\|CDD\|381282	cd14773, TrHb2_PhHbO-like_O, Truncated hemoglobins, group 2 (O); Pseudoalteromonas haloplanktis PhHbO like. The M- and S families exhibit the canonical secondary structure of hemoglobins, a 3-over-3 alpha-helical sandwich structure (3/3 Mb-fold), built by eight alpha-helical segments. Truncated hemoglobins (TrHbs, 2/2Hb, or 2/2 globins) or the T family globins adopt a 2-on-2 alpha-helical sandwich structure, resulting from extensive and complex modifications of the canonical 3-on-3 alpha-helical sandwich that are distributed throughout the whole protein molecule. TrHbs are classified into three main groups based on their structural properties and named after Mycobacterium sp. genes glbN, glbO, and glbP: TrHb1s (N), TrHb2s (O) and TrHb3s (P). TrHb2's belonging to this group include Pseudoalteromonas haloplanktis PhHbO (encoded by the PSHAa0030 gene) which appears to be involved in oxidative and nitrosative stress resistance.	2.93656e-64
NZ_CP011930.1\|WP_085943896.1\|2117760_2118978_-\|L,D-transpeptidase-family-protein	gnl\|CDD\|377115	pfam03734, YkuD, L,D-transpeptidase catalytic domain. This family of proteins are found in a range of bacteria. It has been shown that this domain can act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. This gives bacteria resistance to beta-lactam antibiotics that inhibit PBPs which usually carry out the cross-linking reaction. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue. Several members of this family contain peptidoglycan binding domains. The molecular structure of YkuD protein shows this domain has a novel tertiary fold consisting of a beta-sandwich with two mixed sheets, one containing five strands and the other, six strands. The two beta-sheets form a cradle capped by an alpha-helix. This family was formerly called the ErfK/YbiS/YcfS/YnhG family, but is now named after the first protein of known structure.	4.36044e-22
NZ_CP011930.1\|WP_013233876.1\|2125818_2126106_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	5.50874e-07
NZ_CP011930.1\|WP_013233872.1\|2120806_2122198_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP011930.1\|WP_013233877.1\|2126206_2126512_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	2.27981e-05
NZ_CP011930.1\|WP_041310518.1\|2124079_2125498_+\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|182626	PRK10660, tilS, tRNA(Ile)-lysidine synthetase; Provisional.	2.2036e-79
NZ_CP011930.1\|WP_013233885.1\|2135036_2135663_-\|molybdenum-cofactor-guanylyltransferase-MobA	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	2.11122e-85
NZ_CP011930.1\|WP_013233874.1\|2123019_2124000_+\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha	gnl\|CDD\|235580	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated.	0
NZ_CP011930.1\|WP_013233881.1\|2128888_2131387_+\|FtsX-like-permease-family-protein	gnl\|CDD\|225669	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	0
NZ_CP011930.1\|WP_013233873.1\|2122199_2122859_+\|DNA-3-methyladenine-glycosylase-2-family-protein	gnl\|CDD\|223200	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair].	2.84496e-56
NZ_CP011930.1\|WP_041310522.1\|2131892_2133359_+\|DNA-recombination-protein-RmuC	gnl\|CDD\|224241	COG1322, COG1322, Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only].	1.73008e-100
NZ_CP011930.1\|WP_048348526.1\|2119014_2120574_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	8.08201e-19
NZ_CP011930.1\|WP_013233878.1\|2126772_2127432_+\|LysE-family-transporter	gnl\|CDD\|182514	PRK10520, rhtB, homoserine/homoserine lactone efflux protein; Provisional.	2.90467e-59

>NZ_CP011930.1|WP_013233878.1|2126772_2127432_+|LysE-family-transporter
MDYQTWFAFFAAACVIAISPGSGAVLSMSHGLNYGVRRTSATILGLEIALVVILIIAGAGVGSLLVASETAFNVIKVAGALYLIYLGFSQWRARVPSEEQGEALDAANASARAHARQTWWQRCMTGFLTNATNPKGIVFMVAVLPQFIDHDRPLWLQLLVLAVTMVAVDLVVMHGYAFAASRLQRFFRSQKAIRAQNRFFGGVLMLVGAGLFFFKRTQH
>NZ_CP011930.1|WP_013233877.1|2126206_2126512_-|hypothetical-protein
MKTKSVIVASLLTALALPVFAQSGATAPAAAAPAATTAAPAKAEAGKTEATPKAKSEHHAKHKKSEKKSEAKAEGKTEKKAEKKEAAGADAKPAADTAKTK
>NZ_CP011930.1|WP_013233876.1|2125818_2126106_-|hypothetical-protein
MKTKTIIVASLLSALTLPVFAQTGAAAPATPAAPAAAAAATAAAPAKAEAAKTETAPKAKHHAKHKKAEKKGEAKAEKKEAAGTEAKPAADGAKK
>NZ_CP011930.1|WP_041310518.1|2124079_2125498_+|tRNA-lysidine(34)-synthetase-TilS
MSAHPRHARHTTLVLLQQALQDSLSASGFDAAHDTLAVAYSGGLDSTVLLWVAAQWARENGGTSRLAPLHVHHGLSPHADAWLAHAQACCAQLGLVLQSERVQLEGVADSGVEEAARLARYAALGRLCRQQGARVLLTAHHLDDQAETVLLQLLRGSGLAGLSGMDRCNTAPALLGDDRLLMARPFLGVTRAQLEAVADAMSLKWIEDESNSDPRYTRNALRHQVMPALGQVFPGYQQRLARAAGHAQGAQELLREVAEQDLAHCREDEHLRMPPLRELSEQRFLNLMRHWFGLRGMRMPSAAWMQEMRHQLLQADVEAQLCVSHPDGEVHRYRERVFLAPRRMPPDEGAVATLRWDGQAQWRLPAWYGTLHFDRIGGDDARPGFDPAWLQGQSLLACGRSGGERIRLAANRPARSLKQQYQSADVPAWERPYLPLVWAGESLLFAAGIGMDCGQFAPSATAQRIALRWQPD
>NZ_CP011930.1|WP_013233874.1|2123019_2124000_+|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha
MTKSTTTFLGFEQAIAELDAKIEELRFVQDDSAVDISEEIERLVKKSQQLTKDIYAKLTPWQVSQIARHPQRPYTMDYVREIFTDFHELHGDRTFADDQSIVGGLARFNGQACMVIGHQKGRDTKERAMRNFGMPKPEGYRKAMRLMKVAEKFGLPIFTFVDTPGAFPGIDAEERGQSEAIGHNLYVMAELKVPLIATIIGEGGSGGALAIAVGDSVLMLQYATYSVISPEGCASILWKTADRAADAAEALGLTAHRLKAIGLIDKIVNEPLGGAHRDPKQMAGLLKRALSDSLRQFQGMKTKDLLAARHEKLMAYGKFKELNSAE
>NZ_CP011930.1|WP_013233873.1|2122199_2122859_+|DNA-3-methyladenine-glycosylase-2-family-protein
MNTNRKASDVDPSLIVPAYWEEAKAELMKRDRIMRKIIPQFGDLQLTVRGDAFTTLARSVIGQQISTKAANAVWQRFLEACPRCTPGQVIRTGPEGLAGCGLSKRKAEYILDLAAHFKAKTVHPDKWAEMEDEAVIAEMIQIRGIGRWTAEMFLIFNLLRPNVLPLDDLGLLKGISISYFSGEPVSRSDAREVAANWEPWRTVATWYLWRSLDPLPSDY
>NZ_CP011930.1|WP_013233872.1|2120806_2122198_+|cysteine--tRNA-ligase
MSELKIYNTLARDKQTFSPIEPGKVRLYVCGMTVYDYCHIGHARVLVVFDMVQRWLRASGYEVTYVRNITDIDDKIIKRAVENGETIAQLTNRFIDAMNEDAAALGVQRPDHEPRATQYVPQMLDLIGKLEKNGLAYKASDGDVNYSVRDFPGYGKLSGKSLDDLRAGERVDVNTGKRDPLDFVLWKAAKPAEPDEAKWDSPWGCGRPGWHIECSAMSSDLLGDHFDIHGGGQDLQFPHHENEIAQSEGAHQHTFVNYWMHNGFVRIDNEKMSKSLGNFFTIRDVLKKYDPEVLRFFILRAHYRSPLNYSDAHLDDARQALTRLYTALKDVPPQAGGLVADEAHAVRLADALNDDFNTPVAIAVLFELANEVNRSRSPVQARQLKALAGILGLLQREPGEYLKGGVAAAEGLGEAEIEALIAARKAAKAGKNFAEADRIRAELTEAGIILEDKPGGLTEWRRA
>NZ_CP011930.1|WP_048348526.1|2119014_2120574_-|tetratricopeptide-repeat-protein
MAPESQEQTPIHGLRDLISKTAHKTAVMSSLVAALFAAPASLAHASEMSDINKLMRAGQYAEALTKTDAVLAKHPRDAQLRFTKGLILAEQNRSAEAIAVFTKLTEDFPDLPEPYNNLAVLYAADGQYDKARAALDMAMRTNPTYATALENLGDVYAKLASQAYDKALQIDPGANVPQPKLTLLRSLNGNTTGGTVPRLASAAAAQREAKAKAEASAAEQQQRAKALAAEKLAQQAAADKAEAEKNAISKATSEKEKAAADKAAAEKAAADKAAADKAAADKAAAEKAAADKAAAEKARAEKARAEQLAAEQARAQKAAAEKAAAEQKQKELLAQKDKEQAEKLAREQAARAEKEKAAQAAADKAKADKLAAAEKAKADKLAAAEKAKADKARADKEKAKEQASAEQDKTAVLAALNGWAKAWSDKDVRGYLGHYASDFDTPKGASRKEWAEERRARIEDKGRISVKVSNATVSINGNTATVRYRQIYNSDRLTVDSRKTLIFVKQGNRWLIKQERSGG
>NZ_CP011930.1|WP_085943896.1|2117760_2118978_-|L,D-transpeptidase-family-protein
MLGRLLMLCLAGLPSVGSVASSSSIPPQSAPAGAPVAKPDPEALLIDIYKDLGANRLREAQAKADALVAAYPTFRLGHLVRGDLLLMHARPVRNFGAMADGPADKLKELRDEAMVRIRSLQEKPDPNLIPKAVLQVGEDQKNVLVVDTTRSRMYVYENQGGELKFQTDFYISQGRFGANKSKSGDQRTPIGVYYVNNRIPGPKLPDFYGTGALPLSYPNEWDKRNGRSGYGIWLHGTPSDNFSRPPLSSDGCVVLANPDLQSLYSTAEVGKTVVVISQHVQFVDKNEWARQRDAASAILEQWGQSLENADPEKVLSYYSPEFRSAQGESLATWFGRQQKSLNGARYTSVKLRDVSLFRYPGTPEDMIVSTFTQESAVGKSKNAIRKRQYWVREGSQWKIIYEGNA
>NZ_CP011930.1|WP_013233869.1|2117194_2117764_-|peptidyl-prolyl-cis-trans-isomerase
MILSRRHLLRMAAALSLSTALAVPALAADAPRVLLKTSMGDITVELNPEKAPVSVENFLKYVKKGQYNGTVFHRVINGFMIQGGGMDQNLREKPTDAPIKNEANNGLKNEVYTIAMARTSAPHSATAQFFINVANNRFLDYPGQDGWGYAVFGKVVAGTEVVDKIKQVRTGAGDVPSTPVVIESATLVK
>NZ_CP011930.1|WP_013233880.1|2127888_2128287_-|DUF1311-domain-containing-protein
MKALLRSLSLLGALLVLGSQAAQAADCTKAATQAEMNACASQTLTQSDADLNATYMAYRDKLDRARQNELREVQLAWLKYRDLSCRFESAASAGGSVAATVRQTCLAEKTRQRTDELKALAGCQEGDVACVR
>NZ_CP011930.1|WP_041310520.1|2128452_2128803_+|hypothetical-protein
MGLSWLSAIKLIPWGDVVQATPGIVRGARELWSRTRKANTAAQAPQVAPAATDAERLAQRIGQLEAEQLEATQLINTLAEQNAQLVATVDGMRRRLRMQTAFCVLLAVGLAALWWR
>NZ_CP011930.1|WP_013233881.1|2128888_2131387_+|FtsX-like-permease-family-protein
MFQQALRMTWRDWRTGELRFLLIALIVAVASLSSVGFFVDRMRAGMTRDAHQLLGADLLVAADQPLPPQWMQRAAAQGLQQAQTQVFPSMAQAGEGDAARAVLASIKAVTAGYPLRGQLRLQTASGADRPAEGIPQPGTVWVDPQILSQLDVRVGDTLKLGDLPLKIAAVIAVEPDRGSAFVNFAPRVMLGEADLAATHLVQVGSRVTYRLLLAGPAPVVKQFQQELERQIEADKLRGVRLESLENGRPEMRATLDRAEQFLSLVGLLSAMLAALAVAMAARRFMLRHLDACAMLRCFGLTQAQVTRLYLGEFMLVGLAASVLGMLIGYAAHFALLQWLGNFMPTALPPAGWQPAVQGVAAGLLLLLGFALPPILQLRNVPHNRVIRRDQLTPQPLTVATYGLGTLVFSGLLLWQAGDLKLGLLTIAGFLGGFGLFALVAWLCLRALRSLRGLVDRQSWRFAIDGLQRRPAAAVMQVVALGLGLMALLLLTVIRGDLVGAWRQATPADAPNRFIINIQPDQRQAVEQLLRQGGVGDVALYPMIRGRLVQINGRAISAADYAEDRAKRLVDREFNLSTLREIPPGNGIVAGRWYDDRQPEASVERGLAQTLGIKLGDRLQFDIAGQLVEAPVTSLRKLEWGSLRVNFFVILNPTLMRDTPQSWITAVHLNPQQEALGNTLTRDYPNLTVVDIGSVLRQIQDVVGQVISAVEFLFLFTLCSGVLVLYAALAGSQDERVREAGLLRALGATRVELARAQRIEVLLVGALAGLLAASGAAAIGWALAHYVFNFDWSFSPLVWLAGMSLGAACSALGGWAGLRHVLRRPPLQTLREG
>NZ_CP011930.1|WP_013233882.1|2131468_2131870_+|group-II-truncated-hemoglobin
MQIEDPNQPTTFELIGGAEKLREMVDRFYDLMDLEPEFAGIRALHPPSLEGSREKTYMFLSGWTGGPSLYMEKFGHPRLRARHLPFPIGISERDQWLRCMTWAMQDVGLPEDLMKRLLAALYQTADWMRNKPE
>NZ_CP011930.1|WP_041310522.1|2131892_2133359_+|DNA-recombination-protein-RmuC
MILAGLVVAGIVLQVLVLLRSGQREEVGAEVEEMLAHMQQVLQRHQQDIGERIERELRSQVQASAQSTRQELGASFAQLQQTLATQMASVASLQNQQIDGFAQQLVKLNETNAQQLDSMRQSITLQAQVSREEQAVSLKRFGDTLNQQLSALTESNAQRMGEVRATLEAKIKDLQTDNAQKLDEMRKTVDEKLHATLEQRLGESFKLVSDRLDKVHQGLGEMQQLATGVGDLKRVLTNVKTRGTWGEVQLEILLEQMLTPEQYGKNVETVRGSGERVEFAIRLPGAKEEGEPVWMPIDAKFPKEQYERLVEAAERADADGVAAAGKELERAVRTEARTIAEKYLSPPLTTDFAILFLPTEGLYAEVMRRPGLSDDLQRSCRVTIAGPSTLSALLNSLQMGFRTLALEKRSSEVWQVLGAVKTEFGKFGEVLASTKTALERAARNIDQAETRTRQMTRKLKSVEALPADAAQKLLGAAEPELGESDEAL
>NZ_CP011930.1|WP_013233884.1|2133753_2135040_-|molybdopterin-molybdotransferase-MoeA
MTLPSLNDIVSCISGYDPHAMTVERAQAVIREFIHPIEAVEKLPIRSALSRVLAQDIVSRIDVPAHDNSAMDGYALRGEDLAEGRELRLQIIGEVHAGDRFTGQVGPGQCVRIMTGAPMPAGCDTVIPQELTVDADQSAVTVPPGRVRAGDNRRLRGEDLALGSVALPRGRILRPSDIGLLASLGLAEAPVQRRLRVAFFSTGDELRSVGEPLDEGCVYDSNRYTLHGMLTRLGCEVLDMGVVPDDPAALEAAFRSACEEADAVITSGGVSVGAADYTKQIMASLGEMAFWKIAMRPGRPLAFGRIRSRGREAYLFGLPGNPVAVTVSFSFFVRDALLRLAGAEAKPLPRLRVKTATAIRKKAGRTEYQRGILAPDDSGNWSVRLTGMQGSGILRSMSDANCIIELEHDRGDVAAGEEVAVVLFDGLV
>NZ_CP011930.1|WP_013233885.1|2135036_2135663_-|molybdenum-cofactor-guanylyltransferase-MobA
MRSAATTSSLLCTSHITGLVLAGGRGTRMGGVDKGLQLLHGKPLVQHVLERLAPQVGTLAINANRSQLEYARFGYPVWHDLEEGFPGPLAGLHSGLVHCTTDFLASTPCDSPLIPYDMVARLATALAEAKADAAVALTDGAHGRQRHPVCSLLRRSTQASLQAFLAAGERKMDHWFATLACVEVEFPDERAFCNINTGLELQRLEEEQ
>NZ_CP011930.1|WP_041310524.1|2135676_2136792_-|GTP-3',8-cyclase-MoaA
MNQRVIPIVDYRQAFPASEAGRLAPMAVQPTGWLSDSLGRPLHDLRISVTDRCNFRCVYCMPKDVFDKQYQFLPHSDLLTFEELTRVAAQFVAHGVRKIRLTGGEPLLRKNIETLIGMLAALRTPEDEPVDLTLTTNGTLLKQKAQALKDAGLKRVTVSLDSLDDEGFRRMNDVDFPVARVLEGIDAAHAAGLGPVKINMVVKKGVNDDQILPMARYFKGTPAILRFIEYMDVGSSNGWRMDEVLPSAEVVRLIATEMPLEVADPNYTGETAERWRYVDGSGEIGVISSVTQAFCQDCSRARLSTEGRVYTCLFASEGHDLRSIVRSGGSDAEIAGAIAALWGQRGDRYSELRSALREAPLRKVEMSYIGG
>NZ_CP011930.1|WP_013233887.1|2137089_2140278_-|Rne/Rng-family-ribonuclease
MKRMLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNYGEERHGFLPFKEVARSYFKEGIDVRNASIKEALREGQEIIVQVEKEERGNKGAALTSFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLPNGMSVIARTAGIGRNVDELQWDLNYLMQLWRAIEGAGQSASGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIHDQAQQFMAHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSVDVNSARATRGSDIETTAFNTNLEAADEVARQLRLRDLGGLIVIDFIDMENSKNQREVEGRLKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAMKENSAAIHVQAPVDVAAFLLNEKRGEILKIETRHRVTVIMIPNKHLETPHYKMERIKHDDPRLDDAQASYTMAEQADTDIGYSKRQKEDVRPRQEAVVKGITPDQPAPIVERKAPEPVAAPVPPPTLAPESGLLGKIFSFFRKKPVAPVAAPAPVEAKAPAKREGERNGRGGDRNGRNRNRNERGDRAERGERAERNGEQRNGRNPAAAELKAGDAAEGKQVRAPRPPREPKEGREPREPRELQAQARDGQEVKETRRNEPREAREPREGREGREPREGREPRAPRAPRGERKEAKSEEGLPLEAALAAGTAGVAVAAGTAVIASDEAATQVEAAQVEAGEAGEGAETAEGATEPRRRRRRGGRNRHRRERDENGNLIDNAEAGDSAEGDAAETAEGAEAAIPAFVPVADAAAASAQAAVAQASFAASPVPAAEDAPVAESAAKVESGVNSVEAVAAAAAEATEAVFSHQPAIEPVAPSIDASFAPAPVEAAVQAPAQAPAASEAPVEVVPVVAAEPVAAPAPVVQQQISLLDAVEAAPVVASAPAAPAAPAAPAPQAAPAPAQAAGNGAQWDSLQQMLSQAGLTLATTDPVKLRAAQEAAAAFVPAPRVPRERKPLPPQSTEPLVQVETRR
>NZ_CP011930.1|WP_013233888.1|2141079_2142147_+|RluA-family-pseudouridine-synthase
MKDLARFSRGASESAKAAPASRNATASQSVPQVQLLTISDEEAGQRIDNFLLRVCKGVPKSHIYRVLRSGEVRVNKGRIDQTYRLAEGDVVRVPPIRVAEKQETVVPGAEFRILLEDSHLLVIDKPAGVAVHGGSGVSYGVIEQLRAARPQAKFLELVHRLDRDTSGVLLIAKKRSALTNLHDQMREGTTDKRYFTLVQGDWKNARQHVKLPLFKYSTPDGERRVRVQADGQPSHTVFSLLRRFGDFALLEAELKTGRTHQIRVHLSSSGFPIVGDDKYGDFALNKALQKADGRRIAFKRMFLHAWRISFRHPESGDTVTLKAGLPQECASFLRSLEGGEEGELLPYGMLACAEG

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Crispr_ID: NZ_CP011930_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011930_2

4328733-4328869

Orphan

Consensus_repeat	Method
CACCTCCCGTTCGGACTGAGTAGCCCCGAAGGGGCGTATCGAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011930_2

>merge|NZ_CP011930|2|4328733-4328869|CRISPRCasFinder
CACCTCCCGTTCGGACTGAGTAGCCCCGAAGGGGCGTATCGAAGGCAAGCCGGCGCAGGAAATGAAAGAAACGTATCGACTGATGAAAAATCCCACCTCCCGTTCGGACTGAGTAGCCCCGAAGGGGCGTATCGAAG

>NZ_CP011930|2|2|4328733-4328869|CRISPRCasFinder
CACCTCCCGTTCGGACTGAGTAGCCCCGAAGGGGCGTATCGAAG	GCAAGCCGGCGCAGGAAATGAAAGAAACGTATCGACTGATGAAAAATCC
CACCTCCCGTTCGGACTGAGTAGCCCCGAAGGGGCGTATCGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011930.1\|WP_041311188.1\|4339086_4340244_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277331
NZ_CP011930.1\|WP_041311189.1\|4340562_4341105_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011930.1\|WP_013235727.1\|4338122_4339115_+\|GlxA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
NZ_CP011930.1\|WP_041311184.1\|4319347_4319920_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011930.1\|WP_013235713.1\|4315652_4317251_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP011930.1\|WP_013235718.1\|4324308_4326501_-\|potassium-transporting-ATPase-subunit-KdpB	unknown	unknown	gnl\|CDD\|234905
NZ_CP011930.1\|WP_013235720.1\|4329120_4331337_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP011930.1\|WP_013235712.1\|4314407_4315382_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170
NZ_CP011930.1\|WP_013235714.1\|4318461_4319253_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|181249
NZ_CP011930.1\|WP_013235726.1\|4336809_4338021_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341028
NZ_CP011930.1\|WP_013235719.1\|4326562_4328344_-\|potassium-transporting-ATPase-subunit-KdpA	unknown	unknown	gnl\|CDD\|235494
NZ_CP011930.1\|WP_013235724.1\|4335028_4336060_-\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225041
NZ_CP011930.1\|WP_013235717.1\|4323658_4324270_-\|potassium-transporting-ATPase-subunit-KdpC	unknown	unknown	gnl\|CDD\|376890
NZ_CP011930.1\|WP_013235723.1\|4333940_4334951_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274646
NZ_CP011930.1\|WP_013235725.1\|4336127_4336733_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP011930.1\|WP_013235721.1\|4331577_4333161_-\|gamma-glutamyltransferase	unknown	unknown	gnl\|CDD\|223482
NZ_CP011930.1\|WP_013235715.1\|4319938_4320649_-\|response-regulator	unknown	unknown	gnl\|CDD\|182522
NZ_CP011930.1\|WP_013235722.1\|4333235_4333781_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP011930.1\|WP_041311185.1\|4320658_4323415_-\|sensor-histidine-kinase-KdpD	unknown	unknown	gnl\|CDD\|225115
NZ_CP011930.1\|WP_041311187.1\|4328345_4328435_-\|K(+)-transporting-ATPase-subunit-F	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP011930.1\|WP_041311188.1\|4339086_4340244_-\|metallophosphoesterase	gnl\|CDD\|277331	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	8.52718e-88
NZ_CP011930.1\|WP_013235727.1\|4338122_4339115_+\|GlxA-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	2.97386e-90
NZ_CP011930.1\|WP_013235713.1\|4315652_4317251_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	2.65651e-105
NZ_CP011930.1\|WP_013235718.1\|4324308_4326501_-\|potassium-transporting-ATPase-subunit-KdpB	gnl\|CDD\|234905	PRK01122, PRK01122, potassium-transporting ATPase subunit KdpB.	0
NZ_CP011930.1\|WP_013235720.1\|4329120_4331337_-\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.50411e-62
NZ_CP011930.1\|WP_013235712.1\|4314407_4315382_-\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	3.00072e-11
NZ_CP011930.1\|WP_013235714.1\|4318461_4319253_+\|enoyl-CoA-hydratase	gnl\|CDD\|181249	PRK08139, PRK08139, enoyl-CoA hydratase; Validated.	3.88178e-146
NZ_CP011930.1\|WP_013235726.1\|4336809_4338021_-\|MFS-transporter	gnl\|CDD\|341028	cd17475, MFS_MT3072_like, Mycobacterium tuberculosis uncharacterized MFS-type transporter MT3072 and similar transporters of the Major Facilitator Superfamily. This family includes the Mycobacterium tuberculosis uncharacterized MFS-type transporter MT3072. It belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.7034e-83
NZ_CP011930.1\|WP_013235719.1\|4326562_4328344_-\|potassium-transporting-ATPase-subunit-KdpA	gnl\|CDD\|235494	PRK05482, PRK05482, potassium-transporting ATPase subunit A; Provisional.	0
NZ_CP011930.1\|WP_013235724.1\|4335028_4336060_-\|NADP-dependent-oxidoreductase	gnl\|CDD\|225041	COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only].	0
NZ_CP011930.1\|WP_013235717.1\|4323658_4324270_-\|potassium-transporting-ATPase-subunit-KdpC	gnl\|CDD\|376890	pfam02669, KdpC, K+-transporting ATPase, c chain. This family consists of K+-transporting ATPase, c chain, KdpC. KdpC forms strong interactions with the KdpA subunit, serving to assemble and stabilize the Kdp complex. It has been suggested that KdpC could be one of the connecting links between the energy providing subunit KdpB and the K+-transporting subunit KdpA. The K+ transport system actively transports K+ ions via ATP hydrolysis.	6.54677e-109
NZ_CP011930.1\|WP_013235723.1\|4333940_4334951_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274646	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP011930.1\|WP_013235725.1\|4336127_4336733_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.18716e-13
NZ_CP011930.1\|WP_013235721.1\|4331577_4333161_-\|gamma-glutamyltransferase	gnl\|CDD\|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	1.14407e-150
NZ_CP011930.1\|WP_013235715.1\|4319938_4320649_-\|response-regulator	gnl\|CDD\|182522	PRK10529, PRK10529, DNA-binding transcriptional activator KdpE; Provisional.	1.67503e-97
NZ_CP011930.1\|WP_013235722.1\|4333235_4333781_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.4882e-07
NZ_CP011930.1\|WP_041311185.1\|4320658_4323415_-\|sensor-histidine-kinase-KdpD	gnl\|CDD\|225115	COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms].	0

>NZ_CP011930.1|WP_041311187.1|4328345_4328435_-|K(+)-transporting-ATPase-subunit-F
MNLMYALGLAVSVALLLYLVYALIKPEDF
>NZ_CP011930.1|WP_013235719.1|4326562_4328344_-|potassium-transporting-ATPase-subunit-KdpA
MDSNNYYQLGLYLAVLLLLSLPLGWYMARVMEGKSRVNRLFGGIERVFYRLCGISREHEMDWKQYAIAVVLFNFIGAIAVYLLQRLQQWLPLNPAALASVSPDSSFNTALSFVTNTNWQGYAGESTMSYLTQMAALALQNFLSAATGIAIAFALIRGFARHSSKGIGNFWVDMTRSTLYVLLPLSVVLALVLVQQGSIQNFRAYQDVKTLEVTHYTVPKLDAAGQPLKDAKGEPVTEAQSTDKQTLPMGPVASQEAIKMIGTNGGGFFNANSAHPYENPTPLSNFLQMLAILIIPAALCTSFGVLVGDRRQGWAILAAMTLLFVVMTLVLMYAESQPNPMLASLHASGPGMMEGKETRFGIPASALFASITTAASCGAVNAMHDSLSPLGGLVPMLQMQLGEVVFGGVGSGLYGMLIFAVLAVFIAGLMIGRTPEYLGKKIGVFDMKMMSIAILMTPALVLIFTALSVMVEAGLAGIANPGAHGFSEILYAFSSAANNNGSAFAGLSANTPYYNITTGICTWLGRFGIIVPVLAMAGSLAGKKRLAATSGTLPTHGPLFVALLIGAVILVGALTYVPALALGPVVEHLQMMAM
>NZ_CP011930.1|WP_013235718.1|4324308_4326501_-|potassium-transporting-ATPase-subunit-KdpB
MTTPSSNTSASATVTPEAIPSAAQTARWMFDPKIVKPALADSFRKLSPRAQWRNPVMFVVYLGSILTTLLFIQAAVGQGEAPAGFIFAIAAWLWFTVLFANFAEALAEGRSKAQAAALRGVKKSVMAKKLRRADHVRGDGMQVLASQCEVVEGDSLRKGDLVLIEAGDTVPADAEVIEGVATVDESAITGESAPVIRESGGDFSAVTGGTRVLSDWIVVRVSVNPGEAFLDRMIAMVEGARRQKTPNELALTLLLVALTLVFLLVTVTLLPFSIFSVNAAGSGSPVSVTALIALLVCLIPTTIGGLLSAIGVAGMSRMMQANVIATSGRAVEAAGDVDVLLLDKTGTITLGNRQAAAFMPAPGVTERELADVAQLASLADETPEGRSIVVLAKNRFNLREREMANLGAEFIPFSAQTRVSGIDLGHRRIRKGAADAIRKLTRAADQRLPAQVESDIESIARRGGTPLVVIEWHAEAAMINQGAPIRILGTVELKDIVKGGIKERFGELRRMGIKTVMITGDNRLTAAAIAAEAGVDDFLAEATPEQKLALIRQHQAEGKLVAMTGDGTNDAPALAQADVAVAMNSGTQAAKEAGNMVDLDSNPTKLIEIVEIGKQMLMTRGSLTTFSIANDVAKYFAIIPAMFVGSYPQLGALNVMHLASPDSAIMSAVIFNALVIVALIPLALRGVRYRALGAAVLLRRNLLIYGVGGLLVPFVGIKLIDLLLSAFGLV
>NZ_CP011930.1|WP_013235717.1|4323658_4324270_-|potassium-transporting-ATPase-subunit-KdpC
MNTSTPHPLRPAITLFILLGVLLGGLYPLLVTGLAQAFFPQQANGSLIERQGQVVGSALIGQNFTSPAYFWGRPSAAGTFPDNGMASGGSNLGPTNPALKQAAEERAKALREADPQNRRDIPIDLLTASASGLDPHISPAAADFQAARVARERGMTVEQVRALIRVNSEAPQWGLFGEPRVNVLKLNLALDAAAPLPKTDARQ
>NZ_CP011930.1|WP_041311185.1|4320658_4323415_-|sensor-histidine-kinase-KdpD
MTTRPDPDDLLERVMRDEERQARGRLKIFFGFSAGVGKTFAMLEAAQALAAQGGDVVAGVVETHGRAETEAQLAGLARLPMRMVAYRDRQLPEFDLDAALERKPGVILVDELAHSNVPGSRHAKRWQDIDELLRAGIDVYTTLNVQHIESLNDVVGQITGIRVFETVPDHVFDEADDVMLVDIPPDELLARLQQGKVYLPQQAEKAGRNFFRKGNLIALREIALRRTADRVDADMRQYRADRSIAQLWQARECIVVAIGSGSGEERLIREAARLAAKLQAQWLAVHVDLPGQRQAMEARERVVSYLKLAHSLGAETASISGEELAAALLQFARSRNAGKLVIGQEEGGLRRLLRWPRGTLAQRIARSGGEIDLYTIARSRTRHQHEPASPDSAASAAEALLTRRRRTRGTLWAVASCAITTTLAFLLDGKLHPANVIMLYLVGVMLVAMRYGRAASALVSVLSVLSFDFFFVDPRFSITVSDAQYLLTLAVMLAVSLFISSLAARLRRQASVAMQREARAANLYMLGKELSALLTLDQILEIGRRHLAAVFGARIAFFLPDSADQLRLAEPEQDSGAAHVFRNVDAGVAQWVYDNGQAAGKGTATLPSAAALYLPLTATMRTRGVLAFAIEAPSEEERQLAAAQLALPENRQMLEIFCSQIAMAIERLHYAEVAQDALVTMESERLRNSLLSAISHDLRTPLTSLVGSADVLAANARLDDDARAMARTISEQSQKMVGLMNNLLDMARLQAGVVTLNRQWNALEELAGSALRLLAKALEGRQVDTRIAPELPLLRVDAVLLERVLANLVENAIKYSPPGTPIGISAHVEHGDGAPQVKVCVMDQGRGFPPTMTQHAFEKFTRGDNESATPGVGLGLAICRAIIEAHQGRIWIAPQEAGQGATVCFTLPVETQPAPPEE
>NZ_CP011930.1|WP_013235715.1|4319938_4320649_-|response-regulator
MQEHAGNIVFIEDDPHIRKLVRSALEQEGFVVHEAKSAREGVTEAGTRKPDLIILDLGLPDGDGKQVISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQLRRHARASSAGQSSGRYRLGDVVVDLPARSVSRHGEALHLTQIEYRLLSTLLRDAGRVITHRQLLVAGWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRVADVVAE
>NZ_CP011930.1|WP_041311184.1|4319347_4319920_+|hypothetical-protein
MQADYATILQWIYLFNSLALAQLALKQLGRRRKARALEQRFRAAQTAEWRNTAPDFLTSRLGAPHAQQSVDDGATLYRWRGERHWLEARYREGQCESVDVSDHLEESFPTVNTYFNCAVLAALVCAWKFSGLADAPDLPVAAAGKQYLANFIVFLAGAWLLSFVLKRQRLLLNLGCIAMVVLALPLLNWP
>NZ_CP011930.1|WP_013235714.1|4318461_4319253_+|enoyl-CoA-hydratase
MKDHHPDILEREDQQGITTLTLNRPQHFNALSEEMLTALQAQLDDIKSDSTVRCVILAANGKAFCAGHDLRQMQATPQQTYYEALFHRCSHLMQSLRELPVPVIAKVQGLATAAGCQLVATCDLAIAAESARFAVSGINVGLFCSTPAVALTRNLPIKRAFEMLVTGKFIDAATAAAWGLINQAVPEQELDSATQALAREICSKPAISIARGKAMVYRQQMMALPDAYAHAAEVMACNIMDPEAQEGITAFLDKRKPNWAAPT
>NZ_CP011930.1|WP_013235713.1|4315652_4317251_-|methyl-accepting-chemotaxis-protein
MNNLSLKKKLWLPLVFSWMALLFLSVWHAYQTRDLQIAERERGLQDVTEMAYTTIAGYAKLESDGKLSREDAQKAAIARIRDQRYTGDGYVTLVDANSVIVMHPINSKLDGRNMLDFKDAKGNELYKMIAATGSSGAGKGYLEYWWPRPGSDQPSPKMGFVKRFKPWNWDLICSVYSDDIQADFRRALIQAVVVLIGLGVLLSLIAGMVSRNIFRSIGGEPGEAAEMARKIAAGDLTGVIHTTQGDEHSLVAAVAYTRDRLVDTVHGIKQATESIKTSVDEIATGNMDLSNRTEQQAGSLEETASTMEELTATVKQNAANAQHANQLASGAAQVAIQGGEVVGQVVQTMESINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLIDDSVGKVDAGTHLVQRAGQTMQEVVSSIQGVSTVVSEIATASHEQSSGIEQVGEAITQMDETTQQNAALVEQAAAAAQSLQDQADKLVRLVGVFTLERGRTAPAVTSAQPLLQ
>NZ_CP011930.1|WP_013235712.1|4314407_4315382_-|DMT-family-transporter
MSTAVATPTVPAAAARPAALSPAPASMSRLFLVCVVLAICIWGGNWPVMKFGSQFIPPLWFAASRFLSAAILSFVIAVVLGKLRLPTRQEWPVVVGVGVLQMGLFTALVTGALHFVMPGRASLIAYATSIWVVPGAALVLKQKLSPQQSLATVCSYAGMAVIVLPALLHADLHSMIGYLMLGVASLSWAMNILQIKMSPGVKLDFALLPWQTLVAALPLSLLALAVDGAPSFLADPHAWGVIAYTGPLATALTFLIVLQMTQRLSPVTVSVCMLGVPVVGLTLSSLVFGERLSSDLVLGMGLLCLGLVLPALPSLGLRRLATKG
>NZ_CP011930.1|WP_013235720.1|4329120_4331337_-|diguanylate-cyclase
MRFTGEPSCIQPYCCSSYQAYQLNKKKAPSPPNLSSLITLGVVVTVLVTTVSVLILVDQFTRGYARSEVETRLKQLAWQMQDALERGMAEREIDIRLLVSRPSIRQAQDPAHIRAVLEELQRNVPHYAWIGMARPDGTVLAATKGLLEGMSVAERPWFQQGQQTEYAADYHPAVLLEKKLPPQSDPWRFVDLSMPVLNMQGQMIGVMGMHLSWGWAREIASKLLNPTSSRYDVDVLIVRSDGTVILGPKDMEETKIDTASFRAAQHSSAGGSLIETWPDGRRYVTGYARTGQGGEMKLKWTVIVRQPETVALEAFRDLERRVIVVGALAGAVLVLLAFMLTRRLVAPINALSAALEQRAAGLQEVEIPLVTSVRELQLLSSALGTMVEREERYLREMRSLNESLEERVVERTSRLHETATALQQALDQQQTNQIQLEESAAELRAILENAQDAFIAADEHGHIVEWNRQAELLLGWPRDTVMGRSMAELIIPSDMRAAHNHGMAQFLKDGTSVVINNRIELQALHRDGHELPVEITVGHVKRQSGHLFIAFLHDITERLAFRDQMRELALTDVLTSLPNRRAFSDRLPEGMMRARRAHQLLALFFMDLDGFKGINDRYGHEAGDELLVEFARRLQASVRDVDTVARLAGDEFVVILENLQSQQDAIMVAEKILHAIREPFELTHSTVHISSSIGVAVYQPDLDGEIGPEELLSMADKAMYAAKRLGKNRIELGRVGDF
>NZ_CP011930.1|WP_013235721.1|4331577_4333161_-|gamma-glutamyltransferase
MLYSKTCLGGMVSAPHHLAAQAGAQILRQGGNAVEAMVAAAATIAVVYPHMNGIGGDGFWLISEPGRAPVAIRACGPAAALANKAFYAERGYRAMPTRGPHAALTVAGAVAGWAAALEHAQRFASGLPLPVLLADAIGHAQAGIPVTRSQHELTRDKWSELKDQPGFAATYAADGVPPQGKVLKQSALAASLSRLAEAGLDDFYRGDLAQSLAAGLQAAGSPLRRSDLEAFRAQVVQPLMVQLSSGRVYNLPPPTQGVSALMIIGLFDRLGVTQADGFAHLHGLVEATKRAFILRNQHVTDPAHMRVDAAQWLLAGALDQEVRHIDMQRAAPWPHPARPGDTIWMGAADAQGRVVSYIQSIFWEFGSGVVVPDTGIVWQNRGASFTLDEGVNQLQPGKLPFHTLNPSLAQLDDGRTLAFGTMGGEGQPQTQAAVFTRHVLFGQNLQAAVSAPRWLLGRTWGDVSTNLKLEGRIPEATIQALRRAGHEVQVVDDYADMMGHAGAVCVHPDGLIEGATDPRADGVCAGL
>NZ_CP011930.1|WP_013235722.1|4333235_4333781_-|GNAT-family-N-acetyltransferase
MDAPHHPDLVTLERLQESDLAEFARALQEAFTAGAQEAFGQPQDELIPSVEDVYASCQAANAVSYRLLRQGQPVGGAVLIIDAHSGHNSLDFFFISPQAHGRGLGTQAWQAIERAYPQTRVWETHTPYFEKRNIHFYLNKCGFKIVEFYHHQHPGPHRDEQSGPEMLDEMFRFEKRMDHPD
>NZ_CP011930.1|WP_013235723.1|4333940_4334951_-|LLM-class-flavin-dependent-oxidoreductase
MIPFSVLDLSPINQGSTAAQAFNNSKELAQRAEALGYHRYWLAEHHNMPGIASAATALVISHVAANTRSIRVGSGGIMLPNHSPLVIAEQFGTLESLYPGRIDLGLGRAPGSDQRTARALRRHMGGDTADTFPQDVQELQDYFDDPADYQTLRAVPGAGLKVPIWLLGSSMFSAQLAAELGLPFAFASHFAPGFMKSAVQIYRERFKPSATLKKPYVMLALNVFAADTQREAERLFTSLQQQFMNLIRGTPGQLRPPVDDIDALWQPGEQAHVARSLACAVVGDRQAVQDGLQAFMDEHAPDELIITAQIFDHAARLHSFEIAAEARQALREPVTI
>NZ_CP011930.1|WP_013235724.1|4335028_4336060_-|NADP-dependent-oxidoreductase
MTKTTPQTNRRIVLASRPTGAPTADNFRLEEVAVPALEEGQLLLRGQWLSLDPYMRGRMSDAPSYAPPVEIGGVMTGGVVSRVEASRHPEFKEGDLVMAYTGWQEYAVSDGTGVNKLPAGFAHPSHALGVLGMPGYTAYAGLIDIGQPRPGETVVVAAATGAVGSLVGQIAKLRGCHVVGIAGGAQKCEAAVKELGFDACIDHRAADFPEQLKAACPRGIDVYFENVGGAVLDAVFPLLNIHARVPVCGLIAHYNGGTLATDSAAILRRTLTQRMRVQGFIIFDYYVNRPDLHAAFQQEVGNWLKQGKLHYREDVVQGLENAPEAFMGLLQGKNFGKLVVKLD
>NZ_CP011930.1|WP_013235725.1|4336127_4336733_-|TetR/AcrR-family-transcriptional-regulator
MREHYGENKRNILMAGRALIAQKGYSSVGLSEILAAAAIPKGSFYHYFGSKEQYGRELIEHYVAGYLESLERVLGDPAHGASARERLLTYWGYWLESQCCQELEQRCLVVKLSAEVADLSEDMRQALHQGTQAFIERIAACIAQGIAEGSLHTVLHPLATATMLYQQWLGASLLSRLSRDRAPMEAAMLVTRRVLVLPEAG
>NZ_CP011930.1|WP_013235726.1|4336809_4338021_-|MFS-transporter
MQAAAPVLPRPSPSPSPHRWKVLAAGVAANASFSAVFSGIPVTSVVLRSDYRLSNTQLGLALGLLSLGVALGELPWGVLTDRWGDRKVLLAGLLGASAALGLLMLYALPGQGAASFAWLCAGLMLAGLLGGSVNGASGRAIMGWFGEGERGLAMSIRQTAVPLGGGLGALLLPTLAAQAGFGAVFAALMAACLASVGLVLRWLREAPVAPAHGAAPVVGAASMALRSKLVWRLALGIGLLCAPQVALLSFGGIFLQESAQASVLAISVLLTLVQLGAAAARIASGRWTDRRGQRRDYLRGCALASAALFGLLGVLAPLLVAAGVVVSAWHGVAYTELAVVAGAGQVGTALGLGNSCVFLVFFLAAQAIPPLLHWQGWPAVWLAIAVVALLVWPLFPPEDRARH
>NZ_CP011930.1|WP_013235727.1|4338122_4339115_+|GlxA-family-transcriptional-regulator
MPLRETAFLIFADCSMLDFTGPLSAFDAANRLAGKTLYRLTLYSEPGGMIRSSAGALIHTERIGRTSFDTLIVAGGGAPREGLVSPALRRHVLRAAARSRRIAGICTGAFVLAATGLLDGKRATTHWRMAAKLQQMHPAVKVDSDRIYSRDGAVWTSAGISAGIDLALALIEDDHGVELARSVARELVVYHRRPGGQSQFSALQEMDGGSERIRRALGFAREHLHQALTVDLLAEVACLSRRQFDRAFAAETGQTPARAIEQMRAEAARLRIEQSQDTLESIARATGFGDADRMRRACLRLFGQPPQAMRRLARAEDDQDRLSAPSGVHA
>NZ_CP011930.1|WP_041311188.1|4339086_4340244_-|metallophosphoesterase
MRRSYVGVAVFLGLLAALHVWIGWQLLPALSTQAGWITLGGVVLALSFLLMPIALVAPYLKRQGLPEVWSDRLSWAGMLAMGAFSSALLATLLRAIALALLPWLPLSPIQRHEMIELTAWLALALTAVATVIGYLNARRTAAVVEVSVPIANLPAALEGFSIVQISDIHVGPTIKAPYLQAIVDKVNALSPDVVAITGDLVDGSVRQLAPHTAPLAQLRARHGAYFVTGNHEYYSNAHEWIEEVRRLGLTVLMNEHVVLRHDDAGLVLAGVTDYTAHHFDPAHRSDPHAAIADAPDGHPRILLAHQPRSAQAAAEAGFDLQLSGHTHGGQFFPWNFFVPLQQPYVAGLKRLQGLWVYVSRGTGYWGPPKRLLAPSEITRVRLTAR
>NZ_CP011930.1|WP_041311189.1|4340562_4341105_+|hypothetical-protein
MSSSKTKRWHGNVEAIKAEFLNGVITQMTSYGDRVHFSMFGSVQKPHYEVINSFDKKMAFDGNHHLHRAEESEFGPGNVTPIFTLDQIKRIVATGGSGTRSTPRSARAASARSAGGTARPTTAAARAREAVDSEKYAYFKANRHMLPDEINQHSDEISKLMLNGMSAEQAFGEVISKYFD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

192094 : 241959

Burkholderia_virus(36.36%)

tail,protease,plate,integrase,tRNA,transposase

attL 227506:227524|attR 245473:245491

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013232230.1\|192094_192631_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_013232231.1\|192695_194042_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A191ZC11	Erwinia_phage	6.3e-40	27.9
WP_013232232.1\|194064_194268_+	hypothetical protein	NA	NA	NA	NA
WP_013232233.1\|194590_195763_+	porin	NA	NA	NA	NA
WP_013232234.1\|196282_197824_+	sel1 repeat family protein	NA	NA	NA	NA
WP_013232235.1\|197841_199956_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_041309959.1\|200180_200648_-	type II secretion system major pseudopilin GspG	NA	NA	NA	NA
WP_013232237.1\|200757_201090_-	iron donor protein CyaY	NA	NA	NA	NA
WP_048348476.1\|201139_201370_+	lipoprotein	NA	NA	NA	NA
WP_013232239.1\|201429_202722_+	diaminopimelate decarboxylase	NA	NA	NA	NA
WP_041309962.1\|203037_203967_+	hypothetical protein	NA	NA	NA	NA
WP_048348477.1\|204200_205658_+	sodium:solute symporter family protein	NA	NA	NA	NA
WP_013232242.1\|205855_206602_+	trehalose-phosphatase	NA	NA	NA	NA
WP_041309965.1\|206689_208579_+	glycoside hydrolase family 15 protein	NA	NA	NA	NA
WP_013232244.1\|208578_209973_+	alpha,alpha-trehalose-phosphate synthase (UDP-forming)	NA	NA	NA	NA
WP_013232245.1\|210152_210509_+	FmdB family transcriptional regulator	NA	NA	NA	NA
WP_013232246.1\|210527_211163_+	DUF502 domain-containing protein	A0A2I7S9X1	Vibrio_phage	7.4e-15	26.2
WP_041309968.1\|211261_213067_+\|tRNA	aspartate--tRNA ligase	A0A2K9L0E9	Tupanvirus	7.7e-17	29.4
WP_013232248.1\|213343_213937_-	hypothetical protein	NA	NA	NA	NA
WP_048348478.1\|213946_215383_-	hypothetical protein	NA	NA	NA	NA
WP_053075620.1\|215551_216301_-\|tail	phage tail protein I	E5E3V3	Burkholderia_phage	3.2e-09	32.9
WP_013232252.1\|216307_217432_-\|tail	tail fiber protein	Q6QI99	Burkholderia_phage	4.3e-82	48.3
WP_013232253.1\|217462_218650_-	hypothetical protein	NA	NA	NA	NA
WP_013232254.1\|218672_219104_-	hypothetical protein	NA	NA	NA	NA
WP_041309971.1\|219133_220321_-	hypothetical protein	NA	NA	NA	NA
WP_013232257.1\|220331_220823_-\|tail	tail-like protein	NA	NA	NA	NA
WP_013232258.1\|220819_221500_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	3.2e-08	28.1
WP_013232259.1\|221503_222670_-\|tail	tail fiber protein	Q6QI99	Burkholderia_phage	2.0e-87	49.5
WP_013232260.1\|222666_223092_-\|plate	bacteriophage baseplate assembly protein W	NA	NA	NA	NA
WP_013232261.1\|223160_223754_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_041311414.1\|223750_224767_-	bacteriophage regulatory protein	Q6QIA2	Burkholderia_phage	7.3e-65	40.7
WP_167578403.1\|224808_225039_-	hypothetical protein	A4JWL2	Burkholderia_virus	7.0e-16	54.8
WP_013232264.1\|225044_225635_-\|tail	phage tail protein	Q6QIA4	Burkholderia_phage	1.9e-28	50.0
WP_013232265.1\|225634_227974_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	1.2e-54	29.0
227506:227524	attL	NA	NA	NA	NA
WP_041309974.1\|228196_228454_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_013232267.1\|228457_228982_-\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	3.8e-49	50.6
WP_013232268.1\|229013_230456_-\|tail	tail protein	A4JWK5	Burkholderia_virus	2.3e-141	54.2
WP_013232269.1\|230491_230680_-	hypothetical protein	NA	NA	NA	NA
WP_013232270.1\|230920_231727_-	S24 family peptidase	NA	NA	NA	NA
WP_013232271.1\|231806_231998_+	DNA-binding protein	NA	NA	NA	NA
WP_013232272.1\|232038_232362_+	hypothetical protein	NA	NA	NA	NA
WP_013232273.1\|232374_233259_+	hypothetical protein	Q5ZR03	Pseudomonas_phage	1.1e-16	33.5
WP_013232274.1\|233271_235089_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q5ZR04	Pseudomonas_phage	1.8e-50	31.4
WP_041309977.1\|235126_236011_+	AAA family ATPase	A4JWN1	Burkholderia_virus	1.3e-70	49.7
WP_156181669.1\|236051_236408_+	transcriptional regulator	NA	NA	NA	NA
WP_013232277.1\|236489_236930_+	M15 family metallopeptidase	A0A0H3V0Q8	Geobacillus_virus	3.2e-25	42.6
WP_013232278.1\|236926_237349_+	hypothetical protein	A0A2I7S7C3	Vibrio_phage	5.2e-25	41.2
WP_013232279.1\|237345_237768_+	DUF1353 domain-containing protein	A0A2K9VHJ4	Pseudomonas_phage	9.2e-14	45.7
WP_013232280.1\|237751_238033_+	hypothetical protein	A4JWP6	Burkholderia_virus	7.0e-10	37.7
WP_013232281.1\|238395_239697_+	MFS transporter	Q6JIH2	Burkholderia_virus	2.4e-129	56.6
WP_013232282.1\|239705_240935_+	amidohydrolase family protein	NA	NA	NA	NA
WP_013232283.1\|241053_241959_+	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	1.4e-75	46.6
245473:245491	attR	NA	NA	NA	NA

DBSCAN-SWA_2

915591 : 1000666

Burkholderia_phage(23.68%)

tail,terminase,head,capsid,integrase,plate,tRNA,portal

attL 964356:964371|attR 995478:995493

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013232868.1\|915591_916539_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_085943893.1\|916539_918513_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	6.1e-84	33.9
WP_013232870.1\|918582_920556_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_013232871.1\|920937_923946_-	GGDEF and EAL domain-containing protein	NA	NA	NA	NA
WP_013232872.1\|924291_924954_+	membrane protein	NA	NA	NA	NA
WP_013232873.1\|925058_926420_-	AMIN domain-containing protein	A0A0N6W8I1	Bacillus_phage	1.9e-15	30.8
WP_013232874.1\|926383_926869_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_041310191.1\|926936_928082_+\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_013232876.1\|928094_928985_-	AEC family transporter	NA	NA	NA	NA
WP_013232877.1\|929000_929591_-	response regulator transcription factor	NA	NA	NA	NA
WP_013232878.1\|929644_931669_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_013232879.1\|932151_933156_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_013232880.1\|933278_933839_+	TRAP transporter small permease	NA	NA	NA	NA
WP_013232881.1\|933835_935116_+	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_013232882.1\|935616_936267_-	VOC family protein	NA	NA	NA	NA
WP_041310194.1\|936372_936876_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	NA	NA	NA
WP_048348499.1\|936885_937809_+	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	1.1e-30	30.9
WP_013232885.1\|937887_938388_+\|tRNA	aminoacyl-tRNA deacylase	NA	NA	NA	NA
WP_013232886.1\|938419_939037_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_013232887.1\|939132_940197_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.0e-93	53.1
WP_013232888.1\|940337_941348_+	DNA-binding protein YbiB	A0A2H4JBY5	uncultured_Caudovirales_phage	4.2e-20	33.3
WP_041310197.1\|941587_942040_-	hypothetical protein	NA	NA	NA	NA
WP_013232890.1\|943006_945127_+	EAL domain-containing protein	G3MA91	Bacillus_virus	9.6e-27	32.7
WP_041310200.1\|945110_946496_-	MATE family efflux transporter	NA	NA	NA	NA
WP_013232892.1\|946519_948244_-	glycosyl transferase	NA	NA	NA	NA
WP_008325780.1\|948478_948748_-	type B 50S ribosomal protein L31	NA	NA	NA	NA
WP_008325783.1\|949012_950275_-	transcription termination factor Rho	NA	NA	NA	NA
WP_013232893.1\|950406_950733_-	thioredoxin TrxA	A0A1J0GW78	Streptomyces_phage	2.1e-18	46.2
WP_013232894.1\|951179_953954_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA
WP_041310203.1\|953929_957427_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA
WP_013232896.1\|957785_958994_+	sodium:proton antiporter	NA	NA	NA	NA
WP_167578405.1\|959074_960220_+	glutamate--cysteine ligase	NA	NA	NA	NA
WP_013232898.1\|960416_961625_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_006462949.1\|961816_962029_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_013232899.1\|962327_962774_+	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	4.5e-27	48.6
WP_013232900.1\|962823_964620_+	DNA primase	A0A1S5RH32	Helicobacter_phage	2.6e-49	33.7
964356:964371	attL	NA	NA	NA	NA
WP_013232902.1\|965131_967684_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.0e-35	32.3
WP_013232903.1\|968050_968347_-	hypothetical protein	NA	NA	NA	NA
WP_081441881.1\|968548_968917_-	glyoxalase	NA	NA	NA	NA
WP_013232905.1\|969051_969486_-	hypothetical protein	NA	NA	NA	NA
WP_013232906.1\|969536_970007_-	hypothetical protein	NA	NA	NA	NA
WP_167578378.1\|970177_970852_-\|integrase	tyrosine-type recombinase/integrase	A0A076YL28	Mesorhizobium_phage	9.2e-08	27.9
WP_167578379.1\|970992_971331_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_013232908.1\|971311_971695_-	hypothetical protein	NA	NA	NA	NA
WP_008330650.1\|971691_971838_-	hypothetical protein	NA	NA	NA	NA
WP_013232909.1\|971834_973886_-	replication endonuclease	A4JWW0	Burkholderia_virus	9.7e-109	41.9
WP_041310210.1\|973875_974229_-	hypothetical protein	NA	NA	NA	NA
WP_041310213.1\|974317_974524_-	hypothetical protein	NA	NA	NA	NA
WP_013232910.1\|974603_974864_-	ogr/Delta-like zinc finger family protein	E5E3T8	Burkholderia_phage	1.6e-13	46.9
WP_013232911.1\|974854_975052_-	hypothetical protein	NA	NA	NA	NA
WP_013232912.1\|975044_975287_-	hypothetical protein	NA	NA	NA	NA
WP_013232913.1\|975600_976038_+	helix-turn-helix transcriptional regulator	A4PE57	Ralstonia_virus	2.4e-17	39.3
WP_013232914.1\|976159_976825_+	hypothetical protein	NA	NA	NA	NA
WP_013232915.1\|976825_978055_-	phage late control protein	K4PAY4	Burkholderia_phage	2.0e-80	48.9
WP_013232916.1\|978054_978582_-\|tail	phage tail protein	A0A2H4JG54	uncultured_Caudovirales_phage	1.8e-38	59.1
WP_013232917.1\|978595_981220_-\|tail	tail protein	A4PE52	Ralstonia_virus	3.7e-222	52.9
WP_006464173.1\|981220_981334_-\|tail	GpE family phage tail protein	A0A089FGX3	Burkholderia_phage	5.4e-06	67.6
WP_013232918.1\|981342_981666_-\|tail	phage tail assembly protein	A4PE51	Ralstonia_virus	7.3e-19	52.1
WP_013232919.1\|981725_982235_-\|tail	phage major tail tube protein	R4JEU1	Burkholderia_phage	3.4e-47	55.0
WP_013232920.1\|982289_983465_-\|tail	phage tail sheath protein	E5FFG9	Burkholderia_phage	7.0e-144	66.1
WP_156181836.1\|983484_983694_-\|tail	phage tail protein	NA	NA	NA	NA
WP_013232922.1\|983798_984473_-	hypothetical protein	A0A291LA10	Bordetella_phage	3.3e-05	40.0
WP_013232923.1\|984469_985006_-	hypothetical protein	NA	NA	NA	NA
WP_041310217.1\|985011_986745_-\|tail	phage tail protein	V5YST5	Pseudomonas_phage	2.1e-59	41.7
WP_041311533.1\|986753_987368_-\|tail	phage tail protein I	A0A2H4JAU2	uncultured_Caudovirales_phage	1.2e-59	56.3
WP_013232926.1\|987381_988305_-\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	7.8e-74	53.4
WP_013232927.1\|988301_988646_-	oxidoreductase	E5FFH4	Burkholderia_phage	1.4e-20	48.7
WP_013232928.1\|988642_989287_-\|plate	phage baseplate assembly protein V	A0A1B2LRU5	Wolbachia_phage	3.2e-18	38.5
WP_156181716.1\|989434_989686_-	hypothetical protein	NA	NA	NA	NA
WP_041310220.1\|989770_990238_-	phage virion morphogenesis protein	A0A2H4J927	uncultured_Caudovirales_phage	3.6e-35	50.7
WP_013232931.1\|990234_990720_-\|tail	phage tail protein	A0A2H4J906	uncultured_Caudovirales_phage	7.3e-31	52.3
WP_013232932.1\|990673_991243_-	lysozyme	NA	NA	NA	NA
WP_013232933.1\|991239_991770_-	glycoside hydrolase family 104 protein	C6ZR65	Salmonella_phage	1.2e-39	58.8
WP_041310223.1\|991766_992141_-	hypothetical protein	NA	NA	NA	NA
WP_013232935.1\|992181_992391_-\|tail	tail protein X	A0A0M3LPY0	Mannheimia_phage	5.4e-07	53.0
WP_013232936.1\|992390_992882_-\|head	head completion/stabilization protein	E5E3S2	Burkholderia_phage	2.3e-32	47.9
WP_013232937.1\|992969_993689_-\|integrase	integrase	A0A2H4J948	uncultured_Caudovirales_phage	7.7e-45	45.1
WP_013232938.1\|993688_994732_-\|capsid	phage major capsid protein, P2 family	A4PE30	Ralstonia_virus	3.9e-114	63.3
WP_013232939.1\|994781_995624_-\|capsid	GPO family capsid scaffolding protein	E5FFI7	Burkholderia_phage	2.3e-56	48.4
995478:995493	attR	NA	NA	NA	NA
WP_013232940.1\|995767_997549_+\|terminase	terminase ATPase subunit family protein	A4JWQ1	Burkholderia_virus	1.4e-228	64.2
WP_013232941.1\|997548_998601_+\|portal	phage portal protein	E5E3X1	Burkholderia_phage	3.3e-121	60.8
WP_013232943.1\|999010_999388_+	response regulator	NA	NA	NA	NA
WP_048348663.1\|999404_999668_-	hypothetical protein	NA	NA	NA	NA
WP_013232945.1\|999943_1000666_-	hypothetical protein	A4PE26	Ralstonia_virus	5.6e-35	36.6

DBSCAN-SWA_3

1597923 : 1605483

Phage_21(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013233416.1\|1597923_1599180_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	2.0e-11	59.3
WP_006463169.1\|1599325_1599532_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	3.1e-23	80.3
WP_013233417.1\|1599870_1600185_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	8.4e-12	44.4
WP_013233418.1\|1600181_1602485_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	4.7e-168	41.9
WP_041310391.1\|1602654_1603764_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_013233420.1\|1603763_1604213_-	dUTP diphosphatase	Q2NP83	Xanthomonas_phage	2.7e-48	62.8
WP_013233421.1\|1604286_1605483_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	3.9e-41	32.8

DBSCAN-SWA_4

3224189 : 3231859

Lake_Baikal_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013234797.1\|3224189_3224522_-	thioredoxin	A0A1V0SD63	Indivirus	1.8e-09	50.0
WP_013234799.1\|3225780_3227001_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA
WP_013234800.1\|3227014_3227464_+	Fe-S cluster assembly scaffold IscU	A0A2H4N7M4	Lake_Baikal_phage	2.4e-52	79.5
WP_013234801.1\|3227507_3227864_+	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	1.2e-27	53.7
WP_013234802.1\|3227876_3228197_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	8.5e-20	47.7
WP_013234803.1\|3228200_3230129_+	Fe-S protein assembly chaperone HscA	F2Y2E1	Organic_Lake_phycodnavirus	5.4e-101	39.0
WP_013234804.1\|3230180_3230519_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_013234805.1\|3230728_3231859_+	homocitrate synthase	E5EQ69	Micromonas_sp._RCC1109_virus	4.4e-10	26.0

DBSCAN-SWA_5

3365182 : 3375397

Bacillus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013234916.1\|3365182_3365608_-	nucleoside-diphosphate kinase	A0A167REB2	Powai_lake_megavirus	7.8e-21	42.1
WP_013234917.1\|3365883_3366573_+	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_013234918.1\|3366648_3368010_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	4.4e-25	25.8
WP_013234919.1\|3368177_3369191_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	3.5e-35	33.9
WP_013234920.1\|3369194_3370193_-	peptidoglycan DD-metalloendopeptidase family protein	A0A1P8CWQ1	Bacillus_phage	6.4e-05	42.1
WP_013234921.1\|3370420_3371386_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.2e-34	48.4
WP_041310929.1\|3371382_3372120_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	4.0e-73	56.7
WP_013234923.1\|3372204_3373152_-	flagellar brake protein	NA	NA	NA	NA
WP_013234924.1\|3373153_3375397_-	ATP-dependent DNA helicase	A0A127AW80	Bacillus_phage	4.1e-84	31.3

DBSCAN-SWA_6

5029341 : 5042375

Escherichia_phage(30.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041311320.1\|5029341_5029635_+	toxin RelE	A0A0P0ZE17	Stx2-converting_phage	4.4e-15	44.4
WP_041312347.1\|5029652_5030045_+	helix-turn-helix domain-containing protein	A0A0P0ZCT8	Stx2-converting_phage	4.4e-18	42.4
WP_013236323.1\|5030131_5030764_-	YitT family protein	NA	NA	NA	NA
WP_013236324.1\|5030756_5031947_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_013236325.1\|5032043_5032394_-	hypothetical protein	NA	NA	NA	NA
WP_013236326.1\|5032424_5033348_+	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	7.0e-06	33.6
WP_041312351.1\|5033618_5034488_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	1.9e-98	69.9
WP_041312352.1\|5034913_5035990_+	CDP-glucose 4,6-dehydratase	A0A0E3FNQ3	Synechococcus_phage	4.3e-07	30.6
WP_013236329.1\|5036044_5037055_+	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	5.0e-82	43.4
WP_013236330.1\|5037069_5038086_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.1e-76	45.0
WP_013236331.1\|5038082_5038628_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.6e-42	49.1
WP_157042308.1\|5038913_5039084_+	hypothetical protein	NA	NA	NA	NA
WP_013236333.1\|5039148_5040147_+	kinase	NA	NA	NA	NA
WP_041312355.1\|5040182_5041136_+	GDP-L-fucose synthase	M1HWW2	Paramecium_bursaria_Chlorella_virus	2.0e-80	45.3
WP_048348634.1\|5041202_5042375_+	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase	A0A0E3G0Y1	Synechococcus_phage	3.3e-61	35.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011930

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection