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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP012046 Achromobacter xylosoxidans strain MN001 chromosome, complete genome 5 crisprs cas3,DinG,DEDDh,csa3,WYL,PD-DExK 2 1 5 0

Results visualization

1. NZ_CP012046
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012046_1 552243-552331 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012046_2 1587095-1587202 Orphan NA
2 spacers
DinG

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012046_3 1765839-1765938 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012046_4 3915110-3915220 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012046_5 5639938-5640045 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP012046_2 2.2|1587161|18|NZ_CP012046|CRISPRCasFinder 1587161-1587178 18 NZ_CP012046.1 1587191-1587208 0 1.0
NZ_CP012046_2 2.2|1587161|18|NZ_CP012046|CRISPRCasFinder 1587161-1587178 18 NZ_CP012046.1 1587197-1587214 0 1.0
NZ_CP012046_2 2.2|1587161|18|NZ_CP012046|CRISPRCasFinder 1587161-1587178 18 NZ_CP012046.1 1587203-1587220 0 1.0
NZ_CP012046_2 2.2|1587161|18|NZ_CP012046|CRISPRCasFinder 1587161-1587178 18 NZ_CP012046.1 1587209-1587226 0 1.0
NZ_CP012046_2 2.2|1587161|18|NZ_CP012046|CRISPRCasFinder 1587161-1587178 18 NZ_CP012046.1 1587215-1587232 0 1.0
NZ_CP012046_2 2.1|1587119|18|NZ_CP012046|CRISPRCasFinder 1587119-1587136 18 NZ_CP012046.1 4808709-4808726 1 0.944
NZ_CP012046_2 2.2|1587161|18|NZ_CP012046|CRISPRCasFinder 1587161-1587178 18 NZ_CP012046.1 2125919-2125936 1 0.944
NZ_CP012046_2 2.2|1587161|18|NZ_CP012046|CRISPRCasFinder 1587161-1587178 18 NZ_CP012046.1 3273277-3273294 1 0.944
NZ_CP012046_2 2.2|1587161|18|NZ_CP012046|CRISPRCasFinder 1587161-1587178 18 NZ_CP012046.1 3715299-3715316 1 0.944
NZ_CP012046_2 2.2|1587161|18|NZ_CP012046|CRISPRCasFinder 1587161-1587178 18 NZ_CP012046.1 1010337-1010354 1 0.944
NZ_CP012046_2 2.2|1587161|18|NZ_CP012046|CRISPRCasFinder 1587161-1587178 18 NZ_CP012046.1 3501449-3501466 1 0.944
NZ_CP012046_2 2.2|1587161|18|NZ_CP012046|CRISPRCasFinder 1587161-1587178 18 NZ_CP012046.1 3582672-3582689 1 0.944

1. spacer 2.2|1587161|18|NZ_CP012046|CRISPRCasFinder matches to position: 1587191-1587208, mismatch: 0, identity: 1.0

ccaggcccaggcccaggc	CRISPR spacer
ccaggcccaggcccaggc	Protospacer
******************

2. spacer 2.2|1587161|18|NZ_CP012046|CRISPRCasFinder matches to position: 1587197-1587214, mismatch: 0, identity: 1.0

ccaggcccaggcccaggc	CRISPR spacer
ccaggcccaggcccaggc	Protospacer
******************

3. spacer 2.2|1587161|18|NZ_CP012046|CRISPRCasFinder matches to position: 1587203-1587220, mismatch: 0, identity: 1.0

ccaggcccaggcccaggc	CRISPR spacer
ccaggcccaggcccaggc	Protospacer
******************

4. spacer 2.2|1587161|18|NZ_CP012046|CRISPRCasFinder matches to position: 1587209-1587226, mismatch: 0, identity: 1.0

ccaggcccaggcccaggc	CRISPR spacer
ccaggcccaggcccaggc	Protospacer
******************

5. spacer 2.2|1587161|18|NZ_CP012046|CRISPRCasFinder matches to position: 1587215-1587232, mismatch: 0, identity: 1.0

ccaggcccaggcccaggc	CRISPR spacer
ccaggcccaggcccaggc	Protospacer
******************

6. spacer 2.1|1587119|18|NZ_CP012046|CRISPRCasFinder matches to position: 4808709-4808726, mismatch: 1, identity: 0.944

cgcgacgcccgccgccgt	CRISPR spacer
cgcgacgaccgccgccgt	Protospacer
******* **********

7. spacer 2.2|1587161|18|NZ_CP012046|CRISPRCasFinder matches to position: 2125919-2125936, mismatch: 1, identity: 0.944

ccaggcccaggcccaggc	CRISPR spacer
ccgggcccaggcccaggc	Protospacer
**.***************

8. spacer 2.2|1587161|18|NZ_CP012046|CRISPRCasFinder matches to position: 3273277-3273294, mismatch: 1, identity: 0.944

ccaggcccaggcccaggc	CRISPR spacer
ccaggcccaggaccaggc	Protospacer
*********** ******

9. spacer 2.2|1587161|18|NZ_CP012046|CRISPRCasFinder matches to position: 3715299-3715316, mismatch: 1, identity: 0.944

ccaggcccaggcccaggc	CRISPR spacer
ccaggccgaggcccaggc	Protospacer
******* **********

10. spacer 2.2|1587161|18|NZ_CP012046|CRISPRCasFinder matches to position: 1010337-1010354, mismatch: 1, identity: 0.944

ccaggcccaggcccaggc	CRISPR spacer
ccaggcccaggtccaggc	Protospacer
***********.******

11. spacer 2.2|1587161|18|NZ_CP012046|CRISPRCasFinder matches to position: 3501449-3501466, mismatch: 1, identity: 0.944

ccaggcccaggcccaggc	CRISPR spacer
ccaggcccagggccaggc	Protospacer
*********** ******

12. spacer 2.2|1587161|18|NZ_CP012046|CRISPRCasFinder matches to position: 3582672-3582689, mismatch: 1, identity: 0.944

ccaggcccaggcccaggc	CRISPR spacer
ccaggcccaggcccgggc	Protospacer
**************.***

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP012046_1 1.1|552272|31|NZ_CP012046|CRISPRCasFinder 552272-552302 31 NZ_CP020716 Cnuibacter physcomitrellae strain XA(T) plasmid unnamed1, complete sequence 117907-117937 6 0.806
NZ_CP012046_1 1.1|552272|31|NZ_CP012046|CRISPRCasFinder 552272-552302 31 NZ_CP033228 Sphingobium yanoikuyae strain SJTF8 plasmid pF2, complete sequence 7003-7033 7 0.774
NZ_CP012046_1 1.1|552272|31|NZ_CP012046|CRISPRCasFinder 552272-552302 31 NZ_CP022605 Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence 929949-929979 8 0.742

1. spacer 1.1|552272|31|NZ_CP012046|CRISPRCasFinder matches to NZ_CP020716 (Cnuibacter physcomitrellae strain XA(T) plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.806

acgttcgacgccaggacgatcgaagcgctcc	CRISPR spacer
gcgttcgacgcctggacgatcgcagcgggcg	Protospacer
.*********** ********* ****  * 

2. spacer 1.1|552272|31|NZ_CP012046|CRISPRCasFinder matches to NZ_CP033228 (Sphingobium yanoikuyae strain SJTF8 plasmid pF2, complete sequence) position: , mismatch: 7, identity: 0.774

acgttcgacgccaggacgatcgaagcgctcc	CRISPR spacer
gatatcgacgcccggacgatcgaggcgcttc	Protospacer
.   ******** **********.*****.*

3. spacer 1.1|552272|31|NZ_CP012046|CRISPRCasFinder matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

acgttcgacgccaggacgatcgaagcgctcc	CRISPR spacer
agcctcgacgccaggtcgattgaagcgaccg	Protospacer
*  .*********** ****.****** .* 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1650920 : 1662398 14 Pseudomonas_phage(44.44%) integrase attL 1653594:1653621|attR 1664279:1664306
DBSCAN-SWA_2 1856586 : 1919213 56 Burkholderia_phage(33.33%) transposase,integrase,tRNA,protease attL 1882381:1882398|attR 1918719:1918736
DBSCAN-SWA_3 3056494 : 3064352 9 Moraxella_phage(33.33%) tRNA NA
DBSCAN-SWA_4 5257761 : 5326350 60 Burkholderia_virus(29.41%) integrase,tail,transposase attL 5250595:5250649|attR 5299400:5299454
DBSCAN-SWA_5 5689284 : 5696962 8 Enterobacteria_phage(66.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage