CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT883154	Salmonella enterica subsp. enterica serovar Typhi strain ERL12148 genome assembly, plasmid: 2	0 crisprs	DEDDh	0	0	2	0
NZ_LT883153	Salmonella enterica subsp. enterica serovar Typhi strain ERL12148 genome assembly, chromosome: 1	2 crisprs	PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,DEDDh,cas3,DinG,c2c9_V-U4	0	3	14	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

488 : 89920

107

Salmonella_phage(91.84%)

terminase,integrase,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000064174.1\|488_812_-	hypothetical protein	J9Q6E7	Salmonella_phage	2.7e-50	97.2
WP_044790583.1\|926_3479_-\|tail	tail fiber domain-containing protein	A0A0A0YQM3	Citrobacter_virus	1.4e-152	52.5
WP_011011097.1\|3561_7950_-	DUF1983 domain-containing protein	J9Q713	Salmonella_phage	0.0e+00	86.7
WP_001293197.1\|7964_8552_-\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	1.1e-102	92.3
WP_000528167.1\|8539_9337_-\|tail	tail protein	J9Q7R4	Salmonella_phage	1.2e-155	95.8
WP_072075016.1\|9329_10061_-\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	3.3e-136	99.1
WP_000440566.1\|10117_10453_-\|tail	phage tail protein	J9Q6E1	Salmonella_phage	5.7e-59	97.3
WP_044790579.1\|10494_15078_-	tape measure protein	J9Q712	Salmonella_phage	0.0e+00	92.9
WP_002228782.1\|15085_15355_-	hypothetical protein	J9Q7F7	Salmonella_phage	8.4e-37	100.0
WP_000163862.1\|15435_15753_-	hypothetical protein	J9Q7R3	Salmonella_phage	6.0e-50	98.1
WP_000072376.1\|15812_16559_-	Ig domain-containing protein	J9Q7Y4	Salmonella_phage	7.8e-125	96.8
WP_000469441.1\|16633_17017_-	hypothetical protein	J9Q6D8	Salmonella_phage	1.7e-67	100.0
WP_000523626.1\|17018_17492_-	hypothetical protein	J9Q711	Salmonella_phage	2.3e-82	100.0
WP_001027662.1\|17482_17827_-	hypothetical protein	J9Q7F6	Salmonella_phage	1.9e-57	100.0
WP_000057119.1\|17924_18758_-	hypothetical protein	J9Q7R2	Salmonella_phage	2.6e-153	100.0
WP_000801184.1\|18757_19192_-	hypothetical protein	J9Q7Y3	Salmonella_phage	2.1e-74	100.0
WP_001115046.1\|19235_20159_-	Ig domain-containing protein	J9Q6D6	Salmonella_phage	3.3e-157	100.0
WP_001130336.1\|20233_21109_-	hypothetical protein	J9Q710	Salmonella_phage	3.8e-163	100.0
WP_001055287.1\|21135_22032_-	hypothetical protein	J9Q7F4	Salmonella_phage	5.7e-146	96.6
WP_000423989.1\|22054_23629_-	hypothetical protein	J9Q7R1	Salmonella_phage	3.2e-301	99.0
WP_001007302.1\|23662_24919_-\|terminase	terminase	J9Q7Y2	Salmonella_phage	5.3e-251	99.8
WP_000215412.1\|24921_25563_-	DNA-binding protein	J9Q6D4	Salmonella_phage	1.8e-109	99.5
WP_000176291.1\|25758_26025_-	hypothetical protein	J9Q757	Salmonella_phage	1.3e-42	100.0
WP_011011099.1\|26034_26934_-	hypothetical protein	J9Q7I6	Salmonella_phage	4.0e-168	99.3
WP_001113021.1\|26930_27185_-	hypothetical protein	J9Q7U0	Salmonella_phage	4.1e-41	98.8
WP_000049963.1\|27177_27816_-	ATP-binding cassette domain-containing protein	J9Q807	Salmonella_phage	5.5e-111	99.1
WP_000164561.1\|27812_28481_-	chromosome partitioning protein ParB	J9Q6L1	Salmonella_phage	1.1e-114	99.5
WP_011011100.1\|28480_29179_-	chromosome partitioning protein ParB	J9Q756	Salmonella_phage	1.9e-125	99.6
WP_000218382.1\|29243_30803_+	DEAD/DEAH box helicase	J9Q7I4	Salmonella_phage	5.7e-295	99.4
WP_001291547.1\|30805_31084_+	hypothetical protein	J9Q7T9	Salmonella_phage	3.4e-41	98.9
WP_000683475.1\|31143_31566_+	hypothetical protein	J9Q806	Salmonella_phage	8.2e-63	85.7
WP_000182009.1\|31570_32098_+	transcriptional regulator	J9Q6L0	Salmonella_phage	4.1e-80	96.6
WP_011011101.1\|32101_32410_+	periplasmic protein	NA	NA	NA	NA
WP_000072873.1\|32732_33383_+	hypothetical protein	J9Q754	Salmonella_phage	1.4e-114	100.0
WP_000234274.1\|33467_33695_+	hypothetical protein	NA	NA	NA	NA
WP_001009195.1\|34326_34809_-	hypothetical protein	J9Q805	Salmonella_phage	5.5e-87	96.9
WP_024134090.1\|34821_35055_-	hypothetical protein	NA	NA	NA	NA
WP_011011102.1\|35014_35302_-	hypothetical protein	J9Q753	Salmonella_phage	1.5e-47	94.6
WP_000218787.1\|35422_35815_-	hypothetical protein	J9Q7I1	Salmonella_phage	1.7e-41	65.4
WP_000786235.1\|35943_36255_-	hypothetical protein	J9Q7T7	Salmonella_phage	1.1e-45	92.2
WP_000559556.1\|36331_36646_-	hypothetical protein	NA	NA	NA	NA
WP_000594283.1\|36740_36959_-	hypothetical protein	J9Q804	Salmonella_phage	6.4e-35	98.6
WP_000276519.1\|36969_37185_-	hypothetical protein	J9Q6K7	Salmonella_phage	4.5e-33	95.8
WP_011011103.1\|37327_37573_+	hypothetical protein	J9Q751	Salmonella_phage	5.8e-37	92.5
WP_000132517.1\|39009_40200_-	hypothetical protein	J9Q803	Salmonella_phage	5.4e-120	54.6
WP_000916329.1\|40209_40527_-	hypothetical protein	J9Q750	Salmonella_phage	8.1e-47	80.0
WP_011011104.1\|40611_40893_-	hypothetical protein	J9Q7T5	Salmonella_phage	3.2e-31	71.6
WP_000860613.1\|41066_41270_+	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	1.5e-30	95.5
WP_000218758.1\|41330_41618_-	hypothetical protein	A5VWB2	Enterobacteria_phage	9.9e-28	58.8
WP_011011105.1\|41614_41926_-	hypothetical protein	A0A1B5FPC7	Escherichia_phage	3.0e-14	56.9
WP_000861921.1\|41934_42477_-	hypothetical protein	J9Q748	Salmonella_phage	2.6e-93	93.1
WP_000086990.1\|42473_43115_-	HD domain-containing protein	J9Q7H7	Salmonella_phage	9.7e-116	100.0
WP_000766011.1\|43206_43578_-	hypothetical protein	J9Q7T4	Salmonella_phage	3.2e-63	100.0
WP_001291673.1\|43858_44548_-	hypothetical protein	J9Q6K2	Salmonella_phage	6.1e-124	98.3
WP_011011107.1\|44606_46310_-	DUF4942 domain-containing protein	J9Q747	Salmonella_phage	0.0e+00	98.9
WP_000333240.1\|46433_47006_-	hypothetical protein	J9Q7H6	Salmonella_phage	8.2e-98	98.9
WP_000462606.1\|47114_47957_-	hypothetical protein	J9Q7T3	Salmonella_phage	2.1e-70	71.1
WP_000872126.1\|48065_48254_-	hypothetical protein	J9Q800	Salmonella_phage	1.2e-26	100.0
WP_024134091.1\|48263_48758_-	hypothetical protein	J9Q6J9	Salmonella_phage	1.9e-79	96.3
WP_011011108.1\|48900_49509_-	ribonuclease HI	J9Q745	Salmonella_phage	2.2e-117	99.5
WP_000262979.1\|50094_50325_-	hypothetical protein	J9Q7H5	Salmonella_phage	2.1e-36	100.0
WP_000559567.1\|50527_51121_-	phage N-6-adenine-methyltransferase	J9Q7T2	Salmonella_phage	4.6e-112	99.5
WP_011011109.1\|51306_52233_-	hypothetical protein	J9Q7Z9	Salmonella_phage	4.1e-107	85.4
WP_000208226.1\|52277_52835_-	3'-5' exonuclease	J9Q6J8	Salmonella_phage	7.0e-102	99.5
WP_000564632.1\|52844_53264_-	hypothetical protein	J9Q743	Salmonella_phage	2.9e-68	98.6
WP_000386471.1\|53327_53972_-	AAA family ATPase	J9Q7H4	Salmonella_phage	5.2e-117	100.0
WP_000781812.1\|53971_54448_-	dihydrofolate reductase	J9Q7T1	Salmonella_phage	1.4e-90	100.0
WP_006812548.1\|54444_54858_-	hypothetical protein	J9Q7Z8	Salmonella_phage	4.7e-71	97.8
WP_011011110.1\|54859_55975_-	thymidylate synthase	J9Q6J6	Salmonella_phage	7.6e-217	98.1
WP_000673231.1\|56090_57020_-	hypothetical protein	J9Q742	Salmonella_phage	3.8e-161	99.0
WP_011011111.1\|57102_58245_-	ribonucleotide-diphosphate reductase subunit beta	J9Q7H3	Salmonella_phage	2.4e-218	99.5
WP_000623686.1\|58352_60668_-	ribonucleoside-diphosphate reductase subunit alpha	J9Q7T0	Salmonella_phage	0.0e+00	99.7
WP_000047571.1\|60745_61315_-	hypothetical protein	J9Q7Z7	Salmonella_phage	1.7e-103	99.5
WP_000009516.1\|61327_62074_-	hypothetical protein	J9Q6J5	Salmonella_phage	4.4e-136	98.0
WP_000670362.1\|62063_63980_-	AAA family ATPase	J9Q741	Salmonella_phage	0.0e+00	98.6
WP_000107766.1\|63976_64213_-	hypothetical protein	J9Q7H1	Salmonella_phage	1.1e-29	98.4
WP_000174806.1\|64209_65295_-	exonuclease SbcCD subunit D	J9Q7S9	Salmonella_phage	2.7e-206	98.9
WP_000832167.1\|65523_66027_+	hypothetical protein	J9Q7Z6	Salmonella_phage	5.5e-90	98.2
WP_001288958.1\|66058_66553_-	GNAT family N-acetyltransferase	J9Q6J3	Salmonella_phage	2.3e-88	97.6
WP_000364575.1\|66628_67273_-	hypothetical protein	J9Q739	Salmonella_phage	2.4e-122	98.1
WP_001293470.1\|68017_69073_+	replication protein RepA	J9Q7H0	Salmonella_phage	1.5e-185	98.0
WP_154080930.1\|69278_69419_-	hypothetical protein	NA	NA	NA	NA
WP_011011087.1\|69601_69805_-	hypothetical protein	J9Q7S8	Salmonella_phage	4.0e-31	94.3
WP_000859650.1\|69804_70110_-	hypothetical protein	J9Q7Z5	Salmonella_phage	4.9e-33	90.8
WP_000699340.1\|70150_70426_-	hypothetical protein	J9Q738	Salmonella_phage	5.9e-46	96.7
WP_000737807.1\|70494_70905_-	hypothetical protein	J9Q7G9	Salmonella_phage	1.4e-75	97.1
WP_000801005.1\|70888_71260_-	DUF2591 domain-containing protein	J9Q7S7	Salmonella_phage	3.0e-69	98.4
WP_000715582.1\|71422_72265_-	hypothetical protein	J9Q7Z4	Salmonella_phage	2.3e-125	97.1
WP_000589750.1\|72268_72469_-	hypothetical protein	J9Q6J0	Salmonella_phage	9.3e-25	93.9
WP_001051805.1\|72560_73637_-	recombinase	J9Q736	Salmonella_phage	5.5e-204	99.7
WP_000920226.1\|73639_73906_-	hypothetical protein	J9Q7G8	Salmonella_phage	1.6e-40	100.0
WP_001108398.1\|73905_74850_-	exonuclease	J9Q7S6	Salmonella_phage	6.8e-182	99.4
WP_000045710.1\|74910_75939_-	hypothetical protein	J9Q7Z3	Salmonella_phage	1.1e-164	98.8
WP_000102109.1\|76058_76490_-	hypothetical protein	J9Q6I8	Salmonella_phage	4.0e-73	100.0
WP_000459729.1\|76735_77326_+	hypothetical protein	NA	NA	NA	NA
WP_001031298.1\|77419_77863_-	hypothetical protein	J9Q7S4	Salmonella_phage	3.0e-71	97.9
WP_000645855.1\|77859_81378_-	DNA polymerase III subunit alpha	J9Q7Z2	Salmonella_phage	0.0e+00	99.1
WP_000127343.1\|81558_82794_-	AAA domain-containing protein	J9Q733	Salmonella_phage	1.8e-238	99.5
WP_044790587.1\|82890_85248_-	porphyrin biosynthesis protein	J9Q7G6	Salmonella_phage	0.0e+00	90.7
WP_000790461.1\|85357_85570_-	hypothetical protein	NA	NA	NA	NA
WP_000224608.1\|85831_86218_+	transcriptional regulator	NA	NA	NA	NA
WP_000798892.1\|86209_87316_-\|integrase	site-specific integrase	A0A1P8DTG6	Proteus_phage	2.1e-25	32.2
WP_001117719.1\|87576_88068_+	hypothetical protein	NA	NA	NA	NA
WP_000869626.1\|88232_88478_-	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	2.1e-10	41.6
WP_000131231.1\|88477_88858_-	hypothetical protein	Q716B1	Shigella_phage	6.7e-40	67.2
WP_000159906.1\|88873_89077_-	hypothetical protein	A0A0B6VT64	Edwardsiella_phage	4.4e-06	49.2
WP_011011090.1\|89086_89920_-	phosphate starvation-inducible protein PhoH	W8D063	Erwinia_phage	2.4e-90	65.1

DBSCAN-SWA_2

93738 : 106420

Salmonella_phage(88.24%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000067984.1\|93738_94044_-	hypothetical protein	J9Q7S1	Salmonella_phage	9.2e-48	98.0
WP_044790586.1\|94040_94193_-	hypothetical protein	J9Q7Z1	Salmonella_phage	7.6e-19	96.0
WP_011011092.1\|94192_94399_-	hypothetical protein	J9Q6I3	Salmonella_phage	8.1e-32	98.5
WP_000901956.1\|94388_94565_-	hypothetical protein	J9Q729	Salmonella_phage	2.6e-23	96.6
WP_000413053.1\|94564_95887_-	DNA ligase	J9Q7G5	Salmonella_phage	5.8e-256	98.4
WP_011011093.1\|95921_96179_-	hypothetical protein	J9Q7R9	Salmonella_phage	4.9e-34	92.9
WP_000642525.1\|96479_97274_-	hypothetical protein	J9Q7Z0	Salmonella_phage	4.9e-141	96.2
WP_000209842.1\|97457_98510_+	hypothetical protein	J9Q6F5	Salmonella_phage	1.9e-92	56.7
WP_011011094.1\|98511_99723_-	hypothetical protein	J9Q720	Salmonella_phage	6.6e-214	96.5
WP_011011095.1\|99785_101126_-	AAA family ATPase	J9Q7G4	Salmonella_phage	3.8e-247	99.6
WP_000078184.1\|101186_101912_-	hypothetical protein	J9Q7R8	Salmonella_phage	2.4e-139	98.3
WP_001238819.1\|102189_103245_+	hypothetical protein	A0A2I7RNF6	Vibrio_phage	5.1e-61	42.6
WP_000966077.1\|103314_104070_-	DUF2971 domain-containing protein	J9Q7Y9	Salmonella_phage	3.2e-57	43.0
WP_000062815.1\|104118_104478_-	hypothetical protein	J9Q7G3	Salmonella_phage	2.3e-45	100.0
WP_000161333.1\|104477_105143_-	AAA family ATPase	J9Q7R7	Salmonella_phage	8.0e-113	95.0
WP_001287064.1\|105473_106025_+	hypothetical protein	A0A2H4J5U3	uncultured_Caudovirales_phage	7.8e-29	39.8
WP_011011096.1\|106075_106420_-	hypothetical protein	J9Q7G2	Salmonella_phage	5.9e-27	83.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_LT883153

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_LT883153_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT883153_1

597972-598072

Orphan

Consensus_repeat	Method
GCTTCAGTGGCGAACGTCGTGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT883153_1

>merge|NZ_LT883153|1|597972-598072|CRISPRCasFinder
GCTTCAGTGGCGAACGTCGTGAAGGCGGTCGTAATTTCAGCGGCGAACGTCGTGAAGGTGGTCGTGGTGATGGTCGTCGCTTCAGCGGCGAACGTCGTGAA

>NZ_LT883153|1|1|597972-598072|CRISPRCasFinder
GCTTCAGTGGCGAACGTCGTGAA	GGCGGTCGTAATTTCAGCGGCGAACGTCGTGAAGGTGGTCGTGGTGATGGTCGTC
GCTTCAGCGGCGAACGTCGTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT883153.1\|WP_000224390.1\|598285_599530_+\|tryptophan-permease	unknown	unknown	gnl\|CDD\|182492
NZ_LT883153.1\|WP_000380404.1\|604267_604711_+\|YhbP-family-protein	unknown	unknown	gnl\|CDD\|235127
NZ_LT883153.1\|WP_010723222.1\|596169_596250_+\|protein-YrbN	unknown	unknown	gnl\|CDD\|380282
NZ_LT883153.1\|WP_001638995.1\|605339_605975_+\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|187560
NZ_LT883153.1\|WP_000421309.1\|601692_602688_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_LT883153.1\|WP_000802069.1\|595179_596064_+\|lipoprotein-NlpI	unknown	unknown	gnl\|CDD\|236875
NZ_LT883153.1\|WP_000130428.1\|599620_600628_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182505
NZ_LT883153.1\|WP_001031036.1\|586501_588004_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|236410
NZ_LT883153.1\|WP_011233187.1\|584050_585460_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
NZ_LT883153.1\|WP_001040208.1\|590927_591329_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_LT883153.1\|WP_000928379.1\|603912_604230_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|178979
NZ_LT883153.1\|WP_000105461.1\|586021_586474_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NZ_LT883153.1\|WP_000131175.1\|588028_590707_+\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NZ_LT883153.1\|WP_000059465.1\|592423_592693_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_LT883153.1\|WP_010989243.1\|592934_595070_+\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NZ_LT883153.1\|WP_077905076.1\|600805_601702_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
NZ_LT883153.1\|WP_000037599.1\|604690_605209_-\|protein/nucleic-acid-deglycase	unknown	unknown	gnl\|CDD\|153228
NZ_LT883153.1\|WP_000884720.1\|602904_603429_+\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696
NZ_LT883153.1\|WP_000908562.1\|603422_603926_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_LT883153.1\|WP_000089682.1\|591328_592273_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235333

Protein	Function_ID	Function_description	E-value
NZ_LT883153.1\|WP_000224390.1\|598285_599530_+\|tryptophan-permease	gnl\|CDD\|182492	PRK10483, PRK10483, tryptophan permease; Provisional.	0
NZ_LT883153.1\|WP_000380404.1\|604267_604711_+\|YhbP-family-protein	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	1.36854e-99
NZ_LT883153.1\|WP_010723222.1\|596169_596250_+\|protein-YrbN	gnl\|CDD\|380282	NF033440, small_YrbN, protein YrbN. YrbN, a small protein of only 26 amino acids, is found in at least these genera: Escherichia, Salmonella, Enterobacter, Klebsiella, and Yersinia. It is known to be expressed in E. coli.	1.66225e-08
NZ_LT883153.1\|WP_001638995.1\|605339_605975_+\|NAD(P)H-binding-protein	gnl\|CDD\|187560	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs. Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	3.31829e-69
NZ_LT883153.1\|WP_000421309.1\|601692_602688_-\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	3.77757e-116
NZ_LT883153.1\|WP_000802069.1\|595179_596064_+\|lipoprotein-NlpI	gnl\|CDD\|236875	PRK11189, PRK11189, lipoprotein NlpI; Provisional.	0
NZ_LT883153.1\|WP_000130428.1\|599620_600628_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|182505	PRK10508, PRK10508, luciferase-like monooxygenase.	0
NZ_LT883153.1\|WP_001031036.1\|586501_588004_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|236410	PRK09202, nusA, transcription elongation factor NusA; Validated.	0
NZ_LT883153.1\|WP_011233187.1\|584050_585460_-\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NZ_LT883153.1\|WP_001040208.1\|590927_591329_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	2.271e-52
NZ_LT883153.1\|WP_000928379.1\|603912_604230_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	4.3214e-44
NZ_LT883153.1\|WP_000105461.1\|586021_586474_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	4.39218e-79
NZ_LT883153.1\|WP_000131175.1\|588028_590707_+\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NZ_LT883153.1\|WP_000059465.1\|592423_592693_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	7.70279e-54
NZ_LT883153.1\|WP_010989243.1\|592934_595070_+\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NZ_LT883153.1\|WP_077905076.1\|600805_601702_-\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
NZ_LT883153.1\|WP_000037599.1\|604690_605209_-\|protein/nucleic-acid-deglycase	gnl\|CDD\|153228	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.	5.12939e-86
NZ_LT883153.1\|WP_000884720.1\|602904_603429_+\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	1.07362e-84
NZ_LT883153.1\|WP_000908562.1\|603422_603926_+\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	7.2703e-63
NZ_LT883153.1\|WP_000089682.1\|591328_592273_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235333	PRK05033, truB, tRNA pseudouridine synthase B; Provisional.	0

>NZ_LT883153.1|WP_010723222.1|596169_596250_+|protein-YrbN
MKIADQFHDELCRLAAINFEAHVLHG
>NZ_LT883153.1|WP_000802069.1|595179_596064_+|lipoprotein-NlpI
MKPFLRWCFVATALTLAGCSNSAWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPYRSLWLYLVEQKLNEKQAKEALKARFEKSDKEQWGWNIVEFYLGDISEATLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQQ
>NZ_LT883153.1|WP_010989243.1|592934_595070_+|polyribonucleotide-nucleotidyltransferase
MLNPIVREFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKYAIRRIEEITAEIEVGRIYNSKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAAAPEAPASEQAE
>NZ_LT883153.1|WP_000059465.1|592423_592693_+|30S-ribosomal-protein-S15
MSLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR
>NZ_LT883153.1|WP_000089682.1|591328_592273_+|tRNA-pseudouridine(55)-synthase-TruB
MSRPRRRGRDIHGVLLLDKPQGMSSNDVLQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVQERPVTFSAEQLASALETFRGDIEQIPSMYSALKYQGRKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEVHCSKGTYIRTIIDDLGEKLGCGAHVTYLRRLTVSKYPVDRMVTLEHLQTLVAQAEQQGVPAAQLLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTTGAPLKGLVRVTEGEDDKFIGMGEIDDEGRVAPRRLVVEYPA
>NZ_LT883153.1|WP_001040208.1|590927_591329_+|30S-ribosome-binding-factor-RbfA
MAKEFGRPQRVAQEMQKEIALILQREIKDPRVGMMTTVSGVEMSRDLAYAKVFVTFLNDQDEAAVKNGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGMRMSNLVTNVVKHDEERRVNPDDSKED
>NZ_LT883153.1|WP_000131175.1|588028_590707_+|translation-initiation-factor-IF-2
MTDLTLKALAAERQVSVDRLVQQFADAGIRKSADDSVSAQEKQTLLAHLNREAVSGPDKLTLQRKTRSTLNIPGTGGKSKSVQIEVRKKRTFVKRDPQEAERLAAEEQAQREAEEQARREAEEQAKREAQQKAEREAAEQAKREAAEKAKREAAEKDKVSNQQTDDMTKTAQAEKARRENEAAELKRKAEEEARRKLEEEARRVAEEARRMAEENKWTATPEPVEDTSDYHVTTSQHARQAEDENDREVEGGRGRGRNAKAARPAKKGKHAESKADREEARAAVRGGKGGKRKGSSLQQGFQKPAQAVNRDVVIGETITVGELANKMAVKGSQVIKAMMKLGAMATINQVIDQETAQLVAEEMGHKVILRRENELEEAVMSDRDTGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETDNGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAGVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFVNMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASARKVIESESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGTIKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRVGDMIEVFEIIEIQRTIA
>NZ_LT883153.1|WP_001031036.1|586501_588004_+|transcription-termination/antitermination-protein-NusA
MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPGDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVHLASQLSGWELNVMTVDDLQAKHQAEAHAAIEIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALATLAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIEGLTDEKAGELIMAARNICWFGDEA
>NZ_LT883153.1|WP_000105461.1|586021_586474_+|ribosome-maturation-factor-RimP
MSTLEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPISVAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGIIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF
>NZ_LT883153.1|WP_011233187.1|584050_585460_-|argininosuccinate-synthase
MHKNALKQKPISLSVNQAGFYSMTTILKHLPAGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVEKAYSTDSNMLGATHEAKDLEFLNSSVKIVNPIMGVKFWDESVKIPAEEVTVRFEQGHPVALNGKTFSDDVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLLTGIHNEDTIEQYHSHGRQLGKLLYQGRWFDSQALMLRDGLQRWVASQITGEVTLELRRGNDYSILNTVSDNLTYKAERLTMEKGESVFSPDDRIGQLTMRNLDITDTREKLFGYAKAGLLTASSATGLPQVENLENKAK
>NZ_LT883153.1|WP_000224390.1|598285_599530_+|tryptophan-permease
MATLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALVFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFAFALLVAFVVWLSTKAVSRMTAIVLGAKVITFFLTFGSLLGHVQPTTLFNVAESHASYTPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPRTIVKCLIYGTLLALALYSVWLLGTMGNIPRPEFIGIAQKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDSAMGRFKTALLTFLPPMIGGLLYPNGFLYAIGYAGLAATIWAAIVPALLARKSRERFGSPKFRVWGGKPMIALILVFGVGNAVIHILSSFNLLPVYQ
>NZ_LT883153.1|WP_000130428.1|599620_600628_-|LLM-class-flavin-dependent-oxidoreductase
MTDKTIPFSVLDLAPIPEGSSAKEAFTHSLDLARLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQPTMRALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPGYGEKIPLWLLGSSLYSAQLAAQLGLPFAFASHFTPDMLFQALHLYRTQFKPSARLEKPYAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIENMETFWSPSEQYGVQQALSMSLVGDKAKVRHGLVSILRETQADEIMVNGQIFDHQARLHSFDLAMDVKQELLG
>NZ_LT883153.1|WP_077905076.1|600805_601702_-|U32-family-peptidase
MAVRGAMKYSLGPVLYYWPKETLEDFYQQAAKSSADIIYLGEAVCSKRRATKVGDWLEMAKSLAASGKQVALSTLALVQASSELSELKRYVDNGDFLLEASDLGVVNLCAERKLPFVAGHALNCYNAVTLRRLLKEGMVRWCMPVELSRDWLVNLLNQCDELGIRNQFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRDVLSQENQQVFVLNGIQTMSGYVYNLGNELTSMQGLVDIVRLSPLGTETFAMLDAFRANENGGAPLPLAAHSDCNGYWKRLAGLELQA
>NZ_LT883153.1|WP_000421309.1|601692_602688_-|U32-family-peptidase
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASATNEEAIRFYHRNFDVHRVVLPRVLSIHQVKQLARVTPVPLEVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNDVLIDRYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCKAAPQNFVPQRDWMETLGAMSEGTQTTLGAYHRKWQ
>NZ_LT883153.1|WP_000884720.1|602904_603429_+|SCP2-domain-containing-protein
MLDKLRSRLVHAGPSLMSVPVKLTPFALKRQVLEQVLSWQFRQALADGELEFLEGRWLSIHVRDIDLKWYTTVENEKLIVSQQADADVSFSADASDLLMIAARKQDPDTLFFQRRLVIEGDTELGLYVKNLMDAIELEQMPKALRIMLLQLADFVEAGMKNSPETKQTSVGEPC
>NZ_LT883153.1|WP_000908562.1|603422_603926_+|N-acetyltransferase
MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGLVATDDEGQVVGYVAFSPVDVQGEDLQWVGMAPLAVDEKYRGQGLARQLVYEGLDSLNEFGYAAVVTLGDPALYSRFGFELAAHYDLHCRWPGTESAFQVHRLAEDALEGVTGLVEYHDHFNRF
>NZ_LT883153.1|WP_000928379.1|603912_604230_-|GIY-YIG-nuclease-family-protein
MLMATMTPWYLYLIRTADNALYTGITTDVARRYRQHQTGKGAKALRGKGELTLAFAAQVGDRSLALRIEYRIKQLTKRQKERLVTEREAFEALLSSLQTPVLKND
>NZ_LT883153.1|WP_000380404.1|604267_604711_+|YhbP-family-protein
MDTLTAIGRWLAKQHVVTWCVHHEGELWCANAFYLFDAQNVALYLLTDDKTRHAQMSGACAPVAGTVNGQPKTVARIRGVQFKGEIRRLEGQESDAARKAYLRRFPVARVLPAPVWEIRLDEIKFTDNTLGFGKKLHWLRDSRAQQA
>NZ_LT883153.1|WP_000037599.1|604690_605209_-|protein/nucleic-acid-deglycase
MSKKIAVLITDEFEDSEFTSPAAEFRQAGHEVITIEKEAGKTVKGKKGEASVTIDKAIDDVRPDEFDALLLPGGHSPDYLRGDSRFVDFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLGA
>NZ_LT883153.1|WP_001638995.1|605339_605975_+|NAD(P)H-binding-protein
MSQVLITGATGLVGGHLLRMLINTPQVSAIAAPTRRPLTDIVGVYNPHDPQLTDALAQVTDPVDIVFCCLGTTRREAGSKAAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPRLTIARPSMLLGDRTTRRVNETLFAPLFRLLPGNWKSIDARDVARAMLAEALEPAQEGVTILTSSQLREKAG

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Crispr_ID: NZ_LT883153_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT883153_2

973711-974131

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR

6 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e

The CRISPR arrays of NZ_LT883153_2

>merge|NZ_LT883153|2|973711-974131|CRISPRCasFinder,CRT,PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCGATCCCCGCGCCAGCGGGGATAAACCGATCCCCGCGGAGGTTGCGCAACCGGTGTTTTAGTGTTCCCCGCACCAGCGGGGATAAACCGTAAAACTATAACCAACATTAATCTTTTTTAATGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCGCCAAAGAGGGCGACGTAAAGGCGTATCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGGTAAAAATCACGGTCGGCATACATCGTGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCAATTCACGCGGCGGCGATTGGCGATTCGCGTGTGTTCCCCGCGCCAGCGGGGATAAACCGATCTGTCTGATATCCGACACGGGTTGCTGTCCGTGTTCCCCGCGCCAGCGGGGATAAACAC

>NZ_LT883153|2|2|973711-974131|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCCCGCGCCAGCGGGGATAAACCGATCCCCGCGGAGGTTGCGCAACCGGTGTTTTA
GTGTTCCCCGCACCAGCGGGGATAAACCG	TAAAACTATAACCAACATTAATCTTTTTTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGCCAAAGAGGGCGACGTAAAGGCGTATCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGTAAAAATCACGGTCGGCATACATCGTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATTCACGCGGCGGCGATTGGCGATTCGCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCTGTCTGATATCCGACACGGGTTGCTGTCC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

>NZ_LT883153|2|1|973737-974131|CRT
CCGATCCCCGCGCCAGCGGGGATAAACCG	ATCCCCGCGGAGGTTGCGCAACCGGTGTTTTA
GTGTTCCCCGCACCAGCGGGGATAAACCG	TAAAACTATAACCAACATTAATCTTTTTTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGCCAAAGAGGGCGACGTAAAGGCGTATCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGTAAAAATCACGGTCGGCATACATCGTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATTCACGCGGCGGCGATTGGCGATTCGCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCTGTCTGATATCCGACACGGGTTGCTGTCC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

>NZ_LT883153|2|1|973798-974131|PILER-CR
GTGTTCCCCGCACCAGCGGGGATAAACCG	TAAAACTATAACCAACATTAATCTTTTTTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGCCAAAGAGGGCGACGTAAAGGCGTATCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGTAAAAATCACGGTCGGCATACATCGTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATTCACGCGGCGGCGATTGGCGATTCGCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCTGTCTGATATCCGACACGGGTTGCTGTCC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT883153.1\|WP_000134253.1\|980472_981522_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_LT883153.1\|WP_000517480.1\|978956_979268_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_LT883153.1\|WP_000118669.1\|972412_973330_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_LT883153.1\|WP_001219244.1\|979996_980476_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_LT883153.1\|WP_000062282.1\|973332_973626_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_LT883153.1\|WP_000080392.1\|962524_963259_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_LT883153.1\|WP_001092273.1\|976360_977800_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_LT883153.1\|WP_000366321.1\|967738_969274_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_LT883153.1\|WP_000606123.1\|969909_970974_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_LT883153.1\|WP_000935107.1\|969290_969893_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_LT883153.1\|WP_000372384.1\|975442_976351_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_LT883153.1\|WP_001118109.1\|978409_978766_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_LT883153.1\|WP_000741649.1\|979286_979997_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_LT883153.1\|WP_000666425.1\|970983_971709_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_LT883153.1\|WP_001291998.1\|960736_962449_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_LT883153.1\|WP_001221538.1\|981502_982264_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_LT883153.1\|WP_000490486.1\|974145_975192_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_LT883153.1\|WP_001173663.1\|977786_978392_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_LT883153.1\|WP_000281411.1\|971708_972413_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187795
NZ_LT883153.1\|WP_001145541.1\|963346_964300_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277

Protein	Function_ID	Function_description	E-value
NZ_LT883153.1\|WP_000134253.1\|980472_981522_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_LT883153.1\|WP_000517480.1\|978956_979268_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_LT883153.1\|WP_000118669.1\|972412_973330_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.77553e-155
NZ_LT883153.1\|WP_001219244.1\|979996_980476_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
NZ_LT883153.1\|WP_000062282.1\|973332_973626_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	5.81067e-65
NZ_LT883153.1\|WP_000080392.1\|962524_963259_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.17372e-138
NZ_LT883153.1\|WP_001092273.1\|976360_977800_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_LT883153.1\|WP_000366321.1\|967738_969274_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_LT883153.1\|WP_000606123.1\|969909_970974_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	2.07119e-119
NZ_LT883153.1\|WP_000935107.1\|969290_969893_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	5.74874e-39
NZ_LT883153.1\|WP_000372384.1\|975442_976351_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_LT883153.1\|WP_001118109.1\|978409_978766_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
NZ_LT883153.1\|WP_000741649.1\|979286_979997_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.24126e-119
NZ_LT883153.1\|WP_000666425.1\|970983_971709_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	3.27863e-48
NZ_LT883153.1\|WP_001291998.1\|960736_962449_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_LT883153.1\|WP_001221538.1\|981502_982264_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NZ_LT883153.1\|WP_000490486.1\|974145_975192_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_LT883153.1\|WP_001173663.1\|977786_978392_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_LT883153.1\|WP_000281411.1\|971708_972413_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187795	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	2.23447e-89
NZ_LT883153.1\|WP_001145541.1\|963346_964300_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0

>NZ_LT883153.1|WP_000062282.1|973332_973626_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLAVWLLEIRAGVYVGDVSAKIREMIWQQVSVLADEGNVVMAWATNTESGFEFQTFGVNRRIPVDLDGLRLVSFLPVENQ
>NZ_LT883153.1|WP_000118669.1|972412_973330_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWGGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVRATYALLAKQYGVKWQGRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFEIVVPKAFEIARRNPAEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAAGEIQPPLPPEDSHPIAIPLPVALGDSGHRST
>NZ_LT883153.1|WP_000281411.1|971708_972413_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRIQLRFNNLRPEMLAKWNSARPYASHQWLWQLFPEQELRQFLFREEAHGGFFMLSAIPPLLQHSLFLIETKLFNPQLTNGLELDFQLRANPVITRNGKRSDVMMNAKHQAKANGVEKERWWELQQQAAQAWLEQQGQQHGFRLIAPEPDDFAMWAGDEYSELQAHCGCVQAYQQHRFVRKDQETPITFSSVDFSGALCITDAALFKQALFSGLGKSKALGCGMLMVKRKR
>NZ_LT883153.1|WP_000666425.1|970983_971709_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNRHYHLAVHALASQDRWLRDYHTVSAPRENKKYRYYTRRDELTLASDEVGTLISQREYRCDGYWHVAISATPDAPYSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQERT
>NZ_LT883153.1|WP_000606123.1|969909_970974_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MIMTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFDRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>NZ_LT883153.1|WP_000935107.1|969290_969893_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAVLCRILHPDAQKALLDWFATLSERYERKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKENISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERSRIRWANEYLSTSRGK
>NZ_LT883153.1|WP_000366321.1|967738_969274_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGLSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMNKAKVRCWYQHRIPLISVSHEEQFLAALNIVLVLASESLSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>NZ_LT883153.1|WP_001145541.1|963346_964300_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_LT883153.1|WP_000080392.1|962524_963259_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWAQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_LT883153.1|WP_001291998.1|960736_962449_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKYPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESELHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGITFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIEKLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYQENITEPDIQASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_LT883153.1|WP_000490486.1|974145_975192_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLNNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_LT883153.1|WP_000372384.1|975442_976351_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_LT883153.1|WP_001092273.1|976360_977800_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIASEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNPDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEVCAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAICYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_LT883153.1|WP_001173663.1|977786_978392_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_LT883153.1|WP_001118109.1|978409_978766_+|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_LT883153.1|WP_000517480.1|978956_979268_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_LT883153.1|WP_000741649.1|979286_979997_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_LT883153.1|WP_001219244.1|979996_980476_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_LT883153.1|WP_000134253.1|980472_981522_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADVLAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_LT883153.1|WP_001221538.1|981502_982264_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LT883153_2	2.4\|973949\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973949-973980	32	NZ_KY494864	Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence	453979-454010	5	0.844
NZ_LT883153_2	2.4\|973949\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973949-973980	32	NZ_KU130294	Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence	251896-251927	5	0.844
NZ_LT883153_2	2.4\|973949\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973949-973980	32	NZ_CP009975	Pseudomonas putida S12 plasmid pTTS12, complete sequence	6517-6548	5	0.844
NZ_LT883153_2	2.4\|973949\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973949-973980	32	NZ_CP039989	Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence	238872-238903	5	0.844
NZ_LT883153_2	2.4\|973949\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973949-973980	32	NZ_MN433457	Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence	235351-235382	5	0.844
NZ_LT883153_2	2.4\|973949\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973949-973980	32	NZ_CP029096	Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence	378779-378810	5	0.844
NZ_LT883153_2	2.4\|973949\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973949-973980	32	NZ_CP045003	Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence	82539-82570	5	0.844
NZ_LT883153_2	2.4\|973949\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973949-973980	32	NZ_CP045917	Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence	224279-224310	5	0.844
NZ_LT883153_2	2.4\|973949\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973949-973980	32	MF344571	Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence	221127-221158	5	0.844
NZ_LT883153_2	2.4\|973949\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973949-973980	32	MF344569	Pseudomonas aeruginosa plasmid p12939-PER, complete sequence	284046-284077	5	0.844
NZ_LT883153_2	2.4\|973949\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973949-973980	32	MF344570	Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence	219145-219176	5	0.844
NZ_LT883153_2	2.4\|973949\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973949-973980	32	NZ_CP039294	Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence	55495-55526	5	0.844
NZ_LT883153_2	2.4\|973949\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973949-973980	32	CP027478	Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence	376216-376247	5	0.844
NZ_LT883153_2	2.4\|973949\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973949-973980	32	NZ_CP015879	Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence	134871-134902	5	0.844
NZ_LT883153_2	2.4\|973949\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973949-973980	32	NZ_CP016215	Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence	88841-88872	5	0.844
NZ_LT883153_2	2.2\|973827\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973827-973858	32	KJ019071	Synechococcus phage ACG-2014g isolate Syn7803US105, complete genome	59609-59640	7	0.781
NZ_LT883153_2	2.2\|973827\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973827-973858	32	MN694480	Marine virus AFVG_250M133, complete genome	20886-20917	7	0.781
NZ_LT883153_2	2.2\|973827\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973827-973858	32	MN694671	Marine virus AFVG_250M145, complete genome	23163-23194	7	0.781
NZ_LT883153_2	2.2\|973827\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973827-973858	32	MN694753	Marine virus AFVG_250M144, complete genome	25459-25490	7	0.781
NZ_LT883153_2	2.2\|973827\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973827-973858	32	MN694231	Marine virus AFVG_250M143, complete genome	21163-21194	7	0.781
NZ_LT883153_2	2.2\|973827\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973827-973858	32	MN693981	Marine virus AFVG_250M146, complete genome	18773-18804	7	0.781
NZ_LT883153_2	2.2\|973827\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973827-973858	32	NZ_CP046723	Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence	559039-559070	8	0.75
NZ_LT883153_2	2.2\|973827\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973827-973858	32	NZ_CP034470	Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence	214654-214685	8	0.75
NZ_LT883153_2	2.2\|973827\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973827-973858	32	NZ_CP034149	Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence	578776-578807	8	0.75
NZ_LT883153_2	2.2\|973827\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973827-973858	32	NZ_CP034475	Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence	592092-592123	8	0.75
NZ_LT883153_2	2.2\|973827\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973827-973858	32	MN694115	Marine virus AFVG_250M901, complete genome	49467-49498	8	0.75
NZ_LT883153_2	2.2\|973827\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973827-973858	32	NZ_CP046630	Streptococcus equinus strain CNU G6 plasmid p1_CNU_G6, complete sequence	66427-66458	9	0.719
NZ_LT883153_2	2.2\|973827\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973827-973858	32	NZ_CP046920	Streptococcus sp. CNU G2 plasmid p_CNU_G2, complete sequence	70206-70237	9	0.719
NZ_LT883153_2	2.2\|973827\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973827-973858	32	MN694046	Marine virus AFVG_250M906, complete genome	22321-22352	9	0.719
NZ_LT883153_2	2.2\|973827\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973827-973858	32	MN693836	Marine virus AFVG_250M487, complete genome	10882-10913	9	0.719
NZ_LT883153_2	2.2\|973827\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973827-973858	32	MN693891	Marine virus AFVG_250M480, complete genome	21841-21872	9	0.719
NZ_LT883153_2	2.2\|973827\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973827-973858	32	MK268344	Salmonella phage Munch, complete genome	122526-122557	9	0.719
NZ_LT883153_2	2.2\|973827\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973827-973858	32	MN694071	Marine virus AFVG_250M483, complete genome	16976-17007	9	0.719
NZ_LT883153_2	2.2\|973827\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973827-973858	32	MN694294	Marine virus AFVG_250M486, complete genome	8469-8500	9	0.719
NZ_LT883153_2	2.2\|973827\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973827-973858	32	MN693751	Marine virus AFVG_250M485, complete genome	13096-13127	9	0.719
NZ_LT883153_2	2.2\|973827\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973827-973858	32	MN694002	Marine virus AFVG_250M481, complete genome	18787-18818	9	0.719
NZ_LT883153_2	2.2\|973827\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973827-973858	32	MN694650	Marine virus AFVG_250M482, complete genome	20198-20229	9	0.719
NZ_LT883153_2	2.2\|973827\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973827-973858	32	MN693906	Marine virus AFVG_250M905, complete genome	17506-17537	9	0.719
NZ_LT883153_2	2.2\|973827\|32\|NZ_LT883153\|CRISPRCasFinder,CRT,PILER-CR	973827-973858	32	MN694711	Marine virus AFVG_250M484, complete genome	24974-25005	9	0.719
NZ_LT883153_2	2.7\|973766\|32\|NZ_LT883153\|CRT	973766-973797	32	KR052482	Sinorhizobium phage phiN3, complete genome	197290-197321	9	0.719

1. spacer 2.4|973949|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY494864 (Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence) position: , mismatch: 5, identity: 0.844

gcggtaaaaatcacggtcggcatacatcgtgg	CRISPR spacer
gctcgaaaaatcacgctcgggatacatcgtgg	Protospacer
**   ********** **** ***********

2. spacer 2.4|973949|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KU130294 (Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence) position: , mismatch: 5, identity: 0.844

gcggtaaaaatcacggtcggcatacatcgtgg	CRISPR spacer
gctcgaaaaatcacgctcgggatacatcgtgg	Protospacer
**   ********** **** ***********

3. spacer 2.4|973949|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009975 (Pseudomonas putida S12 plasmid pTTS12, complete sequence) position: , mismatch: 5, identity: 0.844

gcggtaaaaatcacggtcggcatacatcgtgg	CRISPR spacer
gctcgaaaaatcacgctcgggatacatcgtgg	Protospacer
**   ********** **** ***********

4. spacer 2.4|973949|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039989 (Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence) position: , mismatch: 5, identity: 0.844

gcggtaaaaatcacggtcggcatacatcgtgg	CRISPR spacer
gctcgaaaaatcacgctcgggatacatcgtgg	Protospacer
**   ********** **** ***********

5. spacer 2.4|973949|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MN433457 (Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence) position: , mismatch: 5, identity: 0.844

gcggtaaaaatcacggtcggcatacatcgtgg	CRISPR spacer
gctcgaaaaatcacgctcgggatacatcgtgg	Protospacer
**   ********** **** ***********

6. spacer 2.4|973949|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029096 (Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

gcggtaaaaatcacggtcggcatacatcgtgg	CRISPR spacer
gctcgaaaaatcacgctcgggatacatcgtgg	Protospacer
**   ********** **** ***********

7. spacer 2.4|973949|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045003 (Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence) position: , mismatch: 5, identity: 0.844

gcggtaaaaatcacggtcggcatacatcgtgg	CRISPR spacer
gctcgaaaaatcacgctcgggatacatcgtgg	Protospacer
**   ********** **** ***********

8. spacer 2.4|973949|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045917 (Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence) position: , mismatch: 5, identity: 0.844

gcggtaaaaatcacggtcggcatacatcgtgg	CRISPR spacer
gctcgaaaaatcacgctcgggatacatcgtgg	Protospacer
**   ********** **** ***********

9. spacer 2.4|973949|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to MF344571 (Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence) position: , mismatch: 5, identity: 0.844

gcggtaaaaatcacggtcggcatacatcgtgg	CRISPR spacer
gctcgaaaaatcacgctcgggatacatcgtgg	Protospacer
**   ********** **** ***********

10. spacer 2.4|973949|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to MF344569 (Pseudomonas aeruginosa plasmid p12939-PER, complete sequence) position: , mismatch: 5, identity: 0.844

gcggtaaaaatcacggtcggcatacatcgtgg	CRISPR spacer
gctcgaaaaatcacgctcgggatacatcgtgg	Protospacer
**   ********** **** ***********

11. spacer 2.4|973949|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to MF344570 (Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence) position: , mismatch: 5, identity: 0.844

gcggtaaaaatcacggtcggcatacatcgtgg	CRISPR spacer
gctcgaaaaatcacgctcgggatacatcgtgg	Protospacer
**   ********** **** ***********

12. spacer 2.4|973949|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039294 (Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence) position: , mismatch: 5, identity: 0.844

gcggtaaaaatcacggtcggcatacatcgtgg	CRISPR spacer
gctcgaaaaatcacgctcgggatacatcgtgg	Protospacer
**   ********** **** ***********

13. spacer 2.4|973949|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to CP027478 (Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.844

gcggtaaaaatcacggtcggcatacatcgtgg	CRISPR spacer
gctcgaaaaatcacgctcgggatacatcgtgg	Protospacer
**   ********** **** ***********

14. spacer 2.4|973949|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015879 (Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence) position: , mismatch: 5, identity: 0.844

gcggtaaaaatcacggtcggcatacatcgtgg	CRISPR spacer
gctcgaaaaatcacgctcgggatacatcgtgg	Protospacer
**   ********** **** ***********

15. spacer 2.4|973949|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016215 (Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence) position: , mismatch: 5, identity: 0.844

gcggtaaaaatcacggtcggcatacatcgtgg	CRISPR spacer
gctcgaaaaatcacgctcgggatacatcgtgg	Protospacer
**   ********** **** ***********

16. spacer 2.2|973827|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to KJ019071 (Synechococcus phage ACG-2014g isolate Syn7803US105, complete genome) position: , mismatch: 7, identity: 0.781

taaaactataaccaacattaatcttttttaat	CRISPR spacer
ctaaactataaccaacattaaccattgtaatt	Protospacer
. *******************.* ** * * *

17. spacer 2.2|973827|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to MN694480 (Marine virus AFVG_250M133, complete genome) position: , mismatch: 7, identity: 0.781

taaaactataaccaacattaatc----ttttttaat	CRISPR spacer
taaaactacaactaacattaatcgaaattttc----	Protospacer
********.***.**********    ****.

18. spacer 2.2|973827|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to MN694671 (Marine virus AFVG_250M145, complete genome) position: , mismatch: 7, identity: 0.781

taaaactataaccaacattaatc----ttttttaat	CRISPR spacer
taaaactacaactaacattaatcgaaattttc----	Protospacer
********.***.**********    ****.

19. spacer 2.2|973827|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to MN694753 (Marine virus AFVG_250M144, complete genome) position: , mismatch: 7, identity: 0.781

taaaactataaccaacattaatc----ttttttaat	CRISPR spacer
taaaactacaactaacattaatcgaaattttc----	Protospacer
********.***.**********    ****.

20. spacer 2.2|973827|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to MN694231 (Marine virus AFVG_250M143, complete genome) position: , mismatch: 7, identity: 0.781

taaaactataaccaacattaatc----ttttttaat	CRISPR spacer
taaaactacaactaacattaatcgaaattttc----	Protospacer
********.***.**********    ****.

21. spacer 2.2|973827|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to MN693981 (Marine virus AFVG_250M146, complete genome) position: , mismatch: 7, identity: 0.781

taaaactataaccaacattaatc----ttttttaat	CRISPR spacer
taaaactacaactaacattaatcgaaattttc----	Protospacer
********.***.**********    ****.

22. spacer 2.2|973827|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046723 (Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence) position: , mismatch: 8, identity: 0.75

taaaacta--taaccaacattaatcttttttaat	CRISPR spacer
--acgttgattaaacaacattaatctttcttaat	Protospacer
  * ..*.  *** **************.*****

23. spacer 2.2|973827|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034470 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence) position: , mismatch: 8, identity: 0.75

taaaacta--taaccaacattaatcttttttaat	CRISPR spacer
--acgttgattaaacaacattaatctttcttaat	Protospacer
  * ..*.  *** **************.*****

24. spacer 2.2|973827|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034149 (Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence) position: , mismatch: 8, identity: 0.75

taaaacta--taaccaacattaatcttttttaat	CRISPR spacer
--acgttgattaaacaacattaatctttcttaat	Protospacer
  * ..*.  *** **************.*****

25. spacer 2.2|973827|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034475 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence) position: , mismatch: 8, identity: 0.75

taaaacta--taaccaacattaatcttttttaat	CRISPR spacer
--acgttgattaaacaacattaatctttcttaat	Protospacer
  * ..*.  *** **************.*****

26. spacer 2.2|973827|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to MN694115 (Marine virus AFVG_250M901, complete genome) position: , mismatch: 8, identity: 0.75

taaaactataaccaacattaatcttttttaat	CRISPR spacer
ttacggaagaaccaagattaatattttttaat	Protospacer
* * .  * ****** ****** *********

27. spacer 2.2|973827|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046630 (Streptococcus equinus strain CNU G6 plasmid p1_CNU_G6, complete sequence) position: , mismatch: 9, identity: 0.719

taaaactataaccaacattaatcttttttaat	CRISPR spacer
agttattataaacaacattaatcatttttctt	Protospacer
 .  *.***** *********** *****  *

28. spacer 2.2|973827|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046920 (Streptococcus sp. CNU G2 plasmid p_CNU_G2, complete sequence) position: , mismatch: 9, identity: 0.719

taaaactataaccaacattaatcttttttaat	CRISPR spacer
agttattataaacaacattaatcatttttctt	Protospacer
 .  *.***** *********** *****  *

29. spacer 2.2|973827|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to MN694046 (Marine virus AFVG_250M906, complete genome) position: , mismatch: 9, identity: 0.719

taaaactataaccaacattaatc-----ttttttaat	CRISPR spacer
taaaactacaactaacattaatcgaaaacttc-----	Protospacer
********.***.**********     .**.

30. spacer 2.2|973827|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to MN693836 (Marine virus AFVG_250M487, complete genome) position: , mismatch: 9, identity: 0.719

taaaactataaccaacattaatc-----ttttttaat	CRISPR spacer
taaaactacaactaacattaatcgaaaacttc-----	Protospacer
********.***.**********     .**.

31. spacer 2.2|973827|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to MN693891 (Marine virus AFVG_250M480, complete genome) position: , mismatch: 9, identity: 0.719

taaaactataaccaacattaatc-----ttttttaat	CRISPR spacer
taaaactacaactaacattaatcgaaaacttc-----	Protospacer
********.***.**********     .**.

32. spacer 2.2|973827|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to MK268344 (Salmonella phage Munch, complete genome) position: , mismatch: 9, identity: 0.719

taaaactataaccaacattaatcttttttaat	CRISPR spacer
taaaactaaaaccatcattaatcaatgctgcc	Protospacer
******** ***** ********  * .*. .

33. spacer 2.2|973827|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to MN694071 (Marine virus AFVG_250M483, complete genome) position: , mismatch: 9, identity: 0.719

taaaactataaccaacattaatc-----ttttttaat	CRISPR spacer
taaaactacaactaacattaatcgaaaacttc-----	Protospacer
********.***.**********     .**.

34. spacer 2.2|973827|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to MN694294 (Marine virus AFVG_250M486, complete genome) position: , mismatch: 9, identity: 0.719

taaaactataaccaacattaatc-----ttttttaat	CRISPR spacer
taaaactacaactaacattaatcgaaaacttc-----	Protospacer
********.***.**********     .**.

35. spacer 2.2|973827|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to MN693751 (Marine virus AFVG_250M485, complete genome) position: , mismatch: 9, identity: 0.719

taaaactataaccaacattaatc-----ttttttaat	CRISPR spacer
taaaactacaactaacattaatcgaaaacttc-----	Protospacer
********.***.**********     .**.

36. spacer 2.2|973827|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to MN694002 (Marine virus AFVG_250M481, complete genome) position: , mismatch: 9, identity: 0.719

taaaactataaccaacattaatc-----ttttttaat	CRISPR spacer
taaaactacaactaacattaatcgaaaacttc-----	Protospacer
********.***.**********     .**.

37. spacer 2.2|973827|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to MN694650 (Marine virus AFVG_250M482, complete genome) position: , mismatch: 9, identity: 0.719

taaaactataaccaacattaatc-----ttttttaat	CRISPR spacer
taaaactacaactaacattaatcgaaaacttc-----	Protospacer
********.***.**********     .**.

38. spacer 2.2|973827|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to MN693906 (Marine virus AFVG_250M905, complete genome) position: , mismatch: 9, identity: 0.719

taaaactataaccaacattaatc-----ttttttaat	CRISPR spacer
taaaactacaactaacattaatcgaaaacttc-----	Protospacer
********.***.**********     .**.

39. spacer 2.2|973827|32|NZ_LT883153|CRISPRCasFinder,CRT,PILER-CR matches to MN694711 (Marine virus AFVG_250M484, complete genome) position: , mismatch: 9, identity: 0.719

taaaactataaccaacattaatc-----ttttttaat	CRISPR spacer
taaaactacaactaacattaatcgaaaacttc-----	Protospacer
********.***.**********     .**.

40. spacer 2.7|973766|32|NZ_LT883153|CRT matches to KR052482 (Sinorhizobium phage phiN3, complete genome) position: , mismatch: 9, identity: 0.719

atccccgcggaggttgcgcaaccggtgtttta	CRISPR spacer
ttttttgcgtaggtttcgcaaccggtgttgtt	Protospacer
 *....*** ***** ************* *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

12649 : 30058

Escherichia_phage(33.33%)

integrase,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001138064.1\|12649_15616_-\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.6
WP_000147567.1\|15618_16179_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
WP_000454193.1\|16304_16655_-	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_000845048.1\|16857_17871_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_000703418.1\|18028_18502_+	trimethoprim-resistant dihydrofolate reductase DfrA7	A0A1B2IBQ4	Erwinia_phage	8.4e-16	32.0
WP_000679427.1\|18731_19079_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|19072_19912_+	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA
WP_001067855.1\|20145_20850_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001387387.1\|20896_21298_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000027057.1\|21447_22308_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001067855.1\|22807_23512_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000480968.1\|23572_24409_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_024261901.1\|24408_25212_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	Q75ZG1	Hepacivirus	4.9e-24	34.3
WP_001043265.1\|25272_26088_-	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA	NA	NA
WP_000240536.1\|26395_27247_-	replication protein	NA	NA	NA	NA
WP_001067855.1\|28002_28707_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000935452.1\|28753_30058_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA

DBSCAN-SWA_2

764326 : 808029

Acinetobacter_phage(25.0%)

protease,transposase,tRNA,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000421096.1\|764326_764605_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_000768134.1\|764847_765114_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_001141622.1\|765110_765428_-	hypothetical protein	NA	NA	NA	NA
WP_071525158.1\|766548_766728_-	type VI secretion system protein	NA	NA	NA	NA
WP_001681938.1\|767077_767362_-	DUF4102 domain-containing protein	A0A0P0IRB7	Acinetobacter_phage	3.2e-10	35.2
WP_000234466.1\|767703_768411_-	DUF554 domain-containing protein	NA	NA	NA	NA
WP_001049802.1\|771021_772278_-	nucleoside permease	NA	NA	NA	NA
WP_000976287.1\|772494_773580_-	membrane-bound lytic murein transglycosylase MltC	A0A0H3V0Q1	Geobacillus_virus	5.8e-12	39.0
WP_000091706.1\|773692_773968_-	oxidative damage protection protein	NA	NA	NA	NA
WP_001148958.1\|773995_775048_-	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_000786887.1\|775202_775922_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_001107559.1\|775921_776248_+	YggL family protein	NA	NA	NA	NA
WP_000984827.1\|776297_777017_+	DUF2884 domain-containing protein	NA	NA	NA	NA
WP_000502119.1\|777139_777598_-\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA
WP_000394189.1\|777916_778963_+	L-asparaginase 2	NA	NA	NA	NA
WP_000252198.1\|779095_780103_+	DUF1202 domain-containing protein	NA	NA	NA	NA
WP_001096530.1\|780193_781330_-	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_001174773.1\|781322_781916_-	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_001277205.1\|781923_782214_-	YggU family protein	NA	NA	NA	NA
WP_001094848.1\|782210_782777_-	YggT family protein	NA	NA	NA	NA
WP_000997790.1\|782795_783500_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_001055657.1\|783517_784498_+	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_000098333.1\|784627_785314_+	global regulatory protein	NA	NA	NA	NA
WP_001285491.1\|785360_785777_-	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_001053167.1\|785776_786340_-	YqgE/AlgH family protein	NA	NA	NA	NA
WP_000593242.1\|786555_787503_-	glutathione synthase	NA	NA	NA	NA
WP_001800534.1\|787522_788254_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_000286121.1\|788330_789038_-	deoxyribonuclease I	NA	NA	NA	NA
WP_000856775.1\|789133_789631_-\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_001113171.1\|789709_791104_-	sugar porter family MFS transporter	NA	NA	NA	NA
WP_001062140.1\|791596_792751_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.5e-130	63.9
WP_001803086.1\|792806_793106_+	hypothetical protein	NA	NA	NA	NA
WP_000729109.1\|793400_793532_+	acid stress response protein YqgB	NA	NA	NA	NA
WP_001278580.1\|793540_795517_+	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_000105550.1\|795744_796665_+	agmatinase	NA	NA	NA	NA
WP_000701830.1\|796765_797524_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_000098658.1\|797799_799791_+	transketolase	NA	NA	NA	NA
WP_000502119.1\|799979_800438_+\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA
WP_000956919.1\|800542_801199_-	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	1.6e-09	28.6
WP_000367758.1\|801192_801876_-	energy-coupling factor ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_000553254.1\|801857_802565_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_000124001.1\|802565_803144_-	ECF transporter S component	NA	NA	NA	NA
WP_000218564.1\|803169_803595_-	DNA-binding protein	NA	NA	NA	NA
WP_000218338.1\|803968_805015_+	erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA
WP_000111274.1\|805036_806200_+	phosphoglycerate kinase	NA	NA	NA	NA
WP_000034386.1\|806301_807381_+	class II fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_001204111.1\|807570_808029_+\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1073412 : 1139403

Salmonella_phage(41.18%)

tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000047238.1\|1073412_1076043_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	3.5e-79	38.3
WP_000906486.1\|1076277_1076463_+	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	4.9e-12	66.7
WP_000271296.1\|1077861_1078428_+	fructose-1-phosphate/6-phosphogluconate phosphatase	M1I5S4	Acanthocystis_turfacea_Chlorella_virus	7.2e-14	27.6
WP_001279499.1\|1078424_1078850_+	DedA family protein	NA	NA	NA	NA
WP_000611827.1\|1078926_1080483_+	glutamate--cysteine ligase	NA	NA	NA	NA
WP_001130194.1\|1080632_1081148_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_000645128.1\|1081493_1082864_+	glycoporin	NA	NA	NA	NA
WP_001187289.1\|1082912_1084451_-	multidrug efflux MFS transporter permease subunit EmrB	NA	NA	NA	NA
WP_001275597.1\|1084467_1085640_-	multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA	NA	NA	NA
WP_000378431.1\|1085766_1086297_-	transcriptional repressor MprA	NA	NA	NA	NA
WP_000165770.1\|1086793_1087978_-	MFS transporter	NA	NA	NA	NA
WP_001216613.1\|1088142_1089138_-	glycine betaine/L-proline ABC transporter substrate-binding protein ProX	NA	NA	NA	NA
WP_000775015.1\|1089207_1090272_-	glycine betaine/L-proline ABC transporter permease ProW	NA	NA	NA	NA
WP_000777898.1\|1091820_1092780_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A0M4S3B4	Mycobacterium_phage	4.0e-129	71.8
WP_000201426.1\|1092790_1094935_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	3.5e-194	49.0
WP_001275403.1\|1094907_1095318_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	4.3e-16	41.8
WP_000028873.1\|1095314_1095560_-	glutaredoxin-like protein NrdH	NA	NA	NA	NA
WP_010989219.1\|1095658_1095835_-	hypothetical protein	NA	NA	NA	NA
WP_000209805.1\|1095831_1096263_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_001519557.1\|1097769_1098096_-	DUF883 domain-containing protein	NA	NA	NA	NA
WP_000281304.1\|1098257_1098608_+	YgaC family protein	NA	NA	NA	NA
WP_000492647.1\|1098642_1099092_-	L-alanine exporter AlaE	NA	NA	NA	NA
WP_001051100.1\|1099790_1100192_+	DNA-binding protein StpA	NA	NA	NA	NA
WP_000022010.1\|1100540_1101068_-	DUF2892 domain-containing protein	NA	NA	NA	NA
WP_000137417.1\|1101077_1101377_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000508175.1\|1101559_1101718_+	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA
WP_000126152.1\|1102288_1102966_-	DNA-binding transcriptional regulator CsiR	NA	NA	NA	NA
WP_001095643.1\|1104537_1105821_-	4-aminobutyrate--2-oxoglutarate transaminase	A0A1V0SKB7	Klosneuvirus	1.2e-32	31.4
WP_001176534.1\|1105835_1107284_-	NADP-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_000271916.1\|1107305_1108574_-	L-2-hydroxyglutarate oxidase	NA	NA	NA	NA
WP_001782268.1\|1108599_1109586_-	carbon starvation induced protein CsiD	NA	NA	NA	NA
WP_000382024.1\|1109879_1111394_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA
WP_001574835.1\|1111404_1111839_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA
WP_000744418.1\|1111850_1112660_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_001237936.1\|1112814_1113489_+	transcriptional regulator TctD	NA	NA	NA	NA
WP_000872343.1\|1113475_1114891_+	sensor histidine kinase	NA	NA	NA	NA
WP_000947097.1\|1115131_1116037_+	HoxN/HupN/NixA family nickel/cobalt transporter	NA	NA	NA	NA
WP_000701509.1\|1116758_1117655_-	antimicrobial resistance protein Mig-14	NA	NA	NA	NA
WP_000178741.1\|1117948_1118878_-	VirK family antimicrobial peptide resistance protein	NA	NA	NA	NA
WP_001801692.1\|1119394_1120447_+	SPI-2 type III secretion system effector PipB2	NA	NA	NA	NA
WP_001682025.1\|1121468_1123649_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_000274373.1\|1123708_1124626_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_001239947.1\|1124657_1125902_-	esterase family protein	NA	NA	NA	NA
WP_001111827.1\|1126011_1129668_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.0e-44	28.6
WP_001221113.1\|1129748_1130864_-	glycosyltransferase	NA	NA	NA	NA
WP_000905046.1\|1131547_1132114_+	recombinase family protein	A0A0F7LA37	Escherichia_phage	1.1e-86	86.3
WP_000046142.1\|1132256_1133429_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.5e-204	90.3
WP_001207656.1\|1133438_1133954_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	5.6e-90	95.9
WP_001280897.1\|1134008_1134311_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	7.0e-40	89.0
WP_000763311.1\|1134325_1134445_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
WP_001282793.1\|1134437_1137515_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	63.0
WP_000980381.1\|1137511_1137997_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	2.4e-66	80.0
WP_001011760.1\|1137993_1139094_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	1.0e-176	88.3
WP_000972389.1\|1139184_1139403_+	transcriptional activator Ogr/delta	Q53ZE7	Salmonella_virus	1.9e-18	71.9

DBSCAN-SWA_4

1825830 : 1833142

Dickeya_phage(16.67%)

protease,integrase

attL 1827081:1827095|attR 1838260:1838274

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001201759.1\|1825830_1826949_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	8.1e-09	39.8
WP_000125880.1\|1826945_1828892_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
1827081:1827095	attL	NA	NA	NA	NA
WP_000447499.1\|1829021_1829243_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000520789.1\|1829566_1829887_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000934058.1\|1829917_1832194_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.8e-164	42.2
WP_001117984.1\|1832405_1832603_-	hypothetical protein	NA	NA	NA	NA
WP_001539594.1\|1832764_1833142_-\|integrase	integrase	A0A077KET4	Ralstonia_phage	1.2e-20	41.0
1838260:1838274	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1904280 : 1978380

Salmonella_phage(75.41%)

protease,tail,integrase,transposase,terminase,holin,head

attL 1886346:1886365|attR 1956953:1956972

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1886346:1886365	attL	NA	NA	NA	NA
WP_001262313.1\|1904280_1905573_-\|integrase	site-specific integrase	S4TSP2	Salmonella_phage	5.0e-252	99.8
WP_000065276.1\|1905617_1905866_-	excisionase family protein	S4TND0	Salmonella_phage	4.7e-42	100.0
WP_001754984.1\|1905906_1906146_-	DUF4060 family protein	S4TR31	Salmonella_phage	9.7e-37	96.2
WP_010989138.1\|1906151_1907033_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0M4R347	Salmonella_phage	1.2e-153	93.0
WP_000034527.1\|1907029_1908094_-	DGQHR domain-containing protein	T1SBJ4	Salmonella_phage	6.3e-152	74.6
WP_000187053.1\|1908171_1908852_-	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	1.9e-130	98.7
WP_001764962.1\|1908848_1909634_-	phage recombination protein Bet	A0A0M4RD39	Salmonella_phage	9.7e-150	99.6
WP_000995349.1\|1909639_1909936_-	host-nuclease inhibitor protein Gam	A0A0M5M5Z9	Salmonella_phage	4.4e-47	96.9
WP_000186242.1\|1910026_1910227_-	cell division protein FtsZ	G8C7T2	Escherichia_phage	2.4e-12	48.4
WP_001009036.1\|1910515_1910920_-	transcriptional regulator	H6WRX4	Salmonella_phage	7.1e-72	99.3
WP_000869365.1\|1911049_1911286_+	Cro/Cl family transcriptional regulator	H6WRX5	Salmonella_phage	1.1e-37	98.7
WP_001574095.1\|1911251_1911626_+	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
WP_001681803.1\|1911710_1912694_+	hypothetical protein	H6WRX7	Salmonella_phage	2.1e-162	99.7
WP_000800010.1\|1912696_1913446_+	DNA replication protein DnaC	S4TNF5	Salmonella_phage	3.6e-138	99.6
WP_000113623.1\|1913456_1913804_+	DUF977 family protein	H6WRX9	Salmonella_phage	4.8e-53	90.4
WP_000065105.1\|1913800_1914325_+	ead/Ea22-like family protein	A0A220NQV2	Salmonella_phage	1.8e-91	99.4
WP_000445792.1\|1914324_1914798_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.6e-67	80.1
WP_000208074.1\|1914801_1915374_+	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	1.3e-66	68.0
WP_001220318.1\|1915467_1915734_+	hypothetical protein	S4TNF2	Salmonella_phage	1.5e-46	100.0
WP_010989139.1\|1915815_1915977_+	hypothetical protein	NA	NA	NA	NA
WP_000509711.1\|1916219_1916399_+	hypothetical protein	NA	NA	NA	NA
WP_000963896.1\|1916409_1916907_+	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA
WP_001217670.1\|1917091_1917331_+	DinI family protein	H6WRY5	Salmonella_phage	3.9e-38	100.0
WP_001574100.1\|1917320_1917626_+	hypothetical protein	H6WRY6	Salmonella_phage	9.8e-42	100.0
WP_000929790.1\|1917665_1918268_+	DUF1367 family protein	S4TTI0	Salmonella_phage	7.5e-110	99.5
WP_001096560.1\|1918476_1919088_+	recombination protein NinG	A0A0M4RU10	Salmonella_phage	2.5e-92	99.5
WP_001617856.1\|1919084_1919231_+	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
WP_001047634.1\|1919220_1920018_+	antitermination protein	A0A0M4S661	Salmonella_phage	3.4e-150	99.2
WP_001534733.1\|1920416_1920542_+	hypothetical protein	NA	NA	NA	NA
WP_000798706.1\|1920677_1921127_-	lipoprotein	NA	NA	NA	NA
WP_001294876.1\|1921343_1921733_+	membrane protein	K7PHB9	Enterobacterial_phage	3.1e-40	70.2
WP_000226307.1\|1921719_1922001_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.6e-36	80.6
WP_001075998.1\|1922000_1922615_+	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	3.2e-108	93.1
WP_000495544.1\|1923192_1923570_+	hypothetical protein	Q6UAR9	Klebsiella_phage	4.9e-43	68.5
WP_001070544.1\|1923666_1923894_+	hypothetical protein	NA	NA	NA	NA
WP_001118118.1\|1923983_1924736_+	hypothetical protein	A0A0M3ULJ9	Salmonella_phage	3.4e-11	56.5
WP_000204794.1\|1924701_1926105_+\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	6.5e-189	70.1
WP_000113511.1\|1926104_1927574_+	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	1.7e-280	99.2
WP_138010671.1\|1927458_1928196_+\|head	phage head morphogenesis protein	A0A0M4REK0	Salmonella_phage	7.8e-101	88.1
WP_000873182.1\|1928210_1929443_+	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	1.4e-227	99.0
WP_000128060.1\|1929447_1929945_+	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	8.7e-88	99.4
WP_000627464.1\|1929956_1930898_+	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	3.1e-179	100.0
WP_001040702.1\|1930939_1931308_+	hypothetical protein	A0A0M4RTX5	Salmonella_phage	8.7e-61	100.0
WP_001125675.1\|1931273_1931681_+	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	7.1e-72	97.8
WP_000008737.1\|1931677_1932232_+	hypothetical protein	A0A0M4S631	Salmonella_phage	4.8e-95	100.0
WP_001142488.1\|1932218_1932608_+	hypothetical protein	A0A0M3ULK0	Salmonella_phage	6.0e-68	98.4
WP_000389379.1\|1932582_1933146_+	hypothetical protein	A0A0M4R331	Salmonella_phage	8.9e-81	75.3
WP_001135544.1\|1933149_1934295_+	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	2.2e-163	74.5
WP_000257259.1\|1934306_1934747_+	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	3.5e-56	74.7
WP_000389047.1\|1934750_1935203_+	hypothetical protein	A0A0M4S6U8	Salmonella_phage	1.9e-57	76.6
WP_000990867.1\|1935380_1937333_+	hypothetical protein	A0A0M4REK7	Salmonella_phage	1.8e-181	56.0
WP_000346974.1\|1937332_1937983_+	hypothetical protein	A0A0M3ULD5	Salmonella_phage	3.0e-56	60.6
WP_000388505.1\|1937986_1938289_+	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	2.0e-26	57.0
WP_000042301.1\|1938291_1939323_+	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	1.2e-96	51.4
WP_000826019.1\|1939319_1939655_+	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.1e-20	52.2
WP_000050472.1\|1939849_1940581_+	hypothetical protein	NA	NA	NA	NA
WP_001144794.1\|1940580_1941009_+	hypothetical protein	NA	NA	NA	NA
WP_001685627.1\|1941067_1941823_+	hypothetical protein	A0A0M5M1K7	Salmonella_phage	4.1e-105	85.3
WP_000564971.1\|1941910_1942048_+	hypothetical protein	A0A0M4S639	Salmonella_phage	2.0e-18	100.0
WP_001270647.1\|1942063_1942417_+	hypothetical protein	A0A0M4R339	Salmonella_phage	3.2e-60	98.3
WP_001197092.1\|1942417_1943617_+	hypothetical protein	A0A0M4RD32	Salmonella_phage	8.5e-214	97.5
WP_000049938.1\|1943613_1944294_+	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	6.9e-128	98.7
WP_001681975.1\|1944293_1945805_+	hypothetical protein	S4TP62	Salmonella_phage	1.5e-111	59.4
WP_000421106.1\|1945819_1946338_+\|tail	tail fiber assembly protein	A0A1B0VCD0	Salmonella_phage	1.7e-46	62.8
WP_000480169.1\|1947259_1947961_-	DUF1076 domain-containing protein	NA	NA	NA	NA
WP_000497443.1\|1948273_1948552_-	DinI-like family protein	S4TNM0	Salmonella_phage	2.4e-26	92.3
WP_000193884.1\|1948977_1951590_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	1.1e-19	22.6
WP_000291724.1\|1951797_1952808_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_001220671.1\|1952973_1953516_+	cell division protein ZapC	NA	NA	NA	NA
WP_000224084.1\|1953512_1954622_-	MOSC domain-containing protein	NA	NA	NA	NA
WP_001086472.1\|1954720_1956829_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	W6LLI2	Streptococcus_phage	5.1e-20	29.6
WP_000053045.1\|1956841_1958749_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
1956953:1956972	attR	NA	NA	NA	NA
WP_000333152.1\|1958763_1960017_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000433416.1\|1960021_1961662_+	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_000759136.1\|1961658_1962222_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_001764860.1\|1962475_1962643_+	ribosome modulation factor	NA	NA	NA	NA
WP_000227928.1\|1962742_1963261_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_000156455.1\|1963329_1965090_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000877174.1\|1965275_1965728_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_010989142.1\|1965799_1966852_-	porin OmpA	NA	NA	NA	NA
WP_000288732.1\|1967206_1967716_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_001202371.1\|1967932_1968538_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_000950867.1\|1968524_1970678_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001261222.1\|1970696_1971143_-	YccF domain-containing protein	NA	NA	NA	NA
WP_000420526.1\|1971266_1973321_+	DNA helicase IV	A7KV33	Bacillus_phage	6.5e-20	27.6
WP_000424187.1\|1973356_1973815_-	methylglyoxal synthase	NA	NA	NA	NA
WP_000847719.1\|1973909_1974572_-	DUF2057 family protein	NA	NA	NA	NA
WP_000975203.1\|1974742_1975159_+	CoA-binding protein	NA	NA	NA	NA
WP_000561983.1\|1975203_1975521_-	heat shock protein HspQ	NA	NA	NA	NA
WP_000140485.1\|1975578_1976790_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000502118.1\|1977921_1978380_+\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

2425920 : 2465504

Burkholderia_virus(40.0%)

protease,tail,head,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000549642.1\|2425920_2426742_+\|protease	serine protease	NA	NA	NA	NA
WP_001183821.1\|2426776_2427106_-	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA
WP_000500278.1\|2427092_2427455_-	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA
WP_001539987.1\|2427566_2427737_-	hypothetical protein	NA	NA	NA	NA
WP_001118268.1\|2427871_2428906_+	AI-2E family transporter	NA	NA	NA	NA
WP_001219360.1\|2430478_2432008_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA
WP_000769298.1\|2432534_2433479_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_001281695.1\|2433660_2434050_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.5e-31	54.2
WP_000988475.1\|2434021_2434474_-	regulatory protein GemA	A4JWM5	Burkholderia_virus	1.2e-24	46.6
WP_010989166.1\|2434463_2434679_-	hypothetical protein	NA	NA	NA	NA
WP_000631816.1\|2434668_2434899_-	hypothetical protein	NA	NA	NA	NA
WP_000132655.1\|2435574_2435790_-	hypothetical protein	NA	NA	NA	NA
WP_001315283.1\|2435782_2436166_-	hypothetical protein	K7PJQ4	Enterobacteria_phage	2.3e-27	58.9
WP_000197790.1\|2436162_2436465_-	hypothetical protein	NA	NA	NA	NA
WP_000632575.1\|2436474_2436747_-	hypothetical protein	NA	NA	NA	NA
WP_001140134.1\|2437035_2437566_-	host-nuclease inhibitor protein Gam	L7P7T1	Pseudomonas_phage	3.4e-58	66.1
WP_000843446.1\|2437593_2437863_-	hypothetical protein	NA	NA	NA	NA
WP_124682070.1\|2440986_2441325_-	hypothetical protein	A4JWN3	Burkholderia_virus	1.9e-22	57.1
WP_100208317.1\|2441413_2442010_+	nucleoid-associated protein	NA	NA	NA	NA
WP_000793143.1\|2442253_2442604_+	membrane protein	A4JWP3	Burkholderia_virus	4.5e-22	53.0
WP_001104436.1\|2442606_2443335_+	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.7e-61	57.4
WP_000264664.1\|2443318_2443969_+	lipoprotein	Q5ZQY9	Pseudomonas_phage	8.1e-09	32.9
WP_000175097.1\|2443965_2444292_+	membrane protein	Q6QIC4	Burkholderia_phage	9.6e-19	49.5
WP_000227700.1\|2444291_2444603_+	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	9.4e-32	62.6
WP_000117561.1\|2448214_2449036_+\|head	phage head morphogenesis protein	A4JWJ6	Burkholderia_virus	5.3e-98	61.2
WP_000135517.1\|2449038_2449497_+	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	1.5e-30	44.8
WP_001273072.1\|2449711_2450827_+	hypothetical protein	A4JWJ9	Burkholderia_virus	7.9e-97	51.1
WP_001286905.1\|2450841_2451795_+	hypothetical protein	A4JWK0	Burkholderia_virus	5.2e-65	44.5
WP_000271668.1\|2452143_2452590_+	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	2.2e-34	52.3
WP_001789770.1\|2453049_2453304_+	hypothetical protein	NA	NA	NA	NA
WP_000034292.1\|2454719_2455241_+\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	8.0e-68	68.2
WP_000110118.1\|2455243_2455525_+	hypothetical protein	NA	NA	NA	NA
WP_000458383.1\|2458595_2459480_+\|tail	phage tail protein	A4JWL1	Burkholderia_virus	7.5e-50	47.0
WP_010989167.1\|2459476_2459692_+	membrane protein	Q6QIA3	Burkholderia_phage	2.4e-18	60.0
WP_000808000.1\|2459679_2460834_+	phage late control D family protein	Q6QIA2	Burkholderia_phage	4.7e-84	47.1
WP_000148263.1\|2460830_2461358_+\|plate	phage baseplate assembly protein V	Q6QIA1	Burkholderia_phage	1.5e-21	46.5
WP_000852584.1\|2462846_2463425_+\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	6.4e-66	65.8
WP_088204032.1\|2463427_2463994_+\|tail	phage tail protein	F1BUP1	Erwinia_phage	8.0e-37	70.8
WP_072194399.1\|2463936_2464422_+\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	6.6e-40	52.4
WP_001057643.1\|2464421_2465039_+\|tail	tail assembly protein	Q9MCR5	Enterobacteria_phage	5.8e-65	59.9
WP_031624893.1\|2465045_2465504_-\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	5.6e-41	54.7

DBSCAN-SWA_7

2678543 : 2682955

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000497459.1\|2678543_2678783_+	virulence protein MsgA	K7P6H1	Enterobacteria_phage	5.5e-32	87.3
WP_001036668.1\|2678994_2679159_-	hypothetical protein	NA	NA	NA	NA
WP_001529135.1\|2679655_2680465_+	cytolethal distending toxin S-CDT	A5LH53	Enterobacteria_phage	2.1e-62	50.0
WP_001277616.1\|2680537_2680915_+	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
WP_000158843.1\|2681062_2681605_-	glycoside hydrolase family 108 protein	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
WP_001766395.1\|2681796_2682525_-	pertussis-like toxin subunit ArtA	A0A0U2KD26	Escherichia_phage	4.9e-63	53.3
WP_000281950.1\|2682541_2682955_-	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	1.4e-19	38.6

DBSCAN-SWA_8

2886816 : 2894050

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001157299.1\|2886816_2888247_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4
WP_000377043.1\|2888320_2889016_-	phosphohydrolase	S4W232	Pandoravirus	2.1e-07	27.5
WP_000107435.1\|2889095_2889407_-	hypothetical protein	NA	NA	NA	NA
WP_001080666.1\|2890057_2891242_+	porin OmpS1	Q1MVN1	Enterobacteria_phage	1.4e-107	56.4
WP_024131163.1\|2891502_2891691_-	hypothetical protein	NA	NA	NA	NA
WP_000208507.1\|2891701_2891914_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	1.5e-20	70.0
WP_000457648.1\|2892359_2893628_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	3.3e-224	91.2
WP_000394197.1\|2893630_2894050_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5

DBSCAN-SWA_9

3000350 : 3010857

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000126347.1\|3000350_3001664_-	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1
WP_000565909.1\|3001690_3002770_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.3e-16	24.1
WP_000648783.1\|3002774_3003548_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000018220.1\|3003563_3004538_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000973711.1\|3004543_3005095_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	7.7e-53	58.6
WP_000857536.1\|3005095_3005974_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.3e-107	64.8
WP_001023656.1\|3006021_3006921_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	7.9e-31	36.3
WP_000697846.1\|3006920_3008006_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
WP_000981469.1\|3008382_3009276_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_001111852.1\|3009453_3010857_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.1e-21	26.5

DBSCAN-SWA_10

3086748 : 3095919

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000195338.1\|3086748_3088782_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	6.1e-55	26.9
WP_000703137.1\|3089022_3089481_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_001197951.1\|3089652_3090183_+	YehR family lipoprotein	NA	NA	NA	NA
WP_000950413.1\|3090239_3090707_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_000598632.1\|3090753_3091473_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000272853.1\|3091469_3093155_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	1.1e-278	91.1
WP_001240415.1\|3093377_3094109_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_001261696.1\|3094168_3094276_+	protein YohO	NA	NA	NA	NA
WP_000824854.1\|3094256_3094988_-	ABC transporter permease	NA	NA	NA	NA
WP_000569166.1\|3094971_3095919_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2

DBSCAN-SWA_11

3330428 : 3336459

Salmonella_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000377769.1\|3330428_3331370_+	membrane protein	E7DYY8	Enterobacteria_phage	2.4e-147	88.2
WP_001682026.1\|3332612_3333002_+	GtrA family protein	A0A192Y6N5	Salmonella_phage	6.9e-56	91.5
WP_000703599.1\|3332970_3333225_+	glycosyltransferase	A8CG95	Salmonella_phage	3.1e-25	79.5
WP_044790602.1\|3333241_3335164_+	acyltransferase	A0A1R3Y5Q6	Salmonella_virus	3.6e-299	77.0
WP_106417236.1\|3336153_3336297_-	hypothetical protein	A0A1R3Y5S2	Salmonella_virus	9.0e-14	87.8
WP_106417237.1\|3336312_3336459_-	hypothetical protein	A0A1R3Y5S2	Salmonella_virus	1.1e-14	73.9

DBSCAN-SWA_12

3992800 : 4002565

Enterobacteria_phage(50.0%)

capsid,integrase

attL 3989371:3989384|attR 4000774:4000787

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3989371:3989384	attL	NA	NA	NA	NA
WP_015701354.1\|3992800_3993352_-	ash family protein	Q7M2A7	Enterobacteria_phage	1.1e-30	70.4
WP_000556589.1\|3993284_3993608_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	3.6e-26	70.0
WP_010989311.1\|3994030_3994891_+\|capsid	phage capsid protein	NA	NA	NA	NA
WP_000468230.1\|3994894_3995134_+	hypothetical protein	Q7M294	Enterobacteria_phage	3.7e-20	60.5
WP_000214423.1\|3995149_3995716_+	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.8e-60	64.9
WP_000493739.1\|3995991_3997155_+	hypothetical protein	NA	NA	NA	NA
WP_010989310.1\|3997129_3998203_+	serine/threonine protein kinase	G9BWE0	Planktothrix_phage	6.5e-56	44.7
WP_000573583.1\|3998199_3999276_+	serine/threonine protein kinase	A0A2H4UU60	Bodo_saltans_virus	7.8e-17	28.2
WP_000772672.1\|3999338_4000604_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	1.6e-74	41.0
WP_000152561.1\|4001074_4002565_+	alcohol dehydrogenase catalytic domain-containing protein	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	4.0e-11	36.1
4000774:4000787	attR	NA	NA	NA	NA

DBSCAN-SWA_13

4141528 : 4216064

Salmonella_phage(83.33%)

plate,tail,integrase,portal,terminase,capsid,lysis,head

attL 4171866:4171881|attR 4194869:4194884

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000954536.1\|4141528_4142788_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	3.2e-78	41.7
WP_000975154.1\|4143098_4144382_+	SH3 domain-containing protein	NA	NA	NA	NA
WP_000511749.1\|4145362_4146145_-	DNA-binding protein	NA	NA	NA	NA
WP_000193665.1\|4147001_4147223_-	transcriptional regulator	A0A2I7S995	Vibrio_phage	4.6e-17	58.3
WP_000246267.1\|4147219_4147681_-	hypothetical protein	NA	NA	NA	NA
WP_010989301.1\|4148227_4149901_+	hypothetical protein	NA	NA	NA	NA
WP_010989300.1\|4149981_4152267_+	hypothetical protein	NA	NA	NA	NA
WP_000905294.1\|4152558_4152822_+	hypothetical protein	NA	NA	NA	NA
WP_000434168.1\|4152903_4153356_+	hypothetical protein	NA	NA	NA	NA
WP_000622308.1\|4153535_4154024_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001143724.1\|4154020_4154314_-	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_000449622.1\|4154740_4155754_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_000488995.1\|4155917_4157507_-	hypothetical protein	NA	NA	NA	NA
WP_001120833.1\|4157490_4159002_-	ATP-dependent helicase	A0A126DN25	Acinetobacter_phage	2.0e-42	29.0
WP_001210944.1\|4159855_4160395_+	Vi polysaccharide biosynthesis regulator TviA	NA	NA	NA	NA
WP_000466893.1\|4160639_4161917_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	M1HYW7	Paramecium_bursaria_Chlorella_virus	1.3e-21	26.7
WP_000127915.1\|4161919_4162966_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	A0A2K9L0I7	Tupanvirus	1.4e-74	45.0
WP_072076597.1\|4162989_4165485_+	Vi polysaccharide biosynthesis protein TviD	NA	NA	NA	NA
WP_000632616.1\|4165484_4167221_+	Vi polysaccharide biosynthesis glycosyltransferase TviE	NA	NA	NA	NA
WP_000720235.1\|4167265_4168333_+	Vi polysaccharide ABC transporter protein VexA	NA	NA	NA	NA
WP_001023498.1\|4168342_4169137_+	Vi polysaccharide ABC transporter inner membrane protein VexB	NA	NA	NA	NA
WP_000467404.1\|4169162_4169858_+	Vi polysaccharide ABC transporter ATP-binding protein VexC	NA	NA	NA	NA
WP_000431675.1\|4169880_4171185_+	Vi polysaccharide ABC transporter inner membrane protein VexD	NA	NA	NA	NA
WP_000052242.1\|4171204_4173175_+	Vi polysaccharide transport protein VexE	NA	NA	NA	NA
4171866:4171881	attL	NA	NA	NA	NA
WP_000354257.1\|4173476_4174223_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001681808.1\|4174222_4175113_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001681810.1\|4175123_4175381_-	hypothetical protein	NA	NA	NA	NA
WP_000902197.1\|4176027_4176381_+	translesion error-prone DNA polymerase V autoproteolytic subunit	I6S1S3	Salmonella_phage	6.7e-10	59.3
WP_000027757.1\|4176487_4177513_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	2.7e-200	98.2
WP_000052560.1\|4177516_4178149_-	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	1.4e-66	58.6
WP_000102106.1\|4178265_4178508_+	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	2.3e-38	98.8
WP_000460852.1\|4178540_4179050_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.3e-83	94.1
WP_000956167.1\|4179057_4179258_+	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	4.6e-32	97.0
WP_000963479.1\|4179221_4179563_+	DUF5347 domain-containing protein	A0A1S6L019	Salmonella_phage	4.6e-56	99.1
WP_001244240.1\|4179630_4179864_+	DUF2732 domain-containing protein	A0A1S6L021	Salmonella_phage	9.8e-26	84.4
WP_000785510.1\|4179863_4180091_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	1.0e-35	94.7
WP_001090717.1\|4180087_4180672_+	3'-5' exonuclease	A0A1S6L012	Salmonella_phage	1.1e-76	73.7
WP_000104130.1\|4180668_4181529_+	DNA adenine methylase	E5G6L8	Salmonella_phage	3.4e-132	81.8
WP_001154438.1\|4184082_4184271_+	hypothetical protein	A0A1S6L006	Salmonella_phage	7.9e-26	96.8
WP_001217561.1\|4184282_4184516_+	DinI family protein	A0A1S6L014	Salmonella_phage	2.2e-33	92.2
WP_000835188.1\|4184611_4184830_+	hypothetical protein	NA	NA	NA	NA
WP_000829584.1\|4184839_4185904_+	hypothetical protein	NA	NA	NA	NA
WP_000789323.1\|4185900_4186965_+	hypothetical protein	NA	NA	NA	NA
WP_000080839.1\|4186984_4187680_+	hypothetical protein	NA	NA	NA	NA
WP_001681813.1\|4187728_4188772_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	2.1e-176	86.6
WP_001098453.1\|4188771_4190538_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	96.4
WP_000216272.1\|4190680_4191514_+\|capsid	GPO family capsid scaffolding protein	E5G6M5	Salmonella_phage	6.1e-126	87.4
WP_000730751.1\|4191530_4192595_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	1.3e-194	98.3
WP_000059175.1\|4192598_4193249_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	2.4e-114	99.5
WP_000673540.1\|4193342_4193807_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	2.4e-84	98.1
WP_000868184.1\|4193806_4194010_+\|tail	tail protein X	E5G6M9	Salmonella_phage	3.8e-34	100.0
WP_000171566.1\|4194013_4194229_+	hypothetical protein	E5G6N0	Salmonella_phage	3.8e-32	98.6
WP_001097942.1\|4194209_4194719_+	lysozyme	A0A1S6KZY9	Salmonella_phage	1.3e-91	97.0
WP_000731034.1\|4194723_4195101_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	1.5e-60	99.2
4194869:4194884	attR	NA	NA	NA	NA
WP_001772475.1\|4195100_4195526_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	2.5e-67	97.9
WP_001039966.1\|4195621_4196053_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	2.5e-75	98.6
WP_000343944.1\|4196045_4196492_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.2e-66	90.4
WP_000993749.1\|4196560_4197139_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	3.9e-108	99.5
WP_000177408.1\|4197135_4197495_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	6.8e-58	96.6
WP_000268327.1\|4197481_4198390_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	5.2e-155	97.0
WP_001086816.1\|4198382_4198988_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	2.0e-110	92.0
WP_000104806.1\|4198984_4200604_+\|tail	phage tail protein	E5G6P0	Salmonella_phage	2.7e-154	90.9
WP_000006337.1\|4200610_4201018_+\|tail	tail assembly protein	A0A1B0V844	Salmonella_phage	4.1e-59	84.2
WP_000161708.1\|4201215_4201938_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA
WP_000388790.1\|4202151_4202370_+	Hin recombinase	A0A1S6L009	Salmonella_phage	1.4e-29	90.3
WP_000046101.1\|4202472_4203645_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	9.8e-223	99.5
WP_001207653.1\|4203654_4204170_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	2.7e-92	99.4
WP_001280965.1\|4204224_4204527_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	3.3e-42	93.9
WP_000763315.1\|4204541_4204661_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	1.2e-14	94.9
WP_001282813.1\|4204653_4207434_+\|tail	phage tail tape measure protein	A0A2H4JGB2	uncultured_Caudovirales_phage	3.5e-125	41.1
WP_000980405.1\|4207433_4207919_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	9.4e-71	93.2
WP_001011750.1\|4207915_4209016_+	phage late control D family protein	E5G6Q3	Salmonella_phage	7.9e-190	92.1
WP_001775272.1\|4209083_4209302_+	positive regulator of late gene transcription	E5G6Q4	Salmonella_phage	4.9e-27	75.0
WP_001039750.1\|4209388_4209766_-	hypothetical protein	NA	NA	NA	NA
WP_000457555.1\|4209985_4211260_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	7.5e-152	62.0
WP_001222413.1\|4211391_4211661_+	hypothetical protein	NA	NA	NA	NA
WP_010989298.1\|4211760_4212120_-	DUF3085 domain-containing protein	NA	NA	NA	NA
WP_000022216.1\|4212161_4213061_-	hypothetical protein	NA	NA	NA	NA
WP_000881183.1\|4213134_4214043_-	hypothetical protein	NA	NA	NA	NA
WP_001097965.1\|4214114_4216064_-	DUF1738 domain-containing protein	A0A2K9V411	Faecalibacterium_phage	5.9e-31	38.3

DBSCAN-SWA_14

4665696 : 4703754

Salmonella_phage(76.74%)

plate,tail,integrase,portal,transposase,terminase,capsid,lysis,head

attL 4660660:4660674|attR 4672826:4672840

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4660660:4660674	attL	NA	NA	NA	NA
WP_001012560.1\|4665696_4667343_-	acetolactate synthase 2 catalytic subunit	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	9.0e-65	31.5
WP_001311244.1\|4667482_4667581_-	ilv operon leader peptide	NA	NA	NA	NA
WP_000290950.1\|4668206_4669259_-\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	3.6e-107	57.3
WP_000900883.1\|4669447_4669639_-	hypothetical protein	A0A0R6PIH8	Moraxella_phage	6.8e-09	65.9
WP_001047327.1\|4669654_4670224_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	2.5e-38	43.4
WP_001247706.1\|4670349_4670571_+	hypothetical protein	NA	NA	NA	NA
WP_000460893.1\|4670603_4671113_+	phage regulatory CII family protein	E5G6L3	Salmonella_phage	5.8e-87	98.8
WP_000956176.1\|4671120_4671417_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	4.9e-22	90.4
WP_000996717.1\|4671534_4671876_+	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	1.7e-55	98.2
WP_001244218.1\|4671943_4672177_+	DUF2732 domain-containing protein	E5G6L6	Salmonella_phage	2.0e-31	94.8
WP_000752613.1\|4672176_4672404_+	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	2.7e-36	100.0
WP_000104152.1\|4672400_4673258_+	DNA adenine methylase	E5G6L8	Salmonella_phage	3.5e-161	97.2
4672826:4672840	attR	NA	NA	NA	NA
WP_000017503.1\|4673254_4675669_+	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.5
WP_001580533.1\|4675822_4676011_+	hypothetical protein	E5G6M0	Salmonella_phage	7.9e-26	95.2
WP_000822803.1\|4676078_4676378_-	hypothetical protein	NA	NA	NA	NA
WP_001251692.1\|4676486_4677365_-	hypothetical protein	A0A2H4J8D6	uncultured_Caudovirales_phage	6.1e-52	49.4
WP_001146827.1\|4677978_4678893_+	hypothetical protein	NA	NA	NA	NA
WP_000185757.1\|4678889_4679630_+	restriction endonuclease	NA	NA	NA	NA
WP_000518064.1\|4679664_4680702_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	1.3e-173	89.5
WP_001098422.1\|4680701_4682468_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.5
WP_000216244.1\|4682610_4683444_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	1.5e-121	90.6
WP_000742518.1\|4683460_4684519_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.4e-180	93.1
WP_000059191.1\|4684522_4685173_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
WP_000673504.1\|4685268_4685733_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.4e-76	89.0
WP_000868175.1\|4685732_4685936_+\|tail	tail protein X	E5G6M9	Salmonella_phage	1.4e-31	92.5
WP_000171568.1\|4685939_4686155_+	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
WP_001341072.1\|4686174_4686648_+	lysozyme	E5G6N1	Salmonella_phage	3.7e-80	91.0
WP_000727853.1\|4686649_4687027_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.3e-16	40.0
WP_001080928.1\|4687023_4687452_+\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	2.2e-47	77.3
WP_001039939.1\|4687547_4687979_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.5e-72	95.1
WP_000829146.1\|4687971_4688418_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	6.6e-63	85.6
WP_000993754.1\|4688486_4689065_+\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	5.5e-94	86.5
WP_000177595.1\|4689061_4689421_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	6.1e-51	84.9
WP_000268271.1\|4689407_4690316_+\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	1.3e-142	89.7
WP_001086816.1\|4690308_4690914_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	2.0e-110	92.0
WP_048667453.1\|4690910_4692317_+\|tail	phage tail protein	M1TAS6	Escherichia_phage	5.2e-154	75.3
WP_001174915.1\|4692319_4692760_+\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	3.1e-52	68.0
WP_000805568.1\|4692731_4693325_-\|tail	tail assembly protein	M1SV83	Escherichia_phage	9.2e-60	64.3
WP_031625033.1\|4693324_4693828_-\|tail	tail fiber protein	Q9MCR6	Enterobacteria_phage	2.1e-57	71.3
WP_000905046.1\|4693858_4694425_+	recombinase family protein	A0A0F7LA37	Escherichia_phage	1.1e-86	86.3
WP_000046142.1\|4694567_4695740_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.5e-204	90.3
WP_001207656.1\|4695749_4696265_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	5.6e-90	95.9
WP_001280897.1\|4696319_4696622_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	7.0e-40	89.0
WP_000763311.1\|4696636_4696756_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
WP_001282793.1\|4696748_4699826_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	63.0
WP_000980381.1\|4699822_4700308_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	2.4e-66	80.0
WP_001011760.1\|4700304_4701405_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	1.0e-176	88.3
WP_000972391.1\|4701495_4701714_+	transcriptional activator Ogr/delta	Q53ZE7	Salmonella_virus	7.5e-20	69.0
WP_000502114.1\|4703295_4703754_+\|transposase	IS200/IS605 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LT883154

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_LT883153

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection