CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011348	Mycoplasma bovis strain NM2012, complete genome	1 crisprs	NA	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011348_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011348_1

244678-244760

Orphan

Consensus_repeat	Method
TCTGTACGAGATGTGCTTGAAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011348_1

>merge|NZ_CP011348|1|244678-244760|CRISPRCasFinder
TCTGTACGAGATGTGCTTGAAGAGCTTGATGAATCAGGCGAATCGCTTTGAGTTCCAGATTCTGTACGAGATGTGTTTGAAGA

>NZ_CP011348|1|1|244678-244760|CRISPRCasFinder
TCTGTACGAGATGTGCTTGAAGA	GCTTGATGAATCAGGCGAATCGCTTTGAGTTCCAGAT
TCTGTACGAGATGTGTTTGAAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011348.1\|WP_013954647.1\|248012_249959_+\|transketolase	unknown	unknown	gnl\|CDD\|223100
NZ_CP011348.1\|WP_013954652.1\|255280_255616_+\|HIT-family-protein	unknown	unknown	gnl\|CDD\|223611
NZ_CP011348.1\|WP_013456603.1\|250654_250924_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NZ_CP011348.1\|WP_013954691.1\|241071_242316_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP011348.1\|WP_013456076.1\|240391_240721_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011348.1\|WP_013954631.1\|231755_233672_+\|DNA-topoisomerase-IV-subunit-B	unknown	unknown	gnl\|CDD\|223265
NZ_CP011348.1\|WP_013954635.1\|238247_239222_+\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|223348
NZ_CP011348.1\|WP_013954633.1\|236412_237342_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319818
NZ_CP011348.1\|WP_013954653.1\|255734_256433_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011348.1\|WP_013954649.1\|251037_251625_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011348.1\|WP_038582854.1\|245516_246284_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223039
NZ_CP011348.1\|WP_048349607.1\|242346_243003_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|223434
NZ_CP011348.1\|WP_013954651.1\|253898_255281_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011348.1\|WP_013954650.1\|251718_253887_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011348.1\|WP_013954646.1\|246969_247914_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367881
NZ_CP011348.1\|WP_013954648.1\|250021_250576_-\|inorganic-diphosphatase	unknown	unknown	gnl\|CDD\|179388
NZ_CP011348.1\|WP_013954636.1\|239214_239922_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011348.1\|WP_014829885.1\|242986_243973_-\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_CP011348.1\|WP_013954634.1\|237343_238060_+\|ribonuclease-HIII	unknown	unknown	gnl\|CDD\|260000
NZ_CP011348.1\|WP_013954632.1\|233685_236271_+\|DNA-topoisomerase-IV-subunit-A	unknown	unknown	gnl\|CDD\|235503

Protein	Function_ID	Function_description	E-value
NZ_CP011348.1\|WP_013954647.1\|248012_249959_+\|transketolase	gnl\|CDD\|223100	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism].	0
NZ_CP011348.1\|WP_013954652.1\|255280_255616_+\|HIT-family-protein	gnl\|CDD\|223611	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only].	5.20672e-31
NZ_CP011348.1\|WP_013456603.1\|250654_250924_+\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	3.77072e-16
NZ_CP011348.1\|WP_013954691.1\|241071_242316_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.35927e-29
NZ_CP011348.1\|WP_013954634.1\|237343_238060_+\|ribonuclease-HIII	gnl\|CDD\|260000	cd06590, RNase_HII_bacteria_HIII_like, Bacterial type 2 ribonuclease, HII and HIII-like. This family includes type 2 RNases H from several bacteria, such as Bacillus subtilis, which have two different RNases, HII and HIII. RNases HIII are distinguished by having a large (70-90 residues) N-terminal extension of unknown function. In addition, the active site of RNase HIII differs from that of other RNases H; replacing the fourth residue (aspartate) of the acidic "DEDD" motif with a glutamate. Most prokaryotic and eukaryotic genomes contain multiple RNase H genes; however, no prokaryotic genomes contain the combination of both RNase HI and HIII. This mutual exclusive gene inheritance might be the result of functional redundancy of RNase HI and HIII in prokaryotes. Ribonuclease (RNase) H is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, archaeal RNase HII and eukaryotic RNase H2/HII). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication or repair.	1.55849e-72
NZ_CP011348.1\|WP_013954631.1\|231755_233672_+\|DNA-topoisomerase-IV-subunit-B	gnl\|CDD\|223265	COG0187, GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair].	0
NZ_CP011348.1\|WP_013954635.1\|238247_239222_+\|DNA-cytosine-methyltransferase	gnl\|CDD\|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	2.47396e-81
NZ_CP011348.1\|WP_013954633.1\|236412_237342_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.19348e-56
NZ_CP011348.1\|WP_038582854.1\|245516_246284_-\|hypothetical-protein	gnl\|CDD\|223039	PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.	5.22796e-06
NZ_CP011348.1\|WP_048349607.1\|242346_243003_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|223434	COG0357, GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane].	1.9478e-40
NZ_CP011348.1\|WP_013954646.1\|246969_247914_-\|hypothetical-protein	gnl\|CDD\|367881	pfam04231, Endonuclease_1, Endonuclease I. Bacterial periplasmic or secreted endonuclease I (EC:3.1.21.1) E. coli endonuclease I (EndoI) is a sequence independent endonuclease located in the periplasm. It is inhibited by different RNA species. It is thought to normally generate double strand breaks in DNA, except in the presence of high salt concentrations and RNA, when it generates single strand breaks in DNA. Its biological role is unknown. Other family members are known to be extracellular. This family also includes a non-specific, Mg2+ activated ribonuclease precursor.	5.57394e-50
NZ_CP011348.1\|WP_013954648.1\|250021_250576_-\|inorganic-diphosphatase	gnl\|CDD\|179388	PRK02230, PRK02230, inorganic pyrophosphatase; Provisional.	6.84527e-119
NZ_CP011348.1\|WP_014829885.1\|242986_243973_-\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	2.84424e-164
NZ_CP011348.1\|WP_013954632.1\|233685_236271_+\|DNA-topoisomerase-IV-subunit-A	gnl\|CDD\|235503	PRK05561, PRK05561, DNA topoisomerase 4 subunit A.	0

>NZ_CP011348.1|WP_014829885.1|242986_243973_-|ribose-phosphate-pyrophosphokinase
MNNNNALLFGMPNCIKLAERISKMINIPLSTLTLTKFADGETMPVSDEAVRGKDVYIIASTSRPVNDNLMILYLFIDSLKRASAKSINIALAYYGYARQDRKASGRQPIGAKLVADFLETAGASKIITVDLHNSAIQGFFNIPIDDLKASFTLAKAIKRSHEKFTVVSPDHGGTVRARSLAELISNDIKISIIDKRRTGINQTEVMGLIGDVKDQNAVIIDDIIDTGGTIIKAAETLKQYGAKKIVIAATHGIFSKGFDIFENNPAVEKVIITDSIDNDELLDKYKKLEIVSLDRFLGSVIDCSINGKSISMLYDKFAKEIKENESHK
>NZ_CP011348.1|WP_048349607.1|242346_243003_-|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MNHINKEYLLNKYSKQIPLLYRYAQMIYEKNKVMNICGFDSVDEIFNQGILGSILVFENAMNEYNHDFVNKKILDIGAGAGFPSVPLLIALDNKFELVIMESITKRCTFLESVKNEFNLNLTIINARAEEINDYNSYFDYICARAVGSVIKIYLMTNHHLAQNGYFILPKGKNYHAEIDEFKNKFTLEKDNISSFEYEDSINNENSSLVLIKKTKPTP
>NZ_CP011348.1|WP_013954691.1|241071_242316_+|IS3-family-transposase
MAKQLSVNEWKYLFEKYEKYRSGELTKKCFLNEMMKIKNVEHISDDQWKRLVNKYKRYNLGMNIESMSGRSPKKGKGSGRPKKTKSNDEILDEFLNDLNKEDLIKIIKIISTDDEIKKIKKDKFKETVTKIKNSFPFKVSNKVIMSLLKIKKSTYYKKLKKLKMIKEKNLELENTVVQAFKETGGIFGRERLAAYISKNKQIKLNYRTLGRIMKKLGLVCRIRKAKRTKESKNVAVTFQNIASRDYDGIYNDIYATDVTYIPSPIDVDQNFVYMSAVIHHKTKKILGFNLSLYNDNSLVIDNIKKVNFPKNFVIHSDHGSQYSSKEYLQLIERLNGKVSMSRIGNSLDNREIEYFFSVLKTEMFENFEKSVKKMTLKEFERHLNRFIDWYNNERMLKKFNYKTPHELWVEFCKK
>NZ_CP011348.1|WP_013456076.1|240391_240721_+|hypothetical-protein
MSRTKKLSISYLITYPIAFIVTVVLLVLYGRQLLDFAQQKEGFTGNLALWTVYLLYAVVIVVPFIMLIINILLIFFNVGTIARILLIVGLFVPWCSFVGALIALIRPGK
>NZ_CP011348.1|WP_013954636.1|239214_239922_+|hypothetical-protein
MNNYSEVAIELQSKLEEAINNIFEITNNEISINVEDVNILQRDNNSINSSTAIGYILEEYLIRKIEQYLSSPDCHFEFSMKPNNKANTSSYDFSLVYKDHLFYINLKANRNVNDAIAAINRLYSDYVEYEGKNPLHYLVFKTNYDIDKSKISNQNKIIIKGTYSFFLEQIDFSKGWKQDHRSWSPGGKLNSGRLIVSKNFFNENQIEISKISYEQTRAYLEEMFNKNFSVAEYEE
>NZ_CP011348.1|WP_013954635.1|238247_239222_+|DNA-cytosine-methyltransferase
MGKRGIIDLFAGAGGLTLGFTQNNFDILDTIEFWQPAVDTYNFNFKKNVVAKDITDSEVRNELESNWKNKTDLVIGGFPCQGFSLAGRRSKDDERNQLYKYTIDVISRLQPYGFVLENVKGILSFRESDNELVVDKIQKMLAKENYYTKFILLDSSNFGVPQKRERVIFIGCKDKEKVDKVISLLSKHKEKIVTVFDAIGHLEKVTDDKEIPNHIFSKHSEEIKERFMKLKEGESLSKSFSDAFRKLSYDKPSPTVKENHGGVHVHPVLPRVLTPRELANLQSFPEDFIFLGTKSNVLKQIGNAVPVKLSYEIAKIVNKVFFNE
>NZ_CP011348.1|WP_013954634.1|237343_238060_+|ribonuclease-HIII
MQFLDLDVESSLLENKSIIGVDEVGVGDYFGPLCASAVFIDAQNVNKVAELGIKDSKKLSDKRIKELALKLKNSGLIHYSLAHLNPSGYNKLNKSYNANILKMFVHLKAINSVVFKLKNIKYDYIFIDKYASVDNMLKYYNELVINNNWANFQEINEDILIANKAESYSISVAAASILARDQFLTLVSKMNDEYNTVFPLGAGPKVNAFAKDFFAKHSYDEEVIKKTCKKSFKMNILN
>NZ_CP011348.1|WP_013954633.1|236412_237342_+|Cof-type-HAD-IIB-family-hydrolase
MSTLTNNKKEKFLFAIDLDGTLLSSSRENIVPENCIKAIQRAKDEGHVVCIFTGRPWRSTKPIYDMLGLNTVVSNYNGAQIHNPKDDNFIPHIKYLNLNEMLYILGDQKVKKEISNLAIEGPGWVQLEHRDDDIEAVFGFSSAEKFTVGINLNKVPLSPTGIVFDVKETTDAEELRRYLRARYGDLGEFSYWSKGEGLTPVFDITNVTVNKGRALSLLSRYYGVDLDHTIAFGDGFNDVPMFKVATVSVVLGNAADLVKRHATVRLKKTNKEGGVGDYINKFLDNPEKEIAKSKAMALKMRKVSIQEEE
>NZ_CP011348.1|WP_013954632.1|233685_236271_+|DNA-topoisomerase-IV-subunit-A
MNKKKEQQLNDLLSKIVRENLDTVVADRFSRYSKYVIQQRALPDVRDGLKPVQRRILYSMYDLGLQHNKPFKKSARVVGDVIGKYHPHGDSSIYDAMVRMGQEWKMGHTLVEMHGNVGSIDDDPAAAMRYTEARLSEIADYVIGDIKKNTVKFAPNFDDSEKEPVVMPVLIPNLLINGSTGIASGFATEMPPHNLNEILDAAIAKIKNPAIELSKLAKIIQGPDFPTGGVIYGTDGIYEAFERGKGRITLASRYNVYSDNKYKYIEITEIPYGVIKSKLVHEIDLIVDSEEVAGLIEVKDQTDRNGINILITLDKNVNENVIVNYLFLKTQMRIYYNYNNVVIDNHTPKTMGISALLDAYLKHVKDVKVKTIEFDLIKHKARLEIVIGFLKVAKITDKVIEVIRKSEDSKQGVIDNLMSAFDFTLNQATAIAELRLYKLSKTDEHTFMFEKQELEEKIKQCELLLTNPDEFNNYLVSLFRDLKHKFGRIRRTSIEIEQINSSVNQEDLVKEEEVFLGISKFGYIKKVSKKTYESNLITTYGIKEDDNILFYDIASSLDKLLLFTNLGNYAYLPVFKVNESKWKEFGIHLSDFVDLSSGEEIVSVIKVSDFDVTNYVCMFTKKGQGKKVLLKDFDVSRFSKTFVAMKLKNDDELISAKLSNGLKDVLLITKNNFASLYSENDVPIYGLKSNGNKACYLANGDELVSFTVVKPNDSVALVSQSNKVRLINVSEISRVSKQNKGVSIFSKGRLNNAIVQCDPLLDETKLLLVNNQGQAHFEKIQNYVKQASTKFINFDADDIRTISLISNYSSTTNDNEFHSYEKESSDENQLMNKAIETKNSIDLSIDEILSKVDELLKKDKK
>NZ_CP011348.1|WP_013954631.1|231755_233672_+|DNA-topoisomerase-IV-subunit-B
MSNSNYDASSIQQLKGLEAVRKRPGMYIGSTDVNGLHHLIWEIVDNSIDEALAGEANEIAVILKNDGSVVVSDNGRGIPVGKTPSGKSAVELVFTELHAGGKFNEGAYKTSGGLHGVGSSVVNALSNKLKCLVYRDKHVYETIFENGDNIVQKTHIIGSTNKRGTLIQFWPNYEIFKKAKFNFETIAERLRESSFLISNLSIKLLDEQSGKSEEFKYSNGIKAFVEFINDSKTALFNVYSFKTVVNEIEIECGFQYTDGFNETILSFVNNVKTRDGGTHEIGLKSAITKTFNDFALDEKVLKGKNTFDGEDVREGLTVVLSVKIPEKFLEFVSQTKDKLGTPEAKSAVEEAVSKNLKTWITENKQIAKKILDKIKRASDSRESARKARLEARKTKSALKERQILSGKLTPAQTKNVKEKELFLVEGDSAGGSAKSGRDRKFQAILPLRGKVINTEKARLIDILKNEEINTIINAIGAGIGVDFDINKIQYDKVIIMTDADTDGAHIQILLLTFFFRHMRKLIEEGKVYIALPPLFKLSINKGQKKILYAWDEDELKELLQSKMKGAEVQRYKGLGEMNADQLWETTMNPETRTLIQVRIQDAALAERRVSTLMGDNVDSRKEWINKNVNFTMEDDFEI
>NZ_CP011348.1|WP_038582854.1|245516_246284_-|hypothetical-protein
MPNKVVITGFKDSLINENIIIKPEPIPPINRENPIMKDAETSTNDESSSSSTSRTDSGTQSDSPASSSSSSTSRTDSGTQSDSPASSSSSSTSRTDSGTQSDSPASSEPEKANSELSNERKIKEKGYRLNELTAYPYDLIDVDDDANKDELAKKLNDVITHKNGAIAIVGGSFFSKCNNLQLTGLSINKSIKSETKSQISTHNKLIGFFEGSDGYGIKVGHHGEANSKKYLFKWRLVKEDGNFGPKVYEQIIDLS
>NZ_CP011348.1|WP_013954646.1|246969_247914_-|hypothetical-protein
MMNSKMIKHKFLVSLGLISAPVLSLTVLSSTGCNNKNSTTDDNYLIPEKSFYEKSNYYDSLEGLNGNKLYSELIKIQHNHLSGIKSYRYLKTIYKDAFKDLYYEKDGSLLDIYSENPIGKDPYNYSFNDSGSSAKSEGLGFNREHLVPQSWFKREKLARQDAHHVWPADILVNNKRDNYPFGKVTNAIFTSKNGTKIDSYLAEPIDEFKGDIARAHLYFAITHASRYKMHNKGNEVFKFFDNKPLVNKYFDTYTKWAKKDQINLFDIVRNNEIAKHQNGLRNPFSDYPELIDLIINPGNKVFVNKGILKSNIAV
>NZ_CP011348.1|WP_013954647.1|248012_249959_+|transketolase
MNINQKVVASMQAIALDSINNAGGGHIGSAIDISPIMYAVVAKHMKISADHPKWISRDRLILSAGHASMSFYSMMHFLGLLSLDEMKNHKRKHSKTPSHPETDAFDFVDASTGPLGQGIAMGVGMAIAEKKMSLKINKGNTKVIDNYTYVIAGDGCLQEGITHEALQIASVMKLNKFILIHDYNKIQLDTKVSDVSNVDLLAYFKALNFNVIEINEASYDNIDKAITEAKKSDRPTYIMVHNIIAPFTPFENTTKGHHGILNSEQTIEFKKAIGLENKAPFEYDSDVYEYGRTIMANKAKSYEEWLVELDNHKKQFPWIHSLLLETINNETNYDFSNILVKQDDLAIRDYFKAFSEIVDFSYPFLIGGGADVGSSTKVRFADSILDYGQRIDYGVREFAMTAINNGINLYGGLKTADSTFLAFSDYAKGALRLGGIMKLPAVHLYSHDSYLVGDDGPTHQPIEQVTVLRSIPNLLVIRPCDKYELVMGLNYAYNNTSTQVAIIGTRQPIKTMHSSKFSEFMAASLVYENKEFDISILSSGSEVELAYKTAVELKNHGIIANVISVPVLQKLVDNDELAIKLKLDKKPMFAIEASNDPLWYKLSKYNKIDGHFASEYGFSDKGNVVYDSMGFNVNSIVDKVKQFLSKNA
>NZ_CP011348.1|WP_013954648.1|250021_250576_-|inorganic-diphosphatase
MSNVIEIRIEIPKNSNIKYEYNREDGQIHVDRILRGDFKYPCNYGFIPNALDWDGDELDVLLYSPETFIPGVVVNARIIGAMKMNDSGETDTKLIAVHDDDYRLANINSLKELPEPFLLDIETFFNNYKNWKKPNLTKVLGFEDEKWAFAELEECKELMDKYGKMPKKEFVAKMMKEHPEKYTF
>NZ_CP011348.1|WP_013456603.1|250654_250924_+|30S-ribosomal-protein-S20
MANIKSKVKSIAKQEEFRQRNNAMKTRVRKAIRAAREAVLAKEEGFEKKVFEAHSIIATAVQKGIYHPNKGARKSSRLDHFVNEQKSKQ
>NZ_CP011348.1|WP_013954649.1|251037_251625_-|hypothetical-protein
MQMIIKTTAIEVLRELQKLLESENINYSLGLSNYYEYKNKPELFLINDIEVCLWHKDFYFLLKKYPNHFILPENLPFKSLAPYYKFQGSSIKINIIVGTSDEKINYWYKFRNYKRLIYWGNSKKHWFYYFLGHRTQRVYLHDLVNDLVVERYTKFIILNSEIDKFKAFDNLNFNKRFFVTEKGITIPFFEPFRSL
>NZ_CP011348.1|WP_013954650.1|251718_253887_+|hypothetical-protein
MGKKKTPFFERLLQKNAEQENKNKTTGKSKKSRSWKIATTSTVLVLAVATGITVPLVINSTKKNFIDGYASNTNVASAKIGDHNLDLNFGDFKDIYQNHNTSTSEERLKEIDKIILYYLYDQEQKASAEYQKLWNDSKRSDEKDNNSFRLPTLDELKTKFKNELVDIENNMKLQFGTANWQTEFNKHLVQKYNGAKNIDEAVKNKTFEHIKSDALRRFRLINGDSKKDEIERKGKDGKHVFGWWHKDNNENKFIELEDKSKLALATDSFVFKDSYKSIDPFIDSYIANEKPRIISEFTIPGIAPAKKNEKWKIDKNIFLRYLFYAKEGTFGLSKVTEGYNVVKEKFNSFDHYIKSVVDKANGKNILPDEAIQYSSILNMFSTSKEDIKKNWGTSGLTSISELVTGDNFQKFLANNPKLLFGENYSSGSTNGNKPKEIELFEKIKEISEKIAEVAKSSNGMSGSSSTGSSSNNNGALISNNTQATEYNTMLEKFFTEVNESQNKGLTEKVFEENILKKFVAIFEDKEKIQTVYKVKFNGNNIGAKNVTGILSPEGFKLLIFGDEIKKDELVKMIKNDFILNNKYKKQLGVRYNALQKLNKQLSRNEYILKMLQDNEFKEYLKTQNNNFATDQNGKKLENVKYNEQSIKDLITSSTAAIQFDKISNFIKLSKAAATWIETRAKNNYDELFELKDGKAYFKHNKDKTAASLVLEYLKKQFNLEAK
>NZ_CP011348.1|WP_013954651.1|253898_255281_+|hypothetical-protein
MKKISKKLLASLSLFTIPSVAIISAKCGNDVETTERLNQQKDLKDAKRVTELEEIWKNFALSYIYKIKPSNKHDAKSWKQNFEKEFQNQQSQLFKDSYDAYKIFALDQLSKNEYYFVEKSLEWKKNDVFKSNPFNWISTKNFPGETDQKDFIRIWMEDKTGIRKEINNMLLVKAYFDISELKKLQTIANNIANAGKADKDKSKDQKFEYFVGGKDAKFDLDHYNLVKYAFENKYIQLWKRTFDDKTTSNDVFTRKEIKNTISSKDDFNAFFKDTAEAEKKAKEWEIITKNNEDKELQGYAGIQKDPGTYGLNWNETDNKRRVTGSGTYGVYDALNSILISFNDLASKSSVGVKDKDGKSIVSYINQIVPVGKKIKLKTKEDYTKDKVEDSKLKETEVLSFEGTIYKEYLNKLAYLFYGKDSKNLLEKAIEAFAHLGVKIKVNKEIAPLYEQLKNKVWVEK
>NZ_CP011348.1|WP_013954652.1|255280_255616_+|HIT-family-protein
MDDLFLKIISGEEEGKIFYEDEYCVAFYDKFPIQPGHFLVVPRIKSKNIAEADDFTAGHLINTARKLGKQEVLDKGIAGFKILINTGRSADQSIFHTHVHVIPYKEKSKDN
>NZ_CP011348.1|WP_013954653.1|255734_256433_+|hypothetical-protein
MNKRKLLLMSSLMSVAPIMVAAKCNPDSDNIVEFRLGIKDLNLRFANYGAFSSKELDKMLKQKPLKDGEFTVVYPSQEELEKEAKIIRDFFEKEETKKIPSYQTIYKETYETIVLGKRPVMLSDFTNEYLWSRDLVKIIDNGSIKNKNKLKLIINQFIDNANGSTTAHFRIEHSDDQRIYEVVGDSNGYIIQFNGKLKTISPNHYHLTKEIIENNKGNLAVLLKANETTQRK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

77393 : 88754

Bodo_saltans_virus(28.57%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013954527.1\|77393_78374_+	lipoate--protein ligase	A0A2H4UVX5	Bodo_saltans_virus	3.9e-15	27.1
WP_013954528.1\|78377_79199_+	alpha/beta hydrolase	G9E3U1	Emiliania_huxleyi_virus	2.3e-08	32.5
WP_013954529.1\|79282_80047_+	hypothetical protein	NA	NA	NA	NA
WP_013954530.1\|80039_81020_+	aspartate--ammonia ligase	A0A1C9C5F0	Heterosigma_akashiwo_virus	8.1e-53	40.6
WP_013954531.1\|81144_85521_+	PolC-type DNA polymerase III	A0A0K2SUJ2	Clostridium_phage	6.2e-12	31.8
WP_013954532.1\|85926_87150_+	replication-associated recombination protein A	A0A127AWE7	Bacillus_phage	1.5e-61	35.1
WP_013456569.1\|87139_88105_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	3.6e-29	40.9
WP_013954533.1\|88094_88754_+	uracil-DNA glycosylase	A0A068EP41	Falconid_herpesvirus	1.6e-28	36.4

DBSCAN-SWA_2

148694 : 158301

Mycoplasma_phage(57.14%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013455927.1\|148694_149711_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	8.4e-37	33.6
WP_048349600.1\|150038_151880_-	oligoendopeptidase F	A0A1X9I5X5	Streptococcus_phage	3.5e-17	19.1
WP_013954581.1\|152141_153554_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.6e-81	68.7
WP_013954582.1\|153537_154374_+	ABC transporter permease	Q6GZ02	Mycoplasma_phage	1.5e-87	62.0
WP_013954583.1\|154366_155260_+	spermidine/putrescine ABC transporter permease	Q6GZ01	Mycoplasma_phage	2.1e-92	62.1
WP_013954584.1\|155246_157148_+	membrane protein	Q6GZ00	Mycoplasma_phage	1.8e-80	34.7
WP_013455927.1\|157284_158301_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	8.4e-37	33.6

DBSCAN-SWA_3

214434 : 289052

Bacillus_virus(12.5%)

tRNA,transposase,integrase

attL 278455:278503|attR 287285:287333

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_078086163.1\|214434_215463_-\|transposase	IS30-like element ISMbov1 family transposase	A0A2K9V2S9	Faecalibacterium_phage	6.5e-21	33.3
WP_014829881.1\|217128_218562_-	hypothetical protein	NA	NA	NA	NA
WP_048349644.1\|219199_220531_-	hypothetical protein	NA	NA	NA	NA
WP_041323925.1\|220524_222840_-	S8 family serine peptidase	NA	NA	NA	NA
WP_013954624.1\|223014_223464_-	hypothetical protein	NA	NA	NA	NA
WP_013954625.1\|223785_225627_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
WP_013954626.1\|225613_226066_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
WP_049773792.1\|226176_227892_+	hypothetical protein	NA	NA	NA	NA
WP_013954628.1\|228035_229055_+	hypothetical protein	NA	NA	NA	NA
WP_013954629.1\|229055_229604_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_013455969.1\|229671_230232_+	peptide deformylase	NA	NA	NA	NA
WP_013954630.1\|230244_231642_+	CvpA family protein	NA	NA	NA	NA
WP_013954631.1\|231755_233672_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	5.7e-119	41.9
WP_013954632.1\|233685_236271_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	9.8e-90	29.6
WP_013954633.1\|236412_237342_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_013954634.1\|237343_238060_+	ribonuclease HIII	NA	NA	NA	NA
WP_013954635.1\|238247_239222_+	DNA cytosine methyltransferase	R4TMW4	Halovirus	1.6e-48	38.4
WP_013954636.1\|239214_239922_+	hypothetical protein	NA	NA	NA	NA
WP_013456076.1\|240391_240721_+	hypothetical protein	NA	NA	NA	NA
WP_013954691.1\|241071_242316_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	5.3e-09	27.0
WP_048349607.1\|242346_243003_-	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA
WP_014829885.1\|242986_243973_-	ribose-phosphate pyrophosphokinase	A0A2K9L2G2	Tupanvirus	2.2e-42	35.7
WP_013954642.1\|244190_244913_-	hypothetical protein	NA	NA	NA	NA
WP_038582854.1\|245516_246284_-	hypothetical protein	NA	NA	NA	NA
WP_013954646.1\|246969_247914_-	hypothetical protein	NA	NA	NA	NA
WP_013954647.1\|248012_249959_+	transketolase	NA	NA	NA	NA
WP_013954648.1\|250021_250576_-	inorganic diphosphatase	A0A1B1ISK6	uncultured_Mediterranean_phage	2.1e-21	39.1
WP_013456603.1\|250654_250924_+	30S ribosomal protein S20	NA	NA	NA	NA
WP_013954649.1\|251037_251625_-	hypothetical protein	NA	NA	NA	NA
WP_013954650.1\|251718_253887_+	hypothetical protein	NA	NA	NA	NA
WP_013954651.1\|253898_255281_+	hypothetical protein	NA	NA	NA	NA
WP_013954652.1\|255280_255616_+	HIT family protein	B5LJ12	Mycobacterium_phage	3.6e-05	33.8
WP_013954653.1\|255734_256433_+	hypothetical protein	NA	NA	NA	NA
WP_004024364.1\|256486_256639_-	50S ribosomal protein L33	NA	NA	NA	NA
WP_013456491.1\|257104_257590_+	thiol peroxidase	NA	NA	NA	NA
WP_013456378.1\|257627_257864_-	hypothetical protein	NA	NA	NA	NA
WP_013954655.1\|257853_258918_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA
WP_013954656.1\|258986_259271_-	hypothetical protein	NA	NA	NA	NA
WP_014829889.1\|259292_260843_-\|tRNA	methionine--tRNA ligase	A0A1V0SEZ7	Hokovirus	1.9e-80	35.7
WP_013954658.1\|260845_261652_-\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_013456627.1\|261651_263841_-	ribonuclease R	Q0GXV6	Lactococcus_phage	1.0e-71	33.5
WP_013456572.1\|263843_264086_-	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_013456283.1\|264428_265016_+	guanylate kinase	A0A0M5KCK5	Mollivirus	1.2e-08	38.6
WP_013456579.1\|265021_265774_+	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_013456514.1\|265791_266790_+	serine/threonine protein kinase	Q85453	Moloney_murine_sarcoma_virus	4.3e-17	32.2
WP_013456585.1\|266801_267647_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA
WP_013455939.1\|267633_268296_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_013954660.1\|269230_270619_+\|transposase	transposase	NA	NA	NA	NA
WP_013954661.1\|270787_273013_-	AAA family ATPase	A0A218KCE8	Bacillus_phage	3.4e-30	27.7
WP_048349608.1\|273158_274592_-\|transposase	transposase	NA	NA	NA	NA
WP_013954662.1\|275064_276108_+	AAA family ATPase	A0A2H4UTU5	Bodo_saltans_virus	9.9e-09	29.0
WP_013954663.1\|276109_278380_+	S8 family peptidase	NA	NA	NA	NA
278455:278503	attL	NA	NA	NA	NA
WP_013954664.1\|278609_281750_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	2.3e-24	24.8
WP_013954666.1\|283377_283929_+	C-terminal truncated type I restriction modification DNA specificity domain-containing protein	NA	NA	NA	NA
WP_013954667.1\|283925_284618_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_013954668.1\|284796_285972_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_013954669.1\|286045_287014_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	3.8e-31	29.2
WP_013456559.1\|287378_289052_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
287285:287333	attR	NA	NA	NA	NA

DBSCAN-SWA_4

294238 : 377522

Orpheovirus(13.33%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013954674.1\|294238_296905_+\|tRNA	isoleucine--tRNA ligase	A0A2I2L3Y0	Orpheovirus	4.2e-80	27.3
WP_013954675.1\|296917_297628_+	signal peptidase II	NA	NA	NA	NA
WP_048349609.1\|297888_299562_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_013954660.1\|300249_301638_+\|transposase	transposase	NA	NA	NA	NA
WP_013456429.1\|301678_303538_+	hypothetical protein	NA	NA	NA	NA
WP_013954676.1\|304487_305084_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_013456191.1\|305064_306027_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.5e-06	26.5
WP_048349610.1\|306063_308430_+	membrane protein	NA	NA	NA	NA
WP_013456468.1\|308500_309367_+\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_013456636.1\|309359_310202_+	HAD family phosphatase	NA	NA	NA	NA
WP_013456459.1\|310233_311121_+	hypothetical protein	NA	NA	NA	NA
WP_013456065.1\|311211_311478_+	30S ribosomal protein S15	NA	NA	NA	NA
WP_013455955.1\|311631_312423_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_013456385.1\|313799_314774_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_013456634.1\|314760_315585_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_048349611.1\|315733_317503_+	hypothetical protein	NA	NA	NA	NA
WP_013954682.1\|317542_318610_-	variable surface lipoprotein	NA	NA	NA	NA
WP_013954683.1\|318899_320900_+	DHH family phosphoesterase	NA	NA	NA	NA
WP_013954684.1\|320880_321336_+	50S ribosomal protein L9	NA	NA	NA	NA
WP_013954685.1\|321325_322801_+	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	6.0e-52	33.5
WP_013456244.1\|322800_324093_+	DUF21 domain-containing protein	NA	NA	NA	NA
WP_013954686.1\|324451_325471_+	variable surface lipoprotein	NA	NA	NA	NA
WP_014829901.1\|325880_326255_+	hypothetical protein	NA	NA	NA	NA
WP_048349612.1\|326905_327667_+	variable surface lipoprotein	NA	NA	NA	NA
WP_013954691.1\|329418_330663_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	5.3e-09	27.0
WP_013456216.1\|331104_332454_+	SidA/IucD/PvdA family monooxygenase	A0A2K5B2C5	Erysipelothrix_phage	1.0e-13	24.0
WP_013954692.1\|332446_334057_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_013954693.1\|334122_335562_-	DNA recombination protein RmuC	NA	NA	NA	NA
WP_013954694.1\|335673_337761_-	peptidase S41	NA	NA	NA	NA
WP_013954695.1\|337724_339116_-	leucine-rich repeat protein	NA	NA	NA	NA
WP_013954696.1\|339118_341428_-	leucine-rich repeat domain-containing protein	NA	NA	NA	NA
WP_013954697.1\|341746_343108_-	variable surface lipoprotein	NA	NA	NA	NA
WP_013954698.1\|343627_344461_+	DNA adenine methylase	A0A1S5PRR3	Streptococcus_phage	3.6e-54	45.7
WP_013954699.1\|344767_345721_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_013954700.1\|345770_346667_+	elongation factor Ts	NA	NA	NA	NA
WP_013954702.1\|348597_349101_-	hypothetical protein	S6AVW3	Thermus_phage	5.6e-10	32.8
WP_048349613.1\|349403_351077_-\|transposase	IS1634-like element ISMbov3 family transposase	NA	NA	NA	NA
WP_013954704.1\|351390_352755_-	NADH oxidase	NA	NA	NA	NA
WP_048349614.1\|353138_354812_+\|transposase	IS1634-like element ISMbov3 family transposase	NA	NA	NA	NA
WP_013954705.1\|354941_355727_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_013954706.1\|355731_357261_-	RNA polymerase sigma factor	G8CLC7	Synechococcus_phage	2.0e-29	33.7
WP_013954707.1\|357253_359194_-	DNA primase	A0A1S5RFD7	Helicobacter_phage	5.7e-42	35.3
WP_013954708.1\|359235_360612_-\|tRNA	glycine--tRNA ligase	A0A2I2L3K8	Orpheovirus	3.9e-53	32.0
WP_013954709.1\|360723_362511_-	membrane protein	NA	NA	NA	NA
WP_013954710.1\|362961_364317_+	alkylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013456298.1\|364319_365252_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.3e-07	30.0
WP_013456124.1\|365215_366967_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_013456114.1\|367073_367319_-	DUF2188 domain-containing protein	NA	NA	NA	NA
WP_013954711.1\|367399_369919_-	preprotein translocase subunit SecA	NA	NA	NA	NA
WP_038582866.1\|370155_371202_+	zinc-dependent alcohol dehydrogenase family protein	A0A0K0KVL7	Prochlorococcus_phage	1.0e-13	26.9
WP_013954712.1\|371350_373189_-	type I DNA topoisomerase	A0A2P1ELA0	Moumouvirus	4.8e-75	32.1
WP_013456432.1\|373568_374006_+	30S ribosomal protein S6	NA	NA	NA	NA
WP_013456362.1\|374047_374446_+	single-stranded DNA-binding protein	A0A0H3U4B5	Staphylococcus_phage	9.3e-08	30.3
WP_013456088.1\|374465_374792_+	30S ribosomal protein S18	NA	NA	NA	NA
WP_013954713.1\|374926_376255_-	hypothetical protein	NA	NA	NA	NA
WP_078086165.1\|376493_377522_-\|transposase	IS30-like element ISMbov1 family transposase	A0A2K9V2S9	Faecalibacterium_phage	6.5e-21	33.3

DBSCAN-SWA_5

927533 : 972024

Staphylococcus_phage(25.0%)