CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011494	Marinobacter psychrophilus strain 20041, complete genome	3 crisprs	WYL,DEDDh,cas3,csa3,DinG,RT,PD-DExK	0	1	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011494_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011494_1

316378-316449

Orphan

Consensus_repeat	Method
GGGACAGATTTCAAATCTGTCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011494_1

>merge|NZ_CP011494|1|316378-316449|CRISPRCasFinder
GGGACAGATTTCAAATCTGTCCCTGAATGCCACGCCTATATCTCCAAAGGGGACAGATTTCAAATCTGTCCC

>NZ_CP011494|1|1|316378-316449|CRISPRCasFinder
GGGACAGATTTCAAATCTGTCCC	TGAATGCCACGCCTATATCTCCAAAG
GGGACAGATTTCAAATCTGTCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011494.1\|WP_048383849.1\|311387_312413_-\|C4-dicarboxylate-ABC-transporter	unknown	unknown	gnl\|CDD\|270386
NZ_CP011494.1\|WP_048383841.1\|304570_305338_+\|spermidine/putrescine-ABC-transporter-permease-PotC	unknown	unknown	gnl\|CDD\|236542
NZ_CP011494.1\|WP_048383868.1\|323263_323752_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183009
NZ_CP011494.1\|WP_048383844.1\|309334_310621_-\|TRAP-transporter-large-permease	unknown	unknown	gnl\|CDD\|224509
NZ_CP011494.1\|WP_048383843.1\|308875_309319_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP011494.1\|WP_053076094.1\|319578_320406_-\|thiol:disulfide-interchange-protein-DsbG	unknown	unknown	gnl\|CDD\|183262
NZ_CP011494.1\|WP_157035511.1\|313810_313984_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223740
NZ_CP011494.1\|WP_048383852.1\|314175_316356_+\|5-histidylcysteine-sulfoxide-synthase	unknown	unknown	gnl\|CDD\|275140
NZ_CP011494.1\|WP_048383866.1\|321951_323076_-\|alanine-dehydrogenase	unknown	unknown	gnl\|CDD\|240630
NZ_CP011494.1\|WP_048383842.1\|305334_306375_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|181913
NZ_CP011494.1\|WP_048383864.1\|320446_321259_-\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NZ_CP011494.1\|WP_048383850.1\|312550_313090_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225496
NZ_CP011494.1\|WP_157035514.1\|321560_321698_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237276
NZ_CP011494.1\|WP_048383853.1\|316476_317250_-\|oxygen-insensitive-NADPH-nitroreductase	unknown	unknown	gnl\|CDD\|380322
NZ_CP011494.1\|WP_048383856.1\|318632_318818_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011494.1\|WP_048383855.1\|317361_318411_-\|cytochrome-c-peroxidase	unknown	unknown	gnl\|CDD\|224771
NZ_CP011494.1\|WP_048383851.1\|313208_313757_+\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|238207
NZ_CP011494.1\|WP_157035512.1\|318857_319142_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184954
NZ_CP011494.1\|WP_157035513.1\|319160_319307_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011494.1\|WP_048383846.1\|310671_311262_-\|TRAP-transporter-small-permease	unknown	unknown	gnl\|CDD\|225632

Protein	Function_ID	Function_description	E-value
NZ_CP011494.1\|WP_048383849.1\|311387_312413_-\|C4-dicarboxylate-ABC-transporter	gnl\|CDD\|270386	cd13668, PBP2_TRAP_UehA_TeaA, Periplasmic substrate-binding component of osmoregulatory TRAP transporters TeaA and UehA; the type 2 periplasmic-binding protein fold. This subfamily includes the periplasmic-binding component of the ectoine-specific TRAP transporters TeaA from Halomonas elongata and UehA from Ruegeria pomeroyi. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process and a smaller membrane of unknown function. The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.9697e-147
NZ_CP011494.1\|WP_048383841.1\|304570_305338_+\|spermidine/putrescine-ABC-transporter-permease-PotC	gnl\|CDD\|236542	PRK09500, potC, spermidine/putrescine ABC transporter membrane protein; Reviewed.	3.52349e-136
NZ_CP011494.1\|WP_048383844.1\|309334_310621_-\|TRAP-transporter-large-permease	gnl\|CDD\|224509	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism].	4.21076e-107
NZ_CP011494.1\|WP_048383843.1\|308875_309319_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	2.45748e-28
NZ_CP011494.1\|WP_048383866.1\|321951_323076_-\|alanine-dehydrogenase	gnl\|CDD\|240630	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyruvate to L-alanine via reductive amination. Like formate dehydrogenase and related enzymes, L-AlaDH is comprised of 2 domains connected by a long alpha helical stretch, each resembling a Rossmann fold NAD-binding domain. The NAD-binding domain is inserted within the linear sequence of the more divergent catalytic domain. Ligand binding and active site residues are found in the cleft between the subdomains. L-AlaDH is typically hexameric and is critical in carbon and nitrogen metabolism in micro-organisms.	0
NZ_CP011494.1\|WP_157035511.1\|313810_313984_+\|hypothetical-protein	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	0.000268307
NZ_CP011494.1\|WP_048383852.1\|314175_316356_+\|5-histidylcysteine-sulfoxide-synthase	gnl\|CDD\|275140	TIGR04344, generic_methyltransferase, 5-histidylcysteine sulfoxide synthase. Ovothiol A is N1-methyl-4-mercaptohistidine. In the absence of S-adenosylmethione, a methyl donor, the intermediate produced is 4-mercaptohistidine. In both Erwinia tasmaniensis and Trypanosoma cruzi, a protein occurs with 5-histidylcysteine sulfoxide synthase activity, but these two enzymes and most homologs share an additional C-terminal methyltransferase domain. Thus OvoA may be a bifunctional enzyme with 5-histidylcysteine sulfoxide synthase and 4-mercaptohistidine N1-methyltranferase activity. This model describes the 5-histidylcysteine sulfoxide synthase domain, a homolog of the ergothioneine biosynthesis protein EgtB. [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs].	0
NZ_CP011494.1\|WP_048383842.1\|305334_306375_+\|extracellular-solute-binding-protein	gnl\|CDD\|181913	PRK09501, potD, spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed.	1.25422e-138
NZ_CP011494.1\|WP_048383864.1\|320446_321259_-\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	1.00983e-35
NZ_CP011494.1\|WP_048383850.1\|312550_313090_-\|hypothetical-protein	gnl\|CDD\|225496	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	0.000331081
NZ_CP011494.1\|WP_157035514.1\|321560_321698_+\|hypothetical-protein	gnl\|CDD\|237276	PRK13024, PRK13024, bifunctional preprotein translocase subunit SecD/SecF; Reviewed.	3.14447e-14
NZ_CP011494.1\|WP_048383853.1\|316476_317250_-\|oxygen-insensitive-NADPH-nitroreductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	3.81304e-99
NZ_CP011494.1\|WP_053076094.1\|319578_320406_-\|thiol:disulfide-interchange-protein-DsbG	gnl\|CDD\|183262	PRK11657, dsbG, disulfide isomerase/thiol-disulfide oxidase; Provisional.	3.49046e-109
NZ_CP011494.1\|WP_048383855.1\|317361_318411_-\|cytochrome-c-peroxidase	gnl\|CDD\|224771	COG1858, MauG, Cytochrome c peroxidase [Inorganic ion transport and metabolism].	4.06764e-121
NZ_CP011494.1\|WP_048383851.1\|313208_313757_+\|glutathione-peroxidase	gnl\|CDD\|238207	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.	8.88448e-52
NZ_CP011494.1\|WP_157035512.1\|318857_319142_+\|hypothetical-protein	gnl\|CDD\|184954	PRK14992, PRK14992, tetrathionate reductase subunit TtrC.	0.00276035
NZ_CP011494.1\|WP_048383868.1\|323263_323752_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	2.68665e-70
NZ_CP011494.1\|WP_048383846.1\|310671_311262_-\|TRAP-transporter-small-permease	gnl\|CDD\|225632	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism].	1.31865e-24

>NZ_CP011494.1|WP_048383852.1|314175_316356_+|5-histidylcysteine-sulfoxide-synthase
MIEKTAELAAEPNLTTKSAKPFSRTVNLAEGDVQQKREEIERCFCDTFDTYESLFTTLAGDDAYFKKSIPLRHPLMFYLGHTATFFVNKLVLAKILPERIDPVMESTFAVGVDEMSWDDLNEGNYAWPKVSAVMAYRQIVRAMMVDLIRTLPLQFPVNWKSPFWPILMGIDHERIHLETSSVLIRQQKLEYVQPQPEWAPNTQSGQAPQNELLPVAAGDVSLGLPVGGEYYGWDNEYGSHEANVDMFDASKYLVSNQEFLEFVEDGGYSQDAYWSEEGLGWRAFVKASHPTFWVWHNQWFLRLMTEEVEMRWDWPAEVNYHEAKAFCEWKTVDSGRPVRLPTEDEWHRLAEVAQVAEVGVEPAAANLHLDHGASACSVTRFRHGQWFDVVGNVWQWTETPMYPFAGFEVHPLYDDFTTPTFDNRHNLIKGGSWISCGNEARLSARYAFRRHFFQHAGFRYVASEAELKHPSAYYENDVILAQYSEFNFGENWHGEANFPKELAMAGIAALDERSTADQSGVSYGRALDIGCACGRTSFELATRFEHVDGIDFSANFIQKGVEMAEQKVIRYALPEEGDLVSYHERTLEELGLTESAGRVAFHQGDACNLKTLFNNYDLIVAGNLIDRLYDPAQFLTHIHERLNDNGVLVIASPYTWLEEYTPREKWVGGYKKDGENYSTLDGLKDLLAPHFRLMSEPRSLPFVIRETRNKYQHSLSELTVWEKVTP
>NZ_CP011494.1|WP_157035511.1|313810_313984_+|hypothetical-protein
MVDSLSALSVNLKIQMWISPDSLDVPPCIIAELLERVKQALDDVGIEIPFPHLQLLI
>NZ_CP011494.1|WP_048383851.1|313208_313757_+|glutathione-peroxidase
MFRWPISVALVLLWGAGPVVADETARCPTFLDHDLPKLHSSETVNLCELAAGKPMLVVNTASFCGFTNQFKGLEQLHQRYGKEGLVVVGFASNDFRQEADTEEEAATICFKNFGVTFTMIAPGPVTGVGATPVFAHINQQSQAPRWNFTKYLLNDLGEVVESFPSSVRPGDKQVTQAVELVL
>NZ_CP011494.1|WP_048383850.1|312550_313090_-|hypothetical-protein
MTLPIIHVFLSHGLESGPDSTKIQAMKTISEKYPDVVAEAIDHRSSKDPTTRLKQMQAAMERAGADPQRTVLAGSSMGGWVCAQTSAMTPVLGCFLLAPALALIRYPQSRPQISATFSQIIHGWEDDVVPVMPVLELAQQQRISALILNDGHRLENSVARITQEFEHFLKACLENRNTP
>NZ_CP011494.1|WP_048383849.1|311387_312413_-|C4-dicarboxylate-ABC-transporter
MSSMSKFKKLAGLSALMFAALTAANSVNAANWRYAHEEYEGDVQDVFAYKFKEYIEDNSDNTVQVYRFGELGESDDIMEQTQAGILNFVNQSPGFTGALIPEAQIFFIPYLMPTDMESVVTFFRESKAINDDFPKLYAEKGLELLKMYPEGEMVITLDEAITTPEELKNKKIRVMTNPLLSETYSAFGATPTPLPWGEVYGALQTNMVQGQENPIFWIQSGGLYEVSPHLIFTGHGWFTTAMMANQNFYEGLSDADKELVRKASDFAFEEILDHIDGLADEALAKIQESSDEVTVTRLNEEQIAEFRKRAPQVEAKFVEMAGDSGQQLLNQFKQDLEDIKK
>NZ_CP011494.1|WP_048383846.1|310671_311262_-|TRAP-transporter-small-permease
MTENSPDLDDTGHYDSGLPGFLGTIDEWIAKIEAVMLAAGVILMALNTCVNVIARFVFGEGMFFSGEINRILIILVTFAGIGYAARHGRHIRMSAIYDAIPARGRKVLMIVIALFTAAMMFFLCYHSYGYIVTLYDRGRILPALGIEIWTIYVWAPIGFAVTGIQYLLTAVKNLTSKDVYLSTGLVDGYAETETEV
>NZ_CP011494.1|WP_048383844.1|309334_310621_-|TRAP-transporter-large-permease
MATILMVIMIGLLLMGFPMMIPLTTAAVVGFVMMFDGFGQMGTFIQQMMGGIRPASLIAVPMFILAADIMTRGQSADRLINMVMAFIGHIKGGLAISAATSCTLFGAVSGSTQATVVAVGSPLRPKMLKAGYSDSFTLALIINASDIAFLIPPSIGMIIYGVVSQTSIAELFIAGIGPGLMILFMFSLYCLLYAYKNNVPTEPKATWGERGRAVREALWPLFFPVIIVGGIYGGIFSPTEAAAVCVLYAFLLEFLIFRSLKLTDIYRIAKSTGLITAVVFILVAVGNGFSWILSFAQIPQAILESVGINEAGPVGVLVTICVAFFIACMFVDPIVVILVLTPIFAPAIQATGLDPVLVGVLITLQVAIGSATPPFGCDIFTAIAIFKRPYMDVIRGTPPFIAMLIVAAGLIIAFPQIALFLRDLAFPA
>NZ_CP011494.1|WP_048383843.1|308875_309319_-|universal-stress-protein
MFKRILVAVDGSKNSMNALDKAIGLQRLIPDVEIFLLCVYKHHSLFEASLSINRPDSMDIPDKVLSEYAKEIVNHAKEHAKGHEATHVRGFVKSGRPSKVIVQFARDKEADLIVVGTRGTHSDKDGMLLGSVSHRVTSHAKCPVLVV
>NZ_CP011494.1|WP_048383842.1|305334_306375_+|extracellular-solute-binding-protein
MKKLALAGILTAGLVGCSSEEPKVLNLYNWSEYMPQEVMTRFEEETGIQVVYTTYDSNEAMYARLKLLDDSAAYDLAVPSTYFVSKMRNEGLLMPIDRSKIEGFDQLDPELINLDIDKGNEYSVPYMWGTTGLGVDTATIDGEPVTAWADLWEERFNGRVILTNDMREVFHLALRVLGYSGNSTDPQQIKEAYEKLTELMPSVRTFNSDAPRMPFLEGEVDIGMIWNGEAVMGKDVLESLEYVYPEEGIIVWLDSFVIPKNAKNPDAAHKFISFVLRPEIAALISTEIGYATPVLPARELLDDSVAKDRASYPTAADMVNAEFQTDIGDEAMQIYAKYWEKLKSGR
>NZ_CP011494.1|WP_048383841.1|304570_305338_+|spermidine/putrescine-ABC-transporter-permease-PotC
MRWLPRTYLALIYLLLYIPIAVLVVFSFNDSRTGYSWGGLSLRWYESLFSNYAMMKALGNSLFLALTAATVSTLIGALTALALHRYRFRGKKALKGMLFVVMMSPEIVLAISLLGLFLLAGIQLGYVSLLLAHVTFCLPFVVITVMARLSGFDERLPEAARDLGASDFTMTRTVLIPAIMPALMAGWLLGFTLSMDDVVVSTFVSGPSYEILPLRIYSMVRVGLKPEVNALGTLLLVFSLVMLLLSQWILMRNKQ
>NZ_CP011494.1|WP_048383853.1|316476_317250_-|oxygen-insensitive-NADPH-nitroreductase
MTITANPTFNAAGNPVIDLLSRHRSIRKFTEQKIPAQLLSDLLHAGQCAATSSHVQAYTLIHVVDTAKRERLVELTGGQGYVASASDFFVFCADMKRPTEAAARAGAEIITGTTEQLLVASIDAAMMAQNLVVAAESEGLGICYIGGIRNDPAAVSDLLTLPDQVYPVFGLCLGYPDQDSQVKPRLPLSVIVKTDSYNSEQDNALIDGFDATMETYYSERLGGNKSSNWSKQLKPLFTSKLRLHLKEFLEKRGLGRQ
>NZ_CP011494.1|WP_048383855.1|317361_318411_-|cytochrome-c-peroxidase
MKKRLLAIAVIAGLGIMADASAADDLQQKAAAMFSAIPQYPPVIDGNEMTDAKIELGKMLFFEPRLSASHLISCNTCHNVGMGGHDYLPVSIGHGWQKGPRNSPTVFNAVFNAAQFWDGRAVDLAEQAKGPVQAGVEMNSTPERVEDTLNSMPDYVERFRQAFPGQGSPVSFDNMATAIEAFEATLITPDSNFDKYLRGNTDALNAEEQEGLALFMNKGCVACHAGTNLGGQDYYPFGLVTRPGDDILPPGDKGRFAVTATATDEYVFRAAPLRNIELTAPYFHSGAVWSLEEAVAVMGTAQLGSKLEESDVASITTFLKTLTGNIPVVQYPELPPSTDSTPRPQDMIP
>NZ_CP011494.1|WP_048383856.1|318632_318818_+|hypothetical-protein
MVKQSVEPNGGLLIKRCRQLWLHAGELMDTLRRALMVQIAKLTACAALMPLSSTAAAGIDD
>NZ_CP011494.1|WP_157035512.1|318857_319142_+|hypothetical-protein
MALLVWRPAMQEQIEKDSWMARLSGWVAPDQWQAPRWMLELGLELVGLCALVFLLGIMLYTGTEVAVLKYRLLWHTEWLPVKLVISGLFAAETY
>NZ_CP011494.1|WP_157035513.1|319160_319307_-|hypothetical-protein
MVEWVMVPMAWNQIDDSKVFHSNELIGSSAPDLLAELEKWAKGLKAMR
>NZ_CP011494.1|WP_053076094.1|319578_320406_-|thiol:disulfide-interchange-protein-DsbG
MASPATITASALAIHKPGRWQPLLMAALAAATLSASGIAFAQESYPPAVQLLIDRGVSIADSFEAPGGLTGYAGDMQGRPVAFYLTPDGNHIIVGPMLNASGDNLTEPKLQELVQGPLNQKAWAQMEDSAWVLDGSADAPVIVYTFTDPNCPYCHRFRQAAEPWIDAGKVQLRHVMVGILREDSLSKAATILGADDPQAALRNNQQSYSNGGIEVNRELVSANNKRITANNRLMSELGLSATPSTYYKDENGQIQMQQGLPRPEDMQIVMGSAQP
>NZ_CP011494.1|WP_048383864.1|320446_321259_-|TlpA-family-protein-disulfide-reductase
MLSVNLGPLNLPMGHLLLIFAFIVALITGAIAGRKEGVPIAGTLADIFLMALLTARIGFVALYFEYYRGDLLGIIDIRDGGFSVLAGIAGALVFIAWRMRRHARIRRPLAIAMTAGLISWGAIAGLIALMEQQTSSLPQASLATLDGKPVQLSELAPGTPMVVNLWATWCPPCIREMPILEQAQKDNPGVAFVFVNQGEQPETIRRFMQEQGLSLTNLMTDFGGSLGRNTGSHGLPTTLFYNAEGKQVDAHMGELSNASLASNLEQLEAP
>NZ_CP011494.1|WP_157035514.1|321560_321698_+|hypothetical-protein
MDESGLEEPSITRQGNDGILVQKPCVADPGSIRKLLDTTAKMTFH
>NZ_CP011494.1|WP_048383866.1|321951_323076_-|alanine-dehydrogenase
MIIGIPKEIKNNEFRVGLGPEAVQELVAHGHQVVVQASAGAGIDFTDEQYLAAGASLVVSAEEVFKQAELIVKVKEPQASERALLRPHHTLFTYLHLAPDVAQTKELLKSGATCIAYETVTDGKGGLPLLAPMSEVAGRMSIQAGARCLEKSQNGRGMLLGGVPGVQAAMVAIIGGGVVGFAATQMAVGMGARVVVLDKSMEVLRRFDAIFGNRVQTLFSCAKTIEETVLQADVVIGGVLIPGAAAPKLVTRELISKMKPGSVVVDVAIDQGGCFETSKPTTHADPTYVVDGVVHYCVANMPGAVARTSTYALNNATLPYVLQIANKGPRKALEDNEHLLNGLNVVKGQLTCPSVGVAQGIGSISPTQGLKLID
>NZ_CP011494.1|WP_048383868.1|323263_323752_+|winged-helix-turn-helix-transcriptional-regulator
MRKLDRIDLAILDELQTNARVTNHELSNRVNLSPTPCLERVRKLERDGYIKHYRAILHAGRLGMGLVVFVEVCLTRTGPDVFAQFKQAAIRVPEIQECHLVSGNFDYLIKARVADIEQYRTLLGETILALPGVKDSRSYIVMETCKEGQELDIKSLTDRAGS

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Crispr_ID: NZ_CP011494_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011494_2

1271161-1271267

Orphan

Consensus_repeat	Method
TCATAGTCTGATCTCCTTGTATTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011494_2

>merge|NZ_CP011494|2|1271161-1271267|CRISPRCasFinder
TCATAGTCTGATCTCCTTGTATTGGAGCAGTACAACGCCGACGAGTTTACGAGTGATTCGATTCGCAAGTCGCATATTAACGGTCATCGTCTGATCTCCTTGTATTG

>NZ_CP011494|2|2|1271161-1271267|CRISPRCasFinder
TCATAGTCTGATCTCCTTGTATTG	GAGCAGTACAACGCCGACGAGTTTACGAGTGATTCGATTCGCAAGTCGCATATTAACGG
TCATCGTCTGATCTCCTTGTATTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011494.1\|WP_048384681.1\|1282904_1283249_+\|YdbL-family-protein	unknown	unknown	gnl\|CDD\|377762
NZ_CP011494.1\|WP_048384663.1\|1260747_1262766_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011494.1\|WP_048384680.1\|1282575_1282791_+\|YnbE-family-lipoprotein	unknown	unknown	gnl\|CDD\|379294
NZ_CP011494.1\|WP_048384673.1\|1273549_1274233_-\|3-oxoacid-CoA-transferase-subunit-A	unknown	unknown	gnl\|CDD\|131482
NZ_CP011494.1\|WP_048384672.1\|1272921_1273563_-\|3-oxoacid-CoA-transferase-subunit-B	unknown	unknown	gnl\|CDD\|188219
NZ_CP011494.1\|WP_048384678.1\|1279069_1279687_+\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP011494.1\|WP_048384664.1\|1262808_1263186_-\|RidA-family-protein	unknown	unknown	gnl\|CDD\|100004
NZ_CP011494.1\|WP_048384667.1\|1265723_1267346_-\|BCCT-family-transporter	unknown	unknown	gnl\|CDD\|376718
NZ_CP011494.1\|WP_048384669.1\|1268414_1269854_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143415
NZ_CP011494.1\|WP_048384665.1\|1263226_1263994_-\|DUF3726-domain-containing-protein	unknown	unknown	gnl\|CDD\|372163
NZ_CP011494.1\|WP_048388729.1\|1271500_1272850_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011494.1\|WP_048384661.1\|1257614_1258349_+\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|168162
NZ_CP011494.1\|WP_084708279.1\|1274260_1276114_-\|TRAP-transporter-permease	unknown	unknown	gnl\|CDD\|273983
NZ_CP011494.1\|WP_048384675.1\|1276281_1277439_-\|TAXI-family-TRAP-transporter-solute-binding-subunit	unknown	unknown	gnl\|CDD\|273982
NZ_CP011494.1\|WP_048384668.1\|1267423_1268401_-\|membrane-dipeptidase	unknown	unknown	gnl\|CDD\|366534
NZ_CP011494.1\|WP_048384670.1\|1269966_1270851_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176131
NZ_CP011494.1\|WP_048384676.1\|1277775_1278630_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224332
NZ_CP011494.1\|WP_048384662.1\|1259208_1260369_-\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|224890
NZ_CP011494.1\|WP_048384679.1\|1279701_1282551_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378703
NZ_CP011494.1\|WP_048384666.1\|1263990_1265727_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP011494.1\|WP_048384681.1\|1282904_1283249_+\|YdbL-family-protein	gnl\|CDD\|377762	pfam07027, DUF1318, Protein of unknown function (DUF1318). This family consists of several bacterial proteins of around 100 residues in length and is often known as YdbL. The function of this family is unknown.	1.10403e-31
NZ_CP011494.1\|WP_048384675.1\|1276281_1277439_-\|TAXI-family-TRAP-transporter-solute-binding-subunit	gnl\|CDD\|273982	TIGR02122, 31_kDa_immunogenic_protein_precursor., TRAP transporter solute receptor, TAXI family. This family is one of at least three major families of extracytoplasmic solute receptor (ESR) for TRAP (Tripartite ATP-independent Periplasmic Transporter) transporters. The others are the DctP (TIGR00787) and SmoM (pfam03480) families. These transporters are secondary (driven by an ion gradient) but composed of three polypeptides, although in some species the 4-TM and 12-TM integral membrane proteins are fused. Substrates for this transporter family are not fully characterized but, besides C4 dicarboxylates, may include mannitol and other compounds. [Transport and binding proteins, Unknown substrate].	4.57776e-56
NZ_CP011494.1\|WP_048384673.1\|1273549_1274233_-\|3-oxoacid-CoA-transferase-subunit-A	gnl\|CDD\|131482	TIGR02429, 3-oxoadipate_CoA-transferase_subunit_A, 3-oxoacid CoA-transferase, A subunit. Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.	1.96671e-120
NZ_CP011494.1\|WP_048384672.1\|1272921_1273563_-\|3-oxoacid-CoA-transferase-subunit-B	gnl\|CDD\|188219	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The A subunit represents a different clade in pfam01144.	2.84286e-108
NZ_CP011494.1\|WP_048384678.1\|1279069_1279687_+\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	3.82507e-28
NZ_CP011494.1\|WP_048384664.1\|1262808_1263186_-\|RidA-family-protein	gnl\|CDD\|100004	cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	8.8039e-27
NZ_CP011494.1\|WP_048384667.1\|1265723_1267346_-\|BCCT-family-transporter	gnl\|CDD\|376718	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter.	3.19963e-167
NZ_CP011494.1\|WP_048384669.1\|1268414_1269854_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143415	cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like. Kinetic studies of the Bacillus subtilis ALDH-like ycbD protein, which is involved in d-glucarate/d-galactarate utilization, reveal that it is a NADP+-dependent, alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH). KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. Interestingly, the NADP+-dependent, tetrameric, 2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an enzyme involved in the catabolic pathway for D-arabinose in Sulfolobus solfataricus, also clusters in this group. This CD shows a distant phylogenetic relationship to the Azospirillum brasilense KGSADH-II (-III) group.	0
NZ_CP011494.1\|WP_048384665.1\|1263226_1263994_-\|DUF3726-domain-containing-protein	gnl\|CDD\|372163	pfam12525, DUF3726, Protein of unknown function (DUF3726). This domain family is found in bacteria and eukaryotes, and is approximately 80 amino acids in length. There is a single completely conserved residue E that may be functionally important.	1.86607e-09
NZ_CP011494.1\|WP_048384661.1\|1257614_1258349_+\|glutamine-amidotransferase	gnl\|CDD\|168162	PRK05665, PRK05665, amidotransferase; Provisional.	2.42432e-60
NZ_CP011494.1\|WP_084708279.1\|1274260_1276114_-\|TRAP-transporter-permease	gnl\|CDD\|273983	TIGR02123, conserved_inner_membrane_protein, TRAP transporter, 4TM/12TM fusion protein. In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria. [Transport and binding proteins, Unknown substrate].	3.63963e-173
NZ_CP011494.1\|WP_048384668.1\|1267423_1268401_-\|membrane-dipeptidase	gnl\|CDD\|366534	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19).	2.21257e-95
NZ_CP011494.1\|WP_048384670.1\|1269966_1270851_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176131	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.3728e-61
NZ_CP011494.1\|WP_048384676.1\|1277775_1278630_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	1.62875e-35
NZ_CP011494.1\|WP_048384662.1\|1259208_1260369_-\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|224890	COG1979, COG1979, Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion].	0
NZ_CP011494.1\|WP_048384679.1\|1279701_1282551_+\|hypothetical-protein	gnl\|CDD\|378703	pfam11739, DctA-YdbH, Dicarboxylate transport. In certain bacterial families this protein is expressed from the ydbH gene, and there is a suggestion that this is a form of DctA or dicarboxylate transport protein. Dicarboxylate transport proteins are found in aerobic bacteria which grow on succinate or other C4-dicarboxylates.	4.48537e-59
NZ_CP011494.1\|WP_048384680.1\|1282575_1282791_+\|YnbE-family-lipoprotein	gnl\|CDD\|379294	pfam13617, Lipoprotein_19, YnbE-like lipoprotein. This family includes lipoproteins similar to E. coli YnbE. Protein in this family are typically 60 amino acids in length and contain an N-terminal lipid attachment site, which has been included in the alignment to increase sensitivity. The specific function of these proteins is unknown.	3.5313e-14

>NZ_CP011494.1|WP_048384670.1|1269966_1270851_+|LysR-family-transcriptional-regulator
MPPELKIQQLRYVITVVEEGSFHAASRRLHRTQPALSMAVRELEQKLGQNLLERGSKVRLTPFGEYCLPRFRDLVNQHDRMTRDVAAHADGREGHIHIATVPSVASRIMPSFLARFITRFPDVNISLHDENAHYVCQMVTNGEVDLGITSLWQNSEELHYRHLFEDKIGVVCRRDHALAQHKTLDWQHLRGEKLIGNGTSRLLMSTAAAELVENSAFYISNMISLLAMLEAGAGVTTLPQLAFPEQSASLCFIPLHNPDVVRRIGLVKSANRTLAPAAQAMEAFVLEQLWADAV
>NZ_CP011494.1|WP_048384669.1|1268414_1269854_-|aldehyde-dehydrogenase-family-protein
MSTSHPLYINGQWVTGAKRITNTSPSDLTDVIGEYDQASAEQTQQAISAARQGFAQWSKSGLEQRYKVLMAIGDELIARQQELGELLSREEGKPLAEGKGEVYRSGQFFHYYAAEVLRQIDERADSVRPGVEIDVRREPLGVVGVISPWNFPMATAVWKIAPALAFGNAVVFKPANLVPASAWALTEIISRQEFPAGTFNLVMGSGGETGEALINSPQIQALTFTGSLEVGRRIASATVANLVKCQLEMGSKNALIVVDDADVDLAVEAAFNGSYSGSGQKCTASSRLIVTDAVHDEFVSKLIARLEKATVGHALHEGVQIGPIADKRQLDSNMAWIERAQADGATLVFGGNRVEMATEGYYMEPALFTDTTNDMAINRDEVFGPIACVIRVADYEAALTTLNDTQYGLTGGIITNSLKLASDFKARAETGCVMVNLATAGTDYHVPFGGRKNSSFGPREQGQYAREFYTVVKTCYVRA
>NZ_CP011494.1|WP_048384668.1|1267423_1268401_-|membrane-dipeptidase
MLTIDGLQYSNWSREIFEQMRAGGVTAVHATLVYHENTRETLTRFGEWNRRFEQHSDLIMPVYEPADIQRAHASNRIGVFFGAQNCSPIEDDIDMIAVMRRMGLMIMQLTYNNQSLLATGCYEAQDNGITRFGRQAIAEMNRTGMIIDMSHSSEKSTLEAIKLSTRPVIISHANPSTFHAAKRNKSDKVLKAIAESGGLLGFSVYPFHLKDGPDCTLESFCDMVADTANLMGIEHIGLGTDLCQGQPQTVLDWMRNGRWSKEMDFGEGNKGNAGWPRPLTWFQDNRDFPAIIEGLRKKGFNETDVQKIMGLNWLKQLEEGTTPAI
>NZ_CP011494.1|WP_048384667.1|1265723_1267346_-|BCCT-family-transporter
MKNNNIKAGGDYSIAQLGDPVLLALSVGFIVLFVGFSLFDLKGVADLIGTGFAWTAKVFGTYFQILLLATFFIAIGVACSPAGRAKIGNLDRPEMSTFRWLSIIMCTLLAGGGVFFAAGEPIYHFVVTPPAFTSEPGTAAAVSNAMAQSFMHWGFLAWAVLGTLAAIVLAHAHYVNDKPLQPRTLLYPVFGERIMSGWLGSVVDACCVIAVVAGTVGPIGFLATQMSFGLSELFGLTDGLGTQMAILAVLAAIYVTSAVTGIHRGIQVLSRLNVFLALAVAAIIFIFGPTLFLTNTYFQSMGQYVSSFMEMATMTSETAPAWWMKWWTVFFFAWFIGYAPLMAIFVARISRGRSIREMIMAVAVMAPIATTIWFTLLGGSGIYYQMTGVIDLADALNNFRFDVATLTVAQALPGGSFMALAILVLTTIFVATTGDSMSYSIAVVSSGHDDPNTFVRAFWGLAMAGMAGVLLYMGAGQISVLQQFIVITAIPVSLVLLPSLWLGPKAAYAMAREQNLIPQLSGATSAKGSVTLEEHSKVRS
>NZ_CP011494.1|WP_048384666.1|1263990_1265727_-|hypothetical-protein
MSWADTLSTTDNLRPADQVMQLDRLGSMFASRLSFARSLVRKMIKERWQISNTVFDLNDQGHGTAIYRITTPQGLYHCVIFCRELRAEQRSDRVIAEAWDATFAIVEGDVEAELLQNMADNVPLQEAGRLSSRVLVLSRANKSLRNFSQFVAALAVGEQPDPAALTAVGYLYRTTAVYGNGKFGIADFARLERNTDLNRPFSAQMLAVYVLRLFSIEQLNHLARVQAPDTAAELAPELQRYLGIGNSTGLGMAPFLINHPQLIQQWIYGRERALACARLQPASDKCRNKLLALMLRAHRYLQQTVTEDQAQTQRNRNIVQSVQKVIDWLERTPAHPALYRELTDWAGEHSSVEAQELINTLLIEMYPELVDSLDDELGCHETMDLQPDMKVRKLKELIEQSFAWALSYSEESAEDNYWFWYRSAEKEEPRLGVRAEESGAEKETALAIGPRISRCYTLLTEFVQNNPGAMVVEFLMAHPKQKEIVRRIQTMAATPYGEIRANLWHRDMKPMHLLRTKLSFFGAGRFDPKSDRWVRITLFQGAPLGVELTNPALSLDQLDDWSFPIQPERQHGKQAEAP
>NZ_CP011494.1|WP_048384665.1|1263226_1263994_-|DUF3726-domain-containing-protein
MKVSFNELQGLSRKAFSGVGFDDGDASDAADMVVWMEAHGLNGIQSLKRSLAFILEEDQSHSPEIIYQDADLCVVDAHNRTALNNASLAIELGYVKCRARGLSVTKIRHCHNRMLIVGYLSRVARRNMSVTAFWRDSHQPLTEILVSFKAGEEAPEICMYSLDDIPDDTEPNDGITLVMVNHVNLMPDFKADQTLNNLLHQDKHSMNNWQEHALAEGIEVEPEMWDRLKELAIRILVESSDDSRQGAGAGTSDND
>NZ_CP011494.1|WP_048384664.1|1262808_1263186_-|RidA-family-protein
MNPYPVNTNLPASKSPLAWATVGNGILFTAQIPIDAEGNVVDGGIEPQIKQTLANLKHTLKSAGTSVANLTQVLIYVTDRDDLAAVNREYATFVAEPFPNRAAIIVSGFARAEMLVEIVAYAVVP
>NZ_CP011494.1|WP_048384663.1|1260747_1262766_+|hypothetical-protein
MNDYQLSSTVVVVSLDKLVAKLDDAIRALEQSESLAKFGKLPRVFGTARRVLLQPGGCEAVEARIQRIEQAGVFEGTDWAEPGLLVPALTTYSLQSTNADTVVIEAFSELRLLAVVRESYLHPAVSADQARHYLIQVLSINLGLLFGMTGEAEREQGELSLISEAVVQYVAQNIGYEHVIENLIEEIWRILQQRPIRVSGVRKMITQIAICRADPNVDLGAAGGGAERLISSLYGPTRACSEDPGTVVYEQRLQAMDAQNLQNEATGFARSMHDTGLVSPYHASFVRFIMDEGQDALLSAALGLSSTGRDCLLCYRELVHTLITEGIFAETAQGLYGLALLLERGILYQPPVAPALWRQAKLSLSPQARERLQLAYGYQPQANAWLIQGVLNMLGQPLGVGQGNNPTCQSARALSMWAYNDPDYLLQMVTWAARDNEIVMHFEGVPVSSARSAAGLAAEVTFDLDPVSLVVVPHLDRIYVEMGRLCIGREGDPHRWVNPEFHGWSAGRGFAINVDVATGNLDNLDGFLRHFYASYHPYYNGNQPLIHPQPAGIAVTDRAGRFIGWHAITILRVALDPEGQMRAYFFNPNNDSGQDWGDGVLVSTSGCGERFGEGSLLFEAFASRLYIFHFDPLERGELADVDQEELQRVVERIYRSWGASRLPAALQAEPPV
>NZ_CP011494.1|WP_048384662.1|1259208_1260369_-|iron-containing-alcohol-dehydrogenase
MNNFDFHNPTRIVFGEGKIAQLDALVPSNARVMVLFGGESARSTGTLGEVTAALGKRDIHEFSDIEPNPSFETLMRAVTRVRDEKIDFLLAVGGGSVIDGTKFVAAAALFEGDEWDILLQGGGNIDKALPFGAVLTLPATGSEMNQGAVVTRKSLKTKLPFRSQHVFPKFSILDPTKTFTLPPRQVANGVVDAFVHVMEQYLTYPAQAPVQDRFSEGLLQTLIEIGPQCLAEPENYQVRASLMWTATMALNGLIGSGVPQDWATHMLGHELTALHNLDHAQTLAIVLPSMLRERKAAKQAKLVQYAERVWNMTEGSAEQKADAAIDKTQAFFESMGVKTHLADYQLGEEHIDELIDGLKKNGMNKLGENGDVTPDMCRRVLQRSLR
>NZ_CP011494.1|WP_048384661.1|1257614_1258349_+|glutamine-amidotransferase
MTLKVGILAAGITPDNLLAEFGSYADMFKDLFKRAGYEFDYATFDVRDDDFPGSASDCDAWIITGSKANVYQDLPWMRRLKLLILDIYKVDRPMLGICFGHQIIAEAFGGSVDKYSEGWGAGLHHYELLPGVSAVKPNSNEFTLSAMHQDQVVVKPDRANVLAFSAFCPFAALQYDNRILTFQAHPEFDVTFETRLVRHLRGQSLPESNADQALEELGAPAATTDSLAIAGWMARFVLRNQENF
>NZ_CP011494.1|WP_048388729.1|1271500_1272850_-|hypothetical-protein
MSRNTAASLLNLRSTLTYLALGAGVLSFLPELGVLGAIAIFSAIILGWRDLRLVARLLFGLLTIMTIIAIAIEPSALIGAATSMTRLTALIITVMLLSSMLGKSADLGLISKSLFTGSPLARYYSVTFGTAFLSMPLNFGSVGVVATMIQSEKDQQGDSAITRNASRGALRGFGASPIFSPLSISIVLTVTLVPALHSWQIIAISLPLAVSYLLIGALFLEPESPGYQPVEAPEQSTRLARMAPWLRFAAVIGAICGATFAFSGYFDLSYSRAVTLSCLGAVVIGLAHRRLQGSKITLPSMAPISNELVIVGGSAFLGVLISTFAIQWLGAGFNLPGWAYPMVAFVIPSVFFLGGMIGFNPIVIGTLTGGVLGPIWPVSAVLGLGIAMVSGWGLTTAGTPYSANSLLLERLTGYSAQVASLRWNMALSVCCLLFAGALAAAITLVKTGL
>NZ_CP011494.1|WP_048384672.1|1272921_1273563_-|3-oxoacid-CoA-transferase-subunit-B
MIRLNMNEMASRVAQDIPDGAYVNLGIGMPTSVANFVSDDKQVIYQSENGILGVGPAPEPDKIDPDLINAGKQYVTLLKGGCYFDNAESFAMMRGGHLDIAVLGAFQVSATGDLANWATNDDKFPPAVGGAMDLAVGAKQLFVLMRHTTKTNEPKILEQCEYPLTGAGVVKRIYTDLAVIDVTDEGLRVRELYGDNTLAEVQALTAATLLPPL
>NZ_CP011494.1|WP_048384673.1|1273549_1274233_-|3-oxoacid-CoA-transferase-subunit-A
MINKICESLRAAVADIEDGSVVMIGGFGNSGIPMQLIEALRLHGARELTIVSNNAGTAEEGIASLLRDGLVRKMVCSFPRSSGSIWFERLYEEGKIELELVPQGTLAERIRAAGAGLGGVYTPTGYGTRLADGKETKVINGKGYVLETAMPADVALIKAHRGDAWGNLIYNTAGRNFNPIMATAARITIAEVNAVVEVGELDPEHVVTPGIFVDRVVVQKVQQHDTA
>NZ_CP011494.1|WP_084708279.1|1274260_1276114_-|TRAP-transporter-permease
MGLGTLGLLMAINQTFNLKILGFQPLGNAYLYYLIGVFLAAAFLCFPAWSGARHRVPWYDWPLALAALGACGYLGYHGLIMIQLGWDYMAPIEATAASAVLLVLVLEGVRRCGGWPLLAVALLFGTYPLYAGSMPGFLWGNEYGLAETIRAHVMGVESIIGIPMQVVAQLVIGFVVFGAALTVTGGGEFFMRFSTALMGRSRGGPAKVSVLSSGILGSLSGSVISNILTTGPITIPTMKKTGYPAHYAAAIEACASTGGTLMPPIMGAVAFIMASFLGVPYSEIIIAAFLPALLFYLALIFQVDIYAAKRGLKGMPEADIPSMKETLKDGWPYLFSLAMLIYMLLFMRLEAYAPYYATVVLLGISMFKRRHRLNLKRALAFILDLTTSVSNLVAILAGIGLVVGGLSYTGVAGAFSRELLLYADGSIPLMLAAGAVTSFVLGMGMTVSACYIFLSILLAPALVNAGLNPLASHLFILYWGMMSYITPPVALAAITAAGVAGANASKTGLYAMRLGGILFILPFLFVLNPSLILQGALSDILVSVVTAVTAIWLMASAMEGYLYRVGVLAWPLRILVMISGVVLIYPDIVTDAIGFSLAGLIYAWHQWVRRPMSLKPG
>NZ_CP011494.1|WP_048384675.1|1276281_1277439_-|TAXI-family-TRAP-transporter-solute-binding-subunit
MIHSFALRRPLLTATAATVLTTMMTLGATAVSAETALPDTMTWSSYDVGSAGYAEASAIADAFGKKYGTRIRIQPSGSAIGRLQPLISERADFSFLATETFFAAEGIHDFSTRRWGPQDLRAVAGRPSSFGIFTAADANIKTLKDLKGKRFAYVAGNPSINVKCDAFLAFAGLTRDDVEAIMFPTYGNTMSALARNEADASCTTTTPSHVYELAESPRGIRWLEVPAEDTEGWARLKAVAPFFQPSTETIGAGISEENPVDILAYRYPVLTVRADTDPELVYTFIKALDETYDMYKDATAVMPRWRLSEAGTPAIDVPFHAGAIRYLKEKGIWTEEHQAWNDQRTERLNALRDAWPKALAEAEGKSDEEFATIWEKHRLETLSSL
>NZ_CP011494.1|WP_048384676.1|1277775_1278630_-|helix-turn-helix-domain-containing-protein
MTTENNQTKVRPFTSSTTLAKASLLLRTVAKIFPTGGTLSRIAREVGMNTATAHRLLTALAHEGLLNFDPYAKTYHVGFELLQIAESAQAVAPDLKLRHHLRPMLASIARRTEESTYLSILANRDSVCIDLAEGTYPISANTLVAGARRPLGIGAGAMALLAALPLKEGNQMVIKNQERYERYSGITPAEVGYGLSECRRLGFAFNNGRIVPEVAALGVAFKVPDSEHRVAISVASVVSRMHAERRQLVIGVIRDEIRQWISQTVDHPALTGSCVGSHFQHSLE
>NZ_CP011494.1|WP_048384678.1|1279069_1279687_+|Crp/Fnr-family-transcriptional-regulator
MSQHSILHTLAPQLRQQFAEQTQVMTFPSGQVLFNPGERCQGLPLVLSGVVKVQMTGASGNSIVLYRMGANDICTLSIGCLMTGFGYRAEANVEDEAEVIMVPRPLFDRLMDQSDGFRQGIMESYGRRLDDLMLLVEEVAFRRMDERLNEWLQARAERSPLLITHQDLAIELGTAREVVSRLLKELERKNQVRLARGRIDILMDK
>NZ_CP011494.1|WP_048384679.1|1279701_1282551_+|hypothetical-protein
MNAGRKHKIRPRVIILLLIVLLALLTGAFWVKHSWEAMLAKNNIEQVQWRGTRLGLYGVSVAELTVIQLGHERRLTIDTRDITLGWRWGDGSQWQWKNGLLQLSTFNAQQMELEIVATEPAPAVDAFSATPAFSVFEHMPPQLPLQLPSWLPSRIRVQQFQAILPCVSGSCLLQGALDIQQSAQETGNGFPINASLSLEHQGHRVDFVAEFAAIKELSLIKGPVSVKEKALIEGSALMGKDSAAPGEQGLQMSATVDIDRTRNLTLETRYRPLVSGTEIHWQGSLAVPELPNAEWLIAWVQSWTPLPREASFAQPEQGSVNVRWDLQGPRQSFFAKATGTVNAEARVPQPWPVPGLGSVKGNLALTLALSQGNWQPQTLSADLVLTQPAQWAATLPAQLRPQQLELSVRPASALSGTASALPGVNETGVNKNATNAPLPLQVALRSRGAADINVDAHLAISTSAPWQVQLARSRLTANRDRLDIGQWRIDKPKLDLLMSGELTLTGANLTFAPSSRVSATQVKSLDGEDAEALELQNPQLTLTGNNLSAGFNTAQATLESLSFGGPLDISVEQIKHPQLLTQGWKFNGKTKTDTNSLQWSGIARANSGTSANIDLKVPYGSAASQAVDMNAQTRVSGKREIDGLGRVLVAWPELLDASGGTISANVNAQRLPGQPLVVDGKLVFLDVGGTWDRTAWRNMNGTVEVTLKSDQFQVSTSQLTLDEINPGVPIGPVVLAGDYLAPAQQPMAGQLTLTQANAGALGGQLNIASGRWDLASAPVTVPLELDRLDLAQLLRVYPAEGLAGSGMLSGSIPLLIDLATGVRVKRGRLGALEPGGELQLSAERLRALGRKNETMELVTRALENFRYSALSSDIDYDENGTLMLGLHLRGNSPEVGDGRAVVLNITIEENIPALLTSLQLSGRVTDAVAERVEKLLEKREREAAEDLIK
>NZ_CP011494.1|WP_048384680.1|1282575_1282791_+|YnbE-family-lipoprotein
MTYAGLNAFRPLTAMLAGLLLATVVSGCTPTVRVQAPQEPITVNLNVKIQHEIYVKIDKDVDELFSEKGLF
>NZ_CP011494.1|WP_048384681.1|1282904_1283249_+|YdbL-family-protein
MTIYQRIAALLLTMSLSIPAFAMSLDEAKNALDSAKSQGLLGETPSGYLAPVTPDTRARDIAEAINDARREAYTGIAQKNGIAVSKVEAVAGQKAVEKTPAGQYIEMDGRWVKK

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Crispr_ID: NZ_CP011494_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011494_3

2213563-2213641

Orphan

Consensus_repeat	Method
TAGGGACAGATTTAAAATCTGTCCCT	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP011494_3

>merge|NZ_CP011494|3|2213563-2213641|CRISPRCasFinder
TAGGGACAGATTTAAAATCTGTCCCTGGTTCGTGGTTTTTGGCTCGGCAACACTAGGGGCAGATTTAAAATCTGTCCCT

>NZ_CP011494|3|3|2213563-2213641|CRISPRCasFinder
TAGGGACAGATTTAAAATCTGTCCCT	GGTTCGTGGTTTTTGGCTCGGCAACAC
TAGGGGCAGATTTAAAATCTGTCCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011494.1\|WP_048385775.1\|2208363_2208678_+\|SCP2-sterol-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|376720
NZ_CP011494.1\|WP_048385793.1\|2221297_2222092_+\|enoyl-ACP-reductase	unknown	unknown	gnl\|CDD\|223696
NZ_CP011494.1\|WP_048385782.1\|2211815_2212598_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NZ_CP011494.1\|WP_048385777.1\|2208750_2210460_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011494.1\|WP_048385769.1\|2205575_2205818_+\|DUF2970-domain-containing-protein	unknown	unknown	gnl\|CDD\|378581
NZ_CP011494.1\|WP_048385791.1\|2219574_2221194_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226641
NZ_CP011494.1\|WP_048385779.1\|2210634_2211345_-\|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235574
NZ_CP011494.1\|WP_048385798.1\|2224594_2225671_+\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|237190
NZ_CP011494.1\|WP_084708319.1\|2222230_2222659_-\|PilZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|377796
NZ_CP011494.1\|WP_048385767.1\|2201847_2205546_+\|methionine-synthase	unknown	unknown	gnl\|CDD\|236539
NZ_CP011494.1\|WP_048385780.1\|2211378_2211819_-\|ribonuclease-HI	unknown	unknown	gnl\|CDD\|178927
NZ_CP011494.1\|WP_048385789.1\|2218529_2219573_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226690
NZ_CP011494.1\|WP_048385771.1\|2206025_2207045_-\|YhdH/YhfP-family-quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176183
NZ_CP011494.1\|WP_048385800.1\|2225745_2227020_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP011494.1\|WP_048385786.1\|2215574_2217443_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173862
NZ_CP011494.1\|WP_048385796.1\|2222645_2224481_-\|DUF1631-family-protein	unknown	unknown	gnl\|CDD\|377917
NZ_CP011494.1\|WP_048388938.1\|2213794_2215534_+\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|182727
NZ_CP011494.1\|WP_048385784.1\|2212748_2213552_+\|hydroxyacylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|274569
NZ_CP011494.1\|WP_048385773.1\|2207093_2208182_-\|protease-SohB	unknown	unknown	gnl\|CDD\|236978
NZ_CP011494.1\|WP_048385788.1\|2217443_2218526_+\|microcin-C-ABC-transporter-permease-YejB	unknown	unknown	gnl\|CDD\|226642

Protein	Function_ID	Function_description	E-value
NZ_CP011494.1\|WP_048385775.1\|2208363_2208678_+\|SCP2-sterol-binding-domain-containing-protein	gnl\|CDD\|376720	pfam02036, SCP2, SCP-2 sterol transfer family. This domain is involved in binding sterols. It is found in the SCP2 protein, as well as the C-terminus of the enzyme estradiol 17 beta-dehydrogenase EC:1.1.1.62. The UNC-24 protein contains an SPFH domain pfam01145.	1.61096e-17
NZ_CP011494.1\|WP_048385793.1\|2221297_2222092_+\|enoyl-ACP-reductase	gnl\|CDD\|223696	COG0623, FabI, Enoyl-[acyl-carrier-protein].	3.53691e-150
NZ_CP011494.1\|WP_048385782.1\|2211815_2212598_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	4.65956e-08
NZ_CP011494.1\|WP_048385769.1\|2205575_2205818_+\|DUF2970-domain-containing-protein	gnl\|CDD\|378581	pfam11174, DUF2970, Protein of unknown function (DUF2970). This short family is conserved in Proteobacteria. The function is not known.	6.71169e-20
NZ_CP011494.1\|WP_048385767.1\|2201847_2205546_+\|methionine-synthase	gnl\|CDD\|236539	PRK09490, metH, B12-dependent methionine synthase; Provisional.	0
NZ_CP011494.1\|WP_048385791.1\|2219574_2221194_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226641	COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only].	0
NZ_CP011494.1\|WP_048385779.1\|2210634_2211345_-\|DNA-polymerase-III-subunit-epsilon	gnl\|CDD\|235574	PRK05711, PRK05711, DNA polymerase III subunit epsilon; Provisional.	6.86237e-139
NZ_CP011494.1\|WP_048385798.1\|2224594_2225671_+\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|237190	PRK12755, PRK12755, phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional.	0
NZ_CP011494.1\|WP_084708319.1\|2222230_2222659_-\|PilZ-domain-containing-protein	gnl\|CDD\|377796	pfam07238, PilZ, PilZ domain. PilZ is a c-di-GMP binding domain which is found C terminal to pfam07317. Proteins which contain PilZ are known to interact with the flagellar switch-complex proteins FliG and FliM. This interaction results in a reduction of torque generation and induces CCW motor bias. This domain forms a beta barrel structure.	1.08328e-05
NZ_CP011494.1\|WP_048385780.1\|2211378_2211819_-\|ribonuclease-HI	gnl\|CDD\|178927	PRK00203, rnhA, ribonuclease H; Reviewed.	3.0803e-95
NZ_CP011494.1\|WP_048385789.1\|2218529_2219573_+\|ABC-transporter-permease	gnl\|CDD\|226690	COG4239, COG4239, ABC-type uncharacterized transport system, permease component [General function prediction only].	0
NZ_CP011494.1\|WP_048385771.1\|2206025_2207045_-\|YhdH/YhfP-family-quinone-oxidoreductase	gnl\|CDD\|176183	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	3.26374e-160
NZ_CP011494.1\|WP_048385800.1\|2225745_2227020_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP011494.1\|WP_048385786.1\|2215574_2217443_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173862	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP011494.1\|WP_048385796.1\|2222645_2224481_-\|DUF1631-family-protein	gnl\|CDD\|377917	pfam07793, DUF1631, Protein of unknown function (DUF1631). The members of this family are sequences derived from a group of hypothetical proteins expressed by certain bacterial species. The region concerned is approximately 440 amino acid residues in length.	4.97248e-07
NZ_CP011494.1\|WP_048388938.1\|2213794_2215534_+\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|182727	PRK10783, mltD, membrane-bound lytic murein transglycosylase D; Provisional.	1.888e-116
NZ_CP011494.1\|WP_048385784.1\|2212748_2213552_+\|hydroxyacylglutathione-hydrolase	gnl\|CDD\|274569	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753). [Cellular processes, Detoxification].	4.56221e-126
NZ_CP011494.1\|WP_048385773.1\|2207093_2208182_-\|protease-SohB	gnl\|CDD\|236978	PRK11778, PRK11778, putative inner membrane peptidase; Provisional.	0
NZ_CP011494.1\|WP_048385788.1\|2217443_2218526_+\|microcin-C-ABC-transporter-permease-YejB	gnl\|CDD\|226642	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only].	0

>NZ_CP011494.1|WP_048385784.1|2212748_2213552_+|hydroxyacylglutathione-hydrolase
MLTISAIPAFNDNYIWCIADPHRHNALIVDPGQAQPVLDHLAQQGLTLTVILITHHHPDHVGGVKALRETYPDCRIIGPADSPFKGSTNPIHPGDTALWEGITFTSMAVPGHTLDHIAFFTDDTSITGRPLLFAGDTLFVSGCGRLFEGTPAQMRQSLESLRQLPDNTAVYCAHEYTLANLRFARSWLPQSSALAEFEQQCEQARANNTATVPSTLAQEKRLNLFLRWDDPDVIRVAESYAGEHKLPINCPDDVFAAIRHSKDHFRG
>NZ_CP011494.1|WP_048385782.1|2211815_2212598_-|class-I-SAM-dependent-methyltransferase
MKLEEAIDYQARHDSFEQWFQTPLGRALLADQRQYLDHKLASHTGARQLQVGVSHRLPLATGTDFLQRIITVPQWHSDISGGVAVCDADELPFPGDSMDLVILPHTADFSRFPHQVLRESARVLRGEGCIAITGFNPFSVWGLRRLLSGRFGRPSGGPWGGLFIPAGRMEDWLRLLGFQIEHSVTRFYGLPLQRWARNSVQQQPSGFMPGGAYYCILARKRELARTPGRRAWSKSKVIRLAGSRPVGVARTSHKNDQESE
>NZ_CP011494.1|WP_048385780.1|2211378_2211819_-|ribonuclease-HI
MSGNVIMYTDGACKGNPGRGGWGVVLRWGEVCKTLHGGEQHTTNNRMELMAAIEGLKALKRDCDVELYTDSQYVRKGITEWLAGWKRNGWKTAAKKPVKNDDLWKALDEQSERHRVNWHWVKGHAGVPDNELADQLANQGVEELNG
>NZ_CP011494.1|WP_048385779.1|2210634_2211345_-|DNA-polymerase-III-subunit-epsilon
MRQIVLDTETTGINPNEGHRIIEIGCIELVERALTGRNYHVYVNPGREVEAEAVAIHGITNEFLADKPLFAVVADEFFEFIRGAELVIHNAAFDVGFMDAEFGRLDGGRKTAEHCGIVDTLAIARKRHPGQKNNLNALCKRYGVDNSNRELHGALLDAEILADVYLLLTGGQTALLLDSGSGEGAYGDGIRRVQAARDALQVIRASADEDLAHREFMAMMEKKAGSTVWSQVLGAE
>NZ_CP011494.1|WP_048385777.1|2208750_2210460_-|hypothetical-protein
MVQSSLATKSQSFDLVKSEIEQTIRQAENGLARFQENRESEEDLQNCLDCLNQLRGIFTLVELRGGTLLCEEAVSTCNNVPVGAATDKNILLTTLNKALFVLRRYVEYHHNQRQDHPNLLLPVINELREARNEAVYPESWHFKLDLAQRPDFCKGMKLRPVADYTKNYDIMARRMRLTYQVALLGILHERNDAVTKKLISRAARGFARLCNGKPQGQLWCLVEIVADTMLDRAMMFSKARKRLFMAVEKYARQLVYVGADSANKPIPDDLLTDLVYLLHCSGSANPEVAQVLQAFRLAPTEFSDAILEAHSRKLYGPGSDVLKSLSEAMQDELNQLKDKLDIIERGIEPDLAELGSIAETLEKLANTLVMLDLKRLATTANKEAVKLRQLERETRLPDETELHSLADSVLGIEEVVLQIANRGISNDADMASVNPSDSREESLCLREAVWVVADEARNALTLAKRAITAFIESDYDKLHLANVPTTLHTIWGGLVMINDPDAAELLERVGDAIQHQLLDNREPPSEQVLEAMADALTSLEYYIGNIGKHEPGNADLLRLAKTSLDEVRL
>NZ_CP011494.1|WP_048385775.1|2208363_2208678_+|SCP2-sterol-binding-domain-containing-protein
MSVEKIFEKLEQSFNAEAAQGLELVFQFNIEDDKTYHLVINDGTCKLHEGAHDDPSVTLIMNSETLEDVVSGETDGMQAFMAGQLRAEGDMMLATKLGDLFKMG
>NZ_CP011494.1|WP_048385773.1|2207093_2208182_-|protease-SohB
MEFLADYGLFLAKAVTLVLAVVVIITLIISAAQREKSGEHEDGELRIRKLNDNYRKLREGIEARLMTDLDRKAFAKLRKKEEKAERKAEKVKAKAKSAKSDTTEIADDAVKTRVFVLDFDGDIKASDTEGLRRAITAVLSVAKPEQDEVVVRLESGGGMVHSYGLAAAQLDRIRAKGLNLTVCVDKVAASGGYMMACVADRIVASPFAILGSIGVVAQLPNVHRLLKKNNVDFEVLTAGEHKRTLTVFGENTDKGRQKFLADLEDIHQLFKDYVGERRPQLDMAAVANGDIWFGRRALDVKLIDAIQTSDEYLLEAVERADVVSVTYQRKRTLPEKLGLAASAAVEHTVWRLISVFRNQNLH
>NZ_CP011494.1|WP_048385771.1|2206025_2207045_-|YhdH/YhfP-family-quinone-oxidoreductase
MSESQSKPQQNGQAYQAWQVSEQDGGYRGCETTLSTADLPAGDVLIRVSHSSLNYKDALSASGNKGVTRQFPHTPGIDAAGEVIESATGKPAVGSQVLVTGYDLGMNTAGGFGEYIRVPAAWCIAMPEGWMAKTAMIYGTAGLTAGLSVHKLLTMGATPEQGKVAVSGASGAVGSVAVEILSVLGFDVVAISGKAEQVDTLRTLGAAEILGRDALEAQKKPMLKPTFANAVDTVGGAPLAELLKQVQPGGSVSCCGLVAGIELPVTVLPFILRGVNLLGIDSVEIPLADKHVIWDKLAGPWGCPETEKSAKVIGRSDLASALEAFLAGKSSGKIVLEHG
>NZ_CP011494.1|WP_048385769.1|2205575_2205818_+|DUF2970-domain-containing-protein
MDTKSKDEGAQPGSKALPRPSLLKVMQSISAGALGVQSSKRHQEDFANPSPWAYIVGGILFTILLIGGLILLVNVVLATA
>NZ_CP011494.1|WP_048385767.1|2201847_2205546_+|methionine-synthase
MTDRTTRLKQLHQALEERIVILDGGMGTMIQQLKLDEAAFRGERFANYASDLQGNNDLLNLTQPALMRNIHADYMDAGADIIETNTFNSSRLSQADYGLEDIAKELNVAAARMAREIADEFTAKNPAKPRFVAGAVGPTSRTASLSPDVNNPGYRNVNFQALVDNYYEAVEGLVEGGCDLILIETIFDTLNAKAAIYATQQYFEDSGIELPIMISGTITDASGRTLSGQTTEAFWNSIAHAKPISVGLNCALGADALRPYIEELSAKADTYISAHPNAGLPNEFGEYDQTPEEMADIIEGFARDGFLNIIGGCCGSRPDHIEAIANAVAKYPPRKIAQPKPALRLSGLEPFTGDEHTLFINVGERTNVTGSKRFLRLIKEERYEEALSVARDQVENGAQIIDINMDEGLLDSEEVMVTFLNLVASEPDICRVPIMIDSSKWDVIEAGLRCIQGKAVVNSISLKEGEEEFFKRARDCMRYGAAVVVMAFDEKGQADTFKRKTEICKRSYDALMSIGFKPGDIIFDPNIFAIATGIEEHNNYAVDFINACRWIRTNLPHASISGGVSNVSFSFRGNDVVRETIHSVFLYHAIKAGLNMGIVNPGQLVIYDDIEAELKEAVEDVVLNRREDSTDRLLELAERFKGQGVKTPEEDLAWRDLPVKKRLEHALVKGITSHIIEDTEACRQEVDRPIHVIEGPLMDGMNVVGDLFGDGKMFLPQVVKSARVMKQAVAHLIPFIEAEKSGGQQAKGKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDMGVMVPCDKILAAAKEHNVDIIGLSGLITPSLDEMVHVAREMQRLDFHLPLMIGGATTSKAHTAVKIEPHYKNDIALYVSDASRCVNVASKLLSKTAKPDLVKAAREEYDEIRERRKNRSERTKLVSLKEARDRAPVIDFDNYVPPKPAFLGARLFEEYDLNELVPYIDWTPFFISWDIAGKYPQIFDDPKRGEVAKTLFDEAQVILRKMIDEKRVAACGIAGFWPANRRGDDVVVYTDESRTEELAVLHHLRQQDEKAPGKPMMALSDFVASKGYEHPDYVGGFAVTTGIGAEEMSNEYRDANDDYNAIMVKALADRLAEAFAERLHERVRTEFWGYASDENMDTAALIKERYQGIRPAPGYPACPDHIEKATLFTLLDATAKTGITLTEHFAMFPAAAVSGWYFSHPQSKYFAVGRIGVDQVEDYADRTGQTKAEAERWLQPSLAYDPAE
>NZ_CP011494.1|WP_048388938.1|2213794_2215534_+|LysM-peptidoglycan-binding-domain-containing-protein
MLPNRLLTCLLSAALIAGCASERSLSSADDPLDSTHVAVARGDGNFKEAVIKDQVHASQDDPLDDAIAPELKAQARTARSKLNTANIEQPATLADNAFENGTKTENTDLWQRLRDGFALDHEVDQPRLEQQLAWFASHPRYIERVMERGGRYFHYIVSETERRGLPTELALLPIVESAFDPFAYSHGRAAGLWQFVPATGKYFGLTQSWWHDDRRDVIAATDAALTYLERLSKRFDGDFTLALAAYNSGGGTVSSAIRRNQNADKPTDFWSLKLPRETRHYVPKLLALAKIFADPQAYGIDLPALANEPYFAVVETGSQLDLAKAAELAATDIDEMYLLNPSFNRWATNPDGPHRLLVPVASAERFRKALKTYPVNQRVSWQNYRVRSGDSLSTIAQRFETTAPVIRKLNKLNGDTIRIGQRLMIPSATGDSETYALSAAQRLEQKQSRPRDGDKVSYHVRSGDTFWDIAREHRVKVRELAAWNSMAPGDPLIPGKKLVIWSQNAETTVASSGSSASARIKALVRKIGYSVRKGDSLAAIAGRFSVNISDIAGWNDLNTEHYLQPGQSLVLYVDIRNSP
>NZ_CP011494.1|WP_048385786.1|2215574_2217443_+|ABC-transporter-substrate-binding-protein
MIKRRSNTSLARLFNHLLCVASIGLVMLATPLMAQNSEAPPAANSAPFNTPQHGIAMHGDTKYPPGFPHFDYVNPNAPKGDTLRLAVVANGFDTFNPFHLRGVAAAGISGYLYDTLMESSADEPFSAYGLIAESIETPADRSYVVFNLRSEARFQDGEQITAEDVAFSFNTLVTEGHPFFRNYYADVSNVTVESPQRIRFDFDTTKNRELPMILGQLPILPAHYWADREFGDSGLTPPLGSGPYRIAEFDAGRSVTYERVEDYWAKDLGVRKGRYNFNQIRYDYYNDDTVALEAFKAGNFDFRLESSAKNWATSYTGQRFESGEIITEAIGHQRPAGMQGFVFNTRKAIFSDPRVRKALTYAFDFEWANQNLFYDQYIRSDSYFANSDLASSGLPEGRELEILERYRDSLPPRVFNQAYQPPVTDGQQGVRANLKIALEELRAAGYSIKNGKMVHSETGETLAFEVLLFQKTFERVVLPFKNNLARLGVDVTVRLVDSNQYVQRVRSFDYDMTTQVFGQSDSPGNEQRDYWHSNSLDVNGSRNYAGVNNPVVDALVEQVIQAPDREELVYRTRALDRVLLNNYYVVPHWYLASDRVAYWSYLKHPGHAAKNGVDINNWWVER
>NZ_CP011494.1|WP_048385788.1|2217443_2218526_+|microcin-C-ABC-transporter-permease-YejB
MGVYILRRLALIIPTLIGIMLLNFVIVQAAPGGPIEQMIAQMQGHGGNTLARAGGGDSSGEVVTSNDSRGSRGIPDELLKEIEVMYGFDKPAHERFFKMFKDYATLDFGDSFFRDKSVLELIVDKMPVSISLGLWSTLIIYLISIPLGIRKAVSDGSRFDVWSSSAIVIGYAIPGFLFAILLIVLFAGGSYYDWFPLRGLTSSNFDEMTWYQQVGDYFWHLALPVTANVIGGFATLTLLTKNSFMDEIGKHYVVTARAKGLEEKQVLYGHVFRNAMLIVIASLPGVLVSLFFTGALLIEVIFSLDGLGLLGFEAALNRDYPVIFGTLFIFTLMGLLLKLISDITYVLVDPRIDFESREGA
>NZ_CP011494.1|WP_048385789.1|2218529_2219573_+|ABC-transporter-permease
MATLTASFSKLTPIQKRRLANFRANRRGFWSLWVFLLLFGLALIAEVIANDSPLLVSYQGQLYAPVVQDVPEETFGGFLPTTADYRDPFIADEINAHGWMLWPPIRFSYNTINYNLDVPSPAPPSAENWLGTDDQGRDVAARVIYGFRISVLFGLILTLASCVVGVTVGALQGFYGGKVDLFGQRFIEIWSGLPVLYLLIILSGIVQPNFWWLLGIMLLFSWMGLVDVVRAEFLRARNFEYVKAARALGLDNRKIMFRHILPNAMVATLTFLPFILTGAITGLTSLDFLGFGLPSGSPSLGELIAQGKANLHAPWLGISAFVSLSVMLTLLVFVGEAVRDAFDPRKN
>NZ_CP011494.1|WP_048385791.1|2219574_2221194_+|ABC-transporter-ATP-binding-protein
MAGQKTQPLLSINDLAISFNGQPPLVRGLDIQVHAGETLALVGESGSGKSISALSVLRLLDARHVSYPSGEILFHGENLLKAPENRLRQVRGRQISMIFQEPMTSLNPLHTVEKQISETLALHKGLRGDQARARCIELLQLVGIDDPKSRLASYPHQLSGGQKQRVMIAMALANEPELLIADEPTTALDVTVQKQVLELLQQLQKKLGMAILLITHNLTIVRRYADRVVVMEQGQLVEQAKVKTLFTTPQHPYTKRLLDAEPPESPPARPDIENATLLLRVRELNVRFTTAKTLLGRVKSSFHAVQDVNFELERGQTLGIVGESGSGKTTIGHALLKLTAASGHIDLDGQPLANLNQKQFRPFRKRIQIVFQDPFGSLSPRMSIAEIVQEGLEIHTPDTPEAQDALVVQALTDVGLKPQDRHRYPHEFSGGQRQRVAIARALVLQPDLIILDEPTSALDRTVQKQVIELLQSLQRKYALSYIFISHDLAVVRALSHKLLVLQHGRIVEYGKAAEIFAAPEQPYTRELLSAAFFYQKTLD
>NZ_CP011494.1|WP_048385793.1|2221297_2222092_+|enoyl-ACP-reductase
MGILSGKRALIVGVASKLSIAYGIAEAFAREGAELAFTYQNEKLQPRVEKFAAQWGSTLTFPCDVASDDEINNVFTELGKHWDNVDIIVHAVGFAPGHELDGNYVDVTTREGFRIAHDISSYSFVALAKGARGMMHEGSSLLTLSYLGAEKVLQNYNVMGLAKASLEANVRYMAASLGRDGIRVNGISAGPIRTLAASGIKSFRKMLAENARRAPLRRNVTTNEVGNAAAFLGSDLSSGITGEIMYVDAGFNITGMGELEDAEI
>NZ_CP011494.1|WP_084708319.1|2222230_2222659_-|PilZ-domain-containing-protein
MTVADKDYIFGLANDARSPDNRFDYRLCAQAKAVIHLETAESVQYTDRKQVLACPVRDLSASGLRLWSAYSLPVGAFVPALIHLVDGQPDYHLTLEIVWCEPELVEASEPPTGYLAGCRVLESGGTDAVEWLEAVAMAMLKA
>NZ_CP011494.1|WP_048385796.1|2222645_2224481_-|DUF1631-family-protein
MPLKPSQLPASQAKATDYGATEQVLSNIRVPDLPYPVSGDCDTQADAWRALMAQFWQQQSDGRVNDLISAEGGVFSVRQVNAAYLADRLMDVFLTSSGFHLELVRRLARTRFYLAWQLNETGSAAFSDSLLAAFDGLQYWRGWSPGAGRSARVLADQLGDMTVAITEAFVQQEIVNADDFFRRWSELIRRQKNQTNHLHDRLLATEQGAARQRYADQTARALVSRALHGRRLPATFNEFIEKYWLPLLIRALRDGGMDGSDFRHGRKLLEWLVWFGDPALSDGQRDRLYQVGEQMTDRLLDVWQCIMDSALSANTLYRIQLAMMERMRESSNGELQSTDACIGAIAADLRWLSLKTPSATEIDATSGRWYEIHQDSAEQRRYFFAFLPDTAEILWTNGAGVKLGFQDFSEFCAQRERGQIKPLQDSVAFSCVLMQILAVLAAAAAHQKRERTTAAALAHARAEALRRERQQREEEHQQQLEARKVEVERLQLQAEDQRLDKAKAQEEMAWQERLRTAEKQVFGLKPGHWIMILDPLITEAGVERMKLAMRLSTRRKMVFVDRFGLNQRELQEQELVEYIVAEQIRVLGSGVNFDDTLSDVVGRIRGGHYSG
>NZ_CP011494.1|WP_048385798.1|2224594_2225671_+|3-deoxy-7-phosphoheptulonate-synthase
MSGTKLENLNVASQETLMPPETLKQDLPLTDKAAATVAKGRQDIYNIMDGTDHRLFLVLGPCSIHDVDAALDYARRLKKLADEVSDTLLIVMRVYFEKPRTTVGWKGLINDPRLDDTFDIQQGLHIGRKLLIDISELGLPTATEALDPISPQYLQDAISWSAIGARTTESQTHREMSSGLSMAIGFKNGTDGNLDVAVNAMKSVSHPHSFLGINQQGQVAIIRTKGNNYGHVVLRGGGGKPNYDSVNVALCEQALEKSGLRKAIMVDCSHANSSKDPAIQSLVMNDVSNQILDGNTSIQSLMIESNINWGNQSIPQNLADLKYGVSVTDACIDWDTTEKAVHEMRNKLKDVLPKRARA
>NZ_CP011494.1|WP_048385800.1|2225745_2227020_-|serine--tRNA-ligase
MLDPKRVRSQTEEIARRLAIKNFTFDTAAFEQLEERRRGLQVRTETLQGEQNKKSKSIGKAKASGEDIQPLLDEVDDLKARKSQAEDQLRELQEELNHFLAAIPNVPDEGVPAGKDDDDNVELRTWGTPRVFSFEPQDHVALGEALNGMDFETATNLAHSRFVVMRGQVARLHRALAQFMLDLHTEEHGYTEAYVPYLVNAEALFGTGQLPKFEADLFRVESEKPLYLIPTAEVPVTNLIADSILDAAELPLKMVCHTPCFRSEAGSYGRDTRGMIRQHQFDKVELVQVVRPEDSDAALDALTGHAEKVLQLLELPYRTMALCGGDMGFSAARTYDLEVWLPGQQKFREISSCSNTRDFQARRMQARWRNPETGKPEPVHTLNGSGLAVGRALIAVMENYQQEDGSITVPDVLKPYMRSLDKIG

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP011494_3	3.1\|2213589\|27\|NZ_CP011494\|CRISPRCasFinder	2213589-2213615	27	NZ_CP017077	Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence	697349-697375	5	0.815

1. spacer 3.1|2213589|27|NZ_CP011494|CRISPRCasFinder matches to NZ_CP017077 (Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence) position: , mismatch: 5, identity: 0.815

ggttcgtggtttttggctcggcaacac	CRISPR spacer
gcttcgtggtttttgcctcggcatccg	Protospacer
* ************* ******* *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3777416 : 3785206

Bacillus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_084708378.1\|3777416_3778292_-	DNA ligase	F2Y1N0	Organic_Lake_phycodnavirus	2.6e-34	37.4
WP_157035567.1\|3778580_3778721_+	hypothetical protein	NA	NA	NA	NA
WP_048388177.1\|3778950_3779211_+	acyl-CoA-binding protein	A0A1V0S9E7	Catovirus	4.6e-08	37.9
WP_048388180.1\|3779226_3779700_+	transcription elongation factor GreB	NA	NA	NA	NA
WP_048388182.1\|3779948_3780218_+	hypothetical protein	NA	NA	NA	NA
WP_048388184.1\|3780226_3781690_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	4.9e-22	27.2
WP_007348255.1\|3781676_3782357_-	response regulator transcription factor	W8CYM9	Bacillus_phage	9.0e-27	30.8
WP_014872932.1\|3782546_3783407_-	RNA polymerase sigma factor RpoH	A0A248SJA5	Salicola_phage	7.3e-42	36.4
WP_084708379.1\|3783540_3784527_-	cell division protein FtsX	NA	NA	NA	NA
WP_048388189.1\|3784519_3785206_-	cell division ATP-binding protein FtsE	W6JKT0	Anomala_cuprea_entomopoxvirus	1.1e-13	26.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011494

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection