CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP012044	Mycobacteroides abscessus UC22 chromosome, complete genome	0 crisprs	cas3,csa3,RT,DEDDh,cas4,WYL	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

511523 : 575456

Mycobacterium_phage(30.0%)

capsid,transposase,terminase,integrase,portal

attL 501130:501146|attR 574274:574290

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
501130:501146	attL	NA	NA	NA	NA
WP_085984359.1\|511523_512785_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	4.6e-69	53.1
WP_049231790.1\|513102_513504_-	hypothetical protein	NA	NA	NA	NA
WP_049231791.1\|513500_515732_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_079454457.1\|515718_516912_-\|integrase	tyrosine-type recombinase/integrase	F8J1D8	Lactobacillus_phage	3.4e-05	27.1
WP_049231793.1\|516943_518194_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_079454399.1\|518255_518966_-	hypothetical protein	NA	NA	NA	NA
WP_049231794.1\|519304_520081_+	membrane protein	NA	NA	NA	NA
WP_005083513.1\|520077_520662_+	hypothetical protein	NA	NA	NA	NA
WP_005083512.1\|520716_520908_+	DUF4244 domain-containing protein	NA	NA	NA	NA
WP_005065483.1\|520961_521234_+	hypothetical protein	NA	NA	NA	NA
WP_074376839.1\|521187_521577_+	flp pilus-assembly TadE/G-like family protein	NA	NA	NA	NA
WP_005083508.1\|521589_522222_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_005083507.1\|522427_522889_+	membrane protein	NA	NA	NA	NA
WP_049231795.1\|522885_525816_+	RND family transporter	NA	NA	NA	NA
WP_025239156.1\|525935_526376_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005083502.1\|526443_527538_+	NmrA family NAD(P)-binding protein	NA	NA	NA	NA
WP_005083500.1\|527550_527919_-	hypothetical protein	NA	NA	NA	NA
WP_005086905.1\|527915_528836_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_005083497.1\|528877_529513_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_005083496.1\|529662_530622_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_049231796.1\|530713_531817_+	NADH:flavin oxidoreductase/NADH oxidase	NA	NA	NA	NA
WP_005098672.1\|531813_534147_-	DEAD/DEAH box helicase	A0A1B1IUF6	uncultured_Mediterranean_phage	1.4e-07	24.3
WP_005064941.1\|534464_534668_+	cold-shock protein	Q9AZD3	Lactococcus_phage	5.8e-14	54.7
WP_049234526.1\|534824_535412_+	hypothetical protein	NA	NA	NA	NA
WP_049231797.1\|535598_538391_+	type I DNA topoisomerase	M1PXL0	Moumouvirus	1.8e-97	31.2
WP_005064937.1\|538387_539878_-	adenylate/guanylate cyclase domain-containing protein	A0A1B1IWY2	uncultured_Mediterranean_phage	5.7e-18	32.3
WP_005083491.1\|540040_541246_+	DNA polymerase III subunit delta'	S5WKH4	Pseudomonas_phage	6.3e-07	29.7
WP_049231798.1\|541813_542047_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_032668405.1\|542232_542529_+	hypothetical protein	NA	NA	NA	NA
WP_049234528.1\|542585_542834_+	hypothetical protein	A0A0A7RXV8	Mycobacterium_phage	5.8e-16	56.1
WP_100459850.1\|542830_543139_+	hypothetical protein	NA	NA	NA	NA
WP_049231800.1\|543138_543357_+	hypothetical protein	NA	NA	NA	NA
WP_049231802.1\|543572_543956_+	hypothetical protein	NA	NA	NA	NA
WP_049231803.1\|543952_545101_+	hypothetical protein	NA	NA	NA	NA
WP_049231804.1\|545100_545430_+	hypothetical protein	NA	NA	NA	NA
WP_049231805.1\|545426_546128_+	DUF2637 domain-containing protein	A0A222ZPB3	Mycobacterium_phage	4.1e-35	42.8
WP_049231806.1\|546124_546547_+	hypothetical protein	A0A1J0ME36	Mycobacterium_phage	1.5e-11	35.4
WP_005121943.1\|546607_546826_+	hypothetical protein	NA	NA	NA	NA
WP_049231807.1\|546826_547681_+	hypothetical protein	A0A076GDW6	Mycobacterium_phage	5.4e-05	46.9
WP_157884446.1\|547677_547914_+	hypothetical protein	NA	NA	NA	NA
WP_049231808.1\|547913_548789_+	hypothetical protein	NA	NA	NA	NA
WP_049231809.1\|548785_549319_+	hypothetical protein	A0A2P1N2R2	Gordonia_phage	1.6e-15	69.4
WP_049231811.1\|549318_549696_+	hypothetical protein	NA	NA	NA	NA
WP_049231812.1\|549692_549965_+	hypothetical protein	NA	NA	NA	NA
WP_049231814.1\|550128_550539_+	hypothetical protein	NA	NA	NA	NA
WP_016887063.1\|550707_551022_+	HNH endonuclease	A0A222ZN30	Mycobacterium_phage	1.0e-25	55.4
WP_005121962.1\|551026_551296_+	hypothetical protein	A0A142K954	Gordonia_phage	6.7e-10	35.7
WP_049231818.1\|551520_551949_+	hypothetical protein	NA	NA	NA	NA
WP_025982005.1\|551999_552344_+	hypothetical protein	NA	NA	NA	NA
WP_049231819.1\|552315_553770_+\|terminase	terminase	A0A142KAW2	Gordonia_phage	2.0e-172	65.5
WP_049231821.1\|553766_555239_+\|portal	phage portal protein	A0A2H4J2P6	uncultured_Caudovirales_phage	5.2e-173	65.6
WP_049231822.1\|555219_556092_+	hypothetical protein	A0A088FUW7	Mycobacterium_phage	1.0e-83	59.6
WP_079454402.1\|556151_556793_+	hypothetical protein	A0A2H4IYC3	uncultured_Caudovirales_phage	3.6e-17	45.3
WP_049231823.1\|556812_557721_+\|capsid	phage capsid protein	A0A142KAW6	Gordonia_phage	6.2e-132	77.4
WP_049231826.1\|557720_558059_+	hypothetical protein	NA	NA	NA	NA
WP_016887071.1\|558030_558528_+	hypothetical protein	A0A142KAW8	Gordonia_phage	5.9e-36	53.1
WP_049231828.1\|558520_558865_+	hypothetical protein	NA	NA	NA	NA
WP_005129597.1\|558866_559145_+	hypothetical protein	NA	NA	NA	NA
WP_049231830.1\|559134_559560_+	hypothetical protein	NA	NA	NA	NA
WP_049231832.1\|559649_560510_+	hypothetical protein	A0A159B6N7	Tsukamurella_phage	7.3e-58	44.8
WP_049234532.1\|560645_561095_+	hypothetical protein	NA	NA	NA	NA
WP_016887077.1\|561181_561475_+	hypothetical protein	NA	NA	NA	NA
WP_049231834.1\|561482_564626_+	hypothetical protein	A0A159B6P7	Tsukamurella_phage	2.0e-65	61.2
WP_049231835.1\|564622_565720_+	hypothetical protein	A0A161BYL5	Tsukamurella_phage	5.3e-138	63.1
WP_049234534.1\|565719_567477_+	hypothetical protein	A0A159B6N9	Tsukamurella_phage	1.8e-260	74.2
WP_049231837.1\|567547_567772_+	hypothetical protein	NA	NA	NA	NA
WP_049231839.1\|567768_568158_+	hypothetical protein	A0A0F6WF85	Mycobacterium_phage	2.2e-06	32.8
WP_049231841.1\|568154_569207_+	hypothetical protein	A0A159B6N6	Tsukamurella_phage	1.8e-103	53.3
WP_049231843.1\|569206_569488_+	hypothetical protein	A0A159B6P6	Tsukamurella_phage	1.8e-21	59.3
WP_049231844.1\|569471_571997_+	hypothetical protein	A0A2P1A0Q0	Gordonia_phage	2.0e-47	34.0
WP_049231847.1\|572024_572336_+	hypothetical protein	NA	NA	NA	NA
WP_049231849.1\|572336_573491_+	hypothetical protein	NA	NA	NA	NA
WP_049231850.1\|573506_573899_+	hypothetical protein	A0A222ZQF4	Mycobacterium_phage	2.4e-40	68.8
WP_049231852.1\|574038_574218_+	hypothetical protein	NA	NA	NA	NA
WP_049231853.1\|574214_575456_+	peptidoglycan DD-metalloendopeptidase family protein	Q854L4	Mycobacterium_phage	8.6e-84	62.2
574274:574290	attR	NA	NA	NA	NA

DBSCAN-SWA_2

2928494 : 2937032

Streptococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005068898.1\|2928494_2929166_-	MBL fold metallo-hydrolase	A0A1X9I5D3	Streptococcus_phage	4.9e-17	31.1
WP_005057567.1\|2929279_2930203_+	peptidylprolyl isomerase	A0A1V0SCU1	Indivirus	1.1e-08	31.6
WP_019164608.1\|2930204_2931074_+	class A beta-lactamase	A0A1B0VBP7	Salmonella_phage	5.3e-56	47.0
WP_005068903.1\|2931175_2933542_-	RelA/SpoT family protein	A0A291L9W9	Bordetella_phage	1.8e-13	38.4
WP_005082386.1\|2933572_2934106_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	8.1e-15	36.4
WP_016892305.1\|2934102_2935779_-	hypothetical protein	NA	NA	NA	NA
WP_005068908.1\|2935778_2937032_-	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.5e-22	28.6

DBSCAN-SWA_3

4239865 : 4251580

Mycobacterium_phage(69.23%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005080329.1\|4239865_4240696_-	NAD(P)-dependent oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	7.4e-07	29.1
WP_005061618.1\|4240823_4241114_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005070857.1\|4241234_4241426_+	hypothetical protein	NA	NA	NA	NA
WP_049233916.1\|4241422_4242187_+	antirepressor	A0A142K8T5	Gordonia_phage	2.5e-49	48.1
WP_049233919.1\|4242290_4242677_+	hypothetical protein	NA	NA	NA	NA
WP_005123075.1\|4242673_4243003_+	hypothetical protein	NA	NA	NA	NA
WP_005123079.1\|4242999_4243380_+	DUF3850 domain-containing protein	A0A1B1SGE4	Mycobacterium_phage	9.2e-13	40.9
WP_049233921.1\|4243376_4243727_+	hypothetical protein	J7KDJ6	Mycobacterium_virus	8.4e-29	60.2
WP_049233924.1\|4243723_4244023_+	hypothetical protein	NA	NA	NA	NA
WP_049233925.1\|4244010_4244235_+	hypothetical protein	A0A2H4GST7	Mycobacterium_phage	1.7e-06	56.1
WP_049233928.1\|4244231_4245134_+	recE	A0A2D1G8R5	Mycobacterium_phage	3.9e-78	51.2
WP_049233929.1\|4245130_4246252_+	hypothetical protein	A0A2P1CGD3	Mycobacterium_phage	7.2e-98	69.1
WP_005123095.1\|4246254_4246596_+	hypothetical protein	G8I4S2	Mycobacterium_phage	1.5e-35	68.1
WP_049233932.1\|4246623_4247460_+	DUF2303 family protein	G8I4S3	Mycobacterium_phage	1.1e-103	66.5
WP_025988934.1\|4247471_4248335_+	SPFH domain-containing protein	A0A0M4RAA7	Mycobacterium_phage	1.8e-72	52.9
WP_005061654.1\|4248345_4248879_+	hypothetical protein	A0A0F6WF12	Mycobacterium_phage	2.3e-41	53.3
WP_049233938.1\|4248875_4249292_+	hypothetical protein	NA	NA	NA	NA
WP_049233940.1\|4249456_4250035_-	hypothetical protein	NA	NA	NA	NA
WP_049233942.1\|4250219_4250618_+	hypothetical protein	G8I4T1	Mycobacterium_phage	1.0e-51	80.2
WP_049233944.1\|4250668_4251580_+	hypothetical protein	A0A1B3B1T0	Gordonia_phage	4.6e-42	63.3

DBSCAN-SWA_4

4258582 : 4286261

Mycobacterium_phage(91.3%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_049233963.1\|4258582_4259533_-	HNH endonuclease	A0A125RNK0	Pseudomonas_phage	1.7e-07	46.6
WP_049233966.1\|4260004_4260406_+	hypothetical protein	G3M5G1	Mycobacterium_phage	7.6e-34	58.8
WP_016893330.1\|4260402_4260801_+	hypothetical protein	A0A088F7V7	Mycobacterium_phage	5.4e-16	52.0
WP_053086262.1\|4260907_4261171_+	hypothetical protein	A0A1D8EX45	Mycobacterium_phage	2.4e-28	70.1
WP_049233971.1\|4261167_4261620_+	AAA family ATPase	A0A0F6SJL7	Mycobacterium_phage	2.2e-53	66.7
WP_049233975.1\|4261783_4262179_+	hypothetical protein	NA	NA	NA	NA
WP_049233979.1\|4262150_4263788_+\|terminase	terminase	A0A249XTN0	Mycobacterium_phage	6.1e-239	75.8
WP_049233983.1\|4263802_4265251_+	hypothetical protein	A0A249XTF7	Mycobacterium_phage	3.8e-168	71.6
WP_049233986.1\|4265244_4266498_+	peptidase S14	A0A1B3AZ47	Gordonia_phage	5.4e-86	51.5
WP_049233989.1\|4266501_4266879_+	hypothetical protein	W8EH90	Mycobacterium_phage	3.7e-46	83.2
WP_049233993.1\|4266895_4267807_+	hypothetical protein	A0A2K9VEV5	Mycobacterium_phage	7.5e-138	80.4
WP_016341855.1\|4267806_4268256_+	hypothetical protein	NA	NA	NA	NA
WP_049233998.1\|4268260_4268623_+	hypothetical protein	A0A218M9J6	Mycobacterium_phage	9.3e-31	57.5
WP_049234002.1\|4268622_4269030_+	hypothetical protein	NA	NA	NA	NA
WP_049234006.1\|4269029_4269389_+	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_049234007.1\|4269388_4269799_+	hypothetical protein	NA	NA	NA	NA
WP_049234009.1\|4269896_4270976_+	hypothetical protein	A0A2H4PED2	Mycobacterium_phage	1.1e-63	46.5
WP_049234012.1\|4271075_4271522_+	hypothetical protein	A0A0A7RVK9	Mycobacterium_phage	1.7e-26	43.0
WP_005070934.1\|4271583_4271946_+	hypothetical protein	A0A2P1JR40	Mycobacterium_phage	1.7e-29	62.6
WP_049234016.1\|4271960_4275611_+	hypothetical protein	A0A0B5H802	Mycobacterium_phage	2.2e-204	43.1
WP_049234017.1\|4275607_4277338_+	hypothetical protein	A0A1I9SC71	Mycobacterium_phage	1.1e-198	58.8
WP_079454451.1\|4277378_4279085_+	hypothetical protein	A0A097EYM8	Mycobacterium_phage	2.0e-269	77.8
WP_005123204.1\|4279100_4279940_+	hypothetical protein	A0A142K812	Mycobacterium_phage	2.7e-81	53.9
WP_049234022.1\|4279936_4282384_+	hypothetical protein	A0A2P1JZR8	Mycobacterium_phage	8.8e-48	30.2
WP_049234025.1\|4282467_4283439_+	hypothetical protein	A0A059VL91	Mycobacterium_phage	4.6e-24	55.0
WP_005061750.1\|4283461_4283917_+	hypothetical protein	NA	NA	NA	NA
WP_049234029.1\|4283936_4284299_+	hypothetical protein	A0A1C9EGR9	Mycobacterium_phage	6.8e-50	81.5
WP_005061757.1\|4284441_4285089_+	M15 family metallopeptidase	A0A0K1LIU2	Mycobacterium_phage	4.6e-97	76.3
WP_005070962.1\|4285085_4286261_+	hypothetical protein	A0A1X9SFG9	Mycobacterium_phage	2.8e-124	70.3

DBSCAN-SWA_5

4460940 : 4470433

Burkholderia_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_049234105.1\|4460940_4462065_-	acyltransferase	A9YX16	Burkholderia_phage	2.1e-20	28.7
WP_005085927.1\|4462061_4463330_-	glycosyltransferase	A0A1L3KK54	Shahe_endorna-like_virus	3.3e-06	40.3
WP_005062157.1\|4463379_4464180_-	macrocin O-methyltransferase	A0A2R8FDY2	Brazilian_cedratvirus	4.9e-56	52.6
WP_017206146.1\|4464396_4465131_-	class I SAM-dependent methyltransferase	Q98VI8	Paramecium_bursaria_Chlorella_virus	4.0e-12	30.2
WP_005086341.1\|4465321_4466452_-	acyltransferase	A9YX16	Burkholderia_phage	4.1e-16	27.6
WP_005085923.1\|4466619_4467681_-	NAD-dependent epimerase/dehydratase family protein	A0A0E3IB24	Synechococcus_phage	4.1e-18	26.1
WP_005094865.1\|4467844_4469104_-	glycosyltransferase	A0A1L3KK54	Shahe_endorna-like_virus	1.6e-05	39.2
WP_005062166.1\|4469566_4470433_+	glucose-1-phosphate thymidylyltransferase RfbA	H9NC64	Sphingomonas_phage	2.8e-89	57.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage