CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP012332	Gardnerella vaginalis ATCC 14018 = JCM 11026	5 crisprs	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,cas3,WYL,PD-DExK	0	12	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP012332_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP012332_1

177388-177464

Orphan

Consensus_repeat	Method
TTTGTTAGATTTGTCTCGCTCGTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP012332_1

>merge|NZ_AP012332|1|177388-177464|CRISPRCasFinder
TTTGTTAGATTTGTCTCGCTCGTGAGACATTTGTAACGTTTTTTGACTGATTTTCGTTAGATTTGTCTCGCTCGTGA

>NZ_AP012332|1|1|177388-177464|CRISPRCasFinder
TTTGTTAGATTTGTCTCGCTCGTGA	GACATTTGTAACGTTTTTTGACTGATT
TTCGTTAGATTTGTCTCGCTCGTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP012332.1\|WP_009994459.1\|176074_177217_+\|inositol-3-phosphate-synthase	unknown	unknown	gnl\|CDD\|132491
NZ_AP012332.1\|WP_004118165.1\|170676_171729_+\|J-domain-containing-protein	unknown	unknown	gnl\|CDD\|223560
NZ_AP012332.1\|WP_009994457.1\|169696_170467_+\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|184543
NZ_AP012332.1\|WP_004112824.1\|171769_172384_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133394
NZ_AP012332.1\|WP_009994263.1\|189013_191944_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375050
NZ_AP012332.1\|WP_004113806.1\|166003_166825_+\|thiazole-synthase	unknown	unknown	gnl\|CDD\|234687
NZ_AP012332.1\|WP_009994267.1\|193616_194510_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|381175
NZ_AP012332.1\|WP_004112838.1\|165728_165935_+\|sulfur-carrier-protein-ThiS	unknown	unknown	gnl\|CDD\|340451
NZ_AP012332.1\|WP_004113828.1\|177997_179119_+\|PAP2-family-phosphoesterase	unknown	unknown	gnl\|CDD\|239486
NZ_AP012332.1\|WP_009994257.1\|182897_184085_+\|DNA-polymerase-III-subunit-delta'	unknown	unknown	gnl\|CDD\|236134
NZ_AP012332.1\|WP_009994262.1\|185180_186788_+\|C69-family-dipeptidase	unknown	unknown	gnl\|CDD\|335383
NZ_AP012332.1\|WP_004118161.1\|167795_169697_+\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_AP012332.1\|WP_009994256.1\|179289_182148_+\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|236048
NZ_AP012332.1\|WP_004112821.1\|172513_173227_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|319808
NZ_AP012332.1\|WP_004118180.1\|182169_182871_+\|dTMP-kinase	unknown	unknown	gnl\|CDD\|234814
NZ_AP012332.1\|WP_009994458.1\|173588_175940_-\|penicillin-binding-protein	unknown	unknown	gnl\|CDD\|223815
NZ_AP012332.1\|WP_004112767.1\|187000_188518_+\|formate--tetrahydrofolate-ligase	unknown	unknown	gnl\|CDD\|225354
NZ_AP012332.1\|WP_009994261.1\|184420_184972_+\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	unknown	unknown	gnl\|CDD\|176643
NZ_AP012332.1\|WP_004113807.1\|166867_167596_+\|HesA/MoeB/ThiF-family-protein	unknown	unknown	gnl\|CDD\|238386
NZ_AP012332.1\|WP_009994265.1\|192615_193461_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223730

Protein	Function_ID	Function_description	E-value
NZ_AP012332.1\|WP_009994459.1\|176074_177217_+\|inositol-3-phosphate-synthase	gnl\|CDD\|132491	TIGR03450, mycothiol_INO1, inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.	0
NZ_AP012332.1\|WP_004118165.1\|170676_171729_+\|J-domain-containing-protein	gnl\|CDD\|223560	COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones].	5.54938e-75
NZ_AP012332.1\|WP_009994457.1\|169696_170467_+\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|184543	PRK14157, PRK14157, heat shock protein GrpE; Provisional.	5.5572e-88
NZ_AP012332.1\|WP_004112824.1\|171769_172384_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133394	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	1.7221e-31
NZ_AP012332.1\|WP_009994263.1\|189013_191944_+\|hypothetical-protein	gnl\|CDD\|375050	pfam17210, SdrD_B, SdrD B-like domain. This family corresponds to the B-like domain from the SdrD protein. This domain has three calcium binding sites within a greek key beta sandwich fold.	2.23509e-26
NZ_AP012332.1\|WP_004113806.1\|166003_166825_+\|thiazole-synthase	gnl\|CDD\|234687	PRK00208, thiG, thiazole synthase; Reviewed.	7.74829e-130
NZ_AP012332.1\|WP_009994267.1\|193616_194510_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|381175	cd11648, RsmI, Ribosomal RNA small subunit methyltransferase I (RsmI), also known as rRNA (cytidine-2'-O-)-methyltransferase. RsmI is an S-AdoMet (S-adenosyl-L-methionine or SAM)-dependent methyltransferase responsible for the 2'-O-methylation of cytidine 1402 (C1402) at the P site of bacterial 16S rRNA. Another S-AdoMet-dependent methyltransferase, RsmH (not included in this family), is responsible for N4-methylation at C1402. These methylation reactions may occur at a late step during 30S assembly in the cell. The dimethyl modification is believed to be conserved in bacteria, may play a role in fine-tuning the shape and functions of the P-site to increase the translation fidelity, and has been shown for Staphylococcus aureus, to contribute to virulence in host animals by conferring resistance to oxidative stress.	1.41189e-107
NZ_AP012332.1\|WP_004112838.1\|165728_165935_+\|sulfur-carrier-protein-ThiS	gnl\|CDD\|340451	cd00565, Ubl_ThiS, ubiquitin-like (Ubl) domain found in sulfur carrier protein ThiS. ThiS, also termed Thiamine biosynthesis protein (ThiaminS), is a sulfur carrier protein involved in thiamin biosynthesis in prokaryotes. It has the beta-grasp ubiquitin-like (Ubl) fold with low sequence similarity to ubiquitin (Ub), and is activated in an ATP-dependent manner by sulfurtransferases, similar to the activation mechanism of Ub-activating enzyme E1. ThiS has common evolutionary origin with Ub-related protein modifiers in eukaryotes, a beta-grasp fold as Ub, and is closely related to proteins MoaD and Urm1.	6.75463e-18
NZ_AP012332.1\|WP_004113828.1\|177997_179119_+\|PAP2-family-phosphoesterase	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	0.000126197
NZ_AP012332.1\|WP_009994257.1\|182897_184085_+\|DNA-polymerase-III-subunit-delta'	gnl\|CDD\|236134	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated.	4.63221e-134
NZ_AP012332.1\|WP_009994262.1\|185180_186788_+\|C69-family-dipeptidase	gnl\|CDD\|335383	pfam03577, Peptidase_C69, Peptidase family C69.	0
NZ_AP012332.1\|WP_004118161.1\|167795_169697_+\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_AP012332.1\|WP_009994256.1\|179289_182148_+\|type-I-DNA-topoisomerase	gnl\|CDD\|236048	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.	0
NZ_AP012332.1\|WP_004112821.1\|172513_173227_+\|HAD-family-hydrolase	gnl\|CDD\|319808	cd07505, HAD_BPGM-like, beta-phosphoglucomutase-like family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. This family represents the beta-phosphoglucomutase-like family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. Family members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. It belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	9.72996e-34
NZ_AP012332.1\|WP_004118180.1\|182169_182871_+\|dTMP-kinase	gnl\|CDD\|234814	PRK00698, tmk, thymidylate kinase; Validated.	5.78065e-82
NZ_AP012332.1\|WP_009994458.1\|173588_175940_-\|penicillin-binding-protein	gnl\|CDD\|223815	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].	1.27127e-132
NZ_AP012332.1\|WP_004112767.1\|187000_188518_+\|formate--tetrahydrofolate-ligase	gnl\|CDD\|225354	COG2759, MIS1, Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism].	2.99068e-68
NZ_AP012332.1\|WP_009994261.1\|184420_184972_+\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	gnl\|CDD\|176643	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.	6.43327e-27
NZ_AP012332.1\|WP_004113807.1\|166867_167596_+\|HesA/MoeB/ThiF-family-protein	gnl\|CDD\|238386	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). .	1.24526e-95
NZ_AP012332.1\|WP_009994265.1\|192615_193461_-\|alpha/beta-hydrolase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	3.48628e-25

>NZ_AP012332.1|WP_009994459.1|176074_177217_+|inositol-3-phosphate-synthase
MSIRVAIAGVGNCASSLVQGVEYYKNANDGDKIPGLMHAVFGQYRVRDIEFVAAFDVDALKVGHDLSEAIYASQNNTIRFADVPNLGVKVQRGPTYDGLGDYYKQMIEESKEEPVNVAAVLRDLHVDVLVSYLPVGSEQADKAYATAAMEAGCAFVNCLPVFIASDPVWAQKFRDAGVPIIGDDIKSQVGATITHRVMARLFEDRGVRLDRTYQLNVGGNMDFMNMLQRSRLESKKISKTRAVTSIVPHDMDDHNVHIGPSDYVAWLDDRKFAFVRLEGTTFGDVPLSLEYKLEVWDSPNSAGIVIDAVRAAKIALDRKLSGPILAPSSYFMKSPAVQHEDSEARELVERYIAGDVEADESQLNADVEAAKEHGKSVWRA
>NZ_AP012332.1|WP_009994458.1|173588_175940_-|penicillin-binding-protein
MVANSNGQNSHSSNTGRTVRSATSAEEKRRANARTGTARPSATRKPRQRRKHKRIRDTWRTKHPILFWALIIIFTPIILGTLVFAVMYVNTDIPQPDKIAMADKTKVYYADGKTEIGSFAEQNREIISCSALKPYVGNAIVASENRSFYKDGGIDFKGIGRAIIHNITSKGRWGGSTITQQYAERYYLGETKTYLGKLHEAILALKIAQTQDKNTVLCNYMNTIYLGRGAYGIQAAAKAYFGVEAKDLTLSQAAMLAGIIPAPSSWDPAIMPKEANMRFKRVLRIMREDKYITDAEYKSAKMPQTINQTKQNVYSGPQGYLLNMVRSELTQSGAFTKEDLDTGGYRIVTTIDKAKQDLMFSVASPAMGGRGIAPAGLQVGGMSVNPKDGSIISVYAGDDYLSKPLNNATQALYEPGSTMKPFALIGAIQAGTSLNTLFNGNSNLKFEGIDKPVNNYANTNWGTINLYKATANSVNTPFMSLQQKLGRRAVAHTAVTAGLDPKRINGENPFTVLGNDPVHVSEIARAYSTIANQGRRPDIHIVASVKNPDGKEFYRAPTSGRQVFSPADMALTTKALQGVVQYGTSTEARGVGKPIAGKSGTANDETACSFVGFTPSVVTVFAIWYPNAQGNPQPVPSFRGYPGGVGYSAHLFTKYMRHALTGMPTEKFPEAKDNGKIGGEDGKWGLGGNRRTSEYDYSDRASDDKEPYKENKDKVDRTENKPSDSAGAAAGDSSRGSEGSYGSGLGSGESGQAERNSSGAFDSPGSPYGYSGSETQEGAAGGD
>NZ_AP012332.1|WP_004112821.1|172513_173227_+|HAD-family-hydrolase
MAINTTAAQNTTNHKLSAVFWDMDGTLIDSEPYWHDAEIQIAKEHGGEWNEELAWQYSGGSLKDVAEAMIARGTKMGVEEIGNAMVDYVAQKEQIEVPWVPDVLNLLQKLADAGIPSILVSNSPRRLVENIVNHAPKGAFAGYICGDDGYATKPSSEPYLAAGKLLGISAQNMKYCIAIEDSFAGLKSAAASGATTLAQTAYSNLDVSNGPQFADIHGYEDVTPQTLERYIIARIAQ
>NZ_AP012332.1|WP_004112824.1|171769_172384_+|MerR-family-transcriptional-regulator
MVRLERQTKALYEMCAVALVRGSATLDGADEVGFKIDMPIFTVSHVANLTDTHPQTLRQYDRLRLIMPQRTEGGARRYSLRDIDRLVQTQKLSQEDGVNLAGIMRILALQEENRQLKRQVRHLIEEANCAERNIFTATVDGNIVEVQRSQSAKDWRRDIRVQQRALPSSYNKHSHSQNDAQYNNCDYDDLNDDKSVVLWRAFRI
>NZ_AP012332.1|WP_004118165.1|170676_171729_+|J-domain-containing-protein
MAENEWLAKDFYKVLGVSKDADEDTITKAYRKLARKYHPDLNKTKEAEEKFKDVSEAYDVLKDKQTRQRYDAIRQFGAGGARFAGGSGAGGFDASGFSDIFSSMFGGSNGSRVRFSTSGAGPDMGNIFSMFTGGAGAQSSQGFGGSGFNGGAEYGQYGQYGQYGQSAPQNSPERGEDITTSIKLTFKQAFKGATVSLRSGGESFKTHIPAGVKDGQKIRLKSKGKPGKFGGEAGDMYLQVQVEKTDNFSLRGCDLVANLPLTLDEAVRGAKVTLKNLDGKPVVFKVPAGTSSGSEVRVEGEGVPGKNGAFVGIVQIQIPKRSGMMIKRAAKEFNKACGESYEQEVHDLRA
>NZ_AP012332.1|WP_009994457.1|169696_170467_+|nucleotide-exchange-factor-GrpE
MSEFNANDYLSGLEDVPSDAGDLEESSNPADSASAASSNEHVNASQNEAQDAAAHEAKHAATQDTSTQDADANADAEREKSPATDDEANASKSQENNDSSDTQSNEEEDSLTPLGKAKKEAAEYLEALQRERAEFINFRNRASKEQDRFRQHGIIDVLTALLPALDDIDRIREHSDMDDSFKAVAAKLDKAFEKFGVEKFGEKGEEFDPTKHDAILHKPDPDATKDTVDVVVEAGYRIGDRVIRAARVVVASPASS
>NZ_AP012332.1|WP_004118161.1|167795_169697_+|molecular-chaperone-DnaK
MGRAVGIDLGTTNSCIATLEGGSPTVIVNAEGARTTPSVVAFSKSGEILVGEVAKRQAVTNVDRTISSVKRHMGTDWSVEIDGKKWTPQEISAQVLMKLKRDAEAYLGEPVTDAVITCPAYFNDAQRQATKDAGKIAGLNVLRIINEPTAAALAYGLEKGKEDERILVFDLGGGTFDVSLLEIGKDDDGFSTIQVQATNGDNHLGGDDWDQKIIDWLVGEVKNKYGVDLSKDKIALQRLKEAAEQAKKELSSSTSASISMQYLAMTQDGTPVHLDETLTRAHFEEMTSDLLGRCRTPFNNVLSDAGISVSQIDHVVLVGGSTRMPAVKELVKELTGGKEANQSVNPDEVVAVGAAVQSGVIKGDRKDVLLIDVTPLSLGIETKGGIMTKLIERNTAIPTKRSEVFSTAEDNQPSVLIQVYQGEREFARDNKPLGTFELTGIAPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSMTITGGSGLPKDEIDRMVKEAEAHEAEDKKRKEEADTRNQAESFAYQTEKLVNDNKDKLSDEISKEVTEKVNALKEALKGDDIEKIKSAQSELMTSAQKIGQQLYAQQGAAGAAGAQAGAAGAASDANAGAGSSAKDDDVVDAEVVDDDKDDKDNK
>NZ_AP012332.1|WP_004113807.1|166867_167596_+|HesA/MoeB/ThiF-family-protein
MTINKIYDNLQELEAERTCRHLLLPGFTHEHQQLLRDAKICMVGAGGLGSPCLLSLAAAGVGEITICDDDVVELSNLQRQTLYTVDQCGKSKAQLAAKRLQALSPGLKINLVNRFNEDNAKQLVENHDLIIDGCDNFATRFLIADAACSAGTPEVYGSVLYYEGQVSVFVPGKGPTLRDLYACPPPKEKVPKSAVLGATAAIVGAMMATEAIKIITGIGKPLIGVLARYNAIDNSLRHFRFA
>NZ_AP012332.1|WP_004113806.1|166003_166825_+|thiazole-synthase
MTENIENNAEENVDTWQLCGKTLHSRLLLGTGGMTSIDIMEKSLVASGAEVATVALRRHAKTGVDIYGMLQRHNINVLPNTAGCKTAHDAVLTAKMARESLGTDWIKLEVIADDDTLLPDTREVLLAAEKLVEEGFSVLCYTNDDPIVARRLVSLGVKAVMPGGAPIGTGLGILNPRNIELIVQESKESGVPVILDAGVGTASDVVKAFEIGCSGVLLASAVTRCPDPVKMGRAMAAAVTAGKLAHDAGRIPKREHALASSPVEGRAWADAVL
>NZ_AP012332.1|WP_004112838.1|165728_165935_+|sulfur-carrier-protein-ThiS
MQIVVNGETAQVKDNLTIAQLVAQLYGSDSGFGIAVAIGDDVLKRAQWESTIICDGDKIEILSAVQGG
>NZ_AP012332.1|WP_004113828.1|177997_179119_+|PAP2-family-phosphoesterase
MLGMSLFEGSKISDGSDDSDNSQISGIGENIKNSQNSQSSEANQDISKLDPLMNRPRISTIALCALCAVLFASFASIMWILAVRTAIGQSYEEMVISTFGYSAIPSWLSVVLTPLRSSILVIVLSALICAAAAIISIIRKRWWLIAQCAVILVLSLAAEPLKRVLPRPILVNVATLAKNSAPSGHMLLMAAACALLVCAVSRAFRAWVALGSAIITFLLAIALLGGRWHRPADVMISVLIVGAVTSTVLIFTRSSGMDVPGSRRSSISVQIVGSAMITMGIICLTYCSYMIYQIMPGIDLGAKWAIGVSHSCAYWAVAGVCSLTFGVLMVLRQSSAAPLSRLGLVGAPPTPPSKSEVPKRQDEDDLLLRLSSN
>NZ_AP012332.1|WP_009994256.1|179289_182148_+|type-I-DNA-topoisomerase
MTEQNKLVIVESPTKARKIGGYLGNGYTVMASVGHIRDLAQPSQVPAAKKAEFGKFGVDVNNGFEPYYVVGADKKKTVSDLKAALAKSGELFLATDEDREGEAIAWHLVQALKPKVPVKRMVFHEITKDAIQASLANTRNVDDHMVDAQETRRVLDRLYGYELSPVLWRKVGPGLSAGRVQSVATRLIVERERERMAFKKASYWDVCADLSANGVDFQARMMALNGERLAASKDFNSLGELQKTKGESALAHYLNEADSCSIAQSLGAADFVVSSMDTKPYRRRPLPPFTTSTLQQTAGNRLSMSSRQTMRAAQSLYENGYITYMRTDSVTLSKEAIFAARDCVKSSFGDEYLADSPKQYATTSAGAQEAHECIRPAGSTFRNPADLAGVLPADQLKLYTLIWQRTLASQMADATGFTATVKLDASAGSFGTANFQASGTVIEFAGFMKVFGGFSEDEQSKALPPMANGDVLKALRVSADGHETQPPARYTEASLVKTLEAKEIGRPSTYASIISTIIDRGYVYERGRALIPSWLAFAVIKLLESNFPTYVDYAFTADMENGLDRIAHGEEAGKDWLYKFYFGDNGAVAGDFAMHEGLQKQVDQLGEIDAREINTIDIGGGLHVRVGRYGPYLEDTKNLDEEGNARRASIPSTLAPDELTEQVARDLIENNSDGPRVLGTDPQTGGSVEVRNGRFGAYVALVEASDEDGSQASDDSAKTGAKSSSKSKKSAKAKPKMASLFKTMDPATITLQDALRLLNLPRLVGVVEEVDEQGEVKRAKIEANNGRYGPYLTKTYERADAGDSAASADAKPDNRSLASEDAIFSVTLDEAKELFAQPKYAKRTRGAAKPPLRELGEDPESGKAVVIKDGFYGAYITDGVTNRTLPKQYTPESIEPQVAFELLAQKRAAGPVKRKRTAAKKTATKKTATKKTAAKKPAAKKSTAKKSTSKGE
>NZ_AP012332.1|WP_004118180.1|182169_182871_+|dTMP-kinase
MAIGLKNSGLSGLNKGLFISFEGIDGVGKTTQVEALRDFLQARGLEVVVTREPGGTPLGEQLRNILLHGGAISARTEALLFAADRAQHAAQIIIPALRRGAVVITDRYIDSSLAYQSGGRELTMQDVRDLSEWASNCLWPNRTYLLDMSEKDAAVRLHGQADRMESAGLDFARRTREAFLDLAKQNAQRFCVLDATLPACDLSKLIAKDMCELMDNAGIGDKKSPEAPENQGF
>NZ_AP012332.1|WP_009994257.1|182897_184085_+|DNA-polymerase-III-subunit-delta'
MDVWESVVGQAQVVERLKKVAQGDSSKIAQSWLICGSTGFGCAKVARAFAAALQSSGKIASNRAAENSATQINTQINTDKIASEVLAGTSPDVNILSTDKVTVSIDEVRELVSISEQMPSVAPWRIIIIEDVGRMLERTTNVLLKEIEEPAPRTIWILCAASAADVLPTIRSRSQIVNLVQPSDQDVQEYVQKCSNVDAKTAESVARIAQGNVDLAMLYATSERARSGREELVASVLRISSAIDAIMLAQTLIEDAKAQAEEEVQKSVEEEQSEFLRINGIKPTDKIPPKIRSAYNAIGKKDDVKRKVTRVSRDVLNRAIDAICSVYRDVLVVLNNAQLQTPLVNQEFKAEIIQLSKKITAERALKCLDALSVAKKRLAGNGNATLVFEALFCKL
>NZ_AP012332.1|WP_009994261.1|184420_184972_+|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein
MNISADFTTIPDNFAKAAPEENKINGVPVVSFPFYVDKLPDFVHYLHWRFVDDDAIPVCGFQWIHWVVANVPVEALMFDFNDSRALQIPQDFSRTMPTMIPEVVQGRNSQASRFVGCTDPAITMRYNGPQPPDKDHDYMLEVFGTQKPLANLKEGFYLNEMMNEIRHYDSYVDVNGLYLRGKA
>NZ_AP012332.1|WP_009994262.1|185180_186788_+|C69-family-dipeptidase
MACTTILVGRKASYDGSTLIARNEDSANGEFNPKRLVVVKPQDQPRVYKSVLSHVTVELPDNPMQYTSVPNADLREGIWGEAGVNEANVAMSATETLTSNERVLGADPMVELQKAQGKEGDADYKPEVPGGIGEEDFLTLVLPYIRSAREGVERLGALLEKYGTYEMNGVAFSDVNEIWWMETVGGHHWIAKRVPDEAYVVMPNQLGIDEFDLEDALGDQEEHMCSADLLEFIEENHLDLSVENASPFNPRDAFGSHSDADHVYNTPRAWFMERFLNPYDEVWDGKDADHKPDSNDIPWARQPERKVTVEDVKYVLSSHYQGTEYDPYDKLGDEHTRHLFRPIGINRQSQLAVMQIRPYVPEAFRTIQWMAYGSNPFNALVPFYPNVNETPKYLEDTTTRVTSENFYWENRIIAALADAAFNDTANAIERYQEVVGSLGHAMVKSTDAAAADLLGVSLKDYEPEREGNEGEDYDDLVRDPEAIIAELRNDKVREALAEANDDMAAKLKKETDSLLDTVLYITSMRMKNGFNRSDH
>NZ_AP012332.1|WP_004112767.1|187000_188518_+|formate--tetrahydrofolate-ligase
MSILDSFTTQFGLVKKIDAFGFMDYLKKNPSEQKKHGKVLLVTADTPLKASRGEGKTTTTIALVDALRERGVDAAAVLRQPSMGITAAGSKGGASGGGKSSLSHPELIDWGLCGEMAAIECAQNLLVSFAEKAIDEGILDTILVPRVSEVPSRSLRSIAVDFGKSTVAERVVLTPTCELMQIVVLSRSMEEIANRVAAMIAGTKDGNPVKFGDFVDLWRITNILADAVKPAKTETINGSPIYVHCGPFANVSLGIPSLVSVEMACALHDVVVVEAGYGTDAGAQKWLDIAAREFGAKWPAAAVVVTRATTWRDDETLAWRYPFHVSRLESLDIPTFPLINLWEGEDGQVPDLLEQAKTLGFRKPIVGNLFRDGGDGLADQLDDFVSVITADAETKVPESRRGKSLRERINLLCSEAYGVPAERVIDKAGFADSLKEAQDLCNKAGVDFDSLALVAVKSPATMTDDDHAPEDSRTVTLKKVEVHAGAGVVQVNLTSSLTTPMPKIV
>NZ_AP012332.1|WP_009994263.1|189013_191944_+|hypothetical-protein
MKMKIVTASLLTATLLTASLSSSALAQSSNDNAFTNRENIPTNKSSINNIDLIPAPTQHFGKPDGKLPEVRTSISYVDGDSTDNHADTNKTNKILRPGSKLTLRATAKFIVPEAGDVFRPYLRLAIPKILTVNANDFVVDAGSVANKVVQISDSKSFDNHNLGNYNLFDVYFNYNEWSSDFANEMPYLAAIKGVNHSGNVLSNGDVVKNNQTVSIEIPTVVDSNANTSDLVDLQNYKKGVKPLIQGRVSYMPFPTPIEYTSTIGGLKDFPNDKILQDNPCLVRSDLVTGWDGRDDYGFWFTGLSMETSGVDYDSRSTMVESQNGVWLPQLIPANIEHNQFVTIYRNGNDNNPIKLRFKIPFGSKDYTLNGTKQALKNHHLTVFRSPNNNAEARKIMGNIGIEKVAYENTEVFGDILDSKYFDGWGTVPEQSRPSELLISGEFNPDSTVFGPDNISNGIWMSGKASASIKSYYRALDCNDNYPDSTLKYPPIINKIQETVATYARSNRSKVSTVPIEIVIPASLSGRVWFDANHNGIQDKGESSIIGAKVQLVKQYGDSTVIDINGNEVKPITTTSPDGYYEFTNLLPGSYVVKFTLPEGSEYFGFTYTHKGSDSSVDSDAIPGEPVTDRSVIENVSSETDNSTSKNSYVGNISLSAGEDKKHIDAGAFKKDEPKDPKPNTEPKNPQPKHEDPKDPKQNPNPKDPKKDKPKSKDPKPKDPNPEKDKPKDPDNKPKQNPEPKKTDPKDYNPVKPDTPKSPDPKKDDPKPKDKPNNPNYQDRDVPDTKPEDPKKPDNPTKPKDDKSDTPKEPESKEPKDPKPNDEPKKDEPEDPDPKDTNPKSENPKDNENPKNPESKPDDPKSDTPKDPDTDDTESNDPPQYEDSQPKEDSSGPNHSEIRESDNPIPNINNDLDSNNSQSNESSFDNNNADFKQEHVRDKLVNTGVSTVFTAVASVAMLALGATNKIKSYFCKGKHRQ
>NZ_AP012332.1|WP_009994265.1|192615_193461_-|alpha/beta-hydrolase
MKIIERQIKGIDGSNALLTGYVLDDNLDSEGDQTRPAVLILPGGGFLRVSNREAEPVAMKFAAAGFHAFVLRYSLVPSAHPTQLLEAAQAMQLIRNNAKEWHVDAQKVAIIGFSAGGHVAANLATSVSDDVEETNGYNANDVRPNALMLAYPVISAGEYAHKPTFDRLFGSVDSNTRAQLVEQLSLENHVDSKTPPVFVWQTITDQTVPVQNSIMFINACVKAGVSVEAHLFPKGPHGLALAVKETAKRDENGAVIPEFVQPEVQQWIDLACDWLRRTFAC
>NZ_AP012332.1|WP_009994267.1|193616_194510_+|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MRNEEDNLGKVVLAATPIGNMGDASSRLINLLETADIVAAEDTRRLYDLANRLGVHVSGQVIAYHDHNEHNKADGLLDKVEQGNTVLVVSDAGMPTINDPGLAIVRRAIERDLPVTCAPGPSAVLDALALSGLPTDRFCYEGFLPRKSGDRQQHLRSLLSERRTIVFYEAPHRIAESMEDLLAVFGADRKMALCRELTKDFEEIRRGTISQICKSVENDPPRGEIVLVIAGASDEEIKQRNIDLSVEQLAQMSYDLSQNEGLRIKDAITRIVSQNPLSDGSFANRKEVYAACLNIKS

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Crispr_ID: NZ_AP012332_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP012332_2

279088-279225

Orphan

Consensus_repeat	Method
CCTCGTCAGGGCGGCGGTAATGGC	PILER-CR

2 spacers

The CRISPR arrays of NZ_AP012332_2

>merge|NZ_AP012332|2|279088-279225|PILER-CR
CCTGGTCAGGGCGGCGGTAATGGCAACGGCGGTGGTCGCGGTCGCGGTGGTCGCGGAGGCGCTCGTCAGGGCGGCGGTAATGGTTCGAACCGCTCTTCGCAGTGGTCTGGTTCACATCGTCAGGGCGGCGGTAATGGC

>NZ_AP012332|2|1|279088-279225|PILER-CR
CCTGGTCAGGGCGGCGGTAATGGC	AACGGCGGTGGTCGCGGTCGCGGTGGTCGCGGAGGC
GCTCGTCAGGGCGGCGGTAATGGT	TCGAACCGCTCTTCGCAGTGGTCTGGTTCA
CATCGTCAGGGCGGCGGTAATGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP012332.1\|WP_004111995.1\|291417_292197_+\|phosphate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|184587
NZ_AP012332.1\|WP_004115940.1\|271732_272404_+\|pyroglutamyl-peptidase-I	unknown	unknown	gnl\|CDD\|238279
NZ_AP012332.1\|WP_009994443.1\|275864_276818_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP012332.1\|WP_004118354.1\|274083_275418_+\|C1-family-peptidase	unknown	unknown	gnl\|CDD\|238328
NZ_AP012332.1\|WP_009993784.1\|288133_289315_+\|phosphate-ABC-transporter-substrate-binding-protein-PstS	unknown	unknown	gnl\|CDD\|270283
NZ_AP012332.1\|WP_004575086.1\|270735_271701_+\|laccase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376831
NZ_AP012332.1\|WP_042711159.1\|289421_290384_+\|phosphate-ABC-transporter-permease-subunit-PstC	unknown	unknown	gnl\|CDD\|273992
NZ_AP012332.1\|WP_162861258.1\|284835_285900_+\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|236435
NZ_AP012332.1\|WP_004111973.1\|277039_278089_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|237061
NZ_AP012332.1\|WP_009994439.1\|265422_266103_+\|VTT-domain-containing-protein	unknown	unknown	gnl\|CDD\|182775
NZ_AP012332.1\|WP_004111993.1\|290380_291388_+\|phosphate-ABC-transporter-permease-PstA	unknown	unknown	gnl\|CDD\|273373
NZ_AP012332.1\|WP_004111957.1\|266248_266518_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_AP012332.1\|WP_048653116.1\|266952_269697_+\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|131743
NZ_AP012332.1\|WP_004111987.1\|287148_287850_+\|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase	unknown	unknown	gnl\|CDD\|350159
NZ_AP012332.1\|WP_004115945.1\|269823_270681_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381314
NZ_AP012332.1\|WP_009993787.1\|286663_287140_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP012332.1\|WP_009993790.1\|283189_284527_+\|bifunctional-riboflavin-kinase/FMN-adenylyltransferase	unknown	unknown	gnl\|CDD\|235536
NZ_AP012332.1\|WP_004111977.1\|281279_281861_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_AP012332.1\|WP_004111967.1\|272513_273905_+\|cell-division-protein	unknown	unknown	gnl\|CDD\|274008
NZ_AP012332.1\|WP_013399447.1\|281897_283100_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235113

Protein	Function_ID	Function_description	E-value
NZ_AP012332.1\|WP_004111995.1\|291417_292197_+\|phosphate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|184587	PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional.	0
NZ_AP012332.1\|WP_004115940.1\|271732_272404_+\|pyroglutamyl-peptidase-I	gnl\|CDD\|238279	cd00501, Peptidase_C15, Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.	7.31532e-48
NZ_AP012332.1\|WP_042711159.1\|289421_290384_+\|phosphate-ABC-transporter-permease-subunit-PstC	gnl\|CDD\|273992	TIGR02138, phosphate_transport_system_permease_protein_PstC, phosphate ABC transporter, permease protein PstC. The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions].	1.51639e-83
NZ_AP012332.1\|WP_004118354.1\|274083_275418_+\|C1-family-peptidase	gnl\|CDD\|238328	cd00585, Peptidase_C1B, Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure with the active sites imbedded in the central channel. The bacterial homolog of BH, called pepC, is a cysteine aminopeptidase possessing broad specificity. Although its crystal structure has not been solved, biochemical analysis shows that pepC also forms a hexamer. .	0
NZ_AP012332.1\|WP_009993784.1\|288133_289315_+\|phosphate-ABC-transporter-substrate-binding-protein-PstS	gnl\|CDD\|270283	cd13565, PBP2_PstS, Substrate binding domain of ABC-type phosphate transporter, a member of the type 2 periplasmic-binding fold superfamily. This subfamily contians phosphate binding domain found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.79744e-64
NZ_AP012332.1\|WP_004575086.1\|270735_271701_+\|laccase-domain-containing-protein	gnl\|CDD\|376831	pfam02578, Cu-oxidase_4, Multi-copper polyphenol oxidoreductase laccase. Laccases are multi-copper oxidoreductases able to oxidize a wide variety of phenolic and non-phenolic compounds and are widely distributed among both prokaryotes and eukaryotes. There are two main active catalytic sites with conserved histidines that are capable of binding four copper atoms.	4.03475e-55
NZ_AP012332.1\|WP_162861258.1\|284835_285900_+\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|236435	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated.	0
NZ_AP012332.1\|WP_004111973.1\|277039_278089_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	4.26999e-150
NZ_AP012332.1\|WP_009994439.1\|265422_266103_+\|VTT-domain-containing-protein	gnl\|CDD\|182775	PRK10847, PRK10847, DedA family protein.	1.11815e-47
NZ_AP012332.1\|WP_004111993.1\|290380_291388_+\|phosphate-ABC-transporter-permease-PstA	gnl\|CDD\|273373	TIGR00974, 3a0107s02c, phosphate ABC transporter, permease protein PstA. This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions].	1.44785e-95
NZ_AP012332.1\|WP_004111957.1\|266248_266518_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	2.32135e-53
NZ_AP012332.1\|WP_048653116.1\|266952_269697_+\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|131743	TIGR02696, polyribonucleotide_nucleotidyltransferase, guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.	0
NZ_AP012332.1\|WP_004111987.1\|287148_287850_+\|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase	gnl\|CDD\|350159	cd09008, MTAN, 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidases. This subfamily includes both bacterial and plant 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidases (MTANs): bacterial MTANs show comparable efficiency in hydrolyzing MTA and SAH, while plant enzymes are highly specific for MTA and are unable to metabolize SAH or show significantly reduced activity towards SAH. MTAN is involved in methionine and S-adenosyl-methionine recycling, polyamine biosynthesis, and bacterial quorum sensing. This subfamily belongs to the nucleoside phosphorylase-I (NP-I) family, whose members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	2.20425e-68
NZ_AP012332.1\|WP_004115945.1\|269823_270681_+\|aldo/keto-reductase	gnl\|CDD\|381314	cd19088, AKR_AKR13B1, AKR13B family of aldo-keto reductase (AKR). Xylella fastidiosa phenylacetaldehyde dehydrogenase is a founding member of aldo-keto reductase family 13 member B1 (AKR13B1). phenylacetaldehyde dehydrogenase (EC 1.2.1.39) catalyzes the NAD+-dependent oxidation of phenylactealdehyde to phenylacetic acid.	2.20681e-97
NZ_AP012332.1\|WP_009993790.1\|283189_284527_+\|bifunctional-riboflavin-kinase/FMN-adenylyltransferase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	9.90866e-68
NZ_AP012332.1\|WP_004111977.1\|281279_281861_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	1.53674e-38
NZ_AP012332.1\|WP_004111967.1\|272513_273905_+\|cell-division-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	4.18534e-05
NZ_AP012332.1\|WP_013399447.1\|281897_283100_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235113	PRK03287, truB, tRNA pseudouridine synthase B; Provisional.	1.77858e-101

>NZ_AP012332.1|WP_004111973.1|277039_278089_+|transcription-termination/antitermination-protein-NusA
MELDLAGMHQLAAQQGINAEELDEALAEALRLAYMKTSHPARHARVELDERAGSFTVWAKDEIPGVPTEDNPHPAPTLGEEYDDTPRDFGRLAAATARQVITQLFRKVEDDRVFGAFSGQKGKLINGVVQQDSKDPSNIHVAVGDVEAILPRREQVPGERYRHGERIRVYVVNVARGLRGPEIVVSRSHPDLVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTEGVNPKGALIGPGGSRVRAVMENLGPEKIDIVDWSEDPAKFVAAALSPATATQVHVVSEKSQTAVAFIHDSQLSLAIGKEGQNARLAAKLTGWKIGIESAEEHAKKQEEMNADSKVSAE
>NZ_AP012332.1|WP_009994443.1|275864_276818_-|hypothetical-protein
MQTQFVLLRSLLERTKHNQKRNQKHTQNHLLIVAALMTITMLFSACSSTKELKNNNLHSLQNHEPCYKIMQKAKSIQEKVDKKINNLTSKDLKNASDTWKKVAVQCNSRFAQGVVFSAQNIWKLANLNQTGNAETIKLAEQLELNSYKKIQDFADNNKNLYWNHDPLAKAAVAQDKLAFLLQTLAARDAKNVSLRQSDMTATISNTLMHFASSGSDLRQKVYEIPKQNLESGIAKDNATGKELPIVAIAYMDCAREELDALNQTIFPINKDGKINNDAIVSIENQDFIGVLADIVVSHIISAYSNGYPTDDSAIFEQ
>NZ_AP012332.1|WP_004118354.1|274083_275418_+|C1-family-peptidase
MTEISELSAEALQGLRDDFDANPLNRLAMNGVTAAGIDKVARNYDRARLLQRRFSTVVDNGDARHQDHSGRCWLFSSLNVARFVAKKTLKVKDFEFSQNYAMYFDKLERINYFLKDVAALVRSGEPADSRLVQHLLHDVMGDGGQWTMAMNVYKKYGAVPKDLYPETESSKDTDAMNTQLRRLLRTAVAHMYANAADIDDIIAETTAAGHRILTIHLGEPPKSFDWEWTDEDGKFHRDGEITPVEFWKKYVTAGLEDYVCLVDDPRAEHPKGKKIAIEHLGNVAGGDATEYLNVPNQFMKDCVRKILVEQGIPVWFGADCHPMMDRVNGAWATDLFEYDRVYGVDFDLNKEQRVRFADSAMNHAMAFAGVDVAEDGTTTRRWRVENSWGADIADKGYFTMSDDWFTEYVYEVAVPKALLPEEYRKALEEPAIVLPAWDPMGALA
>NZ_AP012332.1|WP_004111967.1|272513_273905_+|cell-division-protein
MVPDRFPTALRGYDKDKVNEAFSNYERTISRLREQVRSSDESILQLQAQLQEEKNNVKRAKSGNTFASLGANAQQLLASAEQTSSQLIERAKQDAASIKKTAQAQAGTLLNNAKLDAEHLLQEAQTKADTLLSTASNKASQMTSAAKEDSQRLRETTNKDVTAQRDAATLEINNAREEHTKRMASEKSEQERAIAQLKADAAQKIAEQRSAANAEIAHAKAETNDQIESALAEANKKLADMQERATKMMADAQRKAGEITDAAAAKAQEIADEAQVERTRTLSQVSAEVEQIRNDIAAQQEEATKKVNELISGLKEREHAAQEEADALVARAKTIHQDADNYAAQAHKDADAQAAQIVRKAMQDATAQVEERRAAAQQELDGMTARLTQLQHREAQITQRVTELRSLFANAFSGFDFGDAVSGQGHSGDSADADASDNSDADAQKQARKDAQAQVEEAIAQES
>NZ_AP012332.1|WP_004115940.1|271732_272404_+|pyroglutamyl-peptidase-I
MKQINVVISGFGPYADLSVNPSYEVPLALEQYSSQELDLPEDVRVNIKSVMLPISFANAWPQLLEMINAQDADIVIATGVKHTARGVQLERCATNIMDATKPDVDNHTPQSVQIVENGPSAYWTRLPLRMILNDFAHDAIASTLSSDAGTYVCNSLFYRLLNWASNNSKKQIIAGFVSFPPVVATHDARHGLPLDSQIKAGQNIIREAVKYYMKPSSLSILLE
>NZ_AP012332.1|WP_004575086.1|270735_271701_+|laccase-domain-containing-protein
MQETSVAGMPLAHEDAHGLPIPVTIPVPLGSRAHAVFTTRLGGISEGDFASLNLGGKAGDDAKAVFSNRCALQNTLKADLCLVSQVHGNNVFDADSIVDSWNTQYGFDATGFADSKVRIEADAQVSTACSLALGMFAADCLPVLLADSESGVIAAAHCGRKGLMAGVLDSTIEAMCEKGAECSNITAVLGPCICGDCYEVGEEIASDFERRYPQTATQTRFGGVGIDIAEAARIDLALAGVANVVDALPRVTAATQYLAEDEELSTVCDVDCEGGTLKSRLQALQNPMCTLENPLWYSHRRAGLAGKSHEGRLLALIVKDK
>NZ_AP012332.1|WP_004115945.1|269823_270681_+|aldo/keto-reductase
MDRILGSFKTTSIGFGEMPLTIENNLGHDMGIETIHAALDAGCTHIDTAWAYYCSGGEEQTGEKLVREALESWNGDKSSILVATKVGHFRNFTDGRPTWGKDGKPEHLIAHAKESAMALGVDTIDLLYFHRPDPEVPYNESIEAMQQLLDEGVAREIGISNASVEQIDIARGILGEKLVAVQNQYSPVHLENEDTLQYCKQLGIAFVCWSPLGGFRHPYDEHLFDPFRKVADAHKVSYQQVVLAWELAKGNNVFVIPGAHRPATILDSLKAADLQLSDEELAYLG
>NZ_AP012332.1|WP_048653116.1|266952_269697_+|polyribonucleotide-nucleotidyltransferase
MEGPEIKAVEAVIDNGSFGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDVEEKMYAAGKIPGSFFRREGRPSNEATLACRIIDRPLRPLFPHTLRNEVQVVETILAINPDDAYDVIALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRVIENGDVAIAMIEAGAGKNAWNLIYNEGQIKPDEEVVAGGLEAAKPFIKVICDAQNELKRIAAKETKEFQLFPEYTDELYARIDEIAHADLNEALSIAEKLPRQDRIAEIKEGVRAAIAEEFTDMDDEEKEKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQVDALSGPQTKRYMHNYEMPPYSTGETGRVGSPKRREIGHGALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLKAPVAGIAMGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGIPADILAAALQQAHEARATILEVINECIDCPAEMSPFAPRIITTTIPVDKIGEVIGPKGKMINQIQEETGAEIAIEDDGTVYISSEGGEAAQKAKEIIDSIANPRIPKAGETFTGKVVKTTSFGAFVNLTPGSDRLLHISQIRNLANGERIDTVEDVLKEGDNVEVIVQSVDERGKISLAIPGFENQESSAPAPRENRGRAPREDRDDRDDRRSDRRRAPRDDRDDRGDRDERPRRRNVRDDRDSRYDDRNDRNDRSDRSDRYEDRSSRRDDRRDNRYDNNDFEDRPRRRAPREDRYDDRDDRRDNRDDRHEDRSAHRNADRRGNDRNPRYAADDDHYDEYRASREERSERPRRRIRRDFDPFDED
>NZ_AP012332.1|WP_004111957.1|266248_266518_+|30S-ribosomal-protein-S15
MALTAEDKKSIINEYATHEGDTGSPEVQVALLSKRIADLTDHLKEHKHDHHSRRGMMLMIGDRRRLLDYLKRVDINRYRSLIDRLGLRR
>NZ_AP012332.1|WP_009994439.1|265422_266103_+|VTT-domain-containing-protein
MGFIHFILNLLKDPRSAIAGWIAIGTAPALGLIFLIVFIETGVVFFPFLPGDSLLFAAGFFAAPDSQTGKSSLPLMLLLAVVWIAPIVGDQCNYFIGHFFGRRIVESGKVKALTPERVAKTEKMIDKWGPLAVFLGRFFPFIRTFMPFISGISGMRWTRFTPFSILGGVVWSSLFTMLGYFFGNIPFVQKNFELVIVAILLISLVPTFIGLYKAHAANKAKKCLEK
>NZ_AP012332.1|WP_004111977.1|281279_281861_+|30S-ribosome-binding-factor-RbfA
MAGTNPRAARIAALIHRVIASNMEAHLHDKRLANVTITEVRVTNDLQIAKVYWTQLGTVGKEQGERQRAAQALQQAKGRLRTLVGAKAGLRLTPQIQFVYDEVPSEAHEIEDILVAARKRDEELAKARENARYAGEEDPYKKPREDEDFDDSDDSDDFDDSDEYEDYENSENDFVEDKSPATDDLDDSAHLEL
>NZ_AP012332.1|WP_013399447.1|281897_283100_+|tRNA-pseudouridine(55)-synthase-TruB
MSSSQTSSSGILLVDKPKGVTSHDVVSCARGLLHTKRVGHAGTLDPMATGLLILGFGNATRLLNYLLGHDKTYEAVIRLGESTNTDDADGDVVSSVDDENSILNSANTDEILKELRCVIAKNFTGHIMQTPTAFSAIKINGVRAYDLAREGKDVHLEPREVVIHDFSLLDARFNVGVSGAKVVDVRASISCSSGTYIRALARDLGRVLGVGGHLVSLRRTRIGEFSVEDDRVLKLETRIRTFTDKNGVTQTRAKAVVADRHDSVSDYFSDSVSNSSVACDLSGDSSCKKSAQKNYDLQNRVLSMFESAKLTMQTVEISENQAKDLRFGRKIVIPAISEKNTIAYVKAEKDEQNDVVAVLETAEKSPATAGGSRAFSKLQEKNEKNINQIEAKPIVVFVQS
>NZ_AP012332.1|WP_009993790.1|283189_284527_+|bifunctional-riboflavin-kinase/FMN-adenylyltransferase
MKVINIRPDANGMINWPTLSAQRKAIVTIGVFDGMHLGHRKVIERTVDLARKNNAFSVVIMFDPRPSVVHENPDLFDDFGDNAQIPVDSQALTSVRQRLRVLQQLDVDHVIIVRYSLAFAAKSYRFFLGQLVGKLGMRALVLGSDAALGARRAGNVHAIKELAQATGVFDLVVVDDFGPGDVRVPDPIVPEVPSEDGEPKDPADGMNKAEYRAWSKGMPNKKVRAWSSTNVRWMLANGRVRDARDVLGQPHRVEGIVVHGAERGREIGFPTVNLGERIDGYVPVDGVYAGWIVDLDADEASADNLHSSNIPSVGVLRKDELHLGVHSPWRWAAAISIGTKPTFAESNEGSSVKNVVSGDSGDIFESDSISDFGADSSTYPNDSENRVVEAYALTDKWQDLYGHRICIEFAQFLRPQHAFDSVETLKDAVRHDVEKVREITDAENR
>NZ_AP012332.1|WP_162861258.1|284835_285900_+|3-deoxy-7-phosphoheptulonate-synthase
MINRRVLELEPLPTPAQVLGELPLSPYAQDIVAESRDEIRRCLNGDDDRLLVIVGPCSVHDPKAALDYASRLADLRAKLEGELLIVMRVYFEKPRTTVGWKGLINDPDIDGTHDIHKGLLLARRTLLGVLDAGLAAATEFLEPTSPQFIADAVSWGAIGARNTESQIHRQLASGLSMPVGFKNATDGSVTAAVNGCLAASQHHTFFGIDHLGRACAVQTLGNPDCHVVLRGSSKGPNYDAASVAAAVASVRLRLGADCVASNGVVIDCSHGNSGKDENRQIQVVRDIADRLAHGEKGIKGVMMESFLQGGNQDPAPLSELEYGKSITDRCISWEDTERLLNTLAQSVSSRRIKS
>NZ_AP012332.1|WP_009993787.1|286663_287140_+|hypothetical-protein
MCESPAPDRNNLHQDKNVSSRALTIARYAIFALLLAGAFLLAFAWYRGTHSKGYTVVTCSALWLSVIVPFITLIVLCVFVRGCRLVVGSTICVLLIASFFVFIAFHDSIMGFLNVPSTNPWFEFTCSALLKIATASFVIMCCVSVFLIKRNSMHKIKG
>NZ_AP012332.1|WP_004111987.1|287148_287850_+|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase
MPKFTKIAIIGAMEEEVTHIAGSLSNVKHNKAASLDVSCGVLECEDGGKIEVAATVGGMGLVNAAATAQYLIDTYKPQAVIFSGIAGNLNKNLHTNDVVLGKTLKYLDTDMRMINQWKPFTNEYHSDDYLLKTADSVLTKMGINHILGTIASGGYFVDTPEKVAEVIEATQADAVEMEGAAILHVAARNDVPALVVRAMSDNADTKYEEFHTFDISEYADTAAKMTVNIVRNL
>NZ_AP012332.1|WP_009993784.1|288133_289315_+|phosphate-ABC-transporter-substrate-binding-protein-PstS
MRKNAVKNNAVKNKSIKLNTNLNIRAITAGLLASATLVSFAACGDNVPASNSQSSANTSAKIVGNFQGSGASSQQVAVEAWIAGFQSKNPGAKIAYNPTGSGAGVTTFMTGATAWAGSDKSLSDDELEKSKSVCANGTTAFDVPVYVSPIAVIFNLKGISDAGKHINMDASTIAKIFDGKITRWNDDAIKSQNPKLKLPDKPITVVHRSDKSGTTQNFLSYIKDVAPSDWSYNLSENWPNSVGQGAKGTSGVVSTIRMADGAIGYADFSQVGKLGTVAVKVGDSYNEISPEGGSITINDSKVDEDAAAKSKHRVVVKINHKTEEKGAYPIVLVSYDIVCGAYKDAATARFAKSWLSYVTSKDGQAAAQGAAGTAPLPEKLMGRINKSIQSIGK
>NZ_AP012332.1|WP_042711159.1|289421_290384_+|phosphate-ABC-transporter-permease-subunit-PstC
MSKDAHKSGHFAGGFAGGFADRLFKSVALLCGLLILMVLTAVALFLLFQALPIVGANKSQVSQVFLDFTGGKAHDFLSYVAPMVFGTVLMSALALLLAFFVSIGIALFISHYAPPKMVPLLSGVVDLLAAIPSVIYGLWGGLVLVPSIYPFWKFISHIFGWIPLFAGPAASPSRSAATVSVVLAVMILPIITSMARDIFQQAPRLQQEGALALGATKWEMIKLAVLPFAKSGIVSASMLGLGRALGETMAVLMILSPGFTFKFNILQASQNQTIAANIAAQYPEANGLGVSALIATGLVLFVISFAVNLIARKITGKASA
>NZ_AP012332.1|WP_004111993.1|290380_291388_+|phosphate-ABC-transporter-permease-PstA
MMQNSESLQAGSVSASSESPKIDFNKFRPTRSRIASRKRKDAFMRVLIFLSFVVALIPLLSLLFTTIVNGIKRLNLDFLTHNMTYVVGGAATGTGGYGGILHAIIGTLEITFGAMLISIPIGIMCSVYLIEYARGSRLATLINLVVDVMSGIPSIVAGLFAFSSFTIFVGPGTINGFEGSVALSLLMLPTVVKSCQEMLKIVPNDLREAALALGVTKQRMITKIVLRTALPGIVSGCILAVARVVGETAPLLMAAGFIASTNFNLFDGQMTTLPVYVYQEYSKLSANCPANAPSSCVTTIPMERAWAAALALIVIVLLLNIVGRVVARVFSVKAK
>NZ_AP012332.1|WP_004111995.1|291417_292197_+|phosphate-ABC-transporter-ATP-binding-protein
MGQRIDVKHLNIYYGDFLAVEDVNISIEPNKVTAFIGPSGCGKSTVLRTLDRMHEITPGARVEGQVLLEGRDLYGKDVDPVAVRRDVGMVFQRPNPFPTMSIRENVLAGVRLNNRHISKQDADDLVEWALRGANLWNEVKDRLDKPGIGLSGGQQQRLCIARAVAVHPQVLLMDEPCSALDPISTLAVEDLINELKRDYTIVIVTHNMQQAARVADYTAFFNLKAVGKPGHLEYFADTTTMFNNPRNTEAERYISGRFG

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Crispr_ID: NZ_AP012332_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP012332_3

697301-699158

TypeI-E

I-C,I-E,II-B

Consensus_repeat	Method
GTATTTCCCGCATACGCGGGGGTGATCC	CRISPRCasFinder
GTATTTCCCGCATACGCGGGGGTGATCC	CRT
GTATTTCCCGCATACGCGGGGGTGATCC	PILER-CR

30 spacers

DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_AP012332_3

>merge|NZ_AP012332|3|697301-699158|CRISPRCasFinder,CRT,PILER-CR
GTATTTCCCGCATACGCGGGGGTGATCCCCTTCACGTTCTTTTGCTTTACAAGTATCCTGCGTATTTCCCGCATACGCGGGGGTGATCCCGGCACGGTTAAGCCGTTTGATATGCCGCTCCCGTATTTCCCGCATACGCGGGGGTGATCCCTCATCATTGGCTACACTCTCTGGATGCTTTAAGTATTTCCCGCATACGCGGGGGTGATCCCCGTAAAGTTTGCATAATGCGGCAACCAGATGCGTATTTCCCGCATACGCGGGGGTGATCCTGTGTTTTTACGAGGTTTTATACCTTCAAAAAGGTATTTCCCGCATACGCGGGGGTGATCCTCGTTAATGCGTGCTAAAAAGTTTTGTAAATACGTATTTCCCGCATACGCGGGGGTGATCCTTATAAGCTGTAATTATAGGTGTAATATCTTTAGTATTTCCCGCATACGCGGGGGTGATCCTGGTTTGACGGTTCAGAAACAGATGTTTATGTAGTATTTCCCGCATACGCGGGGGTGATCCTATCAATTTAAGAGCGAAAAGAAAAGTTTTTATGTATTTCCCGCATACGCGGGGGTGATCCCCGATGCGCAATGAGTGATTATGATTTTAGAGCGTATTTCCCGCATACGCGGGGGTGATCCCCGATGCGCAATGAGTGATTATGATTTTAGAGCGTATTTCCCGCATACGCGGGGGTGATCCCACTCTTGTAGATGCTGTGCTTGAGCGGCTTATGTATTTCCCGCATACGCGGGGGTGATCCGCGTCGTGCCGCGGCGTGCGATAGTGTCATCGAGTATTTCCCGCATACGCGGGGGTGATCCTTGTACTAGGTGGCGCAATCGATAGTTTTATTGGTATTTCCCGCATACGCGGGGGTGATCCTATGGCATTAAACGGCATTGACATATCATGGTAGTATTTCCCGCATACGCGGGGGTGATCCTATTTTCCTTATTTTGAGCTAATAATAAATTTAGTATTTCCCGCATACGCGGGGGTGATCCTAATCAAATTATTCGGATACTAAAAACCAAACCGTATTTCCCGCATACGCGGGGGTGATCCTCGTCATCACTCCATCCTTAAGCACAGGCTCAAGTATTTCCCGCATACGCGGGGGTGATCCTGAGCTTGTAAACGCTCTTGTAGATGCTGTGCTGTATTTCCCGCATACGCGGGGGTGATCCGTATGATGCATTGACGTGACATCTAAAGAACAAGTATTTCCCGCATACGCGGGGGTGATCCCTAACACGTTAGCAGATGTAGCCATTCGTGAACGTATTTCCCGCATACGCGGGGGTGATCCCAAACGTTCTTCATTGCTTGCATTGCAAAATTAGTATTTCCCGCATACGCGGGGGTGATCCCCCAATGGCTTCCTCATCTCTAGCACGCTGCGCGTATTTCCCGCATACGCGGGGGTGATCCCTTGTATTCTCAATCAGAGAATACTTTGAGTATGTATTTCCCGCATACGCGGGGGTGATCCCGAAGCCTGCGAAGTGTTCCTGCTGGAATGTTTGTATTTCCCGCATACGCGGGGGTGATTCCACGCCCGAATTGGGTATACTAAGTGTGTCGTTGTATTTCCCGCATACGCGGGGGTGATCCTGTCAAGTGTACCATCTTTTAATTCTTGTGCTAGTATTTCCCGCATACGCGGGGGTGATCCCGTATCATACTTTCTGAGTTTTGTCCTTATTGTGTATTTCCCGCATACGCGGGGGTGATCCCGAGTTGAGCGGCAAAGTCGAACATGAAACACAGTATTTCCCGCATACGCGGGGGTGATCCTAAGCACCCTAAAAACGCGGCGGGTATAACCACGTCTTTTCCGCATACGCTGGATAAAACC

>NZ_AP012332|3|2|697301-699158|CRISPRCasFinder
GTATTTCCCGCATACGCGGGGGTGATCC	CCTTCACGTTCTTTTGCTTTACAAGTATCCTGC
GTATTTCCCGCATACGCGGGGGTGATCC	CGGCACGGTTAAGCCGTTTGATATGCCGCTCCC
GTATTTCCCGCATACGCGGGGGTGATCC	CTCATCATTGGCTACACTCTCTGGATGCTTTAA
GTATTTCCCGCATACGCGGGGGTGATCC	CCGTAAAGTTTGCATAATGCGGCAACCAGATGC
GTATTTCCCGCATACGCGGGGGTGATCC	TGTGTTTTTACGAGGTTTTATACCTTCAAAAAG
GTATTTCCCGCATACGCGGGGGTGATCC	TCGTTAATGCGTGCTAAAAAGTTTTGTAAATAC
GTATTTCCCGCATACGCGGGGGTGATCC	TTATAAGCTGTAATTATAGGTGTAATATCTTTA
GTATTTCCCGCATACGCGGGGGTGATCC	TGGTTTGACGGTTCAGAAACAGATGTTTATGTA
GTATTTCCCGCATACGCGGGGGTGATCC	TATCAATTTAAGAGCGAAAAGAAAAGTTTTTAT
GTATTTCCCGCATACGCGGGGGTGATCC	CCGATGCGCAATGAGTGATTATGATTTTAGAGC
GTATTTCCCGCATACGCGGGGGTGATCC	CCGATGCGCAATGAGTGATTATGATTTTAGAGC
GTATTTCCCGCATACGCGGGGGTGATCC	CACTCTTGTAGATGCTGTGCTTGAGCGGCTTAT
GTATTTCCCGCATACGCGGGGGTGATCC	GCGTCGTGCCGCGGCGTGCGATAGTGTCATCGA
GTATTTCCCGCATACGCGGGGGTGATCC	TTGTACTAGGTGGCGCAATCGATAGTTTTATTG
GTATTTCCCGCATACGCGGGGGTGATCC	TATGGCATTAAACGGCATTGACATATCATGGTA
GTATTTCCCGCATACGCGGGGGTGATCC	TATTTTCCTTATTTTGAGCTAATAATAAATTTA
GTATTTCCCGCATACGCGGGGGTGATCC	TAATCAAATTATTCGGATACTAAAAACCAAACC
GTATTTCCCGCATACGCGGGGGTGATCC	TCGTCATCACTCCATCCTTAAGCACAGGCTCAA
GTATTTCCCGCATACGCGGGGGTGATCC	TGAGCTTGTAAACGCTCTTGTAGATGCTGTGCT
GTATTTCCCGCATACGCGGGGGTGATCC	GTATGATGCATTGACGTGACATCTAAAGAACAA
GTATTTCCCGCATACGCGGGGGTGATCC	CTAACACGTTAGCAGATGTAGCCATTCGTGAAC
GTATTTCCCGCATACGCGGGGGTGATCC	CAAACGTTCTTCATTGCTTGCATTGCAAAATTA
GTATTTCCCGCATACGCGGGGGTGATCC	CCCAATGGCTTCCTCATCTCTAGCACGCTGCGC
GTATTTCCCGCATACGCGGGGGTGATCC	CTTGTATTCTCAATCAGAGAATACTTTGAGTAT
GTATTTCCCGCATACGCGGGGGTGATCC	CGAAGCCTGCGAAGTGTTCCTGCTGGAATGTTT
GTATTTCCCGCATACGCGGGGGTGATTC	CACGCCCGAATTGGGTATACTAAGTGTGTCGTT
GTATTTCCCGCATACGCGGGGGTGATCC	TGTCAAGTGTACCATCTTTTAATTCTTGTGCTA
GTATTTCCCGCATACGCGGGGGTGATCC	CGTATCATACTTTCTGAGTTTTGTCCTTATTGT
GTATTTCCCGCATACGCGGGGGTGATCC	CGAGTTGAGCGGCAAAGTCGAACATGAAACACA
GTATTTCCCGCATACGCGGGGGTGATCC	TAAGCACCCTAAAAACGCGGCGGGTATAACCAC
GTCTTTTCCGCATACGCTGGATAAAACC

>NZ_AP012332|3|1|697301-699158|CRT
GTATTTCCCGCATACGCGGGGGTGATCC	CCTTCACGTTCTTTTGCTTTACAAGTATCCTGC
GTATTTCCCGCATACGCGGGGGTGATCC	CGGCACGGTTAAGCCGTTTGATATGCCGCTCCC
GTATTTCCCGCATACGCGGGGGTGATCC	CTCATCATTGGCTACACTCTCTGGATGCTTTAA
GTATTTCCCGCATACGCGGGGGTGATCC	CCGTAAAGTTTGCATAATGCGGCAACCAGATGC
GTATTTCCCGCATACGCGGGGGTGATCC	TGTGTTTTTACGAGGTTTTATACCTTCAAAAAG
GTATTTCCCGCATACGCGGGGGTGATCC	TCGTTAATGCGTGCTAAAAAGTTTTGTAAATAC
GTATTTCCCGCATACGCGGGGGTGATCC	TTATAAGCTGTAATTATAGGTGTAATATCTTTA
GTATTTCCCGCATACGCGGGGGTGATCC	TGGTTTGACGGTTCAGAAACAGATGTTTATGTA
GTATTTCCCGCATACGCGGGGGTGATCC	TATCAATTTAAGAGCGAAAAGAAAAGTTTTTAT
GTATTTCCCGCATACGCGGGGGTGATCC	CCGATGCGCAATGAGTGATTATGATTTTAGAGC
GTATTTCCCGCATACGCGGGGGTGATCC	CCGATGCGCAATGAGTGATTATGATTTTAGAGC
GTATTTCCCGCATACGCGGGGGTGATCC	CACTCTTGTAGATGCTGTGCTTGAGCGGCTTAT
GTATTTCCCGCATACGCGGGGGTGATCC	GCGTCGTGCCGCGGCGTGCGATAGTGTCATCGA
GTATTTCCCGCATACGCGGGGGTGATCC	TTGTACTAGGTGGCGCAATCGATAGTTTTATTG
GTATTTCCCGCATACGCGGGGGTGATCC	TATGGCATTAAACGGCATTGACATATCATGGTA
GTATTTCCCGCATACGCGGGGGTGATCC	TATTTTCCTTATTTTGAGCTAATAATAAATTTA
GTATTTCCCGCATACGCGGGGGTGATCC	TAATCAAATTATTCGGATACTAAAAACCAAACC
GTATTTCCCGCATACGCGGGGGTGATCC	TCGTCATCACTCCATCCTTAAGCACAGGCTCAA
GTATTTCCCGCATACGCGGGGGTGATCC	TGAGCTTGTAAACGCTCTTGTAGATGCTGTGCT
GTATTTCCCGCATACGCGGGGGTGATCC	GTATGATGCATTGACGTGACATCTAAAGAACAA
GTATTTCCCGCATACGCGGGGGTGATCC	CTAACACGTTAGCAGATGTAGCCATTCGTGAAC
GTATTTCCCGCATACGCGGGGGTGATCC	CAAACGTTCTTCATTGCTTGCATTGCAAAATTA
GTATTTCCCGCATACGCGGGGGTGATCC	CCCAATGGCTTCCTCATCTCTAGCACGCTGCGC
GTATTTCCCGCATACGCGGGGGTGATCC	CTTGTATTCTCAATCAGAGAATACTTTGAGTAT
GTATTTCCCGCATACGCGGGGGTGATCC	CGAAGCCTGCGAAGTGTTCCTGCTGGAATGTTT
GTATTTCCCGCATACGCGGGGGTGATTC	CACGCCCGAATTGGGTATACTAAGTGTGTCGTT
GTATTTCCCGCATACGCGGGGGTGATCC	TGTCAAGTGTACCATCTTTTAATTCTTGTGCTA
GTATTTCCCGCATACGCGGGGGTGATCC	CGTATCATACTTTCTGAGTTTTGTCCTTATTGT
GTATTTCCCGCATACGCGGGGGTGATCC	CGAGTTGAGCGGCAAAGTCGAACATGAAACACA
GTATTTCCCGCATACGCGGGGGTGATCC	TAAGCACCCTAAAAACGCGGCGGGTATAACCAC
GTCTTTTCCGCATACGCTGGATAAAACC

>NZ_AP012332|3|2|697789-699097|PILER-CR
GTATTTCCCGCATACGCGGGGGTGATCC	TATCAATTTAAGAGCGAAAAGAAAAGTTTTTAT
GTATTTCCCGCATACGCGGGGGTGATCC	CCGATGCGCAATGAGTGATTATGATTTTAGAGC
GTATTTCCCGCATACGCGGGGGTGATCC	CCGATGCGCAATGAGTGATTATGATTTTAGAGC
GTATTTCCCGCATACGCGGGGGTGATCC	CACTCTTGTAGATGCTGTGCTTGAGCGGCTTAT
GTATTTCCCGCATACGCGGGGGTGATCC	GCGTCGTGCCGCGGCGTGCGATAGTGTCATCGA
GTATTTCCCGCATACGCGGGGGTGATCC	TTGTACTAGGTGGCGCAATCGATAGTTTTATTG
GTATTTCCCGCATACGCGGGGGTGATCC	TATGGCATTAAACGGCATTGACATATCATGGTA
GTATTTCCCGCATACGCGGGGGTGATCC	TATTTTCCTTATTTTGAGCTAATAATAAATTTA
GTATTTCCCGCATACGCGGGGGTGATCC	TAATCAAATTATTCGGATACTAAAAACCAAACC
GTATTTCCCGCATACGCGGGGGTGATCC	TCGTCATCACTCCATCCTTAAGCACAGGCTCAA
GTATTTCCCGCATACGCGGGGGTGATCC	TGAGCTTGTAAACGCTCTTGTAGATGCTGTGCT
GTATTTCCCGCATACGCGGGGGTGATCC	GTATGATGCATTGACGTGACATCTAAAGAACAA
GTATTTCCCGCATACGCGGGGGTGATCC	CTAACACGTTAGCAGATGTAGCCATTCGTGAAC
GTATTTCCCGCATACGCGGGGGTGATCC	CAAACGTTCTTCATTGCTTGCATTGCAAAATTA
GTATTTCCCGCATACGCGGGGGTGATCC	CCCAATGGCTTCCTCATCTCTAGCACGCTGCGC
GTATTTCCCGCATACGCGGGGGTGATCC	CTTGTATTCTCAATCAGAGAATACTTTGAGTAT
GTATTTCCCGCATACGCGGGGGTGATCC	CGAAGCCTGCGAAGTGTTCCTGCTGGAATGTTT
GTATTTCCCGCATACGCGGGGGTGATTC	CACGCCCGAATTGGGTATACTAAGTGTGTCGTT
GTATTTCCCGCATACGCGGGGGTGATCC	TGTCAAGTGTACCATCTTTTAATTCTTGTGCTA
GTATTTCCCGCATACGCGGGGGTGATCC	CGTATCATACTTTCTGAGTTTTGTCCTTATTGT
GTATTTCCCGCATACGCGGGGGTGATCC	CGAGTTGAGCGGCAAAGTCGAACATGAAACACA
GTATTTCCCGCATACGCGGGGGTGATCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP012332.1\|WP_004112679.1\|696113_697193_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648
NZ_AP012332.1\|WP_004111893.1\|707175_708075_+\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224033
NZ_AP012332.1\|WP_032836391.1\|699940_700255_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP012332.1\|WP_004112674.1\|694497_695145_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
NZ_AP012332.1\|WP_004111910.1\|699652_699814_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP012332.1\|WP_004111911.1\|699312_699642_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP012332.1\|WP_004115334.1\|704147_705332_+\|zinc-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|376518
NZ_AP012332.1\|WP_009994023.1\|691765_692380_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NZ_AP012332.1\|WP_009994022.1\|693621_694497_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_AP012332.1\|WP_004138505.1\|692474_693563_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_AP012332.1\|WP_009994024.1\|690072_691743_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
NZ_AP012332.1\|WP_004111901.1\|702061_702748_-\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|319790
NZ_AP012332.1\|WP_009994025.1\|687230_690086_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_AP012332.1\|WP_004112676.1\|695170_696112_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_AP012332.1\|WP_004112662.1\|686078_686375_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP012332.1\|WP_009993726.1\|702762_703806_-\|NAD(P)H-hydrate-dehydratase	unknown	unknown	gnl\|CDD\|238576
NZ_AP012332.1\|WP_004111894.1\|706228_707173_+\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224033
NZ_AP012332.1\|WP_013399558.1\|705426_706239_+\|metal-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224046
NZ_AP012332.1\|WP_013399551.1\|682217_684398_-\|DUF2075-domain-containing-protein	unknown	unknown	gnl\|CDD\|378274
NZ_AP012332.1\|WP_004115343.1\|701029_701962_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656

Protein	Function_ID	Function_description	E-value
NZ_AP012332.1\|WP_004112679.1\|696113_697193_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	1.81974e-38
NZ_AP012332.1\|WP_004111893.1\|707175_708075_+\|metal-ABC-transporter-permease	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	5.00817e-23
NZ_AP012332.1\|WP_004111901.1\|702061_702748_-\|HAD-family-phosphatase	gnl\|CDD\|319790	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive. This family includes the N-terminal phosphatase domain of human soluble epoxide hydrolase (sEH). sEH is a bifunctional enzyme with two distinct enzyme activities, the C-terminal domain has epoxide hydrolysis activity and the N-terminal domain (Ntermphos), which belongs to this family, has lipid phosphatase activity. The latter prefers mono-phosphate esters, and lysophosphatidic acids (LPAs) are the best natural substrates found to date. In addition this family includes Gallus gallus sEH and Xenopus sEH which appears to lack phosphatase activity, and Escherichia coli YihX/HAD4 which selectively hydrolyzes alpha-Glucose-1-P, phosphatase, has significant phosphatase activity against pyridoxal phosphate, and has low beta phosphoglucomutase activity. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.04683e-45
NZ_AP012332.1\|WP_004112674.1\|694497_695145_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	4.98175e-73
NZ_AP012332.1\|WP_004115334.1\|704147_705332_+\|zinc-ABC-transporter-substrate-binding-protein	gnl\|CDD\|376518	pfam01297, ZnuA, Zinc-uptake complex component A periplasmic. ZnuA includes periplasmic solute binding proteins such as TroA that interacts with an ATP-binding cassette transport system in Treponema pallidum. ZnuA is part of the bacterial zinc-uptake complex ZnuABC, whose components are the following families, ZinT, pfam09223, pfam00950, pfam00005, all of which are regulated by the transcription-regulator family FUR, pfam01475. ZinT acts as a Zn2+-buffering protein that delivers Zn2+ to ZnuA (TroA), a high-affinity zinc-uptake protein. In Gram-negative bacteria the ZnuABC transporter system ensures an adequate import of zinc in Zn2+-poor environments, such as those encountered by pathogens within the infected host.	8.14555e-65
NZ_AP012332.1\|WP_009994023.1\|691765_692380_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	4.90469e-35
NZ_AP012332.1\|WP_009994022.1\|693621_694497_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	6.54593e-44
NZ_AP012332.1\|WP_004138505.1\|692474_693563_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.86395e-158
NZ_AP012332.1\|WP_009994024.1\|690072_691743_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	1.10239e-102
NZ_AP012332.1\|WP_009994025.1\|687230_690086_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.56911e-83
NZ_AP012332.1\|WP_004112676.1\|695170_696112_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.61611e-129
NZ_AP012332.1\|WP_009993726.1\|702762_703806_-\|NAD(P)H-hydrate-dehydratase	gnl\|CDD\|238576	cd01171, YXKO-related, B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.	5.43853e-50
NZ_AP012332.1\|WP_004111894.1\|706228_707173_+\|metal-ABC-transporter-permease	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	1.66379e-30
NZ_AP012332.1\|WP_013399558.1\|705426_706239_+\|metal-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224046	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism].	2.04479e-76
NZ_AP012332.1\|WP_013399551.1\|682217_684398_-\|DUF2075-domain-containing-protein	gnl\|CDD\|378274	pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.	5.78613e-77
NZ_AP012332.1\|WP_004115343.1\|701029_701962_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.2068e-33

>NZ_AP012332.1|WP_004112679.1|696113_697193_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MPLTVITMTNCPLSLRGDLTKWMQEIATGVYVGNFNSRVREELWKRIEDSVGNGAVTMSFSSRNEIGYDFKTIHSHREVVYSDGLPLVRIPTVDTLENDIKHGFSDAAHFHNARKFSNVRRKSINTTSNKIENNLTTESISYLSYDNVSQNAKFTTNNEEITCTDYWKDFIGKTSKNFVVIDCETTGLNSKVDKIIEIGAVKFIDGKIEEFQKLININCDSVSNFNKNNFIPNEIIELTGITSNMLESYGVGLDLALREFIDFVGKLPLLGYNVSFDIGFFNSALFSLDEKLSSAFSVNKVIDISRFVKHDRRFLKNYQLKTVLHEYNISESVPHRALLDARLTARLVLNLTELLKFLS
>NZ_AP012332.1|WP_004112676.1|695170_696112_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MKKKFGAKKAEIPELPRISDRVSFIYVEHAKINRLDSAVTVFDANGTIRVPAAMIGVLLLGPGTEITHRAMELLGDVGASIVWVGEHGVRNYAHGRALSRSSRLLEKQAKLVTNNRSRLSVARKMYQMRFPNENVSSYTMQQLRGREGARVRHVYREMSNQYNVQWNGRDYKIDDFESGTVVNQALSVGNVCLYGLVHSIISALGLAPGLGFVHTGHDLSLVYDIADLYKAELTIPASFEVASQCESEDDIEQLMRLKMRDCFANCNIMSRIVNDIQNLLEIPIDEQITVDVIHLWDDKELLVDSGINYSEVN
>NZ_AP012332.1|WP_004112674.1|694497_695145_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MSYLSRVEIDYKKPSSLRDLKSVGAFHNWVEQSFPDEWENHERSRKLWRVDVLHGKHYLLIVSDSEPDLQRLEMYGVAGTASSKNYDKFLGSLMNGMRMQFRVTLNPVVSISDTAETRTTRGRVVPHVTYDQQMNFLLNRAQKLGFSLNENEFAIVERGYSLFTKSEKPIRLSKAVYQGILTISDAKIMRKTLLEGIGKKKAYGFGMMTVIPLDN
>NZ_AP012332.1|WP_009994022.1|693621_694497_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKSLLLKFSGPLQSWGTDSHFETRHTDYYPSKSAVVGMIAAAFGYRRSADCDEAIAKLNDLDFAVRIDQQGNLLRDYHIAAKYKSNGDFEKNYVTNRYYLEDAIFLVAIGSDNEQLIYSINDALRSPYFQSSLGRRSLPPTADFILGVEDCGVIQALLTHEWLANKWSKKRFNTFRLSDSSESADESCNEVFISLYADSDLVDKAAAELVKDDTSTYKIQGSVRRLRKDFVNSFSNKERKFGFRYESKVEIPIKRILHNNSDSEGISSDSKHVKSTGDFIAEHDAFSGLES
>NZ_AP012332.1|WP_004138505.1|692474_693563_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MNAHLFLDIQAIQTVPPCNINRDDAGSPKTAQYGGVTRTRISSQCWKHSMREYFKEHSGDSNVGIRSKNIVKYVADKIITLKPELSEQEALDLADKTLNTAGVKTKTDKGETVPTAKALFFLGETQANSLAQAAINNVTDKKQLQEILRDNPPIDIALFGRMLADDPSLNEDASSQVAHAISTHAVRTEFDYYTAVDDLSADDNAGAGMLGTIEYNSSTLYRYANVAVHEFSHQLSDNKESTINALRLFIEAFANAMPTGKVNTFANQTLPQMLVVTLRDDRPVNLVSAFEDPVKSKDGYVSKSIEKLSQEYEKVQKFVHKPLASFYVTMDSSNEEIKLGVEEQSMQQLLDDFSSKVSEFLQ
>NZ_AP012332.1|WP_009994023.1|691765_692380_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MAENKSKSVEVSNAVSKIINQFLNSSDIASRRTMLAQLRHTIGKPLSQSIEIWPWILNNVPESFIDKYGEVNYQLRAVINTLQIYALYEQGVAEKSSYKDLNKSEDSENEKSYNNMGTALRTLRSDEGVRGAMDRRFSVMITANDYESFYYYLRQLVRLLKSRTKENQQSIDYSKLARDLYLLQFEDSEKVRLSWAQEYYRLSK
>NZ_AP012332.1|WP_009994024.1|690072_691743_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MSRFNLLDEPWISVIVDEKGHNKLVSITDVFKHASEYKALAGDMKTQDFALLRVLLAAIHTVFSRYDIQGNSREFDSGEDSEDDFNEETMDIWREVWNSKKFPDAVFKYLEQWHDHFYLFDDKYPFFQVLKQDIDSKKLGGKSPSEISGKNINRLISESNNKIAVFSPKDNVDNNKSSLTEPQLARWIITLQSYAGLADKTMFGTEKYKASKGWLFDLGGIEIIGANLFETLMLNCVLVGDVQSPEKKQKPCWEYSGTENIENSFYETFIDNISQLYTRWSRAIYINPDISVDKPISVSIVKLPDINHKNSFIEPMTVWQYNKEGENKDKYTPRKHRTEEAMWRSFGLLTSQELYDGSVKNHKPGIMEWLNKIKHDITGSSISLQAISMKDDGNATSWVPTDEICDTLYIDEVVVTDNADDGWVYRINNEVEYTRSAIGFIYKQFLLDICEIRNRNKDDATKYSAKYISQAYFLVDQPFREWLANIKPKDSMNERCTQWRNTLHNILIDEAKGMLENATLRDFTGRPSDQSEKESTKNIVTAYNIFTSRLKKLSGK
>NZ_AP012332.1|WP_009994025.1|687230_690086_+|CRISPR-associated-helicase/endonuclease-Cas3
MSCNHVVNTELWGKKREVNGVMQWLPLAQHLEDTGNVIGQLWDHWLSDGQRRLIESSLSKRVDAKKLSQFLGCIHDIGKATPVFQFRKSYSNSKDLDIALKNKLATVGFTNINDFIIKAEDWSSSHHTITGQAILSNTGVPEGVCAIVGAHHGKPLDNDSVYKSNESAYTDHYYQSETESENSKLWQKLQNDILDWALERNDFSNVDDLPEISEPAQVLLCGLVIMADWIASNEQYFPLIPIEKDLIENQEERYRKGWEKWLQHGSKDVWESLNCCSNISQIYKHRFGFLPNSIQTALYNVISHCKEPGIFILESSMGSGKTEASLIAAEQLANLTGRSGVFFGLPTQATSNGMFRRVEDWLKSVNSDFQGEIGLRLVHGKAELNADYAHLLHGMQNMNDGCESTSSSNDVNNNGVILNDWFTGRKTAMLDDFVVGTVDQFLLASLKQKHLMLRHLGLSKKVVIIDEVHAYDAYMNKYLEESLVWMAAYGVPVVLLSATLPAKRRKELIKAYMCGLFGFNWRECDKSNVDFETNNYPLITYSDKNCVKQKFIENDASDNKSVSVRKITDDSLHESLVNELKSLLNNGGIAGIIVNTVKRAQEIYNACVGEFTDEEVIVIHSQFIATDRVRKEQQICNMIGKNAHRPVRAIIIGTQVLEQSLDVDFDVLFTDLAPIDLLLQRAGRLHRHMIERPDSFKEPILYVLGTSERYEFEKASESIYSKYLLIRTQYYLPDVINMPQDISRLVQIVYGDNLLELQEDLKDAYAAAKREHDSVRNSNESAAKTYRIENPKSEIGKKSIVGLLKNSITNESDEFACAQVRNSGESIEVIAVKKVGSGYGTFHDCEDISQNIDYSEVAMRLAQETVGLPWMFTLNNNRIEETINELERIRKQKQFQNWDNQPWLRGSLVLLFDENNICEISKYRVVYSEKSGIVCIKSLEEDRKELKGEQV
>NZ_AP012332.1|WP_004112662.1|686078_686375_+|hypothetical-protein
MNMQKIYYDTAEKLRPYAEPYMDKLCKEAASNATCAGEPYEALADYLSFAWEHQDTPRKLIIEAYNLIDDDYLDSYNEMADKLGIPRRQHSADYDEDE
>NZ_AP012332.1|WP_013399551.1|682217_684398_-|DUF2075-domain-containing-protein
MMKAIVPPKSIIVNLPYKVFKDNELEHSINENLKYKRSDLDNQTIQVLKHYLLKFPTVYIVHKKEYERYTVYVGETNNIEERTKQHLNADTKIRDDWEKLSEGEVKQYIIANEHFNKSLTLDVENRFMQYLLSVDSINEVTNRRTNPQGEYYPEEEFERIFSGIWVQLHDMDPDLFPEEGIIRDSALFKASPFHKLTSEQKTIERKVIDIVNEALKSKNKCDSDSSTLILLEGDAGTGKTVLLSDLFYKICNKLSKIKNQLRQYSYDSVEEENEEDSDYEYKQFSTINNRKTACIIVNHKEQVNVYNQIATKLRLQKNNDELVMLPSQFINRFSEQTEQGRGIIDRPKRCCDVALIDEAHLLNTQANQAYSGSNMLSDILCRSRVVIAAFDPNQILQSNQRWNSEDLEKLLGTYCKDKKSFGNSANDCGALSLNDSISVNVRRFILENQMRMRANKNVLEWIKNFIYNGCIGTLPVCSNSEIKNADSNNADKPFDFKVFDSPIKLFKAIKSKSEEKASGCDGHGLSRIVATYDWEYKNNKNNPTAVNGTWNVDLHCDSNGQWYMGLGEYADASSSELEILEREGKIFSHPWNYQLSSLDSSKHSHSIKETKKSWAEQPHTINEIGSTFTVQGFDLNYAGVIIGPSVQYRNGKVVFCPENSRNDKATNKRHTKDLSAKKKITLDYSIDNLKNELNVLLKRGVNGLYIFAVDTELEKALLDAQRNSFI
>NZ_AP012332.1|WP_004111911.1|699312_699642_-|hypothetical-protein
MLDENGQTVLVSLHDIARLLGVGYESMRQYLVRSRRAALDGQDASSLRGLIPLPTHSVGALTAKPAWDYDIIRDWAARRPHRPVELPSSWQALQEAVSKAAKAESNNQQ
>NZ_AP012332.1|WP_004111910.1|699652_699814_-|hypothetical-protein
MSKTRVLGIISAICAITAATNVVLQVPFAGIGFTLAAGIAGLSAGLTGSSKEK
>NZ_AP012332.1|WP_032836391.1|699940_700255_-|hypothetical-protein
MCFAPIIKVLMFYYGRYETRVGSHTIRQYLVITRKKQKAGTLTIADFPLPDALAGIVQEAPLWNYETIRMYAANRSRNPIVLPNSAADAAELIRLLVAEGTARR
>NZ_AP012332.1|WP_004115343.1|701029_701962_-|LysR-family-transcriptional-regulator
MTLLQLKYIVKIVECGSMNEASHELYVSQPALSSSVKELERELGIEIFTRSSQGIALTVDGAEFLTYARQVLDQADLLEERYNSTKPRKQLCSVATQHYMFAVEAFVDMIRSIDSNEYEFSLRETRTKNIINQVTSMRADLGLLYLSDYNKDVIGKMLREKHLEFHPLFRAKLHVFISRNNPLAGHKKLTLEDLRPYPFIQYEQGEDGSFFFTEEAVWPQHPPKKINVTDRATILNFIIGLNGFTICTGIDNGDLNNEKIVTIPLDCEETMLVGWIKNERTNLSPAAIAYLSQLESVLIKHGYQVISRAK
>NZ_AP012332.1|WP_004111901.1|702061_702748_-|HAD-family-phosphatase
MKNTNINTNINTNENVESVEIHDVMFDYCKVLLEWNCRNCLQKQFPDLVDTICPNGTFGKDDLAGFYEFEDRMDGGELLKDLLPEYERRFGKELSNAFQWYCAHYDQVLTQMMPGMVDLLHDLRKAGYGVWGLTNWSKETFPLALRKFPELNTLLQGTIISGVEKLHKPQPEIFELAMSRFGLKPQTTVFFDDKPVNIDGAHNVGMHGFVFTTTEQARKDLASLGVRL
>NZ_AP012332.1|WP_009993726.1|702762_703806_-|NAD(P)H-hydrate-dehydratase
MSELLNIEAKDVSKCLKKPKPFYNKYSRGVLGLVTGSNEYPGAAILSASAASHANIGMVRYAGPLRAQNLVLQTSPEVVASEQLTGKIDAITVGSGIPDADHCNTEASANQRKYIASILAQYAKENNNSKEQSISQKDNLPPLCVDAGALDLLPKHVCTKVVLTPHTGELSSLFTRYDLNISAQQISSNPTHYAQKAADLTGATVLVKGATTAVASPSELHSPIYIAKCAPSWLATAGSGDVLAGILGALLAQRERKENNKNCAENYAENYANYAENENYAFIAASAAVIHGISASLASKINSENNYTQLAQDIVESNDASTSDHPIVASDIINALPYIIGLLMNLN
>NZ_AP012332.1|WP_004115334.1|704147_705332_+|zinc-ABC-transporter-substrate-binding-protein
MKTARIFATAATAALLTVGLCACGSTAKTADQKTNGNQVNVVATTTQICDYVTQIASTADAKSGLSLNKTDSQGKKSVIGAPQDKAKSTINLTCLLAPNASAHEHEMTPAQSKALSKADLMLVSGVDLEHFLDQAVKATGFKGTMGVTSGILTADEIKDSKAEAAKEKNLPYKIDRGVEKVHAEKWPFPPEEGEKEPEFQYDPHIWTSTKNTMIQVKNIGNFLGKALPESKSIFDEHVEKFVKSLTDLDSWATEALNSVPQEHRVLFTSHDAFGYFSRDYNVKFIGAALSDFNSQQDATADHIKEAAEAVKKSGAVAIFAENSNNSKSIKAVAAAAGVKAIIGDDALYGDSLGPVGSAGETYIGSIVHNVQTLVKAWDGKVPDLPESVKTALKK
>NZ_AP012332.1|WP_013399558.1|705426_706239_+|metal-ABC-transporter-ATP-binding-protein
MKDCDLAYGYKTVVTGLNGSVEAGEALALIGPNGSGKTTFLQAIIGIVRVSHGSLTMPKTVSIGYVPQQVDLDLTFPITARQVVAMGLSRQTGFLGLLKKSQKKSVEDALNHVGLLNRADVRFGDLSGGQRQRILLARAIVARPTLILLDEPFNGLDEPNRKELLNIMKSAKEDGISFVVSTHDLVIADAICEKALLLAGRQVAFGPLRKVMTKENISLAYGGSMPAASAGITLNQLANKDDSLNAASVTSTFSDSSISGTALGDESNAS
>NZ_AP012332.1|WP_004111894.1|706228_707173_+|metal-ABC-transporter-permease
MLAELVESLRKILEPIPGFDFIASAPYIFRPFCLLIVLAIASGIVGVFVNLRCAEFNAEALVHGIFPGIVVGALYGGIGQIIPGASICAIFLVAALVWASRSQKINESIIATVLTTFFALGIVISLKKGDMSGQLEALMFGRLLDVTDDRMTQAMLICLFAIALLVLTWKKQIVVAFDRASAPLMGVNTLLVDIVLNVAIASVVVSASSAVGVLLVIGYLVIPGASARLVSRTVGRMAFVGVAVGIFGVLLGMYAMNLELDHPVSPQAAVALSICAMFVVVLILRFLYRVTYALVFSKKFSKKKKSSAIDGGGK
>NZ_AP012332.1|WP_004111893.1|707175_708075_+|metal-ABC-transporter-permease
MVSIWQIIALPIVEAIAVGALCGFVGSLALLNQRIFFTESITHAAFPGAVIGVVVTSVYTIDQNVLSIGLFIGAALACIVLSFMMHVLSKLKGISSQASAGITLTVGFASGYFLNKWFAPLPLRIEGFLTGSLLNCTPADVIFAIIAFALALGLWSFNSANLIHCSFDSTNYKALGGRSGLMQGIVLALIIITVSVIIPAVGTVVSVSLIAAPAAALKSRMRSINKFVFACVLSSIFIALLGLALAVILRLSAGGTIAICAGCFYLVVKLSESIFLKIHEIYSGFCKKSLLKSRSVVLE

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Crispr_ID: NZ_AP012332_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP012332_4

985079-985156

Orphan

Consensus_repeat	Method
TTGAGCTACAAAACCCGTCAATCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP012332_4

>merge|NZ_AP012332|4|985079-985156|CRISPRCasFinder
TTGAGCTACAAAACCCGTCAATCTTTTCCGCTTTTTGTTGCTCTACACACCATTTTGAGCTACAAAACCCGTCAACTA

>NZ_AP012332|4|3|985079-985156|CRISPRCasFinder
TTGAGCTACAAAACCCGTCAATCT	TTTCCGCTTTTTGTTGCTCTACACACCATT
TTGAGCTACAAAACCCGTCAACTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP012332.1\|WP_162861257.1\|995504_996257_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224051
NZ_AP012332.1\|WP_013399624.1\|980238_980784_-\|GNAT-family-N-acetyltransferase	unknown	unknown	unknown
NZ_AP012332.1\|WP_009993755.1\|973837_975088_+\|AGE-family-epimerase/isomerase	unknown	unknown	gnl\|CDD\|369267
NZ_AP012332.1\|WP_009994174.1\|988960_990724_-\|glycoside-hydrolase-family-13-protein	unknown	unknown	gnl\|CDD\|200477
NZ_AP012332.1\|WP_013399623.1\|978756_980112_-\|alanine-racemase	unknown	unknown	gnl\|CDD\|143481
NZ_AP012332.1\|WP_004113518.1\|987321_988257_+\|pyridoxal-5'-phosphate-synthase-lyase-subunit-PdxS	unknown	unknown	gnl\|CDD\|179769
NZ_AP012332.1\|WP_004113501.1\|996392_997385_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_AP012332.1\|WP_009993756.1\|970285_973411_-\|alpha-mannosidase	unknown	unknown	gnl\|CDD\|212101
NZ_AP012332.1\|WP_004113500.1\|997545_998472_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270225
NZ_AP012332.1\|WP_048653126.1\|983190_984036_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_AP012332.1\|WP_013399627.1\|984044_985013_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_AP012332.1\|WP_009993502.1\|981527_983201_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224048
NZ_AP012332.1\|WP_004113534.1\|977428_978712_-\|deoxyguanosinetriphosphate-triphosphohydrolase	unknown	unknown	gnl\|CDD\|235098
NZ_AP012332.1\|WP_009994176.1\|991986_993477_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270303
NZ_AP012332.1\|WP_004114934.1\|993488_995396_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_AP012332.1\|WP_009993754.1\|975266_977369_-\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NZ_AP012332.1\|WP_004113516.1\|988272_988866_+\|pyridoxal-5'-phosphate-synthase-glutaminase-subunit-PdxT	unknown	unknown	gnl\|CDD\|237411
NZ_AP012332.1\|WP_004113520.1\|985220_986903_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173859
NZ_AP012332.1\|WP_004113527.1\|980844_981345_-\|S-ribosylhomocysteine-lyase	unknown	unknown	gnl\|CDD\|179399
NZ_AP012332.1\|WP_009994175.1\|991176_991947_+\|type-III-pantothenate-kinase	unknown	unknown	gnl\|CDD\|237347

Protein	Function_ID	Function_description	E-value
NZ_AP012332.1\|WP_162861257.1\|995504_996257_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.66736e-144
NZ_AP012332.1\|WP_004113501.1\|996392_997385_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.3236e-68
NZ_AP012332.1\|WP_009993755.1\|973837_975088_+\|AGE-family-epimerase/isomerase	gnl\|CDD\|369267	pfam07221, GlcNAc_2-epim, N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase). This family contains a number of eukaryotic and bacterial N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) enzymes (EC:5.3.1.8) approximately 500 residues long. This converts N-acyl-D-glucosamine to N-acyl-D-mannosamine.	2.60179e-121
NZ_AP012332.1\|WP_009994174.1\|988960_990724_-\|glycoside-hydrolase-family-13-protein	gnl\|CDD\|200477	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins. Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_AP012332.1\|WP_013399623.1\|978756_980112_-\|alanine-racemase	gnl\|CDD\|143481	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. AR and other members of this family require dimer formation and the presence of the PLP cofactor for catalytic activity. Fungal ARs and eukaryotic serine racemases, which are fold types I and II PLP-dependent enzymes respectively, are excluded from this family.	1.12678e-134
NZ_AP012332.1\|WP_004113518.1\|987321_988257_+\|pyridoxal-5'-phosphate-synthase-lyase-subunit-PdxS	gnl\|CDD\|179769	PRK04180, PRK04180, pyridoxal 5'-phosphate synthase lyase subunit PdxS.	0
NZ_AP012332.1\|WP_009993756.1\|970285_973411_-\|alpha-mannosidase	gnl\|CDD\|212101	cd10789, GH38N_AMII_ER_cytosolic, N-terminal catalytic domain of endoplasmic reticulum(ER)/cytosolic class II alpha-mannosidases; glycoside hydrolase family 38 (GH38). The subfamily is represented by Saccharomyces cerevisiae vacuolar alpha-mannosidase Ams1, rat ER/cytosolic alpha-mannosidase Man2C1, and similar proteins. Members in this family share high sequence similarity. None of them have any classical signal sequence or membrane spanning domains, which are typical of sorting or targeting signals. Ams1 functions as a second resident vacuolar hydrolase in S. cerevisiae. It aids in recycling macromolecular components of the cell through hydrolysis of terminal, non-reducing alpha-d-mannose residues. Ams1 utilizes both the cytoplasm to vacuole targeting (Cvt, nutrient-rich conditions) and autophagic (starvation conditions) pathways for biosynthetic delivery to the vacuole. Man2C1is involved in oligosaccharide catabolism in both the ER and cytosol. It can catalyze the cobalt-dependent cleavage of alpha 1,2-, alpha 1,3-, and alpha 1,6-linked mannose residues. Members in this family are retaining glycosyl hydrolases of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl-enzyme complex. Two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst.	7.66748e-148
NZ_AP012332.1\|WP_004113500.1\|997545_998472_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270225	cd01004, PBP2_MidA_like, Mimosine binding domain of ABC-type transporter MidA and similar proteins; the type 2 periplasmic binding protein fold. This subgroup includes the periplasmic binding component of ABC transporter involved in uptake of mimosine MidA and its similar proteins. This periplasmic binding domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.20485e-77
NZ_AP012332.1\|WP_048653126.1\|983190_984036_-\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.27882e-51
NZ_AP012332.1\|WP_013399627.1\|984044_985013_-\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.22989e-73
NZ_AP012332.1\|WP_009993502.1\|981527_983201_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	4.77674e-150
NZ_AP012332.1\|WP_004113534.1\|977428_978712_-\|deoxyguanosinetriphosphate-triphosphohydrolase	gnl\|CDD\|235098	PRK03007, PRK03007, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional.	0
NZ_AP012332.1\|WP_009994176.1\|991986_993477_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.84331e-50
NZ_AP012332.1\|WP_004114934.1\|993488_995396_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_AP012332.1\|WP_009993754.1\|975266_977369_-\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NZ_AP012332.1\|WP_004113516.1\|988272_988866_+\|pyridoxal-5'-phosphate-synthase-glutaminase-subunit-PdxT	gnl\|CDD\|237411	PRK13525, PRK13525, pyridoxal 5'-phosphate synthase glutaminase subunit PdxT.	7.22002e-101
NZ_AP012332.1\|WP_004113520.1\|985220_986903_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173859	cd08494, PBP2_NikA_DppA_OppA_like_6, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.46197e-177
NZ_AP012332.1\|WP_004113527.1\|980844_981345_-\|S-ribosylhomocysteine-lyase	gnl\|CDD\|179399	PRK02260, PRK02260, S-ribosylhomocysteine lyase.	2.48112e-91
NZ_AP012332.1\|WP_009994175.1\|991176_991947_+\|type-III-pantothenate-kinase	gnl\|CDD\|237347	PRK13318, PRK13318, type III pantothenate kinase.	2.41751e-131

>NZ_AP012332.1|WP_013399627.1|984044_985013_-|ABC-transporter-permease
MKRMILRRITLFFVALLFISAIVFLALRVLPGDVAQVMAGLNAPDGKVEQLRHDLGLNKPLFVQYLEWIFGVFRGDFGVSMLTGRSVASTIAMRASITFPLIFLGLLIALAIGIPLGCLQVLHSGKASQVVARFCAITAGSVPALWGGMILIMIFGKGIGLVELFPTQGFPTDGWRDFGSAFLSLILPALTVGIIVGSGFMRYTAASLEQISNSDIALQAMACGMTKKQMIWRVGLRLALPQLVSVIGLTFAHMIMGVMVIENLFSLPGMGMGLVRDVGLRDLISVQGNLFMLSALFLLVGFAIDALHRLLDSRLSQDSSGE
>NZ_AP012332.1|WP_048653126.1|983190_984036_-|ABC-transporter-permease
MIKFLSRIWRGIIGKFVCIILCLWIFVAALSFVWTPYSLLETNGYQVWQKPSLNHWLGTDGTGADMLSWLMAGSRVEILLVISTIVIASVVGFVILSFTICRVQKIRSVSIMAVDALISIPTVLIALMLAVPLGASVLVIMLACGFGYGLNLARILRPSAVLVLKSNYVDCAISNGASRSYVLLKHVLPNILPIASVQLSLSAGTVILAESGLTYLGVGVPSGVPSWGRVLSTSVTLIHVYPLAALWPGLVVTLTVLALNLFGDVLRSVTNPANRESKNES
>NZ_AP012332.1|WP_009993502.1|981527_983201_-|ABC-transporter-ATP-binding-protein
MSLDIKGLSLSIGSSRILSDVSLNVKDGERVGLVGSSGSGKSMLLRAAIGLVPSNCKITGSCHVGNAQTVGANDSALANIRGKYAGVVFQQADRALNPVMSVSEQIALPLRLHYNLDEDDIQNRVKVMLEKVGLGANILHKRTFELSGGQMQRVGIATALITCPKLILADEPTTALDSVTQKDVVNMLTSLVDNMGASMLFVTHDFSVLSRAATRCYVLDSGRLVDSARVGELLENPKVRSTKQLVLAARALSLSKNDLSLDNNDLSLDCKSDLNKNDSSKDDCIFKAKNVHVVLGSSKTRVEALKGVDFNLRVGESLALIGGSGSGKTTLIRSLLGLQEISEGRIEYCGKVVETAKNAKKSSLKDSAYVNMRRQCSLVFQHPFAALDPRWTVRKSVSEPLEIWRKNMSSDSNTVDSNTVDSHVIDSKVDDVLNLVGLNPNVFGKRYPCELSGGQAQCVAIARALINNPRVLVADEPMSAIDVAERTRILDAFNVIRANRPNMACVFVSHDLGMIQHLASSVVVLKDGVVVESGNVSQILTNPKHSYTRELIDAATL
>NZ_AP012332.1|WP_004113527.1|980844_981345_-|S-ribosylhomocysteine-lyase
MSENQNNQPTPRPESFELDHTKVKAPYVRYIDTQKGPNGDVISNYDIRLTQPNQEAIPTGALHTIEHTIAVLLRQRIEGYIDCSPFGCRTGFHLLTWGTHSTEDVARALKESLEFIAYKATWEDVPATTIESCGNYRDHSLFGARQWCKDILDKGISSDPFERKIV
>NZ_AP012332.1|WP_013399624.1|980238_980784_-|GNAT-family-N-acetyltransferase
MCEIRLRKATLSDLKDIENIYERARVFMANNGNPHQWGDRFPLTSSVIEDIRLNRFNLLVDTDPDFGNERILAQFALCEGLDEVYAKIDGAWLDDVLPYVTIHRLASSGVKPKMARECLKWAKLNYSNVRIDTHPDNLIMQKVILREGFSKCGLVVIPDRAHSATRIAYQWLRSHNHVIRY
>NZ_AP012332.1|WP_013399623.1|978756_980112_-|alanine-racemase
MCKNSSIQAILQENYARALSTYPGQVIVDLKALRDNMRTLIERVSKDLQPGQKSPAVMGVVKADAYGHGLIPSALAALAGGATWLGTAQPYEALRLRACGIDSSRCRILTWLTSAPTSLFADLINADIDISVGSLDSIDAVALAAKSVGAAARIHVKVDTGFGRNGFTPAGFSDALEKLSEYSSQGLIEVIGQWSHLAVADCPDVPEFVSSTDRQIEQFHDFTRRMCEAGLEPKIRHLANTAATLNRPEIRFELVRPGIGLYGYEPDPVMGVPQTYDLRPAMTLQAQLGTVKSVEAGHGISYGRTYLTPDNTSTAIVPLGYADGILRAASGYDMQGSRHVNKPGGPVRVETNNGARILHVSGRVCMDQFIVDLKGSAKELGVKEGDTVRLFGPGRGIEYAEPTADDWAAAAGTISYEIMTGIGPRVPRLYKNAYEVLPKKDIKMLDEKSLI
>NZ_AP012332.1|WP_004113534.1|977428_978712_-|deoxyguanosinetriphosphate-triphosphohydrolase
MCNDVITSDNEVVGEYSLHDTERWASEPHHTRARTPFERDRARIIHSSALRRLGAKSQVLVAGSDDFARTRLTHTLEVAQIGRQIASMLGADPDVVDCACLAHDLGHPPFGHNGERALAQIASNIGGFEGNAQTLRLLTRLEPKVFRENGASAGVNLTRASLDAAVKYPWGFDEAKAHDKGERDLKFCVYPDDREVFDWLKSGSPRELKPMECQIMDLSDDIAYSVHDIEDAIVTGAFNTELVWDSSVADQVVQEAHNWYGSQWDADSLLAAFKRLRALNMFPDSYDGSRRSLAHLKNITSALIGRFASSVERATREKYGSGALIRYRANVVIPPETSYEIIVLKSLAVHFIIQPREREFYRREQKILTDLVEVFMSKSPRAHDAMEAVFISDWNTCSSEGERLRVAIDQVASLTDGSATALHAALC
>NZ_AP012332.1|WP_009993754.1|975266_977369_-|DNA-primase
MAGMIVKEDVERVRAAADLYDIVSATVTLKPSGTGTFVGLCPFHDEKTPSFSVRPGLGVWHCFGCGAGGDVFKYVEQKENIDFREAVELLADRYHVEVHYDQSQAGKDSAHAGSKRARLIEANEEAQRFFVSQINSKEAAPARSLLAGRNFTQAQCERFGCGYAPNSWDTLVRYLSNKGFTRQELLDAGLARQGQRGIYDYFRGRLTWPIRDSTGRTLGFGARKLYDDDSISAKYINTPDTVLYRKTQVLYGIDIAKSNIVKKRQVVIVEGYTDVMACHLAGVDTAVATCGTAFGAEHAKIIRRLIADDSLGAIQLVGPVKVEGQKVSSRIVFTFDGDAAGQKAALHAFGLDSAFLTQTFVAVADNNLDPCDLRIQRGDEAVRSLIARANPLYDFVIDTVIRKFDTSFATGQMGAVKAVAPLVAQIRDRSLLDLYTRKAVRNIGVDLDVMRREVESNRRRLHVIDDDAYSKSYSSIVSADSRVFDQRSQSMNEAAIKTAMLRSAYKNQSYYKVDDSVFMCEQQFMAVLMQSPLAFNSQLFAQLTLNNFITPVFRTLFQAFVAAGGLPTSNVSQGLWLHIITKAAGPMLEGAINELSVMPLPLSLSKGLSSASSLNSSAAYDYSGESAKGGPSDFLRVPSEEEQKYANELLIKLLDVGFMRKIGAFKVRMSKLPDGQEKLTLLGQITKMESARKDLQSQIL
>NZ_AP012332.1|WP_009993755.1|973837_975088_+|AGE-family-epimerase/isomerase
MQDFETTKYTFDTQANRIFMAEQTKQLLDFAKNFPTPIGGSGWLNTDGTLDKTRGVQTWITARMTHVYSIGEMLGYKEANQLVERGLDGLLGPLHDNEHGGWYPQVSWNKEPEKDKICYTHAFVILAASSALLAGHERAKQLLEDALKVFDKYFWNNEIGLTVDTWDTSFNKLDSYRGLNANMHTTEAFLAVADSTGDEKYRERAKRIISHVINWASNNNWRIPEHFNDQWQADLEYNKDKKDDQFKPYGATPGHGIEWSRLILQWAYSYYKEDCKQRREALNAAENLFNQALKDGWNADGQPGIVYTTDWNGKPIVHDRMHWTLAEAINTSSTLYRITKNKQYATWYKEFCKYLDHSVIDHSNGSWFHQLDDKNNVLNTVWTGKSDAYHAFQSTLIPFIDTTCSIASAIYREQLD
>NZ_AP012332.1|WP_009993756.1|970285_973411_-|alpha-mannosidase
MFLLPEQQLNRCTRVMQQRLYPHINTVLLHCKIRAYEIAGEPISSNEFFSKLKRNDIVFHSFNVPSVWGTTWGTTWFEISGSIDLSKVKGCKVELNVDLGWIENLFPGFQAEGLVYNVDGRVIKAVNPCNHWVPLIDEHNNRSISIDENGNFTLYLEAADNPFVEGPTPFSPTDLGECATGNTECQYMLKYVDVTVFNRNIFDYYMDLETVSSLMRELNDDNPRYWKLAKALQRSLNAYDEHDSSTVQNARNMLTNVLSQPAAASSLRHIAVGHAHIDSAWQWPVRETHRKVARTISNVLALMDEDPDFTYAMSSAQQYEWLENEHPDLFERMKNRIKEGRFIPVGGMWVESDVIMPCGESLIRQMTFGKRYFKEHLGVDPHGIWLPDSFGYTGALPQLARRAGFDWFLTQKISWNDTTKFPHHSFLWEGIDGSRILAHFPPSNTYASSVSMHELVYSQRNFLDKDLSDHAILLYGFGDGGGGPTREMTARIRRDRNLEGAPRVDFGTPDELFEKIRKDIVDDSNGDTPVFKGELYLELHRKTLTSQQDMKRYCRMEESLLRVAEYLVVLARVYAPEYRFNNDELTRIWKTLLLNQFHDILPGSAIAWVHRQAREEYARDISCLRKIISDIANAIVKANSTVNAVNARENVKLLTYTGKNEVAWNLYQCSESCKNNTTTVKHKNDGGVILNNGVLSVTIERDGTVSSVEDIKFNRELIPSGYRMAQYEILKDEPYQWDAWDIERDAFMRNRKIDDSSIVDVKELLSGGVSVEILACKKDVKIQTSIILEPCVKRLDFHAQVDWNAKEQFLKVDMPTSVCSDKAQYECQYGLVERPIVKNTRSDDAKFESCTHRFVRIEDSSYAVAVANSSTYGADTAPIGDYSSSYGTMLRLSLLSAPLYPDPNTDQGKHEFTWSFIADANMDSVLSTADFLNSPIIDMLPEVDPLFTIHRNSGLIALDWVKLADDCSGDIILRIHEPSGGYANGQIKLNKILRYSSIEEVDLMEMPVLHGMPIALHNNNDALNVELRPFQLCSLRIRIAS
>NZ_AP012332.1|WP_004113520.1|985220_986903_-|ABC-transporter-substrate-binding-protein
MDNKEPKDGAYNNDATDKFYGQENAEQSQFSSSTDASLNAASKRGYKTNKRGLGKFWLVSVAIVVIAVVSAIIATFTGPQKNPASQTSSTQVSNKTVSIGLKLAPTNLDIRNQSGSSLEQLLIGNVYEGLVARNTKNQVVPSLAKSWEISKDGLKYTFHMRKGVVFSNKHRLTAKDAEWSFNELVAKKYRGSNMVGKVESAKAKDDYTFEIKLKEPNAKLLWALCSRAGLVFDKLANYDAKTQAVGSGPYLVEKFVPNDRVVLKANPCYKGINKPRTSKVVVRYFVDDVAAVDALSSGAVQALAPISGQLAKTFKADAKRYVVKAGNSTDKFVLAMNMNGERTKDKRVRQAIRYAIDHKQIIASRGGTDALLGGPIPSLDPGYEDLTNIYTHDVKRAKSLMKEAGFSESNPLHLSLTYPNIYGTQLGDQLRSQLKKIGIDLKVNIVEFTTWLHDVYNNKNYDLSMVDHNESHDFGQWADPKYYYGYNNKQVQDLYAKAMLCANTKESNKLLAKAARIVSKDAPADWLLNYKVVTAKVKNLEGMPFDINQVLLPLYNLRLS
>NZ_AP012332.1|WP_004113518.1|987321_988257_+|pyridoxal-5'-phosphate-synthase-lyase-subunit-PdxS
MAENLNTTVTVNESSDPQNNGSQDRTALNRQLAQMLKGGVIMDVTTPEQARIAEDSGACAVMALERIPADIRAAGGVSRMSDPAMIHGIQEAVSIPVMAKCRIGHFVEAQVLEAIEIDYIDESEVLSPADDVYHINKRDFAVPFVCGAKDLGEALRRINEGASMIRTKGEPGTGDVIQAVRHMRMMNSAIRKLTSMREDELFEEAKTLRVPFDLVKYVAQNGKLPVVNFAAGGVATPADAALMMQLGAEGVFVGSGIFKSGDPAKRAAAIVKAVTNYKDAKMIAKLSENLGEAMVGINEQEIKLLMANRGE
>NZ_AP012332.1|WP_004113516.1|988272_988866_+|pyridoxal-5'-phosphate-synthase-glutaminase-subunit-PdxT
MANSPINTNNCSHTVAVLAVQGAFLEHRLMLEKLGAHVIELRQARDLEQSFDRLVLPGGESTVQSKLLKEQNMLEPLRERIASGMPVLGTCAGLILLAKNVEGNEVSGFGTLDVTVKRNAYGRQLGSFHYESEFGNLGKVPMTFIRAPYIVQVGSNAETLATVDGNVVAARQGNQIGTAFHPELDEDTRIHQLFLSL
>NZ_AP012332.1|WP_009994174.1|988960_990724_-|glycoside-hydrolase-family-13-protein
MINRQAILHRPLSQYAYSTAEYCLTIRLRAAKNNLCSCVLHYGNRVDLTPLDQFCTLKMEKIASDDYFDYYEANISSDLDRVCYYFEMQDADERLYLYADTIATDFPEDRTEVYQFPFIRREEISDVPNWLKEAVVYNIFPDSFADSKRGISCEAKDYFDEKTGQTLHTRLGGTIRGIIENLDYIEDLGFNCLYLNPIFKAAEYHRYDLLDYYHVCPNLGTDDDFRELVSEVHNRGMHIIIDGVFNHSSWYFFAFDDVVKNGENSRYKDWFYGLKFPVKRPEDGKRPSYTCFAYERKMPKLNTSNPEVRDYFMDVCRYWLEDFDVDGWRLDVANEVDKDFWRAFRSVAKKTKKDSVLIAEIWENSERWLQGDMFDSTMNYEFRKVCRDFFAFGKINAREFNSRFVDMLLRYPFPIVQGQLNLLDSHDVSRFRSLCAQSSSEACDFSTADKRFRLAELCLLTSVGAPSVFYGDELGVIGFEECDYRAPMPWSNPVSDNRDLFRELIKLRKNNDCFIHGNFRVLDYDERGKFVFARETDSKRVVVALNAFNESNDSFSALPDCKPIISYNYDAQNQSLGAFGYAIFEVK
>NZ_AP012332.1|WP_009994175.1|991176_991947_+|type-III-pantothenate-kinase
MLLAVDIGNTNIVLGFLENGKIVGTYRMTTKANHTSDEYGIMITQFLNLSGFSVNDVEDVIVASVVPKVMHSFRASIVKFLQIDPMIVGPGVKTGVNIRIDEPRSLGADCLADCVGAFYEYGGPVLVIDFGTATTYNYVDKSGAITCGLICTGISAAAAALWDNTAQLPEVEISRPKSVLTKSTRPAMQAGLYYSFLGGIERTIEQFKIEINEPFKVVATGGLGRLFEKDVETIDYYDPNLIFKGMYEIYRRTIGC
>NZ_AP012332.1|WP_009994176.1|991986_993477_-|sugar-ABC-transporter-substrate-binding-protein
MCARSPQKSRKQDFGCFVMRNINRNINRVFVRNIKRVISAITCVFIVAFCASCGSVDSRTKITVWSWEPSMKRIAADFEKQNPDIRVSVKDTSGYNNLNSAIQDGYGMPDVAQLEYHALPQYAVSGQLLDITNRVQGTQTFYTPGTWSSVQLGGRVYGLPMDSGPLAWFYNQDVFNQAGVDVTQIHTWKDYLHAARKLKNIGVYIAADSGDASFYNAMIWLAGGRPFITSHDGKTVTVRLSKDKGTKDFTKFWQSMIDEDLVDTRLATWTPAWKSAVGSGSVASVFAGAWMTSLLMHDIPGGAGLWRVARVPTMNGNNDNAQMGGSALSVLQSSRKPEAAMRFVNFVCHDQTGIKERVLSGAFPADVVTLRDKSFLNKTMVRDSRGIDVPYFGGQQFNRIFADAANHVDTGYKYLPFEVYSRSDFRFTVGLAYDWNRKSRARLTVQSMIDAGIKQDDGKDFQLPDDPGPKISLKDGINLWKKDLKEYGYNQGFVVR
>NZ_AP012332.1|WP_004114934.1|993488_995396_-|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGYAGFGTVCSKPLEVCLNGLERLEYRGYDSSGVALAAPGMDSICVRKKAGRLAVLRKDIEADPMPEASVAIGHTRWATNGAPCDLNAHPHVSADGKIALIHNGIIENAISLKEQMQKEGIEFSSQTDTEVAAKALGKIANQIIEETGKPDLFEAIRRVAKILKGAFTLLAVDVRQPNIVAAVRHDSPLVVGVSNNEYFLGSDVAAFVQYTDKVLEVGQDQAVLIGDIEGNKKAQLRLTDFDGNEIENPSCFTVDWDASAVEKGGWDSFMDKEIHEDPHAVADTLRGRFDAKGNIILDEVRISQDILRSIDKIIVVACGTASYAGLVAKYAIEHWVRVPVEVELAHEFRYRDPILTHRTLVVAISQSGETMDTLMALRHAREQGSRVLAICNTQGSSIPRESDAVLYTHAGPEIAVASTKAFVAQIVAAYMLGLYLAQVKGTMYRDEIQQIVSQLKEMPDKIQNVLDTQADSIMQAAKKTIDAKSFLFLGRHVGYPVALEGALKLKEIAYTFTEGFAAGELKHGPIALVDKGEPVVVIVPSSRGRDVLHAKVISGIEEVKARGAFTIAVAEDGDPDAERYADIVFWRPKCPTLLSPLVDVVALQLFAMNMAKLKGYDVDKPRNLAKSVTVE
>NZ_AP012332.1|WP_162861257.1|995504_996257_-|ATP-binding-cassette-domain-containing-protein
MKDLHKSFGNLQVLKGVDMTVNPGSVTVILGPSGSGKSTLLRLINQLEKITSGKITIYGERIGVKTVIHNGKEALQALNDNEIAAQRAKLGMVFQRFNLFPHMTAIENVMESPVHVLHMDKTAARDLAIKELERVGMADRLDHYPSQLSGGQQQRVAIARALAMKPEIMLFDEPTSALDPELVGEVLNVMRDLANDGMTMIVVTHEIGFAREVADQVVFMDGGKVVECGTSGIIDCPQTERFKDFLHHVL
>NZ_AP012332.1|WP_004113501.1|996392_997385_-|amino-acid-ABC-transporter-permease
MFNNASKKLSQNSDGDRILPVKKPGPIIAGIIVAIIACSLLYSIVTNPRFEWNVVGIYLISDNVLTGIAWTLILTFLSMIIAIVLAIGLAMMRKSVNPVLRAVSWFFIWFFRGTPVYTQLVFWGMFAVLVPKLSMGIPFTSVEFFSIDSNVVMTSLNAAVIGLSLNEAAYLSEIVRAGLEAVDAGQVEAAQALGMGRSLTMRRVVLPQAMRIIVPPLGNETIGMLKTTSLVLAVPFTLELQFATNAVANRIYKPIPLLIVASIWYLIITSILMVFQVMLEKHFGKGFEAKDIVNNAQINSNAAKRGDNAIKANSDAVKGRNNATMLGFNA
>NZ_AP012332.1|WP_004113500.1|997545_998472_-|ABC-transporter-substrate-binding-protein
MLKSNKIFKSIKPIAAIATLALIGCTCACGPADSKAADPDVARSYDVSKVQKDDEIAKLVPESVAKTGELTVGVNVSYAPAEFFAADGKTPVGYEIDFSKALAKLMGLKAKIMHAQFDSIIPAIGSKYNVGISGFTVNAERMKSVDFVTYANAGLSFEVRKGNPTKVDPKNLCGKKVTLETGTVGEPIMEEAKKQCKANNDKPLEIMSFKEQTDATTALLSGRADVMYADTPVAGYAAIKNNGKLEILESSNDAEPMGAAVKKGDAKMLKLIKAAIDKLMKNGVYNDILKKWGVENVAIKEAQVNPEV

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Crispr_ID: NZ_AP012332_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP012332_5

1331196-1331302

Orphan

Consensus_repeat	Method
TAAAGTCCAGTGGACTTTATGTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP012332_5

>merge|NZ_AP012332|5|1331196-1331302|CRISPRCasFinder
TAAAGTCCAGTGGACTTTATGTGCCAAATCAGCCGAGCGGCTACTAATAGCCGCGAGGAATAGAGCGCTGAGCCGATCAAACGTAAAGTCCAGTGGACTTTACGTGC

>NZ_AP012332|5|4|1331196-1331302|CRISPRCasFinder
TAAAGTCCAGTGGACTTTATGTGC	CAAATCAGCCGAGCGGCTACTAATAGCCGCGAGGAATAGAGCGCTGAGCCGATCAAACG
TAAAGTCCAGTGGACTTTACGTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP012332.1\|WP_004138616.1\|1316710_1317472_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP012332.1\|WP_013399741.1\|1335636_1339203_-\|DNA-directed-RNA-polymerase-subunit-beta	unknown	unknown	gnl\|CDD\|234749
NZ_AP012332.1\|WP_009993870.1\|1325759_1326908_-\|class-C-sortase	unknown	unknown	gnl\|CDD\|320676
NZ_AP012332.1\|WP_004114457.1\|1347467_1347836_-\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
NZ_AP012332.1\|WP_013399735.1\|1306451_1307123_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|173926
NZ_AP012332.1\|WP_009994365.1\|1342998_1345599_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|227321
NZ_AP012332.1\|WP_009993840.1\|1300020_1303368_-\|GA-module-containing-protein	unknown	unknown	gnl\|CDD\|223496
NZ_AP012332.1\|WP_009993950.1\|1307210_1311383_-\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|224000
NZ_AP012332.1\|WP_004114465.1\|1346575_1347430_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_AP012332.1\|WP_048653133.1\|1317584_1325615_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275090
NZ_AP012332.1\|WP_048653134.1\|1329571_1331017_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NZ_AP012332.1\|WP_004114467.1\|1345852_1346536_-\|ribonuclease-HII	unknown	unknown	gnl\|CDD\|234574
NZ_AP012332.1\|WP_009993839.1\|1294802_1299284_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224117
NZ_AP012332.1\|WP_009993949.1\|1311375_1316292_-\|PD-(D/E)XK-nuclease-family-protein	unknown	unknown	gnl\|CDD\|378929
NZ_AP012332.1\|WP_013399742.1\|1339402_1340119_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP012332.1\|WP_004573794.1\|1342277_1343015_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|377857
NZ_AP012332.1\|WP_048653135.1\|1331529_1335549_-\|DNA-directed-RNA-polymerase-subunit-beta'	unknown	unknown	gnl\|CDD\|234794
NZ_AP012332.1\|WP_004116653.1\|1340173_1340857_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|349967
NZ_AP012332.1\|WP_004114476.1\|1340868_1341816_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_AP012332.1\|WP_013399737.1\|1327113_1328970_-\|SpaH/EbpB-family-LPXTG-anchored-major-pilin	unknown	unknown	gnl\|CDD\|380024

Protein	Function_ID	Function_description	E-value
NZ_AP012332.1\|WP_009994365.1\|1342998_1345599_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|227321	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	5.69235e-12
NZ_AP012332.1\|WP_013399741.1\|1335636_1339203_-\|DNA-directed-RNA-polymerase-subunit-beta	gnl\|CDD\|234749	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed.	0
NZ_AP012332.1\|WP_009993870.1\|1325759_1326908_-\|class-C-sortase	gnl\|CDD\|320676	cd05827, Sortase_C, Sortase domain found in class C sortases. Class C sortases are membrane-bound cysteine transpeptidases broadly distributed in Gram-positive bacteria (mainly present in Firmicutes and Actinobacteria). They function as pilin polymerases responsible for the assembly of pili, which are multi-subunit hair-like fibres that extend from the cell surface to promote microbial adhesion and biofilm formation. First, one or more class C sortases form the long thin shaft of the pilus through linking together pilin subunits via isopeptide bonds. The base of the pilus is then anchored to the cell wall by a housekeeping sortase or, in some cases, the class C sortase itself. Depending upon the organism both the number and type of sortase enzymes involved varies, and in some cases, accessory factors appear to be needed. In three-component spaA pilus from Corynebacterium diphtheriae, the prototypical class C sortase (named Cd-SrtA) catalyzes polymerization of the SpaA-type pilus, consisting of the shaft pilin SpaA, tip pilin SpaC and minor pilin SpaB. The pilus shaft is then attached to the cell wall by a housekeeping class E sortase, Cd-SrtF. In the absence of Cd-SrtF, Cd-SrtA attaches the pilus to the cell wall, albeit at a reduced rate. Cd-SrtA can recognize two distinct sorting signals (LPLTG in SpaA and SpaC, and LAFTG in SpaB) and it can employ lysine residues that originate from different proteins (either Lys190 within the pilin motif of SpaA or Lys139 in SpaB). However, Cd-SrtA cannot be able to polymerize the major pilin subunit SpaH, even though it contains LPLTG motif. In two-component pili of prototypical Bacillus cereus, the class C sortase (named Bc-SrtD) cleaves related sorting signals within a major pilin protein BcpA (LPVTG) and a minor tip pilin BcpB (IPNTG), and catalyzes a transpeptidation that joins the threonine residues in each signal to the side-chain of Lys162 in BcpA (located within a pilin motif). Unlike the SpaA pilus in C. diphtheriae, in B. cereus Bc-SrtD is unable to covalently attach the pilus to the cell wall without the help of the housekeeping sortase.	1.88256e-74
NZ_AP012332.1\|WP_013399735.1\|1306451_1307123_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|173926	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransferase, Myristoyl-CoA: protein N-myristoyltransferase, and Acyl-homoserinelactone synthase which have a similar catalytic mechanism but differ in types of acyl groups transferred. Leucyl/phenylalanyl-tRNA-protein transferase and FemXAB nonribosomal peptidyltransferases which catalyze similar peptidyltransferase reactions are also included.	3.68118e-05
NZ_AP012332.1\|WP_009993840.1\|1300020_1303368_-\|GA-module-containing-protein	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	9.27005e-08
NZ_AP012332.1\|WP_009993950.1\|1307210_1311383_-\|ATP-dependent-helicase	gnl\|CDD\|224000	COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair].	1.16868e-42
NZ_AP012332.1\|WP_004114465.1\|1346575_1347430_-\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	2.08249e-43
NZ_AP012332.1\|WP_048653133.1\|1317584_1325615_-\|hypothetical-protein	gnl\|CDD\|275090	TIGR04264, hypothetical_protein_SAO11_2114, hyperosmolarity resistance protein Ebh, N-terminal domain. Staphylococcal protein Ebh (extracellular matrix-binding protein homolog) is a giant protein, sometimes over 10,000 amino acids long as reported. This model describes a non-repetitive amino-terminal domain of about 2400 amino acids.	1.86949e-14
NZ_AP012332.1\|WP_048653134.1\|1329571_1331017_+\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.56814e-27
NZ_AP012332.1\|WP_004114467.1\|1345852_1346536_-\|ribonuclease-HII	gnl\|CDD\|234574	PRK00015, rnhB, ribonuclease HII; Validated.	1.60849e-72
NZ_AP012332.1\|WP_009993839.1\|1294802_1299284_+\|hypothetical-protein	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	1.37869e-16
NZ_AP012332.1\|WP_009993949.1\|1311375_1316292_-\|PD-(D/E)XK-nuclease-family-protein	gnl\|CDD\|378929	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	2.00212e-06
NZ_AP012332.1\|WP_004114457.1\|1347467_1347836_-\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	3.87235e-62
NZ_AP012332.1\|WP_004573794.1\|1342277_1343015_-\|HNH-endonuclease	gnl\|CDD\|377857	pfam07510, DUF1524, Protein of unknown function (DUF1524). This family of uncharacterized proteins contain a conserved HXXP motif. A similar motif is seen in protein families in the His-Me finger endonuclease superfamily which suggests this family of proteins may also act as endonucleases.	2.59897e-20
NZ_AP012332.1\|WP_048653135.1\|1331529_1335549_-\|DNA-directed-RNA-polymerase-subunit-beta'	gnl\|CDD\|234794	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional.	0
NZ_AP012332.1\|WP_004116653.1\|1340173_1340857_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	gnl\|CDD\|349967	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL. tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	8.0752e-68
NZ_AP012332.1\|WP_004114476.1\|1340868_1341816_-\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.58973e-17
NZ_AP012332.1\|WP_013399737.1\|1327113_1328970_-\|SpaH/EbpB-family-LPXTG-anchored-major-pilin	gnl\|CDD\|380024	pfam17802, SpaA, Prealbumin-like fold domain. This entry contains a prealbumin-like domain from a wide variety of bacterial surface proteins. This entry corresponds to domain 1 and domain 3 of SpaA from Corynebacterium diphtheriae. Some members of this family contain an isopeptide bond.	6.06578e-06

>NZ_AP012332.1|WP_048653134.1|1329571_1331017_+|ATP-binding-protein
MIYNLNQSTSIATYTERKFPRKLYSQMLNWKNSSNGKTALLIEGPRRVGKSTIVKEFAQNEYESYILVDFYTASPEVKQLFEDLSDLNYIFLQLQLTYKTSLKERKSCIIFDEVQLCPKARQAIKALVNDGRYDYIETGSLISIHKNVKNILIPSEERKLKMHPMDYEEFKWALGDNTTIPLLKKLYDSKKPIGQAACRKMLRDFRLYMLVGGMPQAVESYIETNDFSVVDRVKRDILSLYEDDFRKIDPTGKISAIFDSIPAQLMSNTSRYHVSSVLAGNRANTVLEQLAQLEDSGTVLISHHTNDPNSGMSQHKDLSKFKLFLADTGLFVTLAFKDKSFTSNDIYMRLLNDKLQANLGYVYENIVAQTLSTHGHKLYYHTFMDGDARLIADDTNVEIDNHDNRHSKCNNRNYEVDFLIADKNKIVPIEVKSSGYKTHASLDSFARKFSSRIAREILIYTKDYQHNGMLEYIPIVMTEFL
>NZ_AP012332.1|WP_013399737.1|1327113_1328970_-|SpaH/EbpB-family-LPXTG-anchored-major-pilin
MRLNTNSLKRTVAVLAAVCTLGTCCIAGSIAYAQGEAKGVDTANINQGKKSATSIIIHKYQGPETSERSDGTVKTLKDKKPVKGVKFTLWRVKKKNANSSDDIDLSKSSDWKKIKKLEDLVATTTASKKTASEFMTGANAEFEKYTDTGDGVNKANGKTVETGDSGEAKFENLAMGLYYIEETDTSGAQLQEDGTWKKVSITKRVSPFFVTTPLPNPKDKANPWIYAVNVYPKNDTSKERPTKTVSSLSRKDLTKDNETTITWKIAIPLTAPKNGNKYEKIGFKDKLETGLTYDKISSAKLVTYTDSGQKDTSANDVPLDATTHYTATNTNGLVSFSLTSTESTGGLKKAYDEYSKHTTDKKVVKLEVELVTKVADTVKDIANVANTYVDDNKTGNGDGNDPCTPTKKDGDCGGDDIPNDTAHFGTLTVNKVTEEIGANGDKKKLPLNDAKFDVYEVTDTSATANDTFTVSDGKIKKNNQDAGTKLNNVSLKTKVKTDGGAKTEGTDSVRLFVYNSKETNPAVTTKLYCVVETEAPAGYLLDSTPKCVALKADTAADATKNNTKEIENKKATGLDKILAALPMTGARGLVLLTAFGIVGLGGTLFYIITRRRKEQEEA
>NZ_AP012332.1|WP_009993870.1|1325759_1326908_-|class-C-sortase
MLRFLFLNRNVAVKHKKRDKRKWRFSKSSIVPALLLTASFASLLYPHAAMWLSQYHMSEVAAEYAKLITHAIPAPHEQLARAREYNRKLSVGAIYEANTNIPTSHGETSDVSQNYWDQLKANDDGLMARLRIKKIDLDLPVYHGTQDDTLLKGLGHLRGTSLPVGGLGTRSVITGHRGLASAEMFTRLDEIDKGDSFTVEVFDEILTYKVIEKIVVNPDETKKIAAVPGKDLVTLITCTPLGINTQRILVTGERVIPTPAADKSLLGKKPDVPRFPWWLVGSIASLSVVGGYIYWAGLPIVKKKKKKNDKQNGDDRNNGDDHSDANGDDQTNDTLWLGIYGDQNKQMYRDSEEVRRISQESFESIIDGFAQGKRPKASKLKN
>NZ_AP012332.1|WP_048653133.1|1317584_1325615_-|hypothetical-protein
MRSIWTVLLSVVVWIGRLAQQATKAALIFLISVAMWLPMCLTANTAVAADSGTAANAAISGNSGKKHESNKSGDKPKSAAKPNAADNADISAPSQPPVFIDGQNNAFAKLKNGVSVNNNLANNAAKGDASDKGLIDSAMMSAAKGMAKQGASYTSFGMDRSNEIFNNTERSSNGDKMGYDRSRMEFRPGCNRNYARSECITDDGDETGHRASKGADMERGDNPWREDSGYDQPQGIYTNNDPNFTPYPRGTYLQKRIRNLAYLKNKNGVDSLNRIQLDDVHDYIFMKRTPKRDGNGYIWDVLVNMGARIHGAAKALTYFVVPKDQSLDTSNGQYDQYVERLHFDAKNRGCAKDWVNPNGFCIDEGTRKEPLNDGETLDKAWYRIGNSNAIENVGVFEGGTQRDRDDSNRKLGLCDSYGFDCYHSGNYGFPSEGEHKAGTRLPPDGTQKFNDTYIKLIDNLFSELRGTDKEPRAKIFALRNQFDESKSPYSYHIHYTTSNNGKYGKLSTSYYGAGSYYGDTWHGPLSRYGLGDPYSRNPKYSLSNYRIGSGHTTYEYTTLYQQWYGIPNLVDINVPHYSFLRGTHLGPFTSNNGQLLAHTKNIDVTSLLFQPTRQEVCDKDTEAQCGNNTVWAKGQLSLLPKYNASENKYARGNRWWRKPLDPNTNINTKDSKFGIHDLTVQYWNDKLQMGSAKKVKYDIIGQADVFRPLQTQEWQDNPKYRSSKDSLGKAADYVNYLDNKGKIYEFAHALNPRLYMPDSHSSNNLENYSKYSDSDDSVYYGSIKDGKIPGDAHGLEYPLNDSYLYSQDSGANAAIKDRAIYSVEWTNADGSLKKSNTLKDAETKVAVRVPVVNVVDPCKGDDDKAADKAADKSAQADAAAKNKDSQECKLRPLNDTKRYIWKLYDAPSGKTVDQKLTGDEKAKYAKLAKDYFSNPVKEEYATPTNPNDENRIMLQFGEQPEVKPVYVAAKYAKITYWDESTGVLPLVFTHVDDEKPTIDVKVSINGGEPRSVPENGMKISVGSRIRFLVTGHDDKHVYMGTKEKVKDNNNKTDIQSTSEQFKATAFNKYDQSKPVGVDSATDQSGYVTTSETNGPELKSNDSGVKEFTFHAWDDAGNKVQKKIKLIITGDEFTAPNVRWQKQPNGRYVGKVNLLTKSKQVAVLAVRIWKRGEPKQKPVGETDTFRIFSDCPNKSCHGIMLTRQAGEDWQQLNDDKPDHSYFTNFMPYEKDITFDPKTGEITIPEHLAEIGSRIYAGVGNNASQLQTTLNASSDPLPLDMTWPDDGMVQVNPYELNPSEKQGLIDRIKQKNPRLFQYRKDEIGWSKDETKTLGGTSDKYSCKDNTKQYKICLSVTPDTKNTAQGKSGSEKTFKVVKATGTGNDTKDDQNQETVLDPKQKKITRFVNIRADYDWSYGSGKINGRNTDDGFKWYGRDENSSQYLVYRFNINQGDNKNFNTNEALSLFQGTKKSRWLRNQIQPSLYPLNTNDADSTNKTTIEKLWGGYNRMPNRGDGIGYARKVNNARGEWANIVDLVNYSNLGGGQTIFTNNITDKDNFVQPQGYVMPGGEDYNQQDSGANIGAAILKKSGNKYPLHAQLYIFNGNPWRELEARDEGDKDHTPNVINVWFVPVDKNKPWISVKDANDPSKKLLGECNPTKTNANSCGTVTTIDMNKTDITKQSGLFNVVDLLALDDDFNVADKTTHVSKALKDTLSIDIEAEGATDPKTKKAPRVRFVTGGNTNKELLRGFIEKWRGNDSKNSPTFKMIAQVTDDSGNKSDEAVVGKFKFNWTVAKAPVVRAYDGNHYNDLSGSGVWLHDWEGASAPNYSNKVSVISGNNATRLVVYFARAKKAAAKTGNTVSLRNAGANAIYSRSADATTGINDDSDISESLALCRAKTGDRWSLCDGYMFPEGLSTNDLNQTAFGGDKTAILFPSGFLAPGSVVRARNRTGSYGPWSDMPGVKSENLDELANDANETTSVNNDLKKLSGSENVSQAQNGANSAKEEDMRGVQSVDSLSSKRSSVCRLESKAPKVWSEPSDCVFFPVVVNKKVVQVHPLLLNDSEKRAVNHVLRNGNAGGKWLDSGDNDSLDNATNTRSGVSVDNSNASLDDDDDTLAANESKVTWKRGNYIAPQKQDDGRNNYSNVGSEQDSFILTRGWRRRTVTPEPRRNIVTRFAKLRSDSNSAADYTITWDKKKPYIGERSSDPGFELVGAPGHQSLVYRYNASTKDKRIDLNQLQNALTLKPNVPSGMSEDEFKKIQPSLRVVSGTDKKNGEGSKEVTVQLPDGKTRVDKFGNGSGFFTLNDEYINIPDLVLGNGNYGGGLNVSNTNGMNYSTLGNNYLNMSPQDITVNKWCEGGDTANPNCTSVNSESFNLEKVLGGHKNIETADDIKGTSKKAIAPVYALSLSNGWAMNSLKNTYGYNAQTHFKNVASAPTLLPVYVVPVDVIKPKAESIGSLKSSTMAKPYEVSANDIKFTFTGNPDTNGKVGGKELLVDASDDFDSRDVVEKNLQVCVRWMNNNKPQDKDCTPILKRDNSGNASVDSDKLQQMLVTHGNTAVYAVYAQTKDKSDNKSVGYDESKETAPIIGYIKITGINVSPIPLPFTGGNAAITYTFLFGILMALFIASGAFGRRGWLASVLSGNGFSGELTYSKHCNVSAEPLRCRRLFGLIYKNRH
>NZ_AP012332.1|WP_004138616.1|1316710_1317472_-|hypothetical-protein
MSETLVLARKDYVTRTMIRIIAIVSSIYGMAMSWDSMALTYFTNLSNLMICVALLGSLILDTRSALKSKSDEQSERAGAWVDAKPNAWYIFKFMMTISIAVTFTLYLCFLAPTNKLGFVGAYMNNGCSSLCVHFITPLLAIFDFVLFDYKYKSSRAHVYFATIPPLTYVAYAVCLSEFAGVRWGEHAMAAPYNFLNYKAPAGWFGFAPNTFNSTTLGVGVVYLLAIFTLIFIGIGIAFLAIKNARATRLLSQQ
>NZ_AP012332.1|WP_009993949.1|1311375_1316292_-|PD-(D/E)XK-nuclease-family-protein
MCTEDSALDAVQSLLDGSLKNTSERHTNVLLVFGAPNSGKSSFALNALLCGLRANWKNTQDSKYDEAVQLLLKYAIRTDFAIAAAQNRATAARMSNYVISNLGVSYQSRPVGTLSAFAFSLISARNKLFGMPSPKLLNGAEQDAILREIVRMHVNHVLQGDSGDCKICSLFNDYFSGEYSKSLQDGDYKSHDSWIYVISQLQNSDNLMDSFDSTDYRNAHNAYNAQNTQDLPINSAFIHQLRDMLARLDEMGIVSESAELQILNSLNFQSHLQSGSSSDLLATLQADLQSSSIANRLRVQWNLAFALRSQYADCVRKKYPNAFRLDSSKLLANGVQILNEIFKSLYDDNTEESSVACDYSADSSKDFSKELFALKCSLPRLLVVDDFHDVTLAGLAFLESLSSLGVRIVLTANPDESVQSFRGSYPDYVVEAAQHGVMQAAVLKICDYRIDGVAESYNDPNDPNDSNDYVDSSNTSDLLKQNSRSIPLSLFSSRVSLSIPSLMPTPTPIARRAWKMANIQGAFPIEKIESNSQETENSSVSGDLYRTAREEMDCVIWQIKRAHLDHKIPWKNMAVIAHDNATVRAFGERLRKDGVPVRYSSVTRALREEPFIKALFALIELAQFSQNSVDNLAKDVSLGTRTISSIARFVKSRIKTIMDSPLIDSDNYNCADLSAVEALMRSIVSLSDMVTSKENSPLSVLIRQWDLLQNQLLNKTDSKNDGLDANFNFDNRIFDSNPNPNSTRFSVDSCYLLIIKALIDSCAIDKSMDCDDFSVDSCDSDLLDKSPADKSPANQTQSDQTTEIFSVLQKMRPNSVHLRTLMRVFKITSKLSKILKQDLAKIQNSETNEASYILGQAWNLCNCAKKWQIQALKNNDEGRLANDRLDAAMRLFEYANSFNYIDSRADYYESSVAGDYYAAAPTITQFIDQVRQMEIEADSLASVAPAPDSVTLTTPSGSVGSRWDYVWIPAVQQRVWPNTAARSTMFGSETLVNMVLNNRIFGSVNLKSNNSKKSSLLDEYANPTGICVNDRQAIFTGEQRSFLMAITRANRHLFISAVNSDDCVPSDFLYYYLPEIYWRNADGSSEYTDFCEDFAVMDADPRGLVASARTQIARAIYESENSHNLDENPTVKDALTALNLLKNNGVDSANPENWDFIRKNYGSKTEEKSIENESKSNLVTLSPSMVDSLWSCPVCCLLERKFAGPTRGGTAAQFGTLIHETARWASQDEHLDNEYLREKYPQLQAFAAIKNNKVSEFPDFDFSFESISALQKKAIEDVANTMIEHYYSICPSDSNISDVKDRYRFIKNDLNVRRALYTIAQYFVGSLTGSNYPIMAKKDEDGVVTDILPALERSKSAKPTIADVDLGNLEHAYCECNINATFGFDDILNAYNRASKTQTSLEDLYSIMGFLVGGWQNGASSDLRVRIQGRIDRMEIRKLNDNTEQIRLIDYKTGKVPKTQQVFNDLQLICYQLGIVFCNENVEDVKQLLKFKHTKIARSALFHVVYKDSPAQDNGVAENICQPSLFDADGALSTKGLISRYRYADDNRLYELPDIDAQNPADGVSQNAWSDFVNLPMRTKWSLMMISRVFFAASAVKSTSFVVEPKADHKNHCRCLDVCPGCAGKVDTVYEMIEGKNE
>NZ_AP012332.1|WP_009993950.1|1307210_1311383_-|ATP-dependent-helicase
MNNNNVNAVKSTPNSAPSLEQKNVIEAPINQDVLIVAGAGSGKTYTMTRRVIHLIKSKVPPESILGLTFTNKAAAELLSRVSAEVSASGANGAKSFLKPEVMTYDAFFQSIVRRYGLLVGFNQNTMPLSDAGAMEIIKSIIGKYLDNPQNHNKNLNKLYDFDTLCSDVMKLCAEISCSMIGVDAQGNTCSSVPQAVQKIREWNNEFAEHLKNVIGNKKVESPLPAKSPAIPKYKKVKKTAGMSAEDVTKTSSEKFKQACKKYEKYWDDSCLQLCVNLYNSCVKRDILLDLVLQFDAEKKRVNMAQFSDFTIAAYYLVTHFPSICAQYRNQYSQVLLDEYQDTSTTQAMLINTLFHAENDAENDAENGGDNDGDFAASKRTHVMAVGDPFQAIYSFRGASTGAFCKFEQDFNINKQNKYSLTVTRRNSLFILKVANALTEPMRGENGDNSTQNASRRFSSIDDREVQVETLKPKEDASNGTIAALFMPSQAEEIDAVVRFAKKIVEKYGENPLEPQLAILFRSKANMPKYAEKLESAGIRTSIVGYSSLIEKPAVKDVLSLLKVVQDHSDSNSLMRLLATPRFALSTDDLGALAAIANSANTEYLYNIYSSAGLLEADLPKSQWDSAVRNLRNKANSGEISGQVINIYGGVYLADLIMRDFSTKNDQWVNQMQQKLSIGGFDAVKRLSKILHNVEGIQRNSLTNVMQAAVQALNVDIDTAVGSALKYKDFSNQIMLDDMRSVLDSLNAIVETYIQEMGEWQDVSLRGLISWIDSAKNLDSQSGSSVSSSSQTEPAQVVLMTVHQSKGLQWPAVAVVGLNEGAFPSNQGDSLKVDDNGQASARIPIEFGASVPCALRVDANILPHFPHTVTRAEAMHPEKAMQSLDSVQKIFDEIKPDRIKALCDFAEAVKEVDSCDSSDSGDFLSEETRRVYNAYKSQQNVDSMPFTQSEERGIQLHMDERHLMYVALTRAKFAALLTGSATSGDSAQSGRKRSASVFLNESINAIKNLNGAIKVQRCDSNEENKTESKESEEYEEQDVFGFIAGDDAQEFAAEFSKIAPQSDSSSLEPTLKWPCTLSSTIEKSLIESAKLVENCDSDLESVYDSSINTNPKSLLYKAKIFIQDADLTSQNDCDYSLEELAEKVNKISSGSRLNVTSLQKISKIAQNAKTSVYNNLLACIRPIPSIPSIDANLGTKFHAWAQQFVDSATPSESCECYEWKNIVKHGISLEKTPENRQKVIDDFNQSCKDSDSQSCALNQWKQRLIESRWAKRVPLAAEMPILMQIDNTEFANRIINGTLDAVFAGGLDASDTTKLYTIVDWKTGKRPKSAEDIRLKLEQLDWYRMLLARATNVDLRCIDATLYYVSEARAENREIHALCKTRDEILSEASF
>NZ_AP012332.1|WP_013399735.1|1306451_1307123_-|GNAT-family-N-acetyltransferase
MTVEFRPVKINDIDAIIEEYERTWGIANAVGADASRNLSRRFVLHYLEPSTFGTVATINGKFMGLLLARVYGDKVLFKQVKKMLEEQEAKMAIKGDSSHAKALDSAIGMGQIERKLEAMSHINDLTQAELELFIVSPDARGHGVGGGLWKRTMQHLRSRGVNRYFLHTDTACDVSFYDYHGLRRDATWAKKDHEKYANRVKDLVEDLYIYSGEPFVNRTKRFD
>NZ_AP012332.1|WP_009993840.1|1300020_1303368_-|GA-module-containing-protein
MNNEKALRELIKKIADYQKPKPVEYTYNFEKLTLDHEGDLTDDDYKKIVVEQFLKKNYTTTDWSKLANAYSKSATVLSGNNANTYNLTPAAGTSGLNIYTGDKQAGGVTSVGIDSSGDLVVRGWKAGSTDSHAEELIRIKKADLFTPKPKDQTSTPSADDLKKFKEQAKELINRNPKLTDKQKEDYKKQIENATTKEQIQNILKQANDQAGKNNVKPEDIKKKEKEEKEKRENEQKEKDKKEREKKQEEQTTKDKKSANDTIDGLSDLTQDEKDKLKEKLNGKSGDTSKSGAKTPEEVQQIVNEAQARNAARKAIKDELPFLDHGTGAEGKTDTTHADDAALNELLGTKSGKDSTLTDLETALAKTNPAATAEEIKNALDTAKRQNAINEENAKNSGLAKLDALLQQLTDAENGLNETQKEAVKQKVEAAKTAINGAKDTVNKATKPSDIKTAVDGVKIEDALKEINTQVTNAQQNNKQQQENENKDALANEKKEQIARINASNLSDADKQKAIDDINNAKKLGDPTGIADRALKAKKIADALAAIDKLGHLNNAQKQAYKDIINGTAAKNHVDDKGKDTGVDDIDDALANAINTDNAMARLEELKVIADKFAKGDAYKNSNDANKKKAFDGASTAAGAVLDKAKGDPKDADQVNELYKDLLKAMQDLDNTVKGAGVKTDALAAEIDSDKNLKPSETDPKTPGDSVYNTSSKDKKEAFDKALKDAEAALQTANSDNEDAKKPTSTPLTPDQEAQKQKAVDDALDKLIKARLALDGVNTKPLQDEIDKNNKVKNSDKYTYSTKEKQTAFDTALSEANELIKKLTGAADQQAQPGQGTQQPDLSTKEAKQKALDAALKKLQDAAKALDGTKPIEPTPTPSPLPTPGDGTGAGTDNTGSGNAGSGNAGSGNAGSGSEAGYGVNDNAPTIVDKGELNIQIDSAETDSKPGNAGAGNANAGSATGAQGGAGTSSGSGMGTGTAGAANAGVDNKAVNNAVENAPEVKQADAAVKQAAATLDEALAQAKRVAADPHATQAQVDAAAVKLADARKALADAQANAAKVRAAVRSRVIKGMRSRGNAGVAAGADVATAGLMATMIAAIGGAFVTRRMRAMHANRD
>NZ_AP012332.1|WP_009993839.1|1294802_1299284_+|hypothetical-protein
MNAKLAVAISLGASSLALFGMAGVANAETVTPPNSGTNPQPVVQAPQSGNANPSGNSGNENPQPGSTNQGGNSGQNQPGSTPAGQQVGGNSEGTKPEEKKNEAAEQAIKDAKSKSEDAQKDVTTADNEVKQANEKATEAKNTAEEAQNGLNAANKSKDKADKEKTEADNNLNAANNEVNAKEKVAEEAAGDVAAKDKALKDEQAKQTAAEEAKKKAENEQAAAEEEKKTAENNVTDKNTALEKAKGTLESKQDEKNDYDKKLKEAQEKLENEKKEQARLDDIADRAKTKQEQADLAVENNKKEQQEKQNKIDALNNPTTTTNEEVERLKREASEAEQKAKDAKEDEDKKDKEAKNKQNDLDNAGKNLNSAEDALEKNPDAKKLSDTEKAVKDAKNAADEAAKNASTTTANFDGFLDYVIKTYKNSTSKEDKALLADAQRAKQILNGERVEIMKQVQNGDKTENVLDRVEVPMWYKDLVKLGKVGGADSLQNMKEAATYYEALNKLRKEDSDKNSASTEDKATLGAVNVRLSLIAESIVNSFYSGANHDHAINHPGYKSSEVMKTNPYNATENLAWGNYDGDSKDHKNQEYGSCHITANGNTSCSVDSEKYNALSGWYTVEKERYDKAVEGTFVTGEKGSEVTHKISDAGKKVLKEHRYDLGRYMRQNPDTKLFESADDNSKLKGIFLESVGHYTNFASKDITAGGFAESDLSLQEVTTTTTVNGKSTVSKEDVVGDVAVWHGSNESSITIAKYKQLLANYESSLGESAKAELQENDAINKLNAEANKANYDLFVKKYELRKLHYDLNMSDANNLDAADAAKPEVGLQDQEKNALDVLKQKAQELVAYYSQTDVTWAATQETVNRLLSQAKSEVQKIESKITNITNSISTADSKKSEVEKLKKAVTNANTAFEQAKTDVQEANKALTQAQETANRLNTEATSAQQKYKEAEQKAQTAAQQTSEERNKQIQNLQGELDQLKEKAKTLEQTAKQAKTAADAAKNDAQLQKNKIDGELTQAVTQAKQKVDQAQQAVQDAIKAKDSAVEALAAANKNVTELTEKISGFAAAIQKHDNEIKAAKTKVADAQGYLDTATQKQTSAETELKNAKQTAKEKAEAVKTAEQNVEKAIAAISAAKESVKQAKITVASAQSALAAAKTKVTQAQTKVESYKTKFAAAVAALPEQVRVTYQANFAAVTGNFTTMLATLNSCSTTLSSATSTLQKSAESLSKAVPEPAPEPPDPVPPAPVPPAPVPVPTPPTPPVVPAPPVVPEHHNEGGSNTNTGSGTQEQNTESGNANQNTGSTSATQNNTSSSTSNNTSSSESFENYYNQYLAGYANNLFGNEQLGFHAAIPAAQSQSANDANGANGANAQNANGVAANNVTGAAHANTLSASSANRIAAALASGAKAAAKDLAKAQDAAKDSAAKSESNKDSKSESSESKDESENAQASGGAQDGAQSAYNNTTLKVVAALAAVVAGIAAIGGGTYFARHRRA
>NZ_AP012332.1|WP_048653135.1|1331529_1335549_-|DNA-directed-RNA-polymerase-subunit-beta'
MLDVNAFDKLRIGLATADDIRSWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWECACGKYKRVRFKGIVCERCGVEVTRSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDIAPKDLEKVIYFAAYMVTKVDEEQRHQDLPDLQDEFDTEIGNLRKRRDNEIEARAKKVEEDLHELEESGEAKGNAKSKLRAGAEREMAAIRTRYDEQIQRLNAVFDRFKGLRAGDMEGDVDLWREMEDRYGDYFEGCMGAEAIKKRLQDFDLKSAAVELREEIDNGTGQRKARALKRLKVVNAFLTTGNKPEAMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIELGAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDQGFAQNMKSAKRLVDRGDSEVWGVLEEVISEHPVLLNRAPTLHSLGIQAFEPILVEGKAIHLPPLACAAFNADFDGDQMAVHLPLSAEAQAEARSLMMASDNILKPADGHTVTMPSQDMILGLYYLSTVIDGAKGQGRIFSSLAEAQMALDKHEIDMQAKVLIRVPEDFVLPKDWEPGELKVVDPEPGSPDVVHEERFKDGTVLFATSYGRVLFNGTLPEDYPFVNQQVPKGVLSKIVDDIATRYSTAQVAASLDALKDLGFTRAPWSGVTMAFSDIVLPSNRESIAQDYENQAAKINSQYDMGLLTDEERRQELINLWTECTDKVADAMRENFHDDNNVNIMVQSGARGNWMQIRQIAGMRGLVANPKGEIIPRPVKSNYRDGLSVLEYFISQHGARKGLADTALRTAESGYLTRRLVDVSQEVIVREEDCGTKRGLMMKIADRDENGNLTLVKAADGGPYSRLLAADVLDPADGTTVLAKCGDALSMDVLRDLVAHGVEEVKARSVLTCESKRGVCAKCYGWSLATSSLVDVGEAVGIVAAQSIGEPGTQLTLRSFHSGGVASASDITQGLPRVTELFEARTPKGEAPIAEFPGVVKVEDTDHGRQVTLTPDDTTVEPIVYPVTRRAPMLVKDGDHVEVGTQLIEGSVDPKKILRILGPRAAQVNIVEEVHNVYRSQGVDIHDKHIEVIVHQMLRRITVIDSGDTNLLPGELVDQAKFREANLEAVKNGGKPAAGRPELMGITKASLATDSWLSAASFQETTRVLTEAALSQKEDDLKGLKENVIIGKLIPAGTGLARYRNADVFADPEVRDAVYPNLGLGGADGTPSNFGESNMGDVDFSNIDFGDMQLGDEFNPDDFLDDQGGQGDYDDDLN
>NZ_AP012332.1|WP_013399741.1|1335636_1339203_-|DNA-directed-RNA-polymerase-subunit-beta
MAAEQATTNTTKVIARADEHSIKLHKASDRVNFGSICEPIDVPYLLGVQTDSFDWLIGSERWKKRVEEDEANGTHTVPHVSGLEEVFQEISPIENFAETMSLTFSDPYFEEPRHTVLECKEKDYTYSAPLYVNAEFENGETGEIKSQTVFMGDFPLQTPHGTFIIGGTERVIVSQLVRSPGVYFDRTQDRTSDKDVFGAKIIPSRGAWLEFEIDKRDVLGVRVDRKRTQSAIVFLMAIGMTKPEIAEAFQGYPLVLDALEKEPIDTQNDALTDLYRKIRPADTATPDAGRNLLESFYFNTKRYDLARVGRYKINRKLGLEADYNDRSLNREDIIATIKYLVTLHSGEKTFPGKRDGEDVQLRVDVDDIDHFGNRRIRQVGELVQNQIRTGLSRMERVVRERMTTQDAEAITPQSLINIRPVNATIKEFFGTSQLSQFMDQNNPLAGVTNKRRLSALGPGGLSRDRASMEVRDVHPSHFGRMCPIESPEGPNIGLIGSLATFGRINPFGFIETPYRKVVNGHVTNEVEYMTADREAEHVIAQANQELDENGNFVGTQALARVDEEEAVDVPVSTVDYMDVSPRQMVSLGASLIPFLEHDEGHRALMGTNMQRQAVPLIKSERPLVGTGSEWRAAVDSGDVILSEKPGVVTYVSADIIRVMNDDGTQSSYKLSKFQRSNQTTCYNQVPLIKDGERVEAGTVLADGPATDKGELALGKNLLVAFMPWNGYNYEDAIIISQRLVQDDTLSSIHIEEYEIDARETKLGAEEITRDLPNVGEDAIANLDERGIIRIGAEVEAGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLRVPHGETGTVIAVKEITREDAEDDGDELPNGVNQMIRVYIAQHRKITQGDKLSGRHGNKGVISRILPEEDMPFLADGTPVDIMLNPLGVPSRMNLGQVLELHLGWIAHAGWDINLDPDLEAAWKKYVPEGAEHGDPCTPVATPVFDGVRPETLKGLLSTTLADRDGNKLVGSDGKATLFDGRTGEPFPKPISVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLHEMMTTKSDDVDGRVRVYGAIVKGDNLPPAGIPESFKVLLKEMQSLSLNVEVLNSEGVAIDMKDEDDDPVSSSEDLGFNIGARPDSSAKEDQVIQEPEYQ
>NZ_AP012332.1|WP_013399742.1|1339402_1340119_-|hypothetical-protein
MVTMPVLKRKPKRKISAARRRMYIRRRIIVCVGLLAVLVFCIFCIISVFKGIAAIGTAISKHSDVTLSKQLVPDPRPVGIIKKCSAKDVRIELTSASQSVPMGGSVEFTARIVHEGDDSCRIDASDGRMVLTIGDSVSADKSDKSDKSREKQEKQQKIEPQWRSDVCGIPLKPLLMAKGDSYEKKIVWSTDATVGTPTGKDCLDDADLPKVSRGTYIAQIAHKDVSGLQSNPVVISVR
>NZ_AP012332.1|WP_004116653.1|1340173_1340857_-|tRNA-(cytidine(34)-2'-O)-methyltransferase
MQVTGKEDKSKEDKSMQDAQNPVNRVEQMYEYGYRKSNYGPDELVTDAHGNPISVMDAMLSAQDASTAQTQTPHLCFYSPRIPGNTGSAIRLCAVTGTILHLVEPLGFNLQDTKLRRAGLDYHDMAHVVMHPNFENLVESMPNSRIIAFTANATKLYTDIEYKPNDILLFGPEPGDIPDPMDIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLGFEGGK
>NZ_AP012332.1|WP_004114476.1|1340868_1341816_-|EamA-family-transporter
MDVGFVKNIQKIKPKKPNPAVDHSPRTMMIGIILTILGGALWGTNATVSKILMSQYLVSPLQIACVRQLAAGVLFVIVASIVNRKQLVDALSTKKSWPMLVVTGIVCVLLTQVAYLFTIDWTNSGTATVLQSLNLLFVLVYVCLRSKRTPTLRENIGVLLAFAGTALMATGGNFSSLSLPLMGLLWGLADAASTAALAIMPVKLIAKWGNLTVNGITFIIAGLIMMPFVKPWQTMPPLDLRAYLLFTFTIVGGTFGAYWMFLAGVMRVGSVRGTLLGASEPVMAAITAVVFTGAVFSWADFAGFALIFIMMILLR
>NZ_AP012332.1|WP_004573794.1|1342277_1343015_-|HNH-endonuclease
MQYDRNTHYSSNPISKRITSFIWLISLAILIGIVIGLVLPKINHDVGEITGEYVADGDAAALLNKLKVAKSHPSGYNRSVFGYRTTDVDKNGCDVREDVLARDLKQVRFKYSGSCKVASGLLHDPYTGLNINFVRGRKTSALVQIDHVVALENAWQSGAWKWSHAKRLKFGNDMLNLLAVQGAANQEKGSASAAYWLPSNKSFRCDYVARQIAVKYKYDLSVTSAEKRSMASILHGCSAQKLPNS
>NZ_AP012332.1|WP_009994365.1|1342998_1345599_-|ABC-transporter-ATP-binding-protein
MIGRFFAFVPGVKHLVVLRAACLAISSLANIGFVYVCVGILSPVLIPAKYTGKSLLSSVELTSYLISLVGILIVKYIAFHQSCTISTEIGTRVSMKLRPKMLRSMLSLSSSKKWSKGYSSICVNDDVAWVQRWYGLLLPQIIAAFPMPFAVSVAMFSINSYVATICVFASIFSTLALVSALADVRVLWRCLCVFLTYLMTGVAIISTVWLLSVKSVGLPAAMLTLPLLMLSVDPIRRVANCMHIKNRAVLGLNNISDLFKSVASNKVHSSNLDSVESSASADSIDFSDNKKSLSIPDGASNVSLHVRCNFTENNKPLRASFNISSGKLNVMPKEYYELFTNNVLNGVVFSDKSDVALSYSDRYGFSEVDVESPFVVSDFGDISGNSTYVSLNNENPGAIADLVTIVRSNSHLFSATLRENLLMASSNATTTSMWQALRTAHVDGVVYADYNGLDLRVDNIQVENKQDIFRRIIMARALIRRTPVYIFDYSSSDISSDEAKNLCDILRHVAKKATILVFLPDDNYVSKADNLVNVSVYHNSHYTSSSSISSYVENFADGSVDKANKVDKYAKSFDENSNKNFNNAKHEGLLKDLSHESKSTISSLKKAFFAILSAFSTAINIVCAVLIPVCTFAAMFAIANRPLFGLAMQEYVLIVSVCACLRCITLVTSFAGVDLHHAHLHKAGLSMSVGMALSIIPAIVLLCYFDIQIAIFAVVICALIVFIIPGLFRLRLRSFIKKVHSEQKMVELEVDDVELGIDEVLAFRQGEHCVKRVVDSMRKLSQQRVRLSRKVGRMQAILMSVALIGIANTIMLVSNTIHPIVTKNPQWNVVYAVMAIIVLISLIQQVLDVVIRRIPWVVDINHAVRS
>NZ_AP012332.1|WP_004114467.1|1345852_1346536_-|ribonuclease-HII
MAAVPSFNFEQDLLKSGFDWVIGLDEVGRGSLAGPVMVGAALFGADKINSGYFPDGLADSKLINAHKREGLLEPLENWCDAFAVGSCTNREIDEWGISYALGVAAIRAISDVQNSMRYKLENAHIAAILDGPFNYIGKVSGTFDAPSIDFPVKVHTLVKADQKCASVSAASVIAKVTRDSLMTSLSDDPKYKIYDWAHNKGYGSKSHRAAILEYGPSDLHRISWHLS
>NZ_AP012332.1|WP_004114465.1|1346575_1347430_-|signal-peptidase-I
MSAEDLQNSDGHIVNVAGHGLNPSPVPPEPEERPSLTSGFSAKRARHGKIKGNHISGYQDSDYDSSKSQSKVRTRKLFKTSWKELVAWYLVPILVVIFLRVFILGVYFIPSGSMLDTIHIGDYVVTSKLTPRLFPLNRGDIVVFEDPANWLQGENSRGGIVSGKDLIKRLIGLPGDTVECKGDGDPILVNGVPVLESAYIKPGVSPSSFPFKVKVKPGHVFVLGDNRANSADSRYHKNDGDDGLVPISKVEGVAFMRFWPLNRMGIFENHSDAFDDVRNKSDAK
>NZ_AP012332.1|WP_004114457.1|1347467_1347836_-|50S-ribosomal-protein-L19
MVNAVEAFDAKHLKSAEEIPAFRPGDTVDVNVKIQEGNNTRIQTFTGVVIARKGAGVRETFVVRKVSFGTGVERRFPLHSPAIDSIKLVRSGRVRRAKLYYLRALRGKAARIAERRDNSAAK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP012332_1	1.1\|177413\|27\|NZ_AP012332\|CRISPRCasFinder	177413-177439	27	NZ_CP019982	Pediococcus inopinatus strain DSM 20285 plasmid pLDW-12, complete sequence	19108-19134	4	0.852
NZ_AP012332_1	1.1\|177413\|27\|NZ_AP012332\|CRISPRCasFinder	177413-177439	27	NZ_CP017997	Lactobacillus crustorum strain MN047 plasmid unnamed1, complete sequence	18763-18789	4	0.852
NZ_AP012332_3	3.12\|698000\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698000-698032	33	NZ_CP024793	Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence	189674-189706	6	0.818
NZ_AP012332_3	3.27\|698915\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698915-698947	33	NC_041878	Pectobacterium phage CBB, complete genome	294908-294940	6	0.818
NZ_AP012332_3	3.9\|697817\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	697817-697849	33	CP037991	Bacillus mycoides strain TH26 plasmid unnamed1, complete sequence	95503-95535	7	0.788
NZ_AP012332_4	4.1\|985103\|30\|NZ_AP012332\|CRISPRCasFinder	985103-985132	30	NZ_CP049914	Vibrio sp. HDW18 plasmid p_unnamed1, complete sequence	537966-537995	7	0.767
NZ_AP012332_3	3.9\|697817\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	697817-697849	33	NZ_CP007767	Campylobacter peloridis LMG 23910 plasmid pPEL1, complete sequence	30355-30387	8	0.758
NZ_AP012332_3	3.9\|697817\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	697817-697849	33	NZ_CP044261	Campylobacter armoricus strain CA639 plasmid pCA639-1, complete sequence	29040-29072	8	0.758
NZ_AP012332_3	3.9\|697817\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	697817-697849	33	NC_012040	Campylobacter lari RM2100 plasmid pCL2100, complete sequence	25641-25673	8	0.758
NZ_AP012332_3	3.9\|697817\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	697817-697849	33	CP013001	Bacillus thuringiensis strain XL6 plasmid, complete sequence	313523-313555	8	0.758
NZ_AP012332_3	3.16\|698244\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698244-698276	33	KU686197	Synechococcus phage S-CAM3 isolate 0808SB25, complete genome	72113-72145	8	0.758
NZ_AP012332_3	3.16\|698244\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698244-698276	33	KU686199	Synechococcus phage S-CAM3 isolate 1010CC42, complete genome	72099-72131	8	0.758
NZ_AP012332_3	3.16\|698244\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698244-698276	33	KU686198	Synechococcus phage S-CAM3 isolate 0910TB04, complete genome	72105-72137	8	0.758
NZ_AP012332_3	3.27\|698915\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698915-698947	33	MN693202	Marine virus AFVG_25M396, complete genome	16746-16778	8	0.758
NZ_AP012332_3	3.27\|698915\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698915-698947	33	MN693175	Marine virus AFVG_25M140, complete genome	15916-15948	8	0.758
NZ_AP012332_3	3.27\|698915\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698915-698947	33	MN693603	Marine virus AFVG_25M138, complete genome	20894-20926	8	0.758
NZ_AP012332_2	2.1\|279112\|36\|NZ_AP012332\|PILER-CR	279112-279147	36	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	201448-201483	9	0.75
NZ_AP012332_3	3.9\|697817\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	697817-697849	33	NZ_CP007625	Bacillus pseudomycoides strain 219298 plasmid unnamed, complete sequence	36248-36280	9	0.727
NZ_AP012332_3	3.9\|697817\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	697817-697849	33	NZ_CP009650	Bacillus pseudomycoides strain BTZ plasmid pBTZ_1, complete sequence	191518-191550	9	0.727
NZ_AP012332_3	3.15\|698183\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698183-698215	33	NZ_CP045351	Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence	344065-344097	9	0.727
NZ_AP012332_3	3.19\|698427\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698427-698459	33	MN694387	Marine virus AFVG_250M329, complete genome	26222-26254	9	0.727
NZ_AP012332_3	3.19\|698427\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698427-698459	33	MN693994	Marine virus AFVG_250M330, complete genome	26085-26117	9	0.727
NZ_AP012332_3	3.19\|698427\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698427-698459	33	MN694465	Marine virus AFVG_250M1200, complete genome	27024-27056	9	0.727
NZ_AP012332_3	3.19\|698427\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698427-698459	33	MN694767	Marine virus AFVG_250M328, complete genome	26230-26262	9	0.727
NZ_AP012332_3	3.19\|698427\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698427-698459	33	MN694500	Marine virus AFVG_250M1198, complete genome	27064-27096	9	0.727
NZ_AP012332_3	3.19\|698427\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698427-698459	33	MN694373	Marine virus AFVG_250M164, complete genome	26406-26438	9	0.727
NZ_AP012332_3	3.19\|698427\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698427-698459	33	MN694400	Marine virus AFVG_250M1011, complete genome	26764-26796	9	0.727
NZ_AP012332_3	3.19\|698427\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698427-698459	33	MN694490	Marine virus AFVG_250M148, complete genome	27065-27097	9	0.727
NZ_AP012332_3	3.19\|698427\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698427-698459	33	MN693851	Marine virus AFVG_250M123, complete genome	26749-26781	9	0.727
NZ_AP012332_3	3.19\|698427\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698427-698459	33	MN693612	Marine virus AFVG_250M85, complete genome	27370-27402	9	0.727
NZ_AP012332_3	3.19\|698427\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698427-698459	33	MN694262	Marine virus AFVG_250M733, complete genome	27159-27191	9	0.727
NZ_AP012332_3	3.19\|698427\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698427-698459	33	MT601271	Bacillus phage vB_BsuM-Goe10, complete genome	78348-78380	9	0.727
NZ_AP012332_3	3.19\|698427\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698427-698459	33	KY368639	Bacillus phage vB_BsuM-Goe2, complete genome	76292-76324	9	0.727
NZ_AP012332_3	3.19\|698427\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698427-698459	33	KF669649	Bacillus phage CampHawk, complete genome	76951-76983	9	0.727
NZ_AP012332_3	3.19\|698427\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698427-698459	33	MN693857	Marine virus AFVG_250M1199, complete genome	27070-27102	9	0.727
NZ_AP012332_3	3.19\|698427\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698427-698459	33	NC_011421	Bacillus phage SPO1, complete genome	76065-76097	9	0.727
NZ_AP012332_3	3.19\|698427\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698427-698459	33	MN693690	Marine virus AFVG_250M149, complete genome	14454-14486	9	0.727
NZ_AP012332_3	3.19\|698427\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698427-698459	33	MN694569	Marine virus AFVG_250M103, complete genome	16321-16353	9	0.727
NZ_AP012332_3	3.19\|698427\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698427-698459	33	MN694581	Marine virus AFVG_250M102, complete genome	16318-16350	9	0.727
NZ_AP012332_3	3.19\|698427\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698427-698459	33	MN694308	Marine virus AFVG_250M150, complete genome	14456-14488	9	0.727
NZ_AP012332_3	3.19\|698427\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698427-698459	33	MH153807	Rhodococcus phage Peregrin, complete genome	43544-43576	9	0.727
NZ_AP012332_3	3.22\|698610\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698610-698642	33	NZ_CP004860	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence	278571-278603	9	0.727
NZ_AP012332_3	3.22\|698610\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698610-698642	33	NZ_CP007616	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence	99851-99883	9	0.727
NZ_AP012332_3	3.27\|698915\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698915-698947	33	MN693463	Marine virus AFVG_25M283, complete genome	15471-15503	9	0.727
NZ_AP012332_3	3.27\|698915\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698915-698947	33	MN693331	Marine virus AFVG_25M281, complete genome	21040-21072	9	0.727
NZ_AP012332_3	3.27\|698915\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698915-698947	33	MN693334	Marine virus AFVG_25M282, complete genome	21030-21062	9	0.727
NZ_AP012332_3	3.27\|698915\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698915-698947	33	MN693110	Marine virus AFVG_25M284, complete genome	21056-21088	9	0.727
NZ_AP012332_3	3.27\|698915\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698915-698947	33	MH319721	Marine virus AG-345-D19 Ga0172267_102 genomic sequence	816-848	9	0.727
NZ_AP012332_3	3.27\|698915\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698915-698947	33	KX229736	Campylobacter phage PC5, complete genome	88077-88109	9	0.727
NZ_AP012332_3	3.27\|698915\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698915-698947	33	NC_015386	Treponema succinifaciens DSM 2489 plasmid pTRESU01, complete sequence	69412-69444	9	0.727
NZ_AP012332_4	4.1\|985103\|30\|NZ_AP012332\|CRISPRCasFinder	985103-985132	30	NZ_CP041349	Komagataeibacter xylinus strain CGMCC 17276 plasmid pA, complete sequence	64565-64594	9	0.7
NZ_AP012332_2	2.1\|279112\|36\|NZ_AP012332\|PILER-CR	279112-279147	36	EU826470	Mycobacterium phage Solon, complete genome	29066-29101	10	0.722
NZ_AP012332_3	3.25\|698793\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698793-698825	33	NZ_CP014942	Rhodococcus sp. BH4 plasmid, complete sequence	503522-503554	10	0.697
NZ_AP012332_2	2.1\|279112\|36\|NZ_AP012332\|PILER-CR	279112-279147	36	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	1095429-1095464	11	0.694
NZ_AP012332_3	3.12\|698000\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698000-698032	33	NC_048652	Bacillus phage vB_BsuM-Goe3, complete genome	86022-86054	11	0.667
NZ_AP012332_3	3.12\|698000\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698000-698032	33	MN043730	Bacillus phage vB_BveM-Goe7, complete genome	88078-88110	11	0.667
NZ_AP012332_3	3.13\|698061\|33\|NZ_AP012332\|CRISPRCasFinder,CRT,PILER-CR	698061-698093	33	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	919574-919606	11	0.667

1. spacer 1.1|177413|27|NZ_AP012332|CRISPRCasFinder matches to NZ_CP019982 (Pediococcus inopinatus strain DSM 20285 plasmid pLDW-12, complete sequence) position: , mismatch: 4, identity: 0.852

gacatttgtaacgttttttgactgatt	CRISPR spacer
aacatttataacgttttttgactaatc	Protospacer
.******.***************.**.

2. spacer 1.1|177413|27|NZ_AP012332|CRISPRCasFinder matches to NZ_CP017997 (Lactobacillus crustorum strain MN047 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.852

gacatttgtaacgttttttgactgatt	CRISPR spacer
aacatttataacgttttttgactaatc	Protospacer
.******.***************.**.

3. spacer 3.12|698000|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024793 (Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence) position: , mismatch: 6, identity: 0.818

cactcttgtagatgctgtgcttgag---cggcttat	CRISPR spacer
cactcttgtagatgcttggcttgagaatcggtt---	Protospacer
****************  *******   ***.*

4. spacer 3.27|698915|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to NC_041878 (Pectobacterium phage CBB, complete genome) position: , mismatch: 6, identity: 0.818

-tgtcaagtgtaccatcttttaattcttgtgcta	CRISPR spacer
gtgacca-tgtaccatcttttaatgcttttgcga	Protospacer
 ** * * **************** *** *** *

5. spacer 3.9|697817|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to CP037991 (Bacillus mycoides strain TH26 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.788

tatcaatttaagagcgaaaagaaa---agtttttat	CRISPR spacer
catcaatttaagaacgaaaataaaatgagcttt---	Protospacer
.************.****** ***   **.***

6. spacer 4.1|985103|30|NZ_AP012332|CRISPRCasFinder matches to NZ_CP049914 (Vibrio sp. HDW18 plasmid p_unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

tttccgctttttgttgctctacacaccatt	CRISPR spacer
gctgcgctttttgttggtctacccaccaag	Protospacer
 .* ************ ***** *****

7. spacer 3.9|697817|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007767 (Campylobacter peloridis LMG 23910 plasmid pPEL1, complete sequence) position: , mismatch: 8, identity: 0.758

tatcaatttaagagcgaaaagaaaagtttttat	CRISPR spacer
ttttgcattatgagccaaaagaaaagtttttac	Protospacer
* *..  *** **** ****************.

8. spacer 3.9|697817|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044261 (Campylobacter armoricus strain CA639 plasmid pCA639-1, complete sequence) position: , mismatch: 8, identity: 0.758

tatcaatttaagagcgaaaagaaaagtttttat	CRISPR spacer
ttttgcattatgagccaaaagaaaagtttttac	Protospacer
* *..  *** **** ****************.

9. spacer 3.9|697817|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to NC_012040 (Campylobacter lari RM2100 plasmid pCL2100, complete sequence) position: , mismatch: 8, identity: 0.758

tatcaatttaagagcgaaaagaaaagtttttat	CRISPR spacer
ttttgcattatgagccaaaagaaaagtttttac	Protospacer
* *..  *** **** ****************.

10. spacer 3.9|697817|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to CP013001 (Bacillus thuringiensis strain XL6 plasmid, complete sequence) position: , mismatch: 8, identity: 0.758

tatcaatttaagagcgaaaagaaaa-gtttttat	CRISPR spacer
catcaacttaagagcgaaaacaaaataaatcta-	Protospacer
.*****.************* **** .  *.**

11. spacer 3.16|698244|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to KU686197 (Synechococcus phage S-CAM3 isolate 0808SB25, complete genome) position: , mismatch: 8, identity: 0.758

tattttccttattttgagctaataataaattta	CRISPR spacer
tgtatgtgctattttgagataatagtaaattta	Protospacer
*.* * . .********* *****.********

12. spacer 3.16|698244|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to KU686199 (Synechococcus phage S-CAM3 isolate 1010CC42, complete genome) position: , mismatch: 8, identity: 0.758

tattttccttattttgagctaataataaattta	CRISPR spacer
tgtatgtgctattttgagataatagtaaattta	Protospacer
*.* * . .********* *****.********

13. spacer 3.16|698244|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to KU686198 (Synechococcus phage S-CAM3 isolate 0910TB04, complete genome) position: , mismatch: 8, identity: 0.758

tattttccttattttgagctaataataaattta	CRISPR spacer
tgtatgtgctattttgagataatagtaaattta	Protospacer
*.* * . .********* *****.********

14. spacer 3.27|698915|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to MN693202 (Marine virus AFVG_25M396, complete genome) position: , mismatch: 8, identity: 0.758

tgtcaagtgtaccatcttttaattcttgtgcta	CRISPR spacer
gacgaaatgtaccatcttttaattcttgtcttg	Protospacer
 .. **.********************** .*.

15. spacer 3.27|698915|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to MN693175 (Marine virus AFVG_25M140, complete genome) position: , mismatch: 8, identity: 0.758

tgtcaagtgtaccatcttttaattcttgtgcta	CRISPR spacer
gacgaaatgtaccatcttttaattcttgtcttg	Protospacer
 .. **.********************** .*.

16. spacer 3.27|698915|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to MN693603 (Marine virus AFVG_25M138, complete genome) position: , mismatch: 8, identity: 0.758

tgtcaagtgtaccatcttttaattcttgtgcta	CRISPR spacer
gacgaaatgtaccatcttttaattcttgtcttg	Protospacer
 .. **.********************** .*.

17. spacer 2.1|279112|36|NZ_AP012332|PILER-CR matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.75

aacggcggtggtcgcggtcgcggtggtcgcggaggc	CRISPR spacer
cccggcgggggtcgccgtcgcggtggtcgggcgtgt	Protospacer
  ****** ****** ************* * . *.

18. spacer 3.9|697817|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007625 (Bacillus pseudomycoides strain 219298 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.727

tatcaatttaagagcgaaaagaaaagtttttat	CRISPR spacer
catcaacttaagagcgaaaataaaataaacttt	Protospacer
.*****.************* ****    .* *

19. spacer 3.9|697817|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009650 (Bacillus pseudomycoides strain BTZ plasmid pBTZ_1, complete sequence) position: , mismatch: 9, identity: 0.727

tatcaatttaagagcgaaaagaaaagtttttat	CRISPR spacer
catcaacttaagagcgaaaataaaataaacttt	Protospacer
.*****.************* ****    .* *

20. spacer 3.15|698183|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 9, identity: 0.727

tatggcattaaacggcattgacatatcatggta	CRISPR spacer
tgcggcattaaaaggcattaacatatcaataag	Protospacer
*..********* ******.********  . .

21. spacer 3.19|698427|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to MN694387 (Marine virus AFVG_250M329, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

22. spacer 3.19|698427|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to MN693994 (Marine virus AFVG_250M330, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

23. spacer 3.19|698427|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to MN694465 (Marine virus AFVG_250M1200, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

24. spacer 3.19|698427|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to MN694767 (Marine virus AFVG_250M328, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

25. spacer 3.19|698427|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to MN694500 (Marine virus AFVG_250M1198, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

26. spacer 3.19|698427|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to MN694373 (Marine virus AFVG_250M164, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

27. spacer 3.19|698427|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to MN694400 (Marine virus AFVG_250M1011, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

28. spacer 3.19|698427|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to MN694490 (Marine virus AFVG_250M148, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

29. spacer 3.19|698427|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to MN693851 (Marine virus AFVG_250M123, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

30. spacer 3.19|698427|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to MN693612 (Marine virus AFVG_250M85, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

31. spacer 3.19|698427|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to MN694262 (Marine virus AFVG_250M733, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

32. spacer 3.19|698427|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to MT601271 (Bacillus phage vB_BsuM-Goe10, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
acaatttgtaaacgctcttgtacaagctggtgt	Protospacer
  *..***************** * ****   *

33. spacer 3.19|698427|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to KY368639 (Bacillus phage vB_BsuM-Goe2, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
acaatttgtaaacgctcttgtacaagctggtgt	Protospacer
  *..***************** * ****   *

34. spacer 3.19|698427|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to KF669649 (Bacillus phage CampHawk, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
acaatttgtaaacgctcttgtacaagctggtgt	Protospacer
  *..***************** * ****   *

35. spacer 3.19|698427|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to MN693857 (Marine virus AFVG_250M1199, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

36. spacer 3.19|698427|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to NC_011421 (Bacillus phage SPO1, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
acaatttgtaaacgctcttgtacaagctggtgt	Protospacer
  *..***************** * ****   *

37. spacer 3.19|698427|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to MN693690 (Marine virus AFVG_250M149, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

38. spacer 3.19|698427|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to MN694569 (Marine virus AFVG_250M103, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

39. spacer 3.19|698427|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to MN694581 (Marine virus AFVG_250M102, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

40. spacer 3.19|698427|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to MN694308 (Marine virus AFVG_250M150, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
actgtctgtaaatgcgcttgtagatgctgtcca	Protospacer
   *..******.** ************** *

41. spacer 3.19|698427|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to MH153807 (Rhodococcus phage Peregrin, complete genome) position: , mismatch: 9, identity: 0.727

tgagcttgtaaacgctcttgtagatgctgtgct	CRISPR spacer
agagcttgtaaacgcgcatgtagatatgttagt	Protospacer
 ************** * *******..  *. *

42. spacer 3.22|698610|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP004860 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence) position: , mismatch: 9, identity: 0.727

caaacgttcttcattgcttgcattgcaaaatta	CRISPR spacer
gcattcttcctcattgcatgcattgcaaaaaaa	Protospacer
  * . ***.******* ************  *

43. spacer 3.22|698610|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007616 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence) position: , mismatch: 9, identity: 0.727

caaacgttcttcattgcttgcattgcaaaatta	CRISPR spacer
gcattcttcctcattgcatgcattgcaaaaaaa	Protospacer
  * . ***.******* ************  *

44. spacer 3.27|698915|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to MN693463 (Marine virus AFVG_25M283, complete genome) position: , mismatch: 9, identity: 0.727

tgtcaagtgtaccatcttttaattcttgtgcta	CRISPR spacer
gacgaaatgaaccatcttttaattcttgtcttg	Protospacer
 .. **.** ******************* .*.

45. spacer 3.27|698915|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to MN693331 (Marine virus AFVG_25M281, complete genome) position: , mismatch: 9, identity: 0.727

tgtcaagtgtaccatcttttaattcttgtgcta	CRISPR spacer
gacgaaatgaaccatcttttaattcttgtcttg	Protospacer
 .. **.** ******************* .*.

46. spacer 3.27|698915|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to MN693334 (Marine virus AFVG_25M282, complete genome) position: , mismatch: 9, identity: 0.727

tgtcaagtgtaccatcttttaattcttgtgcta	CRISPR spacer
gacgaaatgaaccatcttttaattcttgtcttg	Protospacer
 .. **.** ******************* .*.

47. spacer 3.27|698915|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to MN693110 (Marine virus AFVG_25M284, complete genome) position: , mismatch: 9, identity: 0.727

tgtcaagtgtaccatcttttaattcttgtgcta	CRISPR spacer
gacgaaatgaaccatcttttaattcttgtcttg	Protospacer
 .. **.** ******************* .*.

48. spacer 3.27|698915|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to MH319721 (Marine virus AG-345-D19 Ga0172267_102 genomic sequence) position: , mismatch: 9, identity: 0.727

tgtcaagtgtaccatcttttaattcttgtgcta	CRISPR spacer
atttctttgttccttcttttaattcttgtgcca	Protospacer
  *.   *** ** *****************.*

49. spacer 3.27|698915|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to KX229736 (Campylobacter phage PC5, complete genome) position: , mismatch: 9, identity: 0.727

tgtcaagtgtaccatcttttaattcttgtgcta	CRISPR spacer
atgcaactgcaccatcttttaattctttaatta	Protospacer
   *** **.*****************  ..**

50. spacer 3.27|698915|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to NC_015386 (Treponema succinifaciens DSM 2489 plasmid pTRESU01, complete sequence) position: , mismatch: 9, identity: 0.727

tgtcaagtgtaccatcttttaattc-ttgtgcta	CRISPR spacer
ctgcaagtttaccagcttttaattctttatatt-	Protospacer
.  ***** ***** ********** **.*..*

51. spacer 4.1|985103|30|NZ_AP012332|CRISPRCasFinder matches to NZ_CP041349 (Komagataeibacter xylinus strain CGMCC 17276 plasmid pA, complete sequence) position: , mismatch: 9, identity: 0.7

tttccgctttttgttgctctacacaccatt	CRISPR spacer
gcggggttttttgttgctccacacaccaca	Protospacer
 .   *.************.********.

52. spacer 2.1|279112|36|NZ_AP012332|PILER-CR matches to EU826470 (Mycobacterium phage Solon, complete genome) position: , mismatch: 10, identity: 0.722

aacggcggtggtcgcggtcgcggtggtcgcggaggc	CRISPR spacer
ggcggcggtggtggcggtggcggtggtcagaccagc	Protospacer
..********** ***** *********. .  .**

53. spacer 3.25|698793|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 10, identity: 0.697

cgaagcctgcgaagtgttcctgctggaatgttt	CRISPR spacer
gtacagctgcgcagtgttcctgctgggatggac	Protospacer
  * . ***** **************.***  .

54. spacer 2.1|279112|36|NZ_AP012332|PILER-CR matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.694

aacggcggtggtcgcggtcgcggtggtcgcggaggc	CRISPR spacer
tcaggcggcggtcgcggtcgcggtgctcggcttcgt	Protospacer
   *****.**************** ***     *.

55. spacer 3.12|698000|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to NC_048652 (Bacillus phage vB_BsuM-Goe3, complete genome) position: , mismatch: 11, identity: 0.667

cactcttgtagatgctgtgcttgagcggcttat	CRISPR spacer
ttttcttgtagaagctgagcttgagcgatagcc	Protospacer
. .********* **** *********..   .

56. spacer 3.12|698000|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to MN043730 (Bacillus phage vB_BveM-Goe7, complete genome) position: , mismatch: 11, identity: 0.667

cactcttgtagatgctgtgcttgagcggcttat	CRISPR spacer
ttttcttgtagaagctgagcttgagcgatagcc	Protospacer
. .********* **** *********..   .

57. spacer 3.13|698061|33|NZ_AP012332|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.667

gcgtcgtgccgcggcgtgcgatagtgtcatcga	CRISPR spacer
acgtactgccgcggcgtgcgatagtactcctcg	Protospacer
.***  *******************... .. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1490816 : 1497463

Mycobacterium_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013399773.1\|1490816_1492277_-	NADP-dependent phosphogluconate dehydrogenase	M1T2E7	Synechococcus_phage	3.4e-31	30.1
WP_004114274.1\|1492707_1492959_+	glutaredoxin family protein	G8I4I4	Mycobacterium_phage	2.1e-10	49.4
WP_013399774.1\|1493025_1493526_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	R4JF54	Bacillus_phage	6.6e-11	30.8
WP_029600567.1\|1493616_1495821_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	2.8e-186	47.3
WP_004114270.1\|1495903_1496998_+	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	6.5e-112	61.0
WP_009994045.1\|1497175_1497463_-	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	1.4e-13	44.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP012332

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection