CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP012005	Acinetobacter baumannii strain ATCC 17978-mff plasmid pAB3, complete sequence	0 crisprs	csa3	0	0	1	0
NZ_CP012004	Acinetobacter baumannii strain ATCC 17978-mff chromosome, complete genome	3 crisprs	cas3,TnsE_C,DEDDh,WYL,csa3,RT	0	1	5	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

77257 : 100109

uncultured_Caudovirales_phage(40.0%)

integrase,transposase

attL 66240:66255|attR 106346:106361

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
66240:66255	attL	NA	NA	NA	NA
WP_085944194.1\|77257_78476_+\|transposase	IS3-like element ISAba18 family transposase	A0A0N7C1X7	Escherichia_phage	3.2e-75	51.2
WP_017397630.1\|78771_79887_-	TniQ family protein	NA	NA	NA	NA
WP_074031684.1\|79913_80714_-	TniB family NTP-binding protein	NA	NA	NA	NA
WP_000954590.1\|81034_82237_+\|integrase	site-specific integrase	T1S9J3	Salmonella_phage	5.0e-121	55.1
WP_001179606.1\|82384_82606_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_001162384.1\|82610_83438_+	AAA family ATPase	NA	NA	NA	NA
WP_000743064.1\|83424_84306_+	replication protein C	NA	NA	NA	NA
WP_000024442.1\|85338_85527_+	stabilization protein	NA	NA	NA	NA
WP_000836966.1\|85667_86447_+	P-type conjugative transfer protein TrbJ	NA	NA	NA	NA
WP_000718002.1\|86459_86696_+	entry exclusion lipoprotein TrbK	NA	NA	NA	NA
WP_001405816.1\|86706_88134_+	P-type conjugative transfer protein TrbL	NA	NA	NA	NA
WP_000213809.1\|88138_88387_+	hypothetical protein	NA	NA	NA	NA
WP_000211355.1\|88450_88675_+	type I toxin-antitoxin system ptaRNA1 family toxin	NA	NA	NA	NA
WP_000131871.1\|88711_88915_-	hypothetical protein	NA	NA	NA	NA
WP_001272375.1\|89029_90097_-	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_000140066.1\|90093_90600_-	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	3.0e-27	42.6
WP_001239389.1\|90596_91364_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.4e-76	63.3
WP_000447876.1\|91360_91693_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001366550.1\|91840_92578_+	recombinase family protein	NA	NA	NA	NA
WP_000743213.1\|92574_92799_+	hypothetical protein	NA	NA	NA	NA
WP_001120888.1\|93009_94503_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001445143.1\|94533_94785_+	hypothetical protein	NA	NA	NA	NA
WP_000251875.1\|94678_94981_-	phosphoglucosamine mutase	NA	NA	NA	NA
WP_001043260.1\|95067_95883_-	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
WP_085940413.1\|95975_97065_+\|transposase	IS4 family transposase ISAba1	NA	NA	NA	NA
WP_000573066.1\|97487_99398_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_000736393.1\|99398_100109_-\|transposase	heteromeric transposase endonuclease subunit TnsA	NA	NA	NA	NA
106346:106361	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP012004

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012004_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012004_1

720491-720575

Orphan

Consensus_repeat	Method
AAAAGATTGATAATCTTTTAATTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012004_1

>merge|NZ_CP012004|1|720491-720575|CRISPRCasFinder
AAAAGATTGATAATCTTTTAATTTTGGCACAAGACAAGCAGTGAAACTGCGCGTAGAGTAAAGAAGATTGATAATCTTTTAATTT

>NZ_CP012004|1|1|720491-720575|CRISPRCasFinder
AAAAGATTGATAATCTTTTAATTT	TGGCACAAGACAAGCAGTGAAACTGCGCGTAGAGTAA
AGAAGATTGATAATCTTTTAATTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012004.1\|WP_001198160.1\|722223_723009_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750
NZ_CP012004.1\|WP_000473043.1\|723135_725682_-\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|99797
NZ_CP012004.1\|WP_000077301.1\|720650_721154_+\|L,D-transpeptidase	unknown	unknown	gnl\|CDD\|341130
NZ_CP012004.1\|WP_011860157.1\|708038_708638_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012004.1\|WP_001017518.1\|719118_720027_-\|DUF1853-family-protein	unknown	unknown	gnl\|CDD\|378094
NZ_CP012004.1\|WP_001047593.1\|730059_730764_-\|nitroreductase	unknown	unknown	gnl\|CDD\|380313
NZ_CP012004.1\|WP_001016573.1\|717614_718751_-\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|237265
NZ_CP012004.1\|WP_160945280.1\|717150_717579_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012004.1\|WP_000125649.1\|725839_726415_-\|SdpI-family-protein	unknown	unknown	gnl\|CDD\|379303
NZ_CP012004.1\|WP_000505931.1\|710372_712451_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP012004.1\|WP_000101096.1\|709366_709729_+\|response-regulator	unknown	unknown	gnl\|CDD\|381093
NZ_CP012004.1\|WP_001984830.1\|726515_728690_-\|TIGR01666-family-membrane-protein	unknown	unknown	gnl\|CDD\|130727
NZ_CP012004.1\|WP_002010643.1\|731274_731478_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012004.1\|WP_000389061.1\|708959_709343_+\|response-regulator	unknown	unknown	gnl\|CDD\|381093
NZ_CP012004.1\|WP_000003696.1\|728817_730032_+\|multidrug-effflux-MFS-transporter	unknown	unknown	gnl\|CDD\|340878
NZ_CP012004.1\|WP_000658897.1\|712597_717118_+\|Hpt-domain-containing-protein	unknown	unknown	gnl\|CDD\|223716
NZ_CP012004.1\|WP_001984826.1\|718876_719020_-\|entericidin-A/B-family-lipoprotein	unknown	unknown	gnl\|CDD\|227797
NZ_CP012004.1\|WP_000729757.1\|709789_710326_+\|purine-binding-chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|223905
NZ_CP012004.1\|WP_001005337.1\|731900_733376_+\|alanine:cation-symporter-family-protein	unknown	unknown	gnl\|CDD\|376500
NZ_CP012004.1\|WP_000490937.1\|731660_731801_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP012004.1\|WP_000473043.1\|723135_725682_-\|PepSY-domain-containing-protein	gnl\|CDD\|99797	cd06200, SiR_like1, Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues, and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule, which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	8.80869e-133
NZ_CP012004.1\|WP_000077301.1\|720650_721154_+\|L,D-transpeptidase	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	8.56335e-26
NZ_CP012004.1\|WP_001017518.1\|719118_720027_-\|DUF1853-family-protein	gnl\|CDD\|378094	pfam08907, DUF1853, Domain of unknown function (DUF1853). This family of proteins are functionally uncharacterized.	8.94439e-42
NZ_CP012004.1\|WP_001047593.1\|730059_730764_-\|nitroreductase	gnl\|CDD\|380313	cd02136, PnbA_NfnB-like, nitroreductase similar to Mycobacterium smegmatis NfnB. Members of this family utilize FMN as a cofactor and catalyze reduction of a variety of nitroaromatic compounds, including nitrofurans, nitrobenzens, nitrophenol, nitrobenzoate and quinones by using either NADH or NADPH as a source of reducing equivalents in an obligatory two-election transfer mechanism. The enzyme is typically a homodimer. Mycobacterium smegmatis nitroreductase NfnB plays a role in resistance to benzothiazinone.	1.03168e-34
NZ_CP012004.1\|WP_001198160.1\|722223_723009_-\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	8.28679e-39
NZ_CP012004.1\|WP_001016573.1\|717614_718751_-\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|237265	PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed.	0
NZ_CP012004.1\|WP_000125649.1\|725839_726415_-\|SdpI-family-protein	gnl\|CDD\|379303	pfam13630, SdpI, SdpI/YfhL protein family. This family of proteins includes the SdpI and YfhL proteins from B. subtilis. The SdpI protein is a multipass integral membrane protein that protects toxin-producing cells from being killed. Killing is mediated by the exported toxic protein SdpC an extracellular protein that induces the synthesis of an immunity protein.	0.00838382
NZ_CP012004.1\|WP_000505931.1\|710372_712451_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	5.99961e-71
NZ_CP012004.1\|WP_000101096.1\|709366_709729_+\|response-regulator	gnl\|CDD\|381093	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains. PleD contains a REC domain (D1) with the phosphorylatable aspartate, a REC-like adaptor domain (D2), and the enzymatic diguanylate cyclase (DGC) domain, also called the GGDEF domain according to a conserved sequence motif, as its output domain. The GGDEF-containing PleD response regulators are global regulators of cell metabolism in some important human pathogens. This model describes D1 of PleD and similar domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.79368e-36
NZ_CP012004.1\|WP_001984830.1\|726515_728690_-\|TIGR01666-family-membrane-protein	gnl\|CDD\|130727	TIGR01666, Uncharacterized_protein_HI_1680, TIGR01666 family membrane protein. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are >700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS. [Cell envelope, Other].	0
NZ_CP012004.1\|WP_000389061.1\|708959_709343_+\|response-regulator	gnl\|CDD\|381093	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains. PleD contains a REC domain (D1) with the phosphorylatable aspartate, a REC-like adaptor domain (D2), and the enzymatic diguanylate cyclase (DGC) domain, also called the GGDEF domain according to a conserved sequence motif, as its output domain. The GGDEF-containing PleD response regulators are global regulators of cell metabolism in some important human pathogens. This model describes D1 of PleD and similar domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.27194e-36
NZ_CP012004.1\|WP_000003696.1\|728817_730032_+\|multidrug-effflux-MFS-transporter	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.59576e-94
NZ_CP012004.1\|WP_000658897.1\|712597_717118_+\|Hpt-domain-containing-protein	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	3.07087e-117
NZ_CP012004.1\|WP_001984826.1\|718876_719020_-\|entericidin-A/B-family-lipoprotein	gnl\|CDD\|227797	COG5510, COG5510, Predicted small secreted protein [Function unknown].	4.44613e-07
NZ_CP012004.1\|WP_000729757.1\|709789_710326_+\|purine-binding-chemotaxis-protein-CheW	gnl\|CDD\|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	2.3712e-30
NZ_CP012004.1\|WP_001005337.1\|731900_733376_+\|alanine:cation-symporter-family-protein	gnl\|CDD\|376500	pfam01235, Na_Ala_symp, Sodium:alanine symporter family.	0

>NZ_CP012004.1|WP_001017518.1|719118_720027_-|DUF1853-family-protein
MNIASIKTSYFEPWLQFSHPMVRQLAFTIASPNLLSQLPCRLTIRHNFQLHTDQNWEQHFQNYLPRLKQLDAAPEPLLQFMSRLKSTRLGLRFENLLWFWLQEDQYHPYQLLGHSIQKIDGAKTLGELDFLVLNQNTQEIEHWEVALKYYLGEGQLNLEQWIGLNRQDTLSKKLYHFTDKQFQFSEALGFKVQQRFAVLKGQLYLPLNLPQEQPIPEWVNLKRRLGTWGTEIPKSDFYRLERHEWLCPHQKASSNTAYWWTDGLYCQNINETRFYMFRHPALLSLKPSLIKNNGVLQETTSL
>NZ_CP012004.1|WP_001984826.1|718876_719020_-|entericidin-A/B-family-lipoprotein
MMKKVLVASVMVAFVLTGCNTFKGFGQDVSKAGDAVTNTAQKTENKM
>NZ_CP012004.1|WP_001016573.1|717614_718751_-|succinyl-diaminopimelate-desuccinylase
MNHSDTLSLSLELLQQPSVTPIDHTCQTIMADRLAKVGFHIEPMRFGDVDNLWARRGTEGPVFCFAGHTDVVPTGRLDAWNSDPFAPEIRDGKLYGRGSADMKTALAAMVVASERFVAKHPNHKGSIAFLITSDEEGPAVNGTVKVIETLEKRNEKITWCLVGEPSSTHKLGDIVKNGRRGSLNAVLKVQGKQGHVAYPHLARNPIHEASPALAELCQTVWDNGNEYFPATSFQISNIHAGTGATNVIPGALEVTFNFRYSTEVTAEQLKQRVHEILDKHGLQYEIVWNLSGLPFLTPVGELVNAAQTAILNVTGTETELSTSGGTSDGRFIAPTGAQVLELGVLNATIHQINEHVDVHDLDPLTDIYEQILENLLAQ
>NZ_CP012004.1|WP_160945280.1|717150_717579_+|hypothetical-protein
MDQQELQHLITVSTGFIDAYIIECNDQVPMLLPQNIVLSAMDVKNGIKHIEWHDVKLPVYSVHNTIDQHAVALVIEGEDISQRFALICKTMPVSTRLRISEIVDEMDEHEAEQHPAVFKYVRMQDQRYYIPNLEYIEKLLGL
>NZ_CP012004.1|WP_000658897.1|712597_717118_+|Hpt-domain-containing-protein
MKEILKTLTEAMTLPEDSYSEQDAEFLEIFIEEIEEIFVDLQPLINKWMQSENIATLTEIRRHFHTLKGSGRMIGAKSSAELAWTVEDTLNRVINQSLQLTPTIQSYVQLVFKFYFLKLVDNFKQKRAHTLDFRPLILLGQQLQQQQSLEPALEELLQLSNTLMAETVTGLELDYIEQDSLAEPIIQATHTEIEINLDETLTLFMEEAEEHLATIHQFLDQELHQYDSYNALIRALHTLRGSSAMAQVETIFEASTKVEHLFKILLQEELSSHSEEILLLQEYREFVRDSLELLSRYSSSEQLEARLQQFNQFWDSYVEQHGDRTDPLMPSHGLVSQLLQLDVSELLDAELDFEKGIRNEFPDYLERLSEQADLLLQHTHSQAMLGLHEYTSQLKESYEVLLDKPALLQSDYIFEIYQKAHQQLIQLFDALAAGQRVGVVKQHQSILEELKLYTQYTPDISNDLPQQDSTSFEPISNIEQEPEVVATVENFSDSVDWAVLGQSVQQDRQYISSTQVNRNFDADLLDIFLEEAEELLEGIDTDLNIWVGEQENFAALNNLMRYLHTLKGGANMVQATYLGLIAHELESIYERLIQKQLVATSDLIDFIRLVQDDLADRLQVMREQQLDYAAPYTINALKRAGQNSNFQPLPVVEAFDTESEIFSEQEVISEIIIDEIPVELEPALAELETHHDQVFDTAVTELATPVEMITTVTSQESEIAADEQDIEAVVEQTFLEEATELLEMAESLLKQWFEQRTNRSILLQLQRAVHSLKGGARMVGLEAVQAIAYQLENAFEQFALHHFNSNIYDHLLESAIAWLKDAIFNHNYQHFDGLQQSLENIQFFETTIQIPTKLTRADLFSSEPVMTFIQGDGTEPPPMMGAWEQTERLDQNNEMIRVSADLIEKMIDLSGENSINRSRIEMDLSQFSHTLVEMELAIQRLADQLRRMEGELETQIIAKHGIEHSRYTDFDPLEMDQYSSLNQLSKSLAESASDLVDFKNTLSDKIRDTESLLLQQSRIQAEIQEGLMRTRLVPFSRLLPRLQRIVRQTSTALNRPAELFVNNTEGELDRNILERLVTPLEHMLRNAIDHGLEDRMQRQQANKPETGRIELNIQRQGTDVVVVFSDDGQGIDVEKVRQKALLAGLIKPEQDLEQQDILQLIFHPGLSTAEQVTQISGRGVGLDVVQSDIKSLGGHVSVESVYGQGTTFTIRVPTTVAVSDALMVKVADQQFAIPLAQIDRIIRVSPASLEQYFESPQELFEYENKRYPLRYLSEFVGNQPIPRLNGVMYSLPVLMIKANNGQTVALLVDQLIGSRAQIVVKPIGQQFSSIGAIAGATILGDGQVCLILDGQNIARQIQSTRRHKQLSEAVYRQRESDERRLIMIVDDSVTVRKVTSRLLERQGYDVVTAKDGVDAIEQLENIKPDLMLLDIEMPRMDGFEVLNLVRHHDMHQYMPIIMITSRTGEKHRERAFSLGVSQYMGKPFQEEELLENIDALLVASESEVKS
>NZ_CP012004.1|WP_000505931.1|710372_712451_+|methyl-accepting-chemotaxis-protein
MGFKLKKKSGNRGATGKSSVNFIAKIQSKIEQFASLFGESEKSKPILYAALLCLVCALISLAYLFYNVPRHNQLIRSLGELRLLSQTISKQATEATESGSQEAITKLQQSKKDFDENLLEIENIHGKSTDEYQKVEKIWGEVSKNIDLISSHQRVLNQLYDTNISISETVPEIQAEYNLMVDQMARQGLPSSQVIIAKNQVFIAERILRSINSVLSGTDGNVSTSDFSVDIETFGTYLNAELNGNAELGVDRIADPALRESLESIKSEYDKVLKSAAATVLKNGSQIVNVRQASSQIFSKSDVMLESLGHLSDVARKNWLTLFLGAVLILSLGGLIFSVFKLITLRSVMDKQRVARLQEEYDRNQNAILRLLDEIADLADGDLRSYATVSEDFTGAIADSINFAIDQLRDLVSRIHETSQEVARYTQDTQSITNQLAEASEHQAQEIAGASTAMNEMAQSIDQVSANASESAEVAQRSVQIASNGAQVVNRSIEGMDTIREQIQETSKRIKRLGESSQEIGNIVSLINDIADQTNILALNAAIQASMAGEAGRGFAVVADEVQRLAERSASATKQIETLVKTIQTDTNEAVISMEQTTTEVVRGANLAKDAGIALDEIQKVSGDLAKLIASISDAAKLQSASASHIATTMTVVQEITSQTTTATFDTARSVSELANMAESLRESVTDFKLPD
>NZ_CP012004.1|WP_000729757.1|709789_710326_+|purine-binding-chemotaxis-protein-CheW
MAANGFIELLRLSKRGNKNYASVQNEAQRWSGIAFEMRGQYFVAPLGEVSEVIYPPKYTPVPNTQSWVKGLANIRGRLLSVSDLAHFISGQRSSFSSTQKVLCISHHDQYVGLVVDQVLGIQHFNKKSFFSESLDLEENLKEYCQGYFHQHNQHWHVFLFSRLLQNPHYMNASTKFIN
>NZ_CP012004.1|WP_000101096.1|709366_709729_+|response-regulator
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVIVSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN
>NZ_CP012004.1|WP_000389061.1|708959_709343_+|response-regulator
MEDAFQNLKVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCALIKNSQNYQNIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHVSS
>NZ_CP012004.1|WP_011860157.1|708038_708638_-|hypothetical-protein
MSVSIGIASCGALFFSSPTLAANAAPKAVWYRYYDQHGIANISTSVTPAHIRYGYEALDQNMQVIKRNHPYNSEADLNQSSQRALSARYREEDNKLKRAYSNSKTATIKRDQALLAIKKQINYQQDQLSQLQQDKILFKRQEMEYFRKGEQVPERHKTLIEKNLMNINKVKQTLEILSKTYNRTNKDYENIIERLKKLE
>NZ_CP012004.1|WP_000077301.1|720650_721154_+|L,D-transpeptidase
MSQFKLEDADILIDLANQTLSLPKHNKFYVVSTGKNGIGEQENTGKTPRGWHRVAKKFGMQSPKNAVFIARQPTGEVYSSELAAQFPERDWILSRILWLDGLEEGFNKGEGHDTMQRYIYIHGTPDKEPMGVPMSHGCIRMRNEEIIELFDLVSEDALVYLSEQSLT
>NZ_CP012004.1|WP_001198160.1|722223_723009_-|YdcF-family-protein
MQVSKWIRIFLAVIGSILFLDGLFLAFLNKIHVGTLVPLVLGAFFCLYALFYYHLERFFFYHYRLHTLWRFGWLCFWIWLIGLGYFFNFIKENKDASQNLPAVKAIIVLGSGVENGEPSAILAKRLDTAAPVALSQPQAKVILTGGLDFSEKEPEALVMSRYLKQHFHITKDRMILEDKSTSTELNLKNSKPLLEQAHISVNQPIAIVTSDFHTPRAAAIAKKQGYTQVYMVAAETPLITRYNAWLREYFAYASGWLLNEY
>NZ_CP012004.1|WP_000473043.1|723135_725682_-|PepSY-domain-containing-protein
MFKKFLFQIHWFLGISAGLILSIMGVTGAIYSYDQQILKWVNTDSYVVQAQSSPKLTPAQLYQHFTTIQPEIKINSITIAKDPTASSVVNIEKEGERRGYNMMVNPYTAQVLPEVQGRKLLLLIQQIHRNLTAGEFGKQITGACALMLIYFVLSGLYLRWPKKHSARQWLAVKPKLKGRNFIWDLHAVVGTWVIVFYLLFACTGLYWSYDWWRSGMFKVLGVEQPKMQGHSGSGRNKDQLPKIQLDNAQLITALNQTWSGFNNQIGRDYSTLTVNLPKKDDGKIELSFVDATPQHERARNQAVYNYKTANIEKMELYEDKKLNQKIMSSMLPVHRGSFFGPVYQFVAMLASLAMPLFFVTGWMLYLKRRKQKKLTQAARQSLAGHYIDQNAKPWLITYATQTGVAEQLAWSTATSLQEAHQPVQVKSVQQLTEADLQQHEQILFVISTYGTGEAPDLASNFAKKLLKTNLELQHVKYAVLALGSKEYPDTYCSFGHTVDEWLKNNGAKAFFDIIEVDNANPADIQNWNQALVKATKLDLHAVNIEKVFDNWTLQQRDLLNPNSLGQPAYNIELTASHEAIWQAGDIAEIQPGNSPERINKFLQHHHILKNAVVDSLQVSIEKALWNKDLTGEIEPFANLDHLLEQLPTLPTREYSIASIPSQQVLRLVVRQQYDESGNLGLGSGWLTQHTEINQNVALRIRTNESFHLIDDNRPIICIGNGTGIAGLMSLLHTRTRHNYTENWLIFGERQRAHDFFYASTIEAWQTMGMLKRLDLAFSRDQEQRVYVQDIIRQNAAELINWIERGAVLYVCGSIDGMASGVDQALIHILGEEQVDELRQQGRYRRDVY
>NZ_CP012004.1|WP_000125649.1|725839_726415_-|SdpI-family-protein
MTAKTLYAYTLQPVPYEVSEAEQRNAQLLIWRSTNKISTKIWAIMGVILALAILGLIFIKNYSTVICWVAIVCVVLYYLGRKYGLEWYVKRKMNEFPVQEIKGIRLGVQPHGIVMRQQMGLQEGVGTIGWKNIYEWYNTPDFILVNFKVKDPKGQEQQGAYILPKRMDSKNFSFNTIRKHLKESVGEPKTL
>NZ_CP012004.1|WP_001984830.1|726515_728690_-|TIGR01666-family-membrane-protein
MKSWFKRLKRATYNTSFMYNVRMLIAFSGTAFVPYFLGHQLATIPLTLGVVAAGLSDIDDRFSVRIMNLIYTYIGFFITAASVQLLFPYPMLFALGLIASCIGWILLGSLGRRYATISYGCLVVSVYTMLGVHLFDQWYIQPALLVAGAAWYGLIATISFLLFPVRQLQDKLAASYASLGDFLFAKSNLFDVDMTPASYQQSMIDLSLENGKLITIFNDLKTALLTRLKGDRGQKGTRRSLHYYFVAQDIHERADSAHIDYQKLAKIFQHSDILFRFQRILAIQGKACQELNECILQRKPYIHNKRFKQSFENLRLSLVKLRDDQQYDLLWVNALFALYRNLKSIDSQLLNLETEQHIQSDKVKQAENQLKDDDLKGWNDIVVRIKQNLTPESVLFRHAIRVSIVLFIGYVFIQMTHIEYGYWIMLTALFVSQPNFNATKRRLRLRIVGTLVGIIVGLSIVFLVPSVEGQLVMLILSGVLFFELRSKQYAQATAFITILALINFNLDGSAVAAAIPRFVDTLIGCALAWFGVTFIWPDWKFRRLPRSIRRSLQAQCNYLAEVVKQYHEGHNHALNYRIVRRAAHNTDAEVASLISTLATEPDFDPTRKSDIFEFLCLNHTFLSYIAALGAHREKIQDQAVLNVLDQALDDIQGALLRDEMPDLTAQNMLQTIRQRLSQNDEDDQKSLIILQQLSLMLSVLNRFSMLKQRLSHDLDNDASELASL
>NZ_CP012004.1|WP_000003696.1|728817_730032_+|multidrug-effflux-MFS-transporter
MSEQTAQRQYSIGWIMLLALLTALGPLSIDMYLPALPQMAHDFGVSTQMVANTLPAYFFGLAIGQLVYGPLSDRIGRKKPLYFGLALYAVASLFCVLATNEWSLIAARILQALGGCVGVVMARAAIRDRLDVQGSAQAFSSMMIVMGLAPILAPMIGAWILIWFPWQAIFIALLIVGAICWLCVHFFFKETLAVDKRLKLSLYQVATLYGAIFKDASFRLPMFAGCLTGAALFCYISSAPAVFMDQYGLNQQEFAYVFGLNAFGIMLMSSLNKHLTTRVEITKRLKAGSMVQVTGASIVLIAGLISAAPLWLVMLGLFLAISGIGLTGPNAMALAMSKQGARAGTASAIMGSMQFACGLLGGVLLNFLIWSASLNMGVMMVLFTLSGFIVVLKAIRQAKSQSLS
>NZ_CP012004.1|WP_001047593.1|730059_730764_-|nitroreductase
MNLEQVRLVDEAITSRHSVRAFLSTPIEPEVIKDILRVASRAPSGTNTQPWKVYVVTGHKRDEMVERVCAAQIEVSKNPELAEQYKETFAYYPEKWVSPFIDRRRENGWGLYGLLDIKKGEKEKMAAQQLRNFKLFDAPVGIFFTVNKAMGIGSKMDIAMMIQNVMVAAKARGLDTCPQAAWNHFHPLVLDILGAADDEELVCAIALGHADPEHIVNTFITPREPVENFAVFLD
>NZ_CP012004.1|WP_002010643.1|731274_731478_+|hypothetical-protein
MSLPLINKQFMKQGLAITIATMKMNVTHATTEPQEIQQLGTDLNALFFNEKEKGTDSRVMTMACYSL
>NZ_CP012004.1|WP_000490937.1|731660_731801_+|hypothetical-protein
MFSGAMNLFYLKGAFSHVTFKGLVLGMMLLKLVTVIAIQVTLKVFP
>NZ_CP012004.1|WP_001005337.1|731900_733376_+|alanine:cation-symporter-family-protein
MNEQLNATLMSWVQFFNEPLWDFLVIFLLAVGIFYTVLTGAVQIRMFLQSIRVMKSSRTEGEDEHGLTPFQAFVTGLASRVGVGNIAGVAIAIAIGGPGAVFWMWVTAVLGMSSAFIESTLAQLFKVRDSNSKQFRGGPAYYITQGLRSKTFGVIFALALIFTYGFVFNSVQINAIANASSHAWGWDKANLIAHLGGVDLEISWVGLALVVMVALAIFGGIKRIAKFAEMFVPLKAGLYLSVALYIALSNYAILPDVLKLIVTEAFHFNAAAGGFFGAAVSMAMMQGIKRGLFSNEAGMGSAPNAAAASDVKHPVNQGLVQMLGVFVDTFIVCTSTAIIILVSGVYQDAGFVGVELTQRALETQVGHWGADFLAVLLFLFCYSAVLGNYAYAESNVQFINNNPKVMFIFRIFVLVMVYFGAIGSVPLVWSMADLFMGIMATINLVAILLLTPMARTLLKDYRAQLKQGIKEPVFKINKYPELKKKVDSDIW

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Crispr_ID: NZ_CP012004_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012004_2

1983975-1984056

Orphan

Consensus_repeat	Method
AAAGCGTTGCTTTACTTATCCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012004_2

>merge|NZ_CP012004|2|1983975-1984056|CRISPRCasFinder
AAAGCGTTGCTTTACTTATCCTCTTCCACTCGAGCACAGCTCTCGTCTTGCGCTCGGGTAAAGCGTTGCTTTACTTATCCTC

>NZ_CP012004|2|2|1983975-1984056|CRISPRCasFinder
AAAGCGTTGCTTTACTTATCCTC	TTCCACTCGAGCACAGCTCTCGTCTTGCGCTCGGGT
AAAGCGTTGCTTTACTTATCCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012004.1\|WP_000465448.1\|1985713_1986409_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293810
NZ_CP012004.1\|WP_001983845.1\|1979604_1980000_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP012004.1\|WP_001096437.1\|1986601_1987873_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP012004.1\|WP_000080816.1\|1976482_1977226_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP012004.1\|WP_000822383.1\|1981967_1982972_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235763
NZ_CP012004.1\|WP_001186397.1\|1977467_1978817_+\|chromate-efflux-transporter	unknown	unknown	gnl\|CDD\|273350
NZ_CP012004.1\|WP_000331400.1\|1979996_1980851_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
NZ_CP012004.1\|WP_001023738.1\|1981017_1981935_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP012004.1\|WP_000771640.1\|1978900_1979509_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|234675
NZ_CP012004.1\|WP_000428990.1\|1974720_1976454_-\|fumarate-reductase/succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|181346
NZ_CP012004.1\|WP_005135315.1\|1992215_1993751_-\|2-oxo-acid-dehydrogenase-subunit-E2	unknown	unknown	gnl\|CDD\|237001
NZ_CP012004.1\|WP_005135314.1\|1990801_1992205_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|235798
NZ_CP012004.1\|WP_001133053.1\|1993752_1994772_-\|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|223101
NZ_CP012004.1\|WP_000642313.1\|1988901_1989960_-\|2,3-butanediol-dehydrogenase	unknown	unknown	gnl\|CDD\|176195
NZ_CP012004.1\|WP_000864076.1\|1974454_1974700_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|224069
NZ_CP012004.1\|WP_000364555.1\|1996112_1997099_+\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|237261
NZ_CP012004.1\|WP_000925658.1\|1983081_1983873_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_CP012004.1\|WP_005135313.1\|1987942_1988854_+\|bestrophin	unknown	unknown	gnl\|CDD\|376448
NZ_CP012004.1\|WP_001177517.1\|1994785_1995748_-\|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha	unknown	unknown	gnl\|CDD\|238958
NZ_CP012004.1\|WP_000238445.1\|1989989_1990775_-\|acetoin-reductase	unknown	unknown	gnl\|CDD\|187624

Protein	Function_ID	Function_description	E-value
NZ_CP012004.1\|WP_000465448.1\|1985713_1986409_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293810	cd07724, POD-like_MBL-fold, ETHE1 (PDO type I), persulfide dioxygenase A (PDOA, PDO type II) and related proteins; MBL-fold metallo-hydrolase domain. Persulfide dioxygenase (PDO, also known as sulfur dioxygenase, SDO, EC 1.13.11.18) is a non-heme iron-dependent oxygenase which catalyzes the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria. Mutations in ethe1 (the human PDO gene) are responsible for a rare autosomal recessive metabolic disorder called ethylmalonic encephalopathy. Arabidopsis thaliana ETHE1 is essential for embryo and endosperm development. Bacterial ETHE1-type PDOs are also called Type 1 PDOs. Type II PDOs (also called PDOAs), are mainly proteobacterial. These enzymes belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	2.29474e-86
NZ_CP012004.1\|WP_001983845.1\|1979604_1980000_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	1.15826e-39
NZ_CP012004.1\|WP_001096437.1\|1986601_1987873_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	6.32768e-122
NZ_CP012004.1\|WP_000080816.1\|1976482_1977226_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	2.95412e-75
NZ_CP012004.1\|WP_000822383.1\|1981967_1982972_-\|hypothetical-protein	gnl\|CDD\|235763	PRK06270, PRK06270, homoserine dehydrogenase; Provisional.	4.07312e-78
NZ_CP012004.1\|WP_001186397.1\|1977467_1978817_+\|chromate-efflux-transporter	gnl\|CDD\|273350	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family. Members of this family probably act as chromate transporters, and are found in Pseudomonas aeruginosa, Alcaligenes eutrophus, Vibrio cholerae, Bacillus subtilis, Ochrobactrum tritici, cyanobacteria and archaea. The protein reduces chromate accumulation and is essential for chromate resistance. [Transport and binding proteins, Anions].	1.33551e-60
NZ_CP012004.1\|WP_000331400.1\|1979996_1980851_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	4.38745e-34
NZ_CP012004.1\|WP_001023738.1\|1981017_1981935_+\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	8.67813e-15
NZ_CP012004.1\|WP_000771640.1\|1978900_1979509_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|234675	PRK00170, PRK00170, azoreductase; Reviewed.	3.23768e-86
NZ_CP012004.1\|WP_000428990.1\|1974720_1976454_-\|fumarate-reductase/succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|181346	PRK08275, PRK08275, putative oxidoreductase; Provisional.	0
NZ_CP012004.1\|WP_005135315.1\|1992215_1993751_-\|2-oxo-acid-dehydrogenase-subunit-E2	gnl\|CDD\|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	7.2815e-113
NZ_CP012004.1\|WP_005135314.1\|1990801_1992205_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|235798	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.	0
NZ_CP012004.1\|WP_001133053.1\|1993752_1994772_-\|alpha-ketoacid-dehydrogenase-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	3.26675e-168
NZ_CP012004.1\|WP_000642313.1\|1988901_1989960_-\|2,3-butanediol-dehydrogenase	gnl\|CDD\|176195	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.	0
NZ_CP012004.1\|WP_000864076.1\|1974454_1974700_-\|ferredoxin-family-protein	gnl\|CDD\|224069	COG1146, COG1146, Ferredoxin [Energy production and conversion].	3.35255e-10
NZ_CP012004.1\|WP_000364555.1\|1996112_1997099_+\|lipoyl-synthase	gnl\|CDD\|237261	PRK12928, PRK12928, lipoyl synthase; Provisional.	0
NZ_CP012004.1\|WP_000925658.1\|1983081_1983873_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	6.08411e-23
NZ_CP012004.1\|WP_005135313.1\|1987942_1988854_+\|bestrophin	gnl\|CDD\|376448	pfam01062, Bestrophin, Bestrophin, RFP-TM, chloride channel. Bestrophin is a 68-kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE). It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterized by a depressed light peak in the electrooculogram. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localized to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties. The bestrophins are four-pass transmembrane chloride-channel proteins, and the RFP-TM or bestrophin domain extends from the N-terminus through approximately 350 amino acids and contains all of the TM domains as well as nearly all reported disease causing mutations. Interestingly, the RFP motif is not conserved evolutionarily back beyond Metazoa, neither is it in plant members.	5.2685e-82
NZ_CP012004.1\|WP_001177517.1\|1994785_1995748_-\|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha	gnl\|CDD\|238958	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).	1.46231e-132
NZ_CP012004.1\|WP_000238445.1\|1989989_1990775_-\|acetoin-reductase	gnl\|CDD\|187624	cd05366, meso-BDH-like_SDR_c, meso-2,3-butanediol dehydrogenase-like, classical (c) SDRs. 2,3-butanediol dehydrogenases (BDHs) catalyze the NAD+ dependent conversion of 2,3-butanediol to acetonin; BDHs are classified into types according to their stereospecificity as to substrates and products. Included in this subgroup are Klebsiella pneumonia meso-BDH which catalyzes meso-2,3-butanediol to D(-)-acetonin, and Corynebacterium glutamicum L-BDH which catalyzes lX+)-2,3-butanediol to L(+)-acetonin. This subgroup is comprised of classical SDRs with the characteristic catalytic triad and NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.07969e-113

>NZ_CP012004.1|WP_000925658.1|1983081_1983873_-|sulfite-exporter-TauE/SafE-family-protein
MLLLVVEGIVIGFLLGLTGAGGGILAVPALMTSQGWSVAQAAPIGLLAVALSTLIGTIEGLFKKIVRYRAAIWIALIGAPMAHIGILIANTISPIWLMLMFSLVMFTVGYRLISNRVSDFHNPPCQVNPSTGRFIWNFKTGSVLASIGIIAGLLTGMLGVGGGFVIVPALRKVTNLDMHSIVATSLMIIFLISGMSIVMHIAEGFHYPVAITSAFALACAFGMLLGRRAIRFIPSAIVQRVFALMVFAVAIYMVIKIVNLTNI
>NZ_CP012004.1|WP_000822383.1|1981967_1982972_-|hypothetical-protein
MKRINVAICGFGRIGQQIAELLLNRSTYYKQKYQIDARLVGVCNSSSGLIDQEGLQASKWLDKTQYQAGLTEQKFLEQVQADVIIETGPSDYVTGGKGLFYLNYALTHNMNAIAVSKGALVVEGKKIISLAHQHNKKLFFSGATAAALPTVDLFEYNLAGCQILEIEGVFTGTTNFILNDMLQHECAFADSLEKAQAKGIAEPNSSFDVDGWDTAAKITILANTVLGADVKIQDIPRQGISHVTADHIRDWKKENVIPRLVGFIHVKNQQIQTGVELRLVPANHPFAHLQGSNKCIRVLTQEMGEFVVSGGASAPLATAAAALKDFELMLKTGC
>NZ_CP012004.1|WP_001023738.1|1981017_1981935_+|EamA-family-transporter
MNILLYVAVVLIWGTTWIGIAVQSHYATPVVAILWRFAISALLLWVVLLFLGKLQRIALKDHLFCMLQGLCVFGLNFICFYTAVKYVNSGLESVIFSMAVFFNAINALIFFKQKPSPNFAPAALLGLSGIVLLFWHDLINSQFNAQLLMGIGLCAIGTYGFSLGNMISVRHQKRGLNIFSTNCYAMTYGALVMLILALFTGQDLMPPMNFPFLSSVLYLAVFGTVIGFSAYFSLVGRIGAAKAAYSTLLFPLVALTVSTFFEGYEWTLNAVFGILLILLGNYLMFSKFEIGKKLFSNQKNCEKQA
>NZ_CP012004.1|WP_000331400.1|1979996_1980851_-|AraC-family-transcriptional-regulator
MAYQTLEQLQQSKAKLHETVVLDENMQLAFWSNQQDRVSVCSDHHTLSLYIQDGYESYQKTPAGWKNGGGPGRFCLLPEHQESTWDIRGGLKFVHLYYTDQHLRDVAEKIWDKEPNQIELNEVVFNDDERIRALYQFFLLDCDWQDSSNHLQMSTTASLLLNHLIRKYSSVQWQQPTIKGGLAPHKLKYIQEWIEDHLDQALTLSDLANVVNLSEYHFAHMFKQSMNMAPHQYVMQRRLTKAKGLIQSSQLSLQDIALVCGFSSASHLSHRFKQFYGMSPSQLR
>NZ_CP012004.1|WP_001983845.1|1979604_1980000_+|helix-turn-helix-transcriptional-regulator
MTVTIPHDIQSSDCQRVSQVLARVGEKWSILIVMTLASHPHRFSEIKRRINGISQRMLTLCLRGLERDGLVKRTVYPVVPPHVEYELTPLGHSLTEPVIALGQWAQQHIADIDAARAAFDAAQEKPITLDT
>NZ_CP012004.1|WP_000771640.1|1978900_1979509_-|NAD(P)H-dependent-oxidoreductase
MKLLQIDTSILGEQSVSRQLTSSVIRQLSTAYPDAEIIHHDFALEPIPHLSDAEFLAWQGVEPNNEAAQQRVARNTQYLDEFLSSDIVVIGAPMYNFSFPSQLKAWLDRLSVAGKTFRYTENGPQGLVEGKRVIIASSRGGVYSEGSPAEALDYQETYIKAFFNFIGVTDITFVRAEGIAFGPEARQAALDNAAAQIAQLAG
>NZ_CP012004.1|WP_001186397.1|1977467_1978817_+|chromate-efflux-transporter
MQQKQLNTPDDSVEQVTFWQAFLFWLKLGFISFGGPAGQIAVMHQELVEQKRWISEKRFLHALNYCMLLPGPEAQQLATYIGWLMHRTVGGLVAGILFVLPSLFILIGLSWVYIKFGDVPVIAGIFYGIKPAVTAIVFHATYRIGSRSLKNKFLWVVAIAAFFAIFVLKLPFPLIVLSAGIAGYLASKKYPELFSSAGGHKASQKDYGPAYIDDDTPTPEHAKFHWSRLARLIFVAIALWLLPILALGAYFGWHHSYTQMAWFFTKAALLTFGGAYAVLPYVYQGAVNHFGWLSPTQMIDGLALGETTPGPLIMVVAFVGFLGGVNHSLLGSEHLFFAGALGAVIVTWFTFLFSFVFIFAGAPIIESTHNEIKFTAPLTAITAAVVGVILNLALFFSYHVLWPQGFSGHFDIVAALITVAAFIALFRFNINVLYVIFASALVGLAVTFF
>NZ_CP012004.1|WP_000080816.1|1976482_1977226_-|GntR-family-transcriptional-regulator
MSQLPQDPKNHKPLYDQLRELILNKIVNGEYAVLSQIPSENEFAEQFGVSRITVRQALNQLQLEGYIFKVPGKGTFVSKPKTFQNISSLQGFAEAMSSAGHEILNRVISAELKQIPMHVVPKLKLPVKANVYEIQRVRLLNRQPVSYELTYLPEHIGLKLKEKAIDLRTTDIFKALEQECDIPLGHADLSIDATVADEELAALLQVEIGTPVLRVERLTHDANGQPIDYEYLYFSGDTFQYRLRIHR
>NZ_CP012004.1|WP_000428990.1|1974720_1976454_-|fumarate-reductase/succinate-dehydrogenase-flavoprotein-subunit
MENKYLEFDIVVIGGGTAGPMAAIKAKQENPNLKVLLIEKANVKRSGAISMGMDGLNNAVIPGYATPEQYTKEITIANDGVVNQTTVYAYAKHSFTTIQQLDQWGIKFEKDETGEFAVKKVHHMGAYVLPMPEGHDVKKVLYRQLKRAQVKINNRIVTTKLLKNEQGAINGVLGFDCRSGDFYVIKTKAAILCCGAAGRLGLPASGYLMGTYENPTNAGDGYAMAYHAGAELANLECFQINPLIKDYNGPACAYVTGPLGGYTANSKGERFIECDYWSGQMMWEFYQELESGNGPVYLKVDHLAEETIQTIEEILHTNERPSRGRFHEGRGTNYRQDMVEMHISEIGFCSGHSASGVWVNEKAETSVKGLYSAGDMAAVPHNYMLGAFTYGWFAGVNAAQYVNAVEDSELNQSEIEAEKARIFAPLNCSEGLPPEQVEYKLRRFVNDYLQPPKTRQKMEIGLKRFEEIKQDIKRISARNPHELMRAAEVSFIRDCAEMAARASLFREESRWGLYHYRADFPQKNNSDWFCHAHLKKDEHGNMVSFKKPIEPYVVPINQDEAVSYDHLRIQKDVALAD
>NZ_CP012004.1|WP_000864076.1|1974454_1974700_-|ferredoxin-family-protein
MAFIFKEVQHRTVAPVIIDEDKCIADKGCTVCVDVCPMDLLAIDPTTQKAYMQFDECWYCMPCEKDCPTNAVKVNIPYLLK
>NZ_CP012004.1|WP_000465448.1|1985713_1986409_-|MBL-fold-metallo-hydrolase
MFFKQFFEKESSTYTYMLGCEETRGAVLIDPVASDIEIYAKELEQHQFTLIYTLDTHVHADHITAADLLRERFHCKSVLHRNSEVSCGDILITDGCMLKVGNLSIEARYTPGHTNACTSYLVGNMIFTGDALLIDGCGRTDFQQGNAGTLYDSIHKQLFSLPDNTILYPGHDYKGRLSSTIGYERLNNSRLGQNRSREDFIELMNNLNLPYPKQIDKALPANQACGSISQL
>NZ_CP012004.1|WP_001096437.1|1986601_1987873_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MAKLNFELEQDFYILFEQLKALFPNASLFLADTTTQAIHYKFNTDDISVENIAALTQDHHNQYLEINTPKMRKRFIYQEHDIYIAEHRIIGKLHILQPVSIENDIVDEVELTEQLQDLAKVFNSCSPEMTRMFSIIQRVAITEFPVLVRGESGSGKELVAKAIHDYSQRKNKIFVAINCAALNSNILESELFGHVKGAFTGAIRDHKGVFERAAGGTLFLDEIAEIPLELQAKLLRVLETGEFTPVGGEKPIQANVRIITATHKALREEAKAGRFRHDLLYRLRVIPIFIPPLRERKVDIPLIVDQILKESSTQLDTMPRHVNQKAMQVLLNYDWPGNVRELKNTLLYALTMANGKDEIEVEDLPNELLDADEYVKLPENNAELTPENVQAALEKYNHNLNMVANIFGISRTTLWRYRQKHKL
>NZ_CP012004.1|WP_005135313.1|1987942_1988854_+|bestrophin
MIVRDKSNVFKLLFAWKGTILPKVLPALSFVVLISACVVWLSYYHWIQIPTVPAIGFTIFGVILSICTGFRNNACYDRWWEGRKLWGALIANARHIVRDSHVLSNEKREHLIHQVLIFSNLLRDRLRQQTVEPTKFLEHAYLNNSSLNYLNEHINAPQFVLENIQKDLVKALKDGEISDIIYSTLNRHIIELGNIQAGCDRIAGTPLPYSYSVLLHRAVYCFCFILPFSLEAALGIWTPLIVGLIAYMFLGLDALSAQIEEPFGLQENDLPLDSIVRLIERESLSSLGQPLPPIIEAQNNNLL
>NZ_CP012004.1|WP_000642313.1|1988901_1989960_-|2,3-butanediol-dehydrogenase
MKAARFYDRGDIRIEDIPEPEVTPGTVGIKVAWCGICGTDLHEFMEGPIFIPPCGHPHPISGESAPITMGHEFSGVVYAVGEGVDDIEIGQHVVVEPYIVADDVPTGPGDNYHLSKNMNFIGLGGRGGGLSEKIAVKRRWVHPISNKIPLDQAALIEPLSVGHHAFVRSGAKAGDIALVGGAGPIGLLLSAILKAKGLKVIITELSAKRKEKAKESGVADYILDPSEVDVVSEVMKITNGDGVDVAFECSSVNKVLDTLVAAVKPTGVIVIVSIWSHPASINVHSVVMKELDVRGTIAYVNDHQETIKLVEEGKINLEPFITQRIQLDDLISQGFETLIHNNESAVKIIVHP
>NZ_CP012004.1|WP_000238445.1|1989989_1990775_-|acetoin-reductase
MVKGLKNKVVLVTGAAQGIGRGIALRLAQEGAHIALVDMKQDRLNDVQQEIQALGVNASTFIADVSDREQVYAAINHAEQALGGFDVMINNAGIAQVQAIADITPDEFQKIVDINIGGVLWGIQAAAAKFKQREHKGKIINACSIAGHDGFALLGIYSATKFAVRALTQAAAKEYASHGITVNGYCPGIVGTDMWVEIDKRFAEITGAAIGETYKKYVEGIALGRAQTPDDVAALVAFLASEDSDYITGQSILTDGGIVYR
>NZ_CP012004.1|WP_005135314.1|1990801_1992205_-|dihydrolipoyl-dehydrogenase
MSEAQFDLIVIGAGPGGYVAAIRAAQLGLKTAIVEERHLGGICLNWGCIPTKALLAGAELATQFKHAGQFGFQVSQLDFDIQKLVQHSRQVSAQLVQGIDYLLKKNQVTVFSGRAQLTAKEKIEVTDAQGNRQALSAPHIILATGAKARHVPQLPVDGTYVWSYKEALVPEQLPKSLLVVGSGAIGSEFASLYQDLGCQVTLIDLAKQILPTEDVEVAQFVRKQFEQKGMKVLTDAVVQSIQIENEQVHCVVETANDVQTLVFDRVLSAIGVQPNTTGLGLERLGVELNPQGFVAIDDYCKTNVAGLYAIGDVAGAPCLAHKASHEAMICVEKIAGVKNVHSLDRSQIPGCIFTHPQVASIGLTENAAKAKNLPIRIGKFSLTANGKALAIGDASGFVKTVVHAETGELLGAHMVGHEVTEHIQGFAIAKYLEATDESLAQVIFPHPTLSEAMHESILASMQRAIHM
>NZ_CP012004.1|WP_005135315.1|1992215_1993751_-|2-oxo-acid-dehydrogenase-subunit-E2
MSEIKTLEIPKWGLSMEEGTIAQWLIKEGDSFNKGDEICEIETTKIVNVLEAPFAGTLRKILAKDGDTLPVGGLIAVCADSEVSDAEIEKFIASLGGSAAQAPEAPSEQSKAETSAPVAEKTEQPQTVAASASAPAKVAKEDYAVPESLQGYQTSNELFATPHALKLAEKHNVNLAKVTGSGREGRISVQDIQKAVQAAGGQWPDVKQQTQAKVVKSTADDSQVLATPVARRLAKQWGINLNDCRVSGTRGRVCKEDVEAVYYRNNPTSVNEQPVQCAAQPQSTVTTVAMNGMRKAIASRLQAAKRNAPHFRLVVDLNVEALQKLRKQINETVPQVKLSINDMLIKAAAAALIKVPEVNVQFDEATQSILQFSQADISVAVAIPNGLITPIVKAANQKSLAQISDDMRDLATRAKTGKLQPDEFQGGSFSISNLGMLGIKQFDAIINPPQGAIMALGASESRAVVENGNVVVREIVTATLSCDHRVIDGAVGAKFLASFKQFVENPALILV
>NZ_CP012004.1|WP_001133053.1|1993752_1994772_-|alpha-ketoacid-dehydrogenase-subunit-beta
MPNKSFRNAIKEAIESEMRRDPTVFVVGEDVRGGHGGKNTEENQLEGFGGVLGVTKGLWTEFGSERVIDTPITESAIIGMAAGAAATGLRPVADLMFMDFYGVCHDMLYNQAAKFRYMFGGKAKAPMVVRGMIGAGFSAAAQHSQSPYNVFAAVPGLKVVVPSSPYDVKGLLIQAIRDDDPVVFCEHKMLYDIKGEVPDDAYTIPFGVANYTREGTDVTIIALGLMVHRANEVADKLAKDGISVEVVDPRTISPLDEEGILESVASTGRVVIVDESAARCGFGHDVAALIAQKGFHYLKAPVELVTPPHTPVPFSPVLEKEWIPSVERIEQAVRKTLEA
>NZ_CP012004.1|WP_001177517.1|1994785_1995748_-|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha
MQLTEEQLLAAYKRMRDIREFEDRLHEENTNGDIPGFIHLYSGEEAVAVGICENLTDKDYITSTHRGHGHCIAKGCDIHAMMLEIFGKDDGLCRGKGGSMHIADLDKGMLGANGIVGGGPPLAIGAALTAKTLKTGGVGLSFTGDGGSNQGLTFEAMNMAVVLKLPVIFVFENNGFGEGTGHDYAVGSKDIAGRAAGFGLPAVKVDGTDFFAVYEAAQTAIERARRGEGPSVIETITNRFYGHFEGDPGLIRSKEEVEFIKENKDPLKIFREKVKGKIDEAKLDEIDAASKANVDDAVAKARAAAYPKPEQLLTDVYVSY
>NZ_CP012004.1|WP_000364555.1|1996112_1997099_+|lipoyl-synthase
MDLKRQIETGIKLRGIDKVSRIPIKILPTEELPKKPEWIRAKITDFEEIQRIKNLLRQQKLHSVCEEAACPNLPECFGGGTATFMIMGDICTRRCPFCDVAHGRPMPLDENEPKHLAETVANLNLKYVVITSVDRDDLHDGGAAHFVKCIEEIRNRCPDTLIEILVPDFRGRLETALSTLSLSPPDVFNHNIETVPRLYKAMRPGSDYQHSLNLLKRFKKYCPDIKTKCGLMVGLGEIEAEVIALLNDLKDHDVDLVTIGQYLQPSKSHAPIHRFVNLQEFERYTQHGQRLGFKNIWSAPMVRSSYFADRQYFGESAPKPFSREDVLS

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Crispr_ID: NZ_CP012004_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012004_3

2342487-2342572

Orphan

Consensus_repeat	Method
CCAGCTTCACGAGCCTCTTCTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012004_3

>merge|NZ_CP012004|3|2342487-2342572|CRISPRCasFinder
CCAGCTTCACGAGCCTCTTCTGAGGTAAATTCATGTGCGTTACCACTGGCATGTGCAGCACGGCCAGCTTCACGAGCTTCTTCTGA

>NZ_CP012004|3|3|2342487-2342572|CRISPRCasFinder
CCAGCTTCACGAGCCTCTTCTGA	GGTAAATTCATGTGCGTTACCACTGGCATGTGCAGCACGG
CCAGCTTCACGAGCTTCTTCTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012004.1\|WP_001025680.1\|2332280_2332565_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379642
NZ_CP012004.1\|WP_000482091.1\|2348616_2349096_+\|CinA-family-protein	unknown	unknown	gnl\|CDD\|224463
NZ_CP012004.1\|WP_000132045.1\|2349707_2350025_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012004.1\|WP_002017921.1\|2332060_2332174_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012004.1\|WP_000795915.1\|2341186_2341423_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012004.1\|WP_001124844.1\|2340292_2340904_-\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	unknown	unknown	gnl\|CDD\|182350
NZ_CP012004.1\|WP_098713766.1\|2337294_2338941_+\|allantoin-permease	unknown	unknown	gnl\|CDD\|224374
NZ_CP012004.1\|WP_001145691.1\|2346891_2348301_-\|iron-containing-redox-enzyme-family-protein	unknown	unknown	gnl\|CDD\|379634
NZ_CP012004.1\|WP_000251637.1\|2351115_2351259_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012004.1\|WP_000115402.1\|2333664_2337129_-\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NZ_CP012004.1\|WP_000108365.1\|2349380_2349602_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237171
NZ_CP012004.1\|WP_104159542.1\|2344692_2346837_-\|catalase-HPII	unknown	unknown	gnl\|CDD\|236886
NZ_CP012004.1\|WP_001136759.1\|2350417_2350846_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012004.1\|WP_000885233.1\|2339610_2340222_+\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NZ_CP012004.1\|WP_000937461.1\|2331336_2331972_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP012004.1\|WP_000498478.1\|2350069_2350330_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012004.1\|WP_000432325.1\|2343758_2344637_+\|glucose-1-dehydrogenase	unknown	unknown	gnl\|CDD\|187613
NZ_CP012004.1\|WP_000107131.1\|2332708_2333668_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|381147
NZ_CP012004.1\|WP_000373858.1\|2338998_2339454_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP012004.1\|WP_000983539.1\|2343203_2343617_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP012004.1\|WP_001025680.1\|2332280_2332565_-\|N-acetyltransferase	gnl\|CDD\|379642	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase. This family of GCN5-related N-acetyl-transferases bind both CoA and acetyl-CoA. They are characterized by highly conserved glycine, a cysteine residue in the acetyl-CoA binding site near the acetyl group, their small size compared with other GNATs and a lack of of an obvious substrate-binding site. It is proposed that they transfer an acetyl group from acetyl-CoA to one or more unidentified aliphatic amines via an acetyl (cysteine) enzyme intermediate. The substrate might be another macromolecule.	1.0722e-24
NZ_CP012004.1\|WP_000482091.1\|2348616_2349096_+\|CinA-family-protein	gnl\|CDD\|224463	COG1546, CinA, Uncharacterized protein (competence- and mitomycin-induced) [General function prediction only].	5.88094e-21
NZ_CP012004.1\|WP_001124844.1\|2340292_2340904_-\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	gnl\|CDD\|182350	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit.	1.04764e-38
NZ_CP012004.1\|WP_098713766.1\|2337294_2338941_+\|allantoin-permease	gnl\|CDD\|224374	COG1457, CodB, Purine-cytosine permease and related proteins [Nucleotide transport and metabolism].	7.76628e-23
NZ_CP012004.1\|WP_001145691.1\|2346891_2348301_-\|iron-containing-redox-enzyme-family-protein	gnl\|CDD\|379634	pfam14518, Haem_oxygenas_2, Iron-containing redox enzyme. The CADD, Chlamydia protein associating with death domains, crystal structure reveals a dimer of seven-helical bundles. Each bundle contains a di-iron centre adjacent to an internal cavity that forms an active site similar to that of methane mono-oxygenase hydrolase.	1.37787e-18
NZ_CP012004.1\|WP_000115402.1\|2333664_2337129_-\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	2.60725e-58
NZ_CP012004.1\|WP_000108365.1\|2349380_2349602_+\|hypothetical-protein	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	5.30417e-06
NZ_CP012004.1\|WP_104159542.1\|2344692_2346837_-\|catalase-HPII	gnl\|CDD\|236886	PRK11249, katE, hydroperoxidase II; Provisional.	0
NZ_CP012004.1\|WP_000885233.1\|2339610_2340222_+\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	5.37012e-23
NZ_CP012004.1\|WP_000937461.1\|2331336_2331972_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	6.27413e-64
NZ_CP012004.1\|WP_000432325.1\|2343758_2344637_+\|glucose-1-dehydrogenase	gnl\|CDD\|187613	cd05355, SDR_c1, classical (c) SDR, subgroup 1. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.33703e-161
NZ_CP012004.1\|WP_000107131.1\|2332708_2333668_-\|response-regulator-transcription-factor	gnl\|CDD\|381147	cd19920, REC_PA4781-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains. Pseudomonas aeruginosa cyclic di-GMP phosphodiesterase PA4781 contains an N-terminal REC domain and a C-terminal catalytic HD-GYP domain, characteristics of RpfG family response regulators. PA4781 is involved in cyclic di-3',5'-GMP (c-di-GMP) hydrolysis/degradation in a two-step reaction via the linear intermediate pGpG to produce GMP. Its unphosphorylated REC domain prevents accessibility of c-di-GMP to the active site. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	6.80074e-55
NZ_CP012004.1\|WP_000373858.1\|2338998_2339454_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	8.09113e-40

>NZ_CP012004.1|WP_000795915.1|2341186_2341423_+|hypothetical-protein
MKNQRDAVLGYADEQHAYYIRLIENDAVLGESYGIFCENPESEAAESIMTTLFLKKSFWLNGSEFTDIVKGLHPLTHS
>NZ_CP012004.1|WP_001124844.1|2340292_2340904_-|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit
MPKKKEFEHGGARENAGRKAQFNEPTKVIRVPESQVNFIKNWLLNNVKTNNQTDFTSKLKIQQVHPNNDKIYHIPLATERVAAGFPSPAQDDIEQALDLNEYLIRNENATFIVKANSLSMLDAGIDIDDPLIVDRSIPAKSGDIVIALIDNDFTVKRLIIDTQFQPPKVWLKAENPDYQNIYIEEGQELVIWGVVTYNLKRMR
>NZ_CP012004.1|WP_000885233.1|2339610_2340222_+|LysE-family-translocator
MAFNIFIAFWSVSILFIITPGADWAYAISAGIKGKVVVPAVAGMLFGHFITILLVAAGVGLLVANNPTALMILTVAGSAYLLWMGINLLLTPPTPNKSGSEKAQSWLKWATKGVYVSGLNPKVFLLFLALLPQFIDTTASWSVTTQIVAFGVVHIISCAIIYLMVGYGSEAILKTRPQAAQLVGRFSGGLMVVIATCLLIGQI
>NZ_CP012004.1|WP_000373858.1|2338998_2339454_-|Lrp/AsnC-family-transcriptional-regulator
MDRIDKKILAELQLNGRLSITELAEKVGLSISPCHRRVKALEESGAIKGYRAELDPNLVGFEFSAIVFITLKEGDKQAVEKFENAVIEIPQIIQAQRLFGEPDYLLHVVAKDLPAFQRLYDEKLSAIPSVQRLISTIVMKDVVPERLFPIG
>NZ_CP012004.1|WP_098713766.1|2337294_2338941_+|allantoin-permease
MTENDWEIDVMSVSEHPNLDTVQGTDSQKAVNETLEDYTLRYAPHSFRRWSPKVVAITALGGIAYLADFSIGASIGMSYGTTNAVFSILFAAIIIFLTGIPLAYYAARYNIDLDLITRGAGFGYIGSVLTSIIFASFTFIFFALEGSIMAQGLLLGLGIPLWAGYLISTVMVIPLVIYGMKALSKLQVWTTPLWLVLMIGPVAYLIYQEPTLVSQFATFTGHEGFAPVDMAAIMLGAGICLSLIMQIGEQIDYLRFMPAKTKENSKAWWAAVISAGPGWVILGAIKQIIGAFLGFYLLTKIPGVNSTEPVQQFNAAFHDMLPGWAALTLAVILVVISQIKINVTNAYSGSLAWTSAYTRISKHYPGRIVFVIVNLAIALALMEGNMFAVLGKILGFYSNFAIAWVVVVATDISINKYVLKLSPKEPEYRRDMLYNVNPVGMVAFLVSAGLSIAAFFGLLGNFLAPYSPIIALVLAFVLTPIMGLLTKGKYYIKSHDDGVKEPRYDAEGTPVATVYHCRVCEQGYERPDIMFSHKHNGTICSLCKTLDA
>NZ_CP012004.1|WP_000115402.1|2333664_2337129_-|response-regulator
MSVMPDSSRPQQAPQRVIKTRREYNIWVADESIEDYALRYAPTSVRKWSPWTVTNTAISTVSFLAMEAIGATMLWQYGFSNAVWAAIVVCTIIFLTSWPISYYAAKYNVDVDLLTRGAGFGYIGSTITSLIYASFTFILLAFEAAIMAMALELALGIPQVIGYLISALVILPLVVKGIGFINKVQAITQPIWLLLLLLPWFFVLWKQPQILSSSLHFVGAVSNSTDFNLYYFGAACTLIFSFVIQIGEQADYLRFLPQKEKNRTAWRFAVFLGGPSWIIFGFLKVLMGMLLMVLAFQLFTPVSELDNPTYLYWVAYQQFIPNPQLALILTLALVCLAQIKINMTNAYAGSLAWSNFFARLTHSHPGRIVWLLFNVFIAIVLMEMGISHAVERILGLYSNIALAWIGAVVADLIICKPLGLSPKGIEFRRAYLYDINPVGVGALLIASVLSMLSYLGFFGLMAKGLASFIALGSAVLCVPIIAYLTKGKYYIARQPEKIQATSVANCVVCERDYELADMAGCPAYNGTICSLCCSLEARCHDLCKPDARWSVQLKKAIWHYLPERWASRLNSRVSLYLLLTLGLSIVLAVSLSLVYIQEKTYLETINAAAVPQLFTLFVKIYTILFLLMSVAAWWLVLNDESRRNAEIETHQQTALLIDEIAAHEVTSKDLQDARIAAERANDAKSRYVIGISHELRTPLNSILGYSQLLQKQEQLSEQGKMALGVISRSGQHLTSLIDGLLDLARIETGKISLNVVDVHFPNFIEQIIQMFQPQFEQKNLQFVYEIGENLPHYVRTDKKRLEQVLINLLGNALKFTTSGTITLKVEYRFQTAYFEIRDTGCGIAEADLERIFNPFERGSNVVQGGFTGTGLGLPIVKLLVDLLGGQLSVTSQLNQGSQFKIKFYLPSKEVVHPISNVYSNQITGYQGERKRILVVDNEAVDRGLVANFLKPLGFMIEEAESGIDCLRRVPIFQPNLILMDLNMPLMGGWETARLLRQNNITNVPILIISANAGEREVNPQDAVLSEDFMLKPIDLNLLLSKIGDKLGLVWIDSKSETLLENNDVQALDVKVFKQEQVTVHTLIQQPENNELLDFPQSLQQLNDLIGQGYIRGIQQTLTQCRQNFPKHNELWEQLEQAIQKFDLKHAQRLIQDKQ
>NZ_CP012004.1|WP_000107131.1|2332708_2333668_-|response-regulator-transcription-factor
MSTQHVSFQQASPNEQAVILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHRCLPDMILLDGNMPHMDGFESCIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHAKLLQQQKQVIDATETAILALDVHGKIVWKTQKASDLLNQYLPELEGFEAGLKAWFSDLEHEKDPKKLTSCSYSTPSQQLQLLLLTPWETEPSVAKNYLIQIKTTTPALEMADILKYCPQLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAHINSLVQEFH
>NZ_CP012004.1|WP_001025680.1|2332280_2332565_-|N-acetyltransferase
MNIQQKDDTKHGSFSLLDGETVAGEMTYTWAGESMLIIDATDVNENYRGQGVGRQLLDALVAFVREKDVKVIPLCPYAKSVFDKDPSIGDVLRK
>NZ_CP012004.1|WP_002017921.1|2332060_2332174_+|hypothetical-protein
MCNKFIFFPIGLKLFLLDKLFYKFDKFDLAIENLQIS
>NZ_CP012004.1|WP_000937461.1|2331336_2331972_-|amino-acid-ABC-transporter-permease
MLPQFFSATLTTLKISIISIILAIIVGLICSILITYRVRVLNRIAQFYIELSRNTPLLIQLFFLYYGLPKLGIKIDGFACGVIGLTFLGGSYMAEAFRAGLQSVAKGQIDSAKSIGLKPTQIFRYVIFPQALAISIPAIGANCLFLIKESSVVSAIAVVELLFVTKDLIGMDYKTTEALFLLIMAYLIILLPVSILTSYLEHRSRKVSHGT
>NZ_CP012004.1|WP_000983539.1|2343203_2343617_+|hypothetical-protein
MMQPIHTHSTLQYIHISVPEILLSNIQIKNSWQDYNQEWSYRLDPPHASHPFQRDLYIIKSKNIETEDIKKLLDNTVVKNSKNKDDLKNIVEAETVIKEILDLSNYIPIENWLNDTGNRSIVESMIDKNKVKLLDII
>NZ_CP012004.1|WP_000432325.1|2343758_2344637_+|glucose-1-dehydrogenase
MENTTNQYPSEVPAQVQPHQPGDQEKMHPEPEIIKASHKGSEKLKGKVAVISGGDSGIGRSVAVLFAREGADIAVLYLEEDQDAEITKQLIEKEGQQCLLLKGDISDPDLAKQNIDKVLQHFGKINILVNNAGVQYQQKEIESISNEQLEKTFKTNIFAMFYLTKEAIPYMEEGDSIINTTSITSYQGHDELIDYASTKGAITSFTRSLSNNLMKQKKGIRVNGVAPGPIWTPLIPSSFDAETVEKFGKDTPMGRMGQPSEVAPAYLFLASDDASYITGQVIHVNGGQIVNG
>NZ_CP012004.1|WP_104159542.1|2344692_2346837_-|catalase-HPII
MDMNDNTKSTNKTSEMAGADAANKANTTQKTEQLDTVRDDATNEALTTNQGVKIADNQNSLRAGIRGSTLLEDFILREKITHFDHERIPERIVHARGVGAHGYFQAYEGNERLTKAGFLTDPTIQTPIFVRFSTVQGPRGSADTVRDIRGFAIKFYTQEGNFDLVGNNAPVFFVQDGIKFPDFVHAVKPEPDTEIPTGATAHDTFWDFVSLVPESAHAVIWAMSDRAIPRNLRSIQGFGVHTFRLINAEGKSHFVKFHWTPKQGLSALVWDEAQKLAGKDPDFHRRDLYEAIEQGFYPEWELGVQIVEEEDEMNFDFDLLDPTKIIPEELVPVTPIGRFVLNRNVDNFFAETEQVAFCPGHVVPGIDFTDDPLLQARLFSYTDTQLSRLGGPNFHQIPINKPVCPFHNNQRDGIHQHTIHKGQAAYQPNSIDGNWPAETPPAASNGGFESYPEKISGHKLRQRSETFSDYFSQPRLYYKSLAPHEQKHVVDAYTFELSKVQRKHIRERQVQQILANIDLDLARQVGANLGIEVPDLTLNYKKTAVEKSAKLSFLAFPPEDIQGRKVAVLIHNMVKSDALEAIKNWAIKEGVILHLLAPSLAPVKDHKDNVIVADGMQMSEPSIAYDAVIIPDGDNLNTVMQDGVARHYLLEAYKHLKPIVFLGNKSDLLEPLGLVADEGTLIEDEFQHVTEKFKNLIKAHRVWSREQIAAHVPA
>NZ_CP012004.1|WP_001145691.1|2346891_2348301_-|iron-containing-redox-enzyme-family-protein
MPVVVKKRLLDLLQDNQQNYYELFVFFLDPDVSSFEKEKKARDFLVKEIDKLEMKEIDFPSDINLIKAWCENDNKKNCQEFQAYLNRRQSGQDREYFKNVAQAFEFLIKVSPTKKVDGAWLYSSVHYWNDPIFHELIITYLEELGLGEPKANHVCIYDDLLRSLGLDSFDLLLEDEYYHQAVVQLALGYAPPEFIPEIVGFNLGYEQLPLHLLISNYELAELGIDSKYFNLHITIDNIDNGHAYKAIKVIEDIYNKYRDKELFLTKLKRGFALNNHGVSSSNIIKNLNTEDFVHRIFKRKALVGQLIHNETRQFGCKTINQWLSNPDDIAGLITHLTEHKWIKFNTDPEQSVFWRMINEENGKMFGVFNPVERQIIHDWIAGSGHSSSFLAYSRELKNSQRIQDYLFSYISDGELDALQERVQQSSDLAIKICKLTPFLAPDSHHKSIGLWSTRKYVELLFPYLGTFKN
>NZ_CP012004.1|WP_000482091.1|2348616_2349096_+|CinA-family-protein
MFNKCCELLAKEKIKIAFFESASAGYLAYRFSLSPYSGDILIGSLVSYDLRVKENTLHISEELIEKYTAESMQVTVEMINKGKELLHADLYVACTGLLKKGGSETPEKPVGTFFYSIYYKNNFYNFRRVLRGPAFLKLRKLIYYVTQDIKLIILEDKRR
>NZ_CP012004.1|WP_000108365.1|2349380_2349602_+|hypothetical-protein
MSTTNNQANQRNNQQQQQQQNDNRNQQQHGNQQQNDQQQQNNQQQQQNDNRGQQQGSNQKDSGQQNSNNNQQR
>NZ_CP012004.1|WP_000132045.1|2349707_2350025_+|hypothetical-protein
MTDQNTDHAQLVAGDHNYSDSRWRESYLTRPYYQEAQLTTPDLDYDRDFSAAYELGHRARSESKEGTQFEDMEGSLQQKWEELKAESRLKWEHAKQAIKDAWDDM
>NZ_CP012004.1|WP_000498478.1|2350069_2350330_-|hypothetical-protein
MFVYFTDGTCINDSEIYGVKAKYEQNKYVVEVTIKPTHVLATTPSVQFKKEVFDDPNLANQYLSHNFNMPPFFDAHNVMTIKKPIS
>NZ_CP012004.1|WP_001136759.1|2350417_2350846_-|hypothetical-protein
MPQYLKIAEKIYQNVKEKKGFTDDPMEDLNNLMIELRQEIKGTKLKLLYNYIDFAEILIKPLQESKIKLDLSLIPKSKNTQEFVLWLAGFIERITTGGQEKLPPIRAKITLPAYAYEETYPSQKKPVNNGEEIIEYFKKNQS
>NZ_CP012004.1|WP_000251637.1|2351115_2351259_-|hypothetical-protein
MVRIFCAVSMVLAIAMGMSACQDRNSRNDGMHEASDPATSHDMNKNS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012004_2	2.1\|1983998\|36\|NZ_CP012004\|CRISPRCasFinder	1983998-1984033	36	NZ_CP012711	Psychrobacter urativorans strain R310.10B plasmid 5, complete sequence	43400-43435	3	0.917
NZ_CP012004_2	2.1\|1983998\|36\|NZ_CP012004\|CRISPRCasFinder	1983998-1984033	36	NZ_CP024448	Moraxella osloensis strain NP7 plasmid pNP7-5, complete sequence	20098-20133	4	0.889
NZ_CP012004_2	2.1\|1983998\|36\|NZ_CP012004\|CRISPRCasFinder	1983998-1984033	36	NZ_CP024446	Moraxella osloensis strain NP7 plasmid pNP7-3, complete sequence	63667-63702	5	0.861
NZ_CP012004_2	2.1\|1983998\|36\|NZ_CP012004\|CRISPRCasFinder	1983998-1984033	36	NZ_CP024445	Moraxella osloensis strain NP7 plasmid pNP7-2, complete sequence	29619-29654	6	0.833
NZ_CP012004_2	2.1\|1983998\|36\|NZ_CP012004\|CRISPRCasFinder	1983998-1984033	36	NZ_CP024186	Moraxella osloensis strain TT16 plasmid p1, complete sequence	95169-95204	6	0.833
NZ_CP012004_2	2.1\|1983998\|36\|NZ_CP012004\|CRISPRCasFinder	1983998-1984033	36	NZ_CP024186	Moraxella osloensis strain TT16 plasmid p1, complete sequence	29226-29261	6	0.833
NZ_CP012004_2	2.1\|1983998\|36\|NZ_CP012004\|CRISPRCasFinder	1983998-1984033	36	NZ_CP024177	Moraxella osloensis strain YHS plasmid pYHS1, complete sequence	95137-95172	6	0.833
NZ_CP012004_2	2.1\|1983998\|36\|NZ_CP012004\|CRISPRCasFinder	1983998-1984033	36	NZ_CP024177	Moraxella osloensis strain YHS plasmid pYHS1, complete sequence	29194-29229	6	0.833
NZ_CP012004_2	2.1\|1983998\|36\|NZ_CP012004\|CRISPRCasFinder	1983998-1984033	36	NZ_CP024186	Moraxella osloensis strain TT16 plasmid p1, complete sequence	25313-25348	8	0.778
NZ_CP012004_2	2.1\|1983998\|36\|NZ_CP012004\|CRISPRCasFinder	1983998-1984033	36	NZ_CP024177	Moraxella osloensis strain YHS plasmid pYHS1, complete sequence	25281-25316	8	0.778
NZ_CP012004_2	2.1\|1983998\|36\|NZ_CP012004\|CRISPRCasFinder	1983998-1984033	36	NZ_CP040258	Moraxella osloensis strain MOXF1 plasmid pMOXF1, complete sequence	46821-46856	8	0.778
NZ_CP012004_2	2.1\|1983998\|36\|NZ_CP012004\|CRISPRCasFinder	1983998-1984033	36	NZ_CP024446	Moraxella osloensis strain NP7 plasmid pNP7-3, complete sequence	38673-38708	9	0.75
NZ_CP012004_2	2.1\|1983998\|36\|NZ_CP012004\|CRISPRCasFinder	1983998-1984033	36	NZ_AP017383	Moraxella osloensis strain KMC41 plasmid pMOSL2, complete sequence	53808-53843	9	0.75
NZ_CP012004_2	2.1\|1983998\|36\|NZ_CP012004\|CRISPRCasFinder	1983998-1984033	36	NZ_CP024183	Moraxella osloensis strain KSH plasmid p3, complete sequence	11703-11738	9	0.75

1. spacer 2.1|1983998|36|NZ_CP012004|CRISPRCasFinder matches to NZ_CP012711 (Psychrobacter urativorans strain R310.10B plasmid 5, complete sequence) position: , mismatch: 3, identity: 0.917

ttccactcgagcacagctctcgtcttgcgctcgggt	CRISPR spacer
tcccactcgagcacagctctcgtcttgggctcgggc	Protospacer
*.************************* *******.

2. spacer 2.1|1983998|36|NZ_CP012004|CRISPRCasFinder matches to NZ_CP024448 (Moraxella osloensis strain NP7 plasmid pNP7-5, complete sequence) position: , mismatch: 4, identity: 0.889

ttccact-cgagcacagctctcgtcttgcgctcgggt	CRISPR spacer
-tccactacgagcatagctctcgccttgcgctcgggc	Protospacer
 ****** ******.********.************.

3. spacer 2.1|1983998|36|NZ_CP012004|CRISPRCasFinder matches to NZ_CP024446 (Moraxella osloensis strain NP7 plasmid pNP7-3, complete sequence) position: , mismatch: 5, identity: 0.861

ttccactcgagcacagctctcgtcttgcgctcgggt	CRISPR spacer
gcccactcgagcatagctctcgccttgcgctcgggc	Protospacer
 .***********.********.************.

4. spacer 2.1|1983998|36|NZ_CP012004|CRISPRCasFinder matches to NZ_CP024445 (Moraxella osloensis strain NP7 plasmid pNP7-2, complete sequence) position: , mismatch: 6, identity: 0.833

ttccactcgagcacagctctcgtcttgcgctcgggt	CRISPR spacer
aatcactcgagcacagctctcgccttgcactcgggc	Protospacer
  .*******************.*****.******.

5. spacer 2.1|1983998|36|NZ_CP012004|CRISPRCasFinder matches to NZ_CP024186 (Moraxella osloensis strain TT16 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.833

ttccactcgagcacagctctcgtcttgcgctcgggt	CRISPR spacer
aatcactcgagcacagctctcgccttgcactcgggc	Protospacer
  .*******************.*****.******.

6. spacer 2.1|1983998|36|NZ_CP012004|CRISPRCasFinder matches to NZ_CP024186 (Moraxella osloensis strain TT16 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.833

ttccactcgagcacagctctcgtcttgcgctcgggt	CRISPR spacer
gcctactcgagcatagctctcgccttgcgctcgggc	Protospacer
 .*.*********.********.************.

7. spacer 2.1|1983998|36|NZ_CP012004|CRISPRCasFinder matches to NZ_CP024177 (Moraxella osloensis strain YHS plasmid pYHS1, complete sequence) position: , mismatch: 6, identity: 0.833

ttccactcgagcacagctctcgtcttgcgctcgggt	CRISPR spacer
aatcactcgagcacagctctcgccttgcactcgggc	Protospacer
  .*******************.*****.******.

8. spacer 2.1|1983998|36|NZ_CP012004|CRISPRCasFinder matches to NZ_CP024177 (Moraxella osloensis strain YHS plasmid pYHS1, complete sequence) position: , mismatch: 6, identity: 0.833

ttccactcgagcacagctctcgtcttgcgctcgggt	CRISPR spacer
gcctactcgagcatagctctcgccttgcgctcgggc	Protospacer
 .*.*********.********.************.

9. spacer 2.1|1983998|36|NZ_CP012004|CRISPRCasFinder matches to NZ_CP024186 (Moraxella osloensis strain TT16 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.778

ttccactcgagcacagctctcgtcttgcgctcgggt	CRISPR spacer
gcccactcgagcatagctctcgccttgcgtcggggc	Protospacer
 .***********.********.******.. ***.

10. spacer 2.1|1983998|36|NZ_CP012004|CRISPRCasFinder matches to NZ_CP024177 (Moraxella osloensis strain YHS plasmid pYHS1, complete sequence) position: , mismatch: 8, identity: 0.778

ttccactcgagcacagctctcgtcttgcgctcgggt	CRISPR spacer
gcccactcgagcatagctctcgccttgcgtcggggc	Protospacer
 .***********.********.******.. ***.

11. spacer 2.1|1983998|36|NZ_CP012004|CRISPRCasFinder matches to NZ_CP040258 (Moraxella osloensis strain MOXF1 plasmid pMOXF1, complete sequence) position: , mismatch: 8, identity: 0.778

ttccactcgagcacagctctcgtcttgcgctcgggt	CRISPR spacer
ccccactcgagcatagctctcgccttgcgtcggggc	Protospacer
..***********.********.******.. ***.

12. spacer 2.1|1983998|36|NZ_CP012004|CRISPRCasFinder matches to NZ_CP024446 (Moraxella osloensis strain NP7 plasmid pNP7-3, complete sequence) position: , mismatch: 9, identity: 0.75

ttccactcgagcacagctctcgtcttgcgctcgggt	CRISPR spacer
gctcactcgagcatagctctcgccttgcgtcggggc	Protospacer
 ..**********.********.******.. ***.

13. spacer 2.1|1983998|36|NZ_CP012004|CRISPRCasFinder matches to NZ_AP017383 (Moraxella osloensis strain KMC41 plasmid pMOSL2, complete sequence) position: , mismatch: 9, identity: 0.75

ttccactcgagcacagctctcgtcttgcgctcgggt	CRISPR spacer
gcccactcgagcatagctctcgccttgcgtcgcggc	Protospacer
 .***********.********.******..  **.

14. spacer 2.1|1983998|36|NZ_CP012004|CRISPRCasFinder matches to NZ_CP024183 (Moraxella osloensis strain KSH plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.75

ttccactcgagcacagctctcgtcttgcgctcgggt	CRISPR spacer
gcccactcgagcatagctctcgccttgcgtcgcggc	Protospacer
 .***********.********.******..  **.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1230971 : 1245769

Acinetobacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001187844.1\|1230971_1231520_-	GTP cyclohydrolase I FolE	A0A0P0HSD2	Acinetobacter_phage	1.7e-97	100.0
WP_000893681.1\|1231782_1233282_+	xanthine dehydrogenase small subunit	A0A0P0IVM8	Acinetobacter_phage	1.0e-277	96.6
WP_005134944.1\|1233283_1235659_+	xanthine dehydrogenase molybdopterin binding subunit	A0A0P0I429	Acinetobacter_phage	0.0e+00	99.6
WP_001164225.1\|1235665_1236649_+	xanthine dehydrogenase accessory protein XdhC	A0A0P0IKN7	Acinetobacter_phage	6.6e-188	98.8
WP_000066123.1\|1236659_1237355_-	Smr/MutS family protein	A0A0P0IDT4	Acinetobacter_phage	2.2e-121	99.6
WP_000608308.1\|1237364_1238171_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	1.8e-146	99.6
WP_001982145.1\|1238180_1239230_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	9.8e-190	100.0
WP_005134946.1\|1239585_1242318_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	0.0e+00	97.8
WP_109104826.1\|1242325_1245097_+	M1 family metallopeptidase	A0A0P0IY26	Acinetobacter_phage	0.0e+00	98.8
WP_000566784.1\|1245193_1245769_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	3.2e-110	100.0

DBSCAN-SWA_2

1591407 : 1639992

Acinetobacter_phage(90.2%)

capsid,integrase,terminase

attL 1591230:1591247|attR 1642100:1642117

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1591230:1591247	attL	NA	NA	NA	NA
WP_000773628.1\|1591407_1592670_+\|integrase	integrase family protein	A0A0P0IKP2	Acinetobacter_phage	3.6e-247	99.0
WP_000910238.1\|1592675_1592945_-	hypothetical protein	A0A0N7IRE8	Acinetobacter_phage	3.5e-43	100.0
WP_000005652.1\|1592945_1593203_-	hypothetical protein	A0A0P0J0B1	Acinetobacter_phage	3.2e-46	96.5
WP_000048748.1\|1593206_1593491_-	hypothetical protein	A0A0P0HSI5	Acinetobacter_phage	1.2e-44	97.9
WP_000147327.1\|1593487_1593895_-	hypothetical protein	A0A0P0IRG7	Acinetobacter_phage	7.5e-13	52.2
WP_000654848.1\|1593895_1594147_-	hypothetical protein	A0A0P0IVN4	Acinetobacter_phage	1.1e-38	98.7
WP_001061220.1\|1594148_1595357_-	hypothetical protein	A0A0D4DBR8	Acinetobacter_phage	4.4e-93	50.2
WP_001207475.1\|1595353_1596475_-	ATP-binding protein	A0A0N7IRE0	Acinetobacter_phage	1.5e-212	99.7
WP_000181044.1\|1596485_1596809_-	hypothetical protein	A0A0P0IVW1	Acinetobacter_phage	3.8e-44	80.4
WP_001101042.1\|1596811_1597252_-	hypothetical protein	A0A0N7IRF7	Acinetobacter_phage	5.4e-73	96.6
WP_000054453.1\|1597454_1598321_-	hypothetical protein	NA	NA	NA	NA
WP_000029179.1\|1598321_1599212_-	hypothetical protein	NA	NA	NA	NA
WP_000105766.1\|1599284_1599974_-	helix-turn-helix domain-containing protein	A0A2H4JAJ5	uncultured_Caudovirales_phage	2.0e-58	73.1
WP_001217697.1\|1600101_1600278_+	hypothetical protein	NA	NA	NA	NA
WP_000051076.1\|1600274_1600538_+	hypothetical protein	NA	NA	NA	NA
WP_001095599.1\|1600581_1600857_+	hypothetical protein	A0A0P0IVP2	Acinetobacter_phage	2.6e-41	98.9
WP_000102847.1\|1600853_1601138_+	hypothetical protein	NA	NA	NA	NA
WP_001091618.1\|1601134_1602688_+	DNA cytosine methyltransferase	Q5QF27	Pseudomonas_virus	2.4e-136	41.8
WP_001110402.1\|1602684_1603635_+	YdaU family protein	A0A0P0I481	Acinetobacter_phage	1.3e-95	61.4
WP_000544508.1\|1603627_1604377_+	hypothetical protein	A0A0N7IRF0	Acinetobacter_phage	7.8e-133	95.6
WP_000647824.1\|1604373_1604715_+	hypothetical protein	A0A0P0IKW4	Acinetobacter_phage	4.6e-32	57.1
WP_053100974.1\|1605397_1605586_+	hypothetical protein	NA	NA	NA	NA
WP_000097328.1\|1605585_1605990_+	DUF1064 domain-containing protein	A0A0R6PIZ9	Moraxella_phage	5.2e-22	50.9
WP_000992310.1\|1605992_1606430_+	hypothetical protein	NA	NA	NA	NA
WP_000991752.1\|1606690_1607491_+	hypothetical protein	B6SD57	Bacteriophage	9.2e-55	41.2
WP_170825904.1\|1607705_1607879_+	hypothetical protein	NA	NA	NA	NA
WP_162489797.1\|1608244_1608364_-	hypothetical protein	NA	NA	NA	NA
WP_000469283.1\|1608889_1609108_+	hypothetical protein	NA	NA	NA	NA
WP_000341081.1\|1609832_1610261_+	hypothetical protein	A0A0P0IVP9	Acinetobacter_phage	1.3e-39	61.1
WP_000435236.1\|1610229_1610871_+	hypothetical protein	A0A0D4DBV4	Acinetobacter_phage	4.7e-118	92.0
WP_000729376.1\|1610929_1611400_+	DUF2280 domain-containing protein	A0A0D4DC15	Acinetobacter_phage	4.4e-73	89.1
WP_000102084.1\|1611389_1612817_+\|terminase	phage terminase large subunit	A0A0D4DCE6	Acinetobacter_phage	5.3e-263	92.8
WP_001286363.1\|1612813_1614265_+	DUF4055 domain-containing protein	A0A0D4DCP1	Acinetobacter_phage	1.6e-283	98.8
WP_000179750.1\|1614266_1615370_+\|capsid	minor capsid protein	A0A0D4DBL9	Acinetobacter_phage	6.6e-205	99.2
WP_000965191.1\|1615378_1615807_+	hypothetical protein	J7I4P3	Acinetobacter_phage	1.2e-72	99.3
WP_000004365.1\|1615905_1616142_+	hypothetical protein	A0A0D4DC19	Acinetobacter_phage	4.8e-36	94.9
WP_001139861.1\|1616365_1616557_+	hypothetical protein	A0A0P0IKM2	Acinetobacter_phage	1.7e-28	100.0
WP_000770049.1\|1616670_1617438_+	hypothetical protein	J7I0W4	Acinetobacter_phage	4.6e-120	100.0
WP_049594824.1\|1617465_1618422_+	hypothetical protein	A0A0D4DBM4	Acinetobacter_phage	6.0e-178	99.7
WP_000692542.1\|1618487_1619153_+	hypothetical protein	J7I4P7	Acinetobacter_phage	1.8e-109	95.0
WP_000008486.1\|1619157_1619547_+	hypothetical protein	A0A0D4DC24	Acinetobacter_phage	8.6e-67	99.2
WP_000524217.1\|1619548_1619917_+	glutamate 5-kinase	A0A0P0I456	Acinetobacter_phage	2.6e-65	100.0
WP_170825905.1\|1619895_1620333_+	hypothetical protein	J7I0W8	Acinetobacter_phage	4.7e-69	91.0
WP_000539743.1\|1620304_1620673_+	hypothetical protein	A0A0P0IDX0	Acinetobacter_phage	1.1e-55	98.1
WP_001251846.1\|1620674_1621073_+	hypothetical protein	A0A0P0IRA6	Acinetobacter_phage	5.2e-67	90.9
WP_001277696.1\|1621074_1621293_+	hypothetical protein	A0A0P0I8C2	Acinetobacter_phage	1.2e-28	94.2
WP_000749906.1\|1621401_1621923_+	SH3 domain-containing protein	NA	NA	NA	NA
WP_000064603.1\|1622019_1622373_+	hypothetical protein	A0A0P0IY61	Acinetobacter_phage	5.1e-58	95.7
WP_000002414.1\|1622372_1623551_+	hypothetical protein	A0A0D4DCQ4	Acinetobacter_phage	1.9e-101	65.1
WP_000094261.1\|1623603_1624521_+	hypothetical protein	A0A0P0IL42	Acinetobacter_phage	2.7e-167	98.4
WP_001185604.1\|1624590_1625106_+	hypothetical protein	A0A0P0J095	Acinetobacter_phage	5.3e-72	98.5
WP_000838146.1\|1625431_1625614_+	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	7.4e-29	100.0
WP_000966688.1\|1625706_1626111_+	type II toxin-antitoxin system HicB family antitoxin	A0A0D4DCG1	Acinetobacter_phage	3.9e-70	100.0
WP_074031683.1\|1626210_1626387_+	hypothetical protein	A0A0R6PIB1	Moraxella_phage	8.2e-09	57.7
WP_000523932.1\|1626395_1626719_+	DUF4236 domain-containing protein	NA	NA	NA	NA
WP_031977960.1\|1626752_1627142_+	hypothetical protein	A0A0D4DBP2	Acinetobacter_phage	7.3e-66	100.0
WP_000046542.1\|1627234_1632130_+	tape measure protein	J7I4Q7	Acinetobacter_phage	0.0e+00	98.3
WP_000277431.1\|1632179_1632578_+	hypothetical protein	A0A0P0IY66	Acinetobacter_phage	1.3e-70	95.5
WP_000368392.1\|1632577_1633084_+	DUF1833 family protein	A0A0D4DCA4	Acinetobacter_phage	2.7e-92	99.4
WP_000835157.1\|1633080_1633443_+	hypothetical protein	A0A0D4DCJ1	Acinetobacter_phage	4.4e-65	98.3
WP_049594825.1\|1633435_1636882_+	bacteriophage protein	A0A0D4DBG7	Acinetobacter_phage	0.0e+00	96.9
WP_000005350.1\|1636948_1637224_+	hypothetical protein	NA	NA	NA	NA
WP_000066825.1\|1637207_1637717_+	lysozyme	A0A0B5L5F7	Acinetobacter_phage	2.8e-49	59.2
WP_000265239.1\|1637716_1638085_+	hypothetical protein	NA	NA	NA	NA
WP_001086710.1\|1638053_1638224_+	hypothetical protein	NA	NA	NA	NA
WP_000071917.1\|1638248_1638671_-	hypothetical protein	NA	NA	NA	NA
WP_000829046.1\|1638699_1639992_-	Y-family DNA polymerase	A0A0P0I4F0	Acinetobacter_phage	8.9e-209	90.2
1642100:1642117	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2112704 : 2137396

uncultured_Caudovirales_phage(45.0%)

terminase,tail,portal,capsid,protease,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000054088.1\|2112704_2115563_-	hypothetical protein	A0A1B1P9G8	Acinetobacter_phage	2.8e-130	34.3
WP_000133292.1\|2115876_2116383_-	hypothetical protein	A0A1B1P9F1	Acinetobacter_phage	1.5e-23	37.3
WP_033502836.1\|2116375_2116858_-	hypothetical protein	NA	NA	NA	NA
WP_049594833.1\|2116865_2120453_-	hypothetical protein	J7I4Q7	Acinetobacter_phage	5.7e-72	31.6
WP_032061919.1\|2120512_2120896_-	lipoprotein	A0A1B1P9E7	Acinetobacter_phage	3.5e-36	54.4
WP_000113359.1\|2121185_2121602_-	hypothetical protein	NA	NA	NA	NA
WP_001062225.1\|2121601_2122081_-	hypothetical protein	A0A2H4JBZ0	uncultured_Caudovirales_phage	1.9e-55	67.1
WP_000598738.1\|2122150_2122525_-	DUF3168 domain-containing protein	Q9MCA6	Pseudomonas_phage	2.6e-20	44.5
WP_000426677.1\|2122524_2123010_-	HK97 gp10 family phage protein	A0A2H4JB20	uncultured_Caudovirales_phage	1.7e-27	44.8
WP_001139339.1\|2123013_2123370_-\|head	phage head closure protein	A0A1J0GUY4	Halomonas_phage	1.6e-19	50.0
WP_000631203.1\|2123371_2123659_-\|head,tail	phage head-tail connector protein	A0A2H4J711	uncultured_Caudovirales_phage	1.1e-18	47.5
WP_000666093.1\|2123655_2123832_-	hypothetical protein	NA	NA	NA	NA
WP_000137064.1\|2123879_2125052_-\|capsid	phage major capsid protein	A0A2H4JD98	uncultured_Caudovirales_phage	2.0e-103	53.0
WP_000375470.1\|2125044_2125707_-\|head,protease	HK97 family phage prohead protease	A0A2H4JAI0	uncultured_Caudovirales_phage	1.2e-73	62.7
WP_000108390.1\|2125699_2126926_-\|portal	phage portal protein	A0A2H4J6S3	uncultured_Caudovirales_phage	3.9e-182	75.9
WP_049594834.1\|2126922_2128623_-\|terminase	terminase large subunit	A0A2H4J559	uncultured_Caudovirales_phage	1.6e-197	62.2
WP_000467659.1\|2128745_2128940_-	hypothetical protein	NA	NA	NA	NA
WP_001219091.1\|2128949_2129432_-\|terminase	terminase small subunit	A0A2H4J8R0	uncultured_Caudovirales_phage	2.7e-25	46.0
WP_074031681.1\|2129782_2130073_-	hypothetical protein	NA	NA	NA	NA
WP_000503076.1\|2130050_2130314_-	hypothetical protein	NA	NA	NA	NA
WP_000093655.1\|2130306_2130489_-	hypothetical protein	NA	NA	NA	NA
WP_000433061.1\|2130478_2131009_-	hypothetical protein	A0A2H4JB76	uncultured_Caudovirales_phage	5.7e-37	44.0
WP_000856321.1\|2131024_2131423_-	hypothetical protein	T1S9H7	Salmonella_phage	1.4e-11	38.0
WP_000152595.1\|2131506_2131935_-	hypothetical protein	NA	NA	NA	NA
WP_000380484.1\|2132259_2132430_-	hypothetical protein	NA	NA	NA	NA
WP_000910071.1\|2132447_2132810_-	hypothetical protein	NA	NA	NA	NA
WP_000344040.1\|2132835_2133552_-	hypothetical protein	NA	NA	NA	NA
WP_001060708.1\|2133642_2134140_-	hypothetical protein	A0A0P0IY98	Acinetobacter_phage	1.4e-16	34.2
WP_001003589.1\|2134139_2134310_-	hypothetical protein	NA	NA	NA	NA
WP_000801885.1\|2134306_2134909_-	hypothetical protein	A0A068CBJ8	Acinetobacter_phage	4.4e-09	45.8
WP_000846967.1\|2134905_2135184_-	hypothetical protein	NA	NA	NA	NA
WP_000009564.1\|2135180_2136512_-	AAA family ATPase	A0A0P0IVX0	Acinetobacter_phage	9.7e-126	55.2
WP_049594835.1\|2136511_2137396_-	YdaU family protein	A0A2I7RGZ2	Vibrio_phage	4.6e-31	63.4

DBSCAN-SWA_4

2597353 : 2611531

Acinetobacter_phage(30.0%)

integrase

attL 2596669:2596684|attR 2614075:2614090

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2596669:2596684	attL	NA	NA	NA	NA
WP_001229156.1\|2597353_2598559_+\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A0R6PDI8	Moraxella_phage	1.6e-103	50.9
WP_001008609.1\|2598651_2599635_-	hypothetical protein	NA	NA	NA	NA
WP_001067291.1\|2599639_2600152_-	DUF4065 domain-containing protein	A0A0R6PCI9	Moraxella_phage	6.5e-22	39.5
WP_001289330.1\|2600563_2601058_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A2H4J538	uncultured_Caudovirales_phage	4.8e-46	61.5
WP_000679992.1\|2601061_2602360_+	Y-family DNA polymerase	A0A2H4JBL5	uncultured_Caudovirales_phage	6.7e-156	61.4
WP_001084012.1\|2602397_2602910_+	hypothetical protein	NA	NA	NA	NA
WP_001019729.1\|2604089_2604632_-	N-acetylmuramidase	A0A0P0IW03	Acinetobacter_phage	7.2e-96	95.0
WP_000433902.1\|2604674_2605064_-	hypothetical protein	A0A0P0IYC0	Acinetobacter_phage	2.4e-64	96.9
WP_031977643.1\|2605127_2607617_-	hypothetical protein	A0A1I9L2F3	Xanthomonas_phage	2.9e-06	22.9
WP_000792723.1\|2607617_2608040_-	C40 family peptidase	A0A0B5A615	Paracoccus_phage	5.8e-08	33.3
WP_000008889.1\|2608040_2608811_-	hypothetical protein	NA	NA	NA	NA
WP_001130838.1\|2608814_2610617_-	hypothetical protein	A0A0S1S0B7	Acinetobacter_phage	4.6e-155	56.4
WP_001248150.1\|2610673_2611531_-	DUF2163 domain-containing protein	A0A0U3DZV3	Pseudomonas_phage	1.4e-08	23.1
2614075:2614090	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2619227 : 2646101

Acinetobacter_phage(55.17%)

capsid,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000039808.1\|2619227_2620202_-	DUF2184 domain-containing protein	M4SQD1	Psychrobacter_phage	2.0e-51	37.5
WP_000240726.1\|2620207_2620678_-	hypothetical protein	NA	NA	NA	NA
WP_000160522.1\|2620691_2621894_-	DUF2213 domain-containing protein	H9C194	Pectobacterium_phage	1.9e-24	34.3
WP_000823404.1\|2622136_2622436_-	hypothetical protein	NA	NA	NA	NA
WP_001016202.1\|2622524_2623076_+	hypothetical protein	NA	NA	NA	NA
WP_000207480.1\|2623047_2623860_-\|capsid	minor capsid protein	M4T3R2	Psychrobacter_phage	2.8e-51	41.0
WP_000852317.1\|2623804_2625139_-	DUF1073 domain-containing protein	M4SN90	Psychrobacter_phage	2.0e-86	39.2
WP_001088670.1\|2625147_2626674_-\|terminase	phage terminase large subunit	A0A291LBL3	Klebsiella_phage	4.4e-90	40.6
WP_000729394.1\|2626651_2627128_-	DUF2280 domain-containing protein	A0A0P0HSK4	Acinetobacter_phage	4.5e-33	53.6
WP_049594846.1\|2627186_2627828_-	hypothetical protein	A0A0P0I449	Acinetobacter_phage	3.8e-112	87.3
WP_000348740.1\|2627796_2628225_-	hypothetical protein	A0A0P0IVP9	Acinetobacter_phage	9.3e-46	66.7
WP_000134358.1\|2628237_2628429_-	hypothetical protein	J7I0V8	Acinetobacter_phage	2.6e-24	85.7
WP_000959672.1\|2628890_2629625_-	hypothetical protein	J7HXD9	Acinetobacter_phage	8.8e-137	99.2
WP_000100167.1\|2629635_2630037_-	DUF559 domain-containing protein	A0A0P0IKL1	Acinetobacter_phage	3.4e-66	93.2
WP_001288428.1\|2630036_2630252_-	hypothetical protein	A0A0P0IY41	Acinetobacter_phage	1.0e-05	59.0
WP_000778995.1\|2630244_2630646_-	HNH endonuclease	K7P7B7	Enterobacteria_phage	1.7e-25	48.4
WP_000017854.1\|2630642_2631050_-	hypothetical protein	NA	NA	NA	NA
WP_000544517.1\|2631046_2631796_-	hypothetical protein	A0A0N7IRF0	Acinetobacter_phage	1.9e-134	96.8
WP_001110397.1\|2631788_2632739_-	YdaU family protein	A0A0P0I481	Acinetobacter_phage	1.2e-101	64.9
WP_001003656.1\|2632735_2633650_-	DNA cytosine methyltransferase	A0A2I7QZY6	Vibrio_phage	4.5e-58	65.8
WP_001194329.1\|2633646_2633934_-	hypothetical protein	NA	NA	NA	NA
WP_001289843.1\|2633984_2634485_-	hypothetical protein	NA	NA	NA	NA
WP_000210973.1\|2634539_2634788_-	helix-turn-helix domain-containing protein	A0A0R6PH31	Moraxella_phage	8.0e-18	58.6
WP_000187984.1\|2634790_2635582_+	helix-turn-helix domain-containing protein	A0A0R6PH50	Moraxella_phage	1.4e-10	52.1
WP_001101454.1\|2635809_2636250_+	hypothetical protein	A0A0N7IRE9	Acinetobacter_phage	7.0e-73	96.6
WP_000181031.1\|2636252_2636576_+	hypothetical protein	A0A0P0IKP4	Acinetobacter_phage	1.8e-54	95.3
WP_000206151.1\|2636587_2637355_+	hypothetical protein	NA	NA	NA	NA
WP_000067517.1\|2637369_2638329_+	hypothetical protein	A0A0D4DBR8	Acinetobacter_phage	1.5e-160	89.7
WP_049594847.1\|2638330_2638582_+	hypothetical protein	A0A0P0IVN4	Acinetobacter_phage	8.4e-39	98.7
WP_049594848.1\|2638582_2638990_+	hypothetical protein	A0A0P0IRG7	Acinetobacter_phage	7.5e-13	52.2
WP_000048746.1\|2638986_2639271_+	hypothetical protein	A0A0P0HSI5	Acinetobacter_phage	1.3e-43	94.7
WP_000015931.1\|2639274_2639532_+	hypothetical protein	A0A0P0J0B1	Acinetobacter_phage	8.3e-42	89.3
WP_000362184.1\|2639533_2639749_+	hypothetical protein	A0A0R6PG25	Moraxella_phage	3.7e-11	55.9
WP_001185176.1\|2639958_2641239_+	aspartate kinase	NA	NA	NA	NA
WP_000906487.1\|2641485_2641740_+	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	8.8e-12	66.7
WP_000495836.1\|2641809_2642376_-	ribonuclease HII	E3T5H8	Cafeteria_roenbergensis_virus	1.8e-25	42.4
WP_000735756.1\|2642441_2642831_-	hypothetical protein	NA	NA	NA	NA
WP_001111769.1\|2643070_2643628_+	cytochrome b	NA	NA	NA	NA
WP_001077408.1\|2643671_2644670_-	adenosine deaminase	NA	NA	NA	NA
WP_000729980.1\|2644781_2646101_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	7.8e-59	35.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP012005

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP012004

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection