CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP012076	Bordetella hinzii strain F582 chromosome, complete genome	0 crisprs	csa3,WYL,DinG,DEDDh,PrimPol	0	0	4	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1864578 : 1916024

Pseudomonas_phage(32.56%)

terminase,integrase,capsid

attL 1853221:1853238|attR 1897420:1897437

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1853221:1853238	attL	NA	NA	NA	NA
WP_029580404.1\|1864578_1865820_-\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A1B0VMI6	Pseudomonas_phage	5.2e-65	38.9
WP_029580405.1\|1865828_1866086_-	hypothetical protein	NA	NA	NA	NA
WP_029580406.1\|1866086_1866296_-	hypothetical protein	H2BDE9	Pseudomonas_virus	4.9e-08	41.7
WP_029580407.1\|1866288_1866555_-	hypothetical protein	NA	NA	NA	NA
WP_029580408.1\|1866726_1867521_-	hypothetical protein	A0A291L9X3	Bordetella_phage	1.0e-05	61.1
WP_029580409.1\|1867524_1867806_-	hypothetical protein	K4JS57	Caulobacter_phage	6.3e-11	33.3
WP_144417574.1\|1867808_1868057_-	hypothetical protein	NA	NA	NA	NA
WP_029580411.1\|1868053_1869100_-	hypothetical protein	A0A2D2W2F4	Stenotrophomonas_phage	7.1e-07	52.6
WP_029580412.1\|1869096_1869450_-	hypothetical protein	NA	NA	NA	NA
WP_029580413.1\|1869468_1871250_-	AAA family ATPase	J7HXJ7	Pseudomonas_phage	6.5e-77	36.3
WP_048940607.1\|1871259_1872420_-	recombination-associated protein RdgC	A0A218M310	Acidovorax_phage	1.1e-53	38.1
WP_029580415.1\|1872432_1873641_-	hypothetical protein	J7HXB6	Pseudomonas_phage	1.4e-70	53.8
WP_029580416.1\|1873644_1874445_-	PD-(D/E)XK nuclease family protein	J7HXJ4	Pseudomonas_phage	3.7e-56	48.9
WP_029580417.1\|1874461_1874662_-	hypothetical protein	NA	NA	NA	NA
WP_029580418.1\|1874658_1874949_-	hypothetical protein	NA	NA	NA	NA
WP_029580419.1\|1874945_1875146_-	hypothetical protein	NA	NA	NA	NA
WP_048940608.1\|1875142_1875643_-	hypothetical protein	A0A0S3UG68	Pseudomonas_phage	1.0e-35	47.0
WP_080666597.1\|1875737_1875992_-	hypothetical protein	NA	NA	NA	NA
WP_029580422.1\|1876249_1876564_-	TM2 domain-containing protein	NA	NA	NA	NA
WP_029580423.1\|1876688_1877132_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_142098760.1\|1877626_1877821_-	hypothetical protein	NA	NA	NA	NA
WP_029580424.1\|1877879_1878479_+	hypothetical protein	A0A0S2SYA8	Pseudomonas_phage	5.1e-42	50.0
WP_029580425.1\|1878475_1880404_+	DNA cytosine methyltransferase	Q9ZXI4	Pseudomonas_virus	1.4e-154	50.6
WP_029580426.1\|1880433_1880685_-	hypothetical protein	NA	NA	NA	NA
WP_029580427.1\|1880765_1881374_+	hypothetical protein	A0A218M303	Acidovorax_phage	8.0e-35	39.2
WP_142098757.1\|1881383_1881569_-	hypothetical protein	NA	NA	NA	NA
WP_029580428.1\|1881641_1882787_+	DUF1376 domain-containing protein	H2BD69	Pseudomonas_phage	7.7e-39	58.2
WP_029580429.1\|1882783_1883008_+	hypothetical protein	NA	NA	NA	NA
WP_029580430.1\|1883004_1883499_+	RusA family crossover junction endodeoxyribonuclease	A9YWY9	Burkholderia_phage	8.2e-30	52.7
WP_029580431.1\|1883491_1884118_+	hypothetical protein	NA	NA	NA	NA
WP_144417575.1\|1884167_1884755_-	hypothetical protein	NA	NA	NA	NA
WP_029580433.1\|1884913_1885705_+	DNA adenine methylase	Q5ZQW7	Pseudomonas_phage	2.0e-126	79.0
WP_029580434.1\|1885714_1886323_+	hypothetical protein	A0A1B0VRJ1	Pseudomonas_phage	1.0e-66	66.5
WP_029580435.1\|1886319_1886916_-	DUF4145 domain-containing protein	M1PSB6	Streptococcus_phage	5.8e-30	38.4
WP_029580436.1\|1887032_1887509_+	DUF2280 domain-containing protein	A0A125RNL6	Pseudomonas_phage	2.2e-35	59.9
WP_080666586.1\|1887540_1889043_+\|terminase	phage terminase large subunit	B5AX37	Iodobacteriophage	1.5e-111	45.7
WP_032959803.1\|1889042_1890323_+	DUF1073 domain-containing protein	A0A2H4N7B7	Pectobacterium_phage	1.2e-16	24.5
WP_032959802.1\|1890264_1891104_+\|capsid	minor capsid protein	I3PGT9	Xanthomonas_phage	7.7e-36	38.2
WP_029580440.1\|1891113_1892196_+	DUF2213 domain-containing protein	E5AGA6	Erwinia_phage	5.6e-55	41.0
WP_029580441.1\|1892195_1892651_+	hypothetical protein	NA	NA	NA	NA
WP_029580442.1\|1892712_1893672_+	DUF2184 domain-containing protein	A0A0N9SG07	Pseudomonas_phage	4.3e-59	39.2
WP_029580443.1\|1893671_1894052_+	hypothetical protein	NA	NA	NA	NA
WP_029580444.1\|1894054_1894429_+	DUF4054 domain-containing protein	NA	NA	NA	NA
WP_029580445.1\|1894418_1894871_+	hypothetical protein	A0A2K9V3I1	Faecalibacterium_phage	7.1e-12	34.4
WP_029580446.1\|1894874_1895243_+	hypothetical protein	NA	NA	NA	NA
WP_029580447.1\|1895416_1895941_+	hypothetical protein	NA	NA	NA	NA
WP_029580448.1\|1896004_1897363_+	DUF3383 family protein	A0A0N9SJA3	Pseudomonas_phage	3.0e-82	40.9
WP_029580449.1\|1897375_1897804_+	DUF3277 family protein	A0A2K9V3K6	Faecalibacterium_phage	4.2e-22	40.9
1897420:1897437	attR	NA	NA	NA	NA
WP_029580450.1\|1897803_1898289_+	hypothetical protein	NA	NA	NA	NA
WP_029580451.1\|1898437_1900879_+	tape measure protein	A0A0R6PD92	Moraxella_phage	8.0e-17	21.1
WP_029580452.1\|1900888_1901458_+	hypothetical protein	I3PGV3	Xanthomonas_phage	3.3e-06	26.6
WP_029580453.1\|1901454_1901787_+	hypothetical protein	NA	NA	NA	NA
WP_029580454.1\|1901773_1902694_+	hypothetical protein	E5AGC0	Erwinia_phage	3.3e-40	33.9
WP_029580455.1\|1902690_1903389_+	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	1.1e-14	33.2
WP_029580456.1\|1903388_1903757_+	hypothetical protein	E5AGC2	Erwinia_phage	3.0e-13	40.9
WP_029580457.1\|1903781_1905233_+	hypothetical protein	A0A0N9SH53	Pseudomonas_phage	4.1e-77	36.2
WP_029580458.1\|1905232_1905898_+	DUF2612 domain-containing protein	A0A0N9SSD8	Pseudomonas_phage	6.5e-30	34.6
WP_029580459.1\|1905897_1907883_+	hypothetical protein	G9BWE7	Planktothrix_phage	2.4e-11	47.8
WP_029580460.1\|1907910_1908510_+	hypothetical protein	A0A291LAV4	Bordetella_phage	1.2e-06	35.1
WP_029580461.1\|1908609_1909050_+	hypothetical protein	A0A0U5LBV3	unidentified_phage	9.6e-14	34.8
WP_029580462.1\|1909055_1909547_+	hypothetical protein	I6NSS1	Burkholderia_phage	2.0e-44	59.9
WP_080666598.1\|1909573_1910080_+	DUF2514 family protein	Q3HQV1	Burkholderia_phage	2.5e-10	42.2
WP_144417576.1\|1910055_1910553_-	hypothetical protein	NA	NA	NA	NA
WP_029580464.1\|1910552_1910969_-	antitoxin	A0A0R6PH90	Moraxella_phage	4.6e-34	57.5
WP_080666588.1\|1911027_1911204_-	type II toxin-antitoxin system HicA family toxin	A0A0R6PGU2	Moraxella_phage	1.3e-09	60.0
WP_029580465.1\|1911592_1912285_-	SOS response-associated peptidase family protein	A4JX27	Burkholderia_virus	1.8e-14	34.7
WP_144417577.1\|1912598_1913555_+	hypothetical protein	NA	NA	NA	NA
WP_029580467.1\|1913741_1914230_-	membrane protein	NA	NA	NA	NA
WP_029580468.1\|1914368_1916024_-	PAS domain-containing methyl-accepting chemotaxis protein	A0A1B0V854	Salmonella_phage	5.7e-35	48.9

DBSCAN-SWA_2

1967226 : 1974976

Lake_Baikal_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029580519.1\|1967226_1967433_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	7.4e-17	62.1
WP_029580520.1\|1967486_1968026_-	TIGR00645 family protein	K4K6D8	Caulobacter_phage	1.1e-22	33.7
WP_029580521.1\|1968231_1969542_+	trigger factor	NA	NA	NA	NA
WP_029580522.1\|1969544_1970198_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	1.5e-55	56.4
WP_029580523.1\|1970302_1971601_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	8.3e-130	54.3
WP_029580524.1\|1971766_1974196_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	2.0e-222	52.4
WP_029580525.1\|1974322_1974976_-	transcriptional repressor LexA	A0A2H4JG58	uncultured_Caudovirales_phage	1.9e-10	50.7

DBSCAN-SWA_3

3221092 : 3253367

Acidithiobacillus_phage(30.77%)

integrase,protease,portal,tail,head,capsid,terminase

attL 3221041:3221062|attR 3232195:3232216

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3221041:3221062	attL	NA	NA	NA	NA
WP_029577241.1\|3221092_3222304_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	1.1e-120	56.2
WP_144417582.1\|3222385_3222760_+	hypothetical protein	NA	NA	NA	NA
WP_029577239.1\|3222857_3223880_+	hypothetical protein	NA	NA	NA	NA
WP_029577238.1\|3223986_3224193_+	AlpA family transcriptional regulator	B7SYF9	Stenotrophomonas_phage	3.9e-10	50.0
WP_032959784.1\|3224206_3224632_+	DNA primase	A0A2H5BLM3	Streptomyces_phage	6.4e-07	50.0
WP_029577236.1\|3224621_3225773_+	AAA family ATPase	NA	NA	NA	NA
WP_029577235.1\|3226031_3227240_+\|capsid	phage major capsid protein	G8EXZ9	Synechococcus_phage	5.0e-36	32.6
WP_029577234.1\|3227255_3227801_+\|head,protease	HK97 family phage prohead protease	B4UTP2	Rhizobium_phage	5.0e-28	49.0
WP_029577233.1\|3227794_3229009_+\|portal	phage portal protein	A0A2K5B287	Erysipelothrix_phage	4.0e-70	39.8
WP_144417589.1\|3229041_3229443_+	HNH endonuclease	NA	NA	NA	NA
WP_029577231.1\|3229493_3229952_+	hypothetical protein	NA	NA	NA	NA
WP_029577230.1\|3229948_3231445_+\|terminase	terminase	K7PLY2	Enterobacterial_phage	1.6e-177	62.7
WP_029577229.1\|3231583_3231919_+\|head	phage head closure protein	A0A1J0GUY4	Halomonas_phage	1.4e-12	39.1
WP_029577228.1\|3231915_3232194_+\|head,tail	phage gp6-like head-tail connector protein	B5WZS4	Pseudomonas_phage	8.8e-05	33.3
WP_029577227.1\|3232642_3232921_+	DUF1778 domain-containing protein	NA	NA	NA	NA
3232195:3232216	attR	NA	NA	NA	NA
WP_029577226.1\|3232917_3233421_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_029577225.1\|3233436_3233868_-	hypothetical protein	NA	NA	NA	NA
WP_029577224.1\|3233864_3235220_-	recombinase family protein	K4ICM1	Acidithiobacillus_phage	1.0e-143	57.9
WP_029577223.1\|3235392_3236199_+	hypothetical protein	NA	NA	NA	NA
WP_029577222.1\|3236207_3237164_+	hypothetical protein	NA	NA	NA	NA
WP_029577221.1\|3237229_3237454_+	DUF2188 domain-containing protein	E8ZD70	Streptococcus_phage	2.4e-13	56.8
WP_029577220.1\|3237642_3237855_+	helix-turn-helix domain-containing protein	A0A0K0N7A4	Gordonia_phage	3.0e-05	52.4
WP_029577219.1\|3237851_3238322_+	hypothetical protein	K4HZ96	Acidithiobacillus_phage	2.7e-30	44.3
WP_029577218.1\|3238327_3238609_+	hypothetical protein	NA	NA	NA	NA
WP_029577217.1\|3238605_3239463_+	ATP-binding protein	K4HZX9	Acidithiobacillus_phage	2.3e-104	68.4
WP_029577216.1\|3239474_3240071_+	hypothetical protein	K4ICM8	Acidithiobacillus_phage	2.3e-63	60.8
WP_029577215.1\|3240085_3241762_+	DEAD/DEAH box helicase	A0A1B1IW48	uncultured_Mediterranean_phage	9.9e-35	29.2
WP_029577214.1\|3241758_3242115_+	hypothetical protein	NA	NA	NA	NA
WP_029577213.1\|3242125_3242881_+	hypothetical protein	K4HZA0	Acidithiobacillus_phage	5.2e-84	62.3
WP_029577212.1\|3242880_3245067_+	AAA family ATPase	A0A1B2LRQ1	Wolbachia_phage	3.5e-104	33.2
WP_032959795.1\|3245384_3245837_+	phage related protein	K4ICN3	Acidithiobacillus_phage	7.7e-59	73.3
WP_029577210.1\|3246195_3246600_+	hypothetical protein	NA	NA	NA	NA
WP_032959783.1\|3247732_3248998_+	site-specific DNA-methyltransferase	K4HZA5	Acidithiobacillus_phage	1.8e-209	83.5
WP_029577208.1\|3248961_3249330_-	hypothetical protein	K4ICP1	Acidithiobacillus_phage	5.5e-47	72.5
WP_029577207.1\|3249397_3249616_-	hypothetical protein	NA	NA	NA	NA
WP_029577206.1\|3249711_3250209_-	DUF3489 domain-containing protein	A0A2H4JE21	uncultured_Caudovirales_phage	8.0e-33	71.7
WP_029577205.1\|3250286_3250475_-	hypothetical protein	A0A1X9I6B9	Streptococcus_phage	1.3e-07	50.0
WP_029577204.1\|3250652_3251183_+	hypothetical protein	A0A2H4JCL4	uncultured_Caudovirales_phage	1.5e-69	80.7
WP_029577203.1\|3251182_3253150_+\|terminase	phage terminase large subunit family protein	A0A2H4JIC6	uncultured_Caudovirales_phage	0.0e+00	87.1
WP_029577202.1\|3253160_3253367_+	hypothetical protein	A0A2H4JCJ9	uncultured_Caudovirales_phage	3.8e-21	77.9

DBSCAN-SWA_4

3274985 : 3288051

Acidithiobacillus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029577153.1\|3274985_3276020_-\|transposase	IS630 family transposase	S5VXX4	Leptospira_phage	3.3e-41	32.0
WP_029578560.1\|3276714_3276945_+	hypothetical protein	NA	NA	NA	NA
WP_029578561.1\|3276948_3277329_+	type II toxin-antitoxin system death-on-curing family toxin	A0A1B3AYM0	Gordonia_phage	1.0e-08	54.7
WP_155272811.1\|3277333_3277480_+	hypothetical protein	NA	NA	NA	NA
WP_029578562.1\|3277647_3278100_-	hypothetical protein	K4HZX2	Acidithiobacillus_phage	1.4e-31	53.2
WP_029578563.1\|3278096_3279437_-	recombinase family protein	K4ICM1	Acidithiobacillus_phage	1.8e-132	55.8
WP_029578564.1\|3279433_3279895_-	DUF2924 domain-containing protein	K4I3X1	Acidithiobacillus_phage	9.0e-39	56.8
WP_144417583.1\|3280084_3280459_-	hypothetical protein	NA	NA	NA	NA
WP_048940635.1\|3281112_3281337_+	hypothetical protein	A0A221SAQ3	Ralstonia_phage	7.0e-05	39.3
WP_029578567.1\|3281333_3281579_+	hypothetical protein	NA	NA	NA	NA
WP_029578568.1\|3281575_3283723_+	AAA family ATPase	Q9JMN6	Wolbachia_phage	4.4e-104	41.8
WP_144417584.1\|3284352_3284841_-	DUF3489 domain-containing protein	NA	NA	NA	NA
WP_029578570.1\|3284849_3285053_-	hypothetical protein	NA	NA	NA	NA
WP_029578571.1\|3285233_3285437_+	helix-turn-helix domain-containing protein	A0A1B1IUF9	uncultured_Mediterranean_phage	4.0e-15	51.7
WP_029578572.1\|3285516_3288051_+	site-specific DNA-methyltransferase	Q1MVP0	Enterobacteria_phage	2.4e-24	26.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage