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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP012120 Staphylococcus aureus subsp. aureus strain USA300_2014.C02 chromosome, complete genome 9 crisprs cas3,WYL,csa3,DEDDh,DinG 10 3 10 0
NZ_CP012121 Staphylococcus aureus subsp. aureus strain USA300_2014.C02 plasmid pC02, complete sequence 0 crisprs csa3 0 0 1 1
NZ_CP025489 Staphylococcus aureus subsp. aureus strain USA300_2014.C02 plasmid pC02a, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP012120
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012120_1 425823-426131 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012120_2 474880-474961 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012120_3 510849-510941 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012120_4 693953-694045 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012120_5 938285-938386 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012120_6 1414286-1414459 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012120_7 1855545-1855738 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012120_8 1979506-1979656 Orphan NA
2 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012120_9 2214528-2214606 Orphan NA
1 spacers
DEDDh

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP012120_2 2.1|474904|34|NZ_CP012120|CRISPRCasFinder 474904-474937 34 NZ_CP012120.2 2774924-2774957 0 1.0
NZ_CP012120_2 2.1|474904|34|NZ_CP012120|CRISPRCasFinder 474904-474937 34 NZ_CP012120.2 2864116-2864149 0 1.0
NZ_CP012120_6 6.1|1414339|17|NZ_CP012120|PILER-CR 1414339-1414355 17 NZ_CP012120.2 523574-523590 0 1.0
NZ_CP012120_6 6.1|1414339|17|NZ_CP012120|PILER-CR 1414339-1414355 17 NZ_CP012120.2 523629-523645 0 1.0
NZ_CP012120_6 6.1|1414339|17|NZ_CP012120|PILER-CR 1414339-1414355 17 NZ_CP012120.2 1058782-1058798 0 1.0
NZ_CP012120_6 6.2|1414409|16|NZ_CP012120|PILER-CR 1414409-1414424 16 NZ_CP012120.2 208070-208085 0 1.0
NZ_CP012120_6 6.2|1414409|16|NZ_CP012120|PILER-CR 1414409-1414424 16 NZ_CP012120.2 308698-308713 0 1.0
NZ_CP012120_6 6.2|1414409|16|NZ_CP012120|PILER-CR 1414409-1414424 16 NZ_CP012120.2 474607-474622 0 1.0
NZ_CP012120_6 6.2|1414409|16|NZ_CP012120|PILER-CR 1414409-1414424 16 NZ_CP012120.2 518210-518225 0 1.0
NZ_CP012120_6 6.2|1414409|16|NZ_CP012120|PILER-CR 1414409-1414424 16 NZ_CP012120.2 977007-977022 0 1.0
NZ_CP012120_6 6.2|1414409|16|NZ_CP012120|PILER-CR 1414409-1414424 16 NZ_CP012120.2 1579760-1579775 0 1.0
NZ_CP012120_6 6.2|1414409|16|NZ_CP012120|PILER-CR 1414409-1414424 16 NZ_CP012120.2 2203646-2203661 0 1.0
NZ_CP012120_6 6.2|1414409|16|NZ_CP012120|PILER-CR 1414409-1414424 16 NZ_CP012120.2 2203704-2203719 0 1.0
NZ_CP012120_6 6.2|1414409|16|NZ_CP012120|PILER-CR 1414409-1414424 16 NZ_CP012120.2 2774896-2774911 0 1.0
NZ_CP012120_6 6.2|1414409|16|NZ_CP012120|PILER-CR 1414409-1414424 16 NZ_CP012120.2 2859765-2859780 0 1.0
NZ_CP012120_6 6.2|1414409|16|NZ_CP012120|PILER-CR 1414409-1414424 16 NZ_CP012120.2 2864162-2864177 0 1.0
NZ_CP012120_7 7.2|1855624|36|NZ_CP012120|CRT 1855624-1855659 36 NZ_CP012120.2 208123-208158 0 1.0
NZ_CP012120_1 1.4|426050|26|NZ_CP012120|CRT 426050-426075 26 NZ_CP012120.2 518180-518205 1 0.962
NZ_CP012120_6 6.2|1414409|16|NZ_CP012120|PILER-CR 1414409-1414424 16 NZ_CP012120.2 212038-212053 1 0.938
NZ_CP012120_6 6.2|1414409|16|NZ_CP012120|PILER-CR 1414409-1414424 16 NZ_CP012120.2 1766366-1766381 1 0.938
NZ_CP012120_6 6.2|1414409|16|NZ_CP012120|PILER-CR 1414409-1414424 16 NZ_CP012120.2 2371083-2371098 1 0.938
NZ_CP012120_6 6.2|1414409|16|NZ_CP012120|PILER-CR 1414409-1414424 16 NZ_CP012120.2 2549663-2549678 1 0.938
NZ_CP012120_6 6.2|1414409|16|NZ_CP012120|PILER-CR 1414409-1414424 16 NZ_CP012120.2 2818109-2818124 1 0.938
NZ_CP012120_7 7.2|1855624|36|NZ_CP012120|CRT 1855624-1855659 36 NZ_CP012120.2 2371194-2371229 1 0.972
NZ_CP012120_9 9.1|2214551|33|NZ_CP012120|CRISPRCasFinder 2214551-2214583 33 NZ_CP012120.2 208070-208102 1 0.97
NZ_CP012120_9 9.1|2214551|33|NZ_CP012120|CRISPRCasFinder 2214551-2214583 33 NZ_CP012120.2 1579743-1579775 1 0.97
NZ_CP012120_9 9.1|2214551|33|NZ_CP012120|CRISPRCasFinder 2214551-2214583 33 NZ_CP012120.2 2549646-2549678 1 0.97
NZ_CP012120_9 9.1|2214551|33|NZ_CP012120|CRISPRCasFinder 2214551-2214583 33 NZ_CP012120.2 2864162-2864194 1 0.97
NZ_CP012120_1 1.2|425936|26|NZ_CP012120|CRT 425936-425961 26 NZ_CP012120.2 977027-977052 2 0.923
NZ_CP012120_1 1.4|426050|26|NZ_CP012120|CRT 426050-426075 26 NZ_CP012120.2 555243-555268 2 0.923
NZ_CP012120_1 1.5|426076|33|NZ_CP012120|CRISPRCasFinder 426076-426108 33 NZ_CP012120.2 474600-474632 2 0.939
NZ_CP012120_6 6.1|1414339|17|NZ_CP012120|PILER-CR 1414339-1414355 17 NZ_CP012121.2 22510-22526 2 0.882
NZ_CP012120_6 6.1|1414339|17|NZ_CP012120|PILER-CR 1414339-1414355 17 NZ_CP012121.2 23696-23712 2 0.882
NZ_CP012120_6 6.1|1414339|17|NZ_CP012120|PILER-CR 1414339-1414355 17 NZ_CP012121.2 24506-24522 2 0.882
NZ_CP012120_6 6.1|1414339|17|NZ_CP012120|PILER-CR 1414339-1414355 17 NZ_CP012121.2 35042-35058 2 0.882
NZ_CP012120_7 7.1|1855568|33|NZ_CP012120|CRT 1855568-1855600 33 NZ_CP012120.2 208070-208102 2 0.939
NZ_CP012120_7 7.1|1855568|33|NZ_CP012120|CRT 1855568-1855600 33 NZ_CP012120.2 518193-518225 2 0.939
NZ_CP012120_7 7.1|1855568|33|NZ_CP012120|CRT 1855568-1855600 33 NZ_CP012120.2 1579743-1579775 2 0.939
NZ_CP012120_7 7.1|1855568|33|NZ_CP012120|CRT 1855568-1855600 33 NZ_CP012120.2 2864162-2864194 2 0.939
NZ_CP012120_7 7.2|1855624|36|NZ_CP012120|CRT 1855624-1855659 36 NZ_CP012120.2 2203745-2203780 2 0.944
NZ_CP012120_7 7.2|1855624|36|NZ_CP012120|CRT 1855624-1855659 36 NZ_CP012120.2 2549704-2549739 2 0.944
NZ_CP012120_7 7.3|1855683|33|NZ_CP012120|CRT 1855683-1855715 33 NZ_CP012120.2 208070-208102 2 0.939
NZ_CP012120_7 7.3|1855683|33|NZ_CP012120|CRT 1855683-1855715 33 NZ_CP012120.2 1579743-1579775 2 0.939
NZ_CP012120_7 7.3|1855683|33|NZ_CP012120|CRT 1855683-1855715 33 NZ_CP012120.2 2774879-2774911 2 0.939
NZ_CP012120_7 7.3|1855683|33|NZ_CP012120|CRT 1855683-1855715 33 NZ_CP012120.2 2864162-2864194 2 0.939
NZ_CP012120_9 9.1|2214551|33|NZ_CP012120|CRISPRCasFinder 2214551-2214583 33 NZ_CP012120.2 2774879-2774911 2 0.939

1. spacer 2.1|474904|34|NZ_CP012120|CRISPRCasFinder matches to position: 2774924-2774957, mismatch: 0, identity: 1.0

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
**********************************

2. spacer 2.1|474904|34|NZ_CP012120|CRISPRCasFinder matches to position: 2864116-2864149, mismatch: 0, identity: 1.0

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
**********************************

3. spacer 6.1|1414339|17|NZ_CP012120|PILER-CR matches to position: 523574-523590, mismatch: 0, identity: 1.0

aagaatttcgaaaagaa	CRISPR spacer
aagaatttcgaaaagaa	Protospacer
*****************

4. spacer 6.1|1414339|17|NZ_CP012120|PILER-CR matches to position: 523629-523645, mismatch: 0, identity: 1.0

aagaatttcgaaaagaa	CRISPR spacer
aagaatttcgaaaagaa	Protospacer
*****************

5. spacer 6.1|1414339|17|NZ_CP012120|PILER-CR matches to position: 1058782-1058798, mismatch: 0, identity: 1.0

aagaatttcgaaaagaa	CRISPR spacer
aagaatttcgaaaagaa	Protospacer
*****************

6. spacer 6.2|1414409|16|NZ_CP012120|PILER-CR matches to position: 208070-208085, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

7. spacer 6.2|1414409|16|NZ_CP012120|PILER-CR matches to position: 308698-308713, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

8. spacer 6.2|1414409|16|NZ_CP012120|PILER-CR matches to position: 474607-474622, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

9. spacer 6.2|1414409|16|NZ_CP012120|PILER-CR matches to position: 518210-518225, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

10. spacer 6.2|1414409|16|NZ_CP012120|PILER-CR matches to position: 977007-977022, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

11. spacer 6.2|1414409|16|NZ_CP012120|PILER-CR matches to position: 1579760-1579775, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

12. spacer 6.2|1414409|16|NZ_CP012120|PILER-CR matches to position: 2203646-2203661, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

13. spacer 6.2|1414409|16|NZ_CP012120|PILER-CR matches to position: 2203704-2203719, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

14. spacer 6.2|1414409|16|NZ_CP012120|PILER-CR matches to position: 2774896-2774911, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

15. spacer 6.2|1414409|16|NZ_CP012120|PILER-CR matches to position: 2859765-2859780, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

16. spacer 6.2|1414409|16|NZ_CP012120|PILER-CR matches to position: 2864162-2864177, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

17. spacer 7.2|1855624|36|NZ_CP012120|CRT matches to position: 208123-208158, mismatch: 0, identity: 1.0

tagagaatttcaaaaagaaattctacagacaatgca	CRISPR spacer
tagagaatttcaaaaagaaattctacagacaatgca	Protospacer
************************************

18. spacer 1.4|426050|26|NZ_CP012120|CRT matches to position: 518180-518205, mismatch: 1, identity: 0.962

ccgccagcctctgtgttggggccccg	CRISPR spacer
ccgccagcttctgtgttggggccccg	Protospacer
********.*****************

19. spacer 6.2|1414409|16|NZ_CP012120|PILER-CR matches to position: 212038-212053, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagcttacaaaaatg	Protospacer
*********** ****

20. spacer 6.2|1414409|16|NZ_CP012120|PILER-CR matches to position: 1766366-1766381, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagcttacaacaatg	Protospacer
***********.****

21. spacer 6.2|1414409|16|NZ_CP012120|PILER-CR matches to position: 2371083-2371098, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagctttcaataatg	Protospacer
******* ********

22. spacer 6.2|1414409|16|NZ_CP012120|PILER-CR matches to position: 2549663-2549678, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagcttactataatg	Protospacer
********* ******

23. spacer 6.2|1414409|16|NZ_CP012120|PILER-CR matches to position: 2818109-2818124, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagcttacaacaatg	Protospacer
***********.****

24. spacer 7.2|1855624|36|NZ_CP012120|CRT matches to position: 2371194-2371229, mismatch: 1, identity: 0.972

tagagaatttcaaaaagaaattctacagacaatgca	CRISPR spacer
tagagaatttcgaaaagaaattctacagacaatgca	Protospacer
***********.************************

25. spacer 9.1|2214551|33|NZ_CP012120|CRISPRCasFinder matches to position: 208070-208102, mismatch: 1, identity: 0.97

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
**************************.******

26. spacer 9.1|2214551|33|NZ_CP012120|CRISPRCasFinder matches to position: 1579743-1579775, mismatch: 1, identity: 0.97

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
**************************.******

27. spacer 9.1|2214551|33|NZ_CP012120|CRISPRCasFinder matches to position: 2549646-2549678, mismatch: 1, identity: 0.97

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttactataatg	Protospacer
************************** ******

28. spacer 9.1|2214551|33|NZ_CP012120|CRISPRCasFinder matches to position: 2864162-2864194, mismatch: 1, identity: 0.97

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
**************************.******

29. spacer 1.2|425936|26|NZ_CP012120|CRT matches to position: 977027-977052, mismatch: 2, identity: 0.923

tcgccagcttctgtgttggggccccg	CRISPR spacer
tcgtcagcttctttgttggggccccg	Protospacer
***.******** *************

30. spacer 1.4|426050|26|NZ_CP012120|CRT matches to position: 555243-555268, mismatch: 2, identity: 0.923

ccgccagcctctgtgttggggccccg	CRISPR spacer
ccgcctgcttctgtgttggggccccg	Protospacer
***** **.*****************

31. spacer 1.5|426076|33|NZ_CP012120|CRISPRCasFinder matches to position: 474600-474632, mismatch: 2, identity: 0.939

ccaacttgcacactattgtaagctgactttcca	CRISPR spacer
ccaacttgcacattattgtaagctgacttacca	Protospacer
************.**************** ***

32. spacer 6.1|1414339|17|NZ_CP012120|PILER-CR matches to position: 22510-22526, mismatch: 2, identity: 0.882

aagaatttcgaaaagaa	CRISPR spacer
aataatttctaaaagaa	Protospacer
** ****** *******

33. spacer 6.1|1414339|17|NZ_CP012120|PILER-CR matches to position: 23696-23712, mismatch: 2, identity: 0.882

aagaatttcgaaaagaa	CRISPR spacer
aataatttctaaaagaa	Protospacer
** ****** *******

34. spacer 6.1|1414339|17|NZ_CP012120|PILER-CR matches to position: 24506-24522, mismatch: 2, identity: 0.882

aagaatttcgaaaagaa	CRISPR spacer
aataatttctaaaagaa	Protospacer
** ****** *******

35. spacer 6.1|1414339|17|NZ_CP012120|PILER-CR matches to position: 35042-35058, mismatch: 2, identity: 0.882

aagaatttcgaaaagaa	CRISPR spacer
aagaattttcaaaagaa	Protospacer
********. *******

36. spacer 7.1|1855568|33|NZ_CP012120|CRT matches to position: 208070-208102, mismatch: 2, identity: 0.939

cagaagctgacagaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
***********..********************

37. spacer 7.1|1855568|33|NZ_CP012120|CRT matches to position: 518193-518225, mismatch: 2, identity: 0.939

cagaagctgacagaaagtcagcttacaataatg	CRISPR spacer
cagaagctggcggaaagtcagcttacaataatg	Protospacer
*********.*.*********************

38. spacer 7.1|1855568|33|NZ_CP012120|CRT matches to position: 1579743-1579775, mismatch: 2, identity: 0.939

cagaagctgacagaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
***********..********************

39. spacer 7.1|1855568|33|NZ_CP012120|CRT matches to position: 2864162-2864194, mismatch: 2, identity: 0.939

cagaagctgacagaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
***********..********************

40. spacer 7.2|1855624|36|NZ_CP012120|CRT matches to position: 2203745-2203780, mismatch: 2, identity: 0.944

tagagaatttcaaaaagaaattctacagacaatgca	CRISPR spacer
tagagaatttcgaaaggaaattctacagacaatgca	Protospacer
***********.***.********************

41. spacer 7.2|1855624|36|NZ_CP012120|CRT matches to position: 2549704-2549739, mismatch: 2, identity: 0.944

tagagaatttcaaaaagaaattctacagacaatgca	CRISPR spacer
tagagaatttcgaaaagaaattctacaggcaatgca	Protospacer
***********.****************.*******

42. spacer 7.3|1855683|33|NZ_CP012120|CRT matches to position: 208070-208102, mismatch: 2, identity: 0.939

cagaaggtgacgaaaagtcagcatacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
****** *************** **********

43. spacer 7.3|1855683|33|NZ_CP012120|CRT matches to position: 1579743-1579775, mismatch: 2, identity: 0.939

cagaaggtgacgaaaagtcagcatacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
****** *************** **********

44. spacer 7.3|1855683|33|NZ_CP012120|CRT matches to position: 2774879-2774911, mismatch: 2, identity: 0.939

cagaaggtgacgaaaagtcagcatacaataatg	CRISPR spacer
cagaagatgacgaaaagtcagcttacaataatg	Protospacer
******.*************** **********

45. spacer 7.3|1855683|33|NZ_CP012120|CRT matches to position: 2864162-2864194, mismatch: 2, identity: 0.939

cagaaggtgacgaaaagtcagcatacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
****** *************** **********

46. spacer 9.1|2214551|33|NZ_CP012120|CRISPRCasFinder matches to position: 2774879-2774911, mismatch: 2, identity: 0.939

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagatgacgaaaagtcagcttacaataatg	Protospacer
****** *******************.******

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP012120_1 1.1|425853|53|NZ_CP012120|CRT 425853-425905 53 MG543995 Staphylococcus phage UPMK_1, partial genome 76246-76298 4 0.925
NZ_CP012120_1 1.2|425936|26|NZ_CP012120|CRT 425936-425961 26 NZ_CP022541 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence 333735-333760 5 0.808
NZ_CP012120_9 9.1|2214551|33|NZ_CP012120|CRISPRCasFinder 2214551-2214583 33 NC_021536 Synechococcus phage S-IOM18 genomic sequence 159745-159777 10 0.697

1. spacer 1.1|425853|53|NZ_CP012120|CRT matches to MG543995 (Staphylococcus phage UPMK_1, partial genome) position: , mismatch: 4, identity: 0.925

ttgggagtgggacagaaatgatattttcgcaaaatttatttcgtcgtcccacc	CRISPR spacer
aagggagtgggacagaaatgatagtttctcaaaatttatttcgtcgtcccacc	Protospacer
  ********************* **** ************************

2. spacer 1.2|425936|26|NZ_CP012120|CRT matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

tcgccagcttctgtgttggggccccg	CRISPR spacer
acgccagcttctgtgttgaggcctta	Protospacer
 *****************.****...

3. spacer 9.1|2214551|33|NZ_CP012120|CRISPRCasFinder matches to NC_021536 (Synechococcus phage S-IOM18 genomic sequence) position: , mismatch: 10, identity: 0.697

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
aggtgcttgacgaaaactcaccttacgataaaa	Protospacer
 .* . .********* *** ********** .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 298735 : 307208 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_2 327194 : 374778 48 Enterococcus_phage(20.0%) bacteriocin,protease NA
DBSCAN-SWA_3 552053 : 566784 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_4 578756 : 586576 10 Pandoravirus(16.67%) NA NA
DBSCAN-SWA_5 2101444 : 2189090 112 Staphylococcus_phage(92.31%) holin,protease,terminase,integrase,head,capsid,portal,tail attL 2115311:2115328|attR 2140242:2140259
DBSCAN-SWA_6 2249061 : 2350276 98 Staphylococcus_phage(89.29%) tRNA,transposase,protease NA
DBSCAN-SWA_7 2353436 : 2366165 6 Staphylococcus_phage(100.0%) tRNA NA
DBSCAN-SWA_8 2491623 : 2500666 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_9 2569803 : 2578115 7 Caulobacter_phage(16.67%) tRNA NA
DBSCAN-SWA_10 2638933 : 2721184 103 Staphylococcus_phage(85.33%) holin,protease,terminase,tRNA,integrase,head,capsid,portal,tail,plate attL 2638909:2638929|attR 2684802:2684822
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP012121
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 22899 : 31319 9 Staphylococcus_phage(71.43%) transposase NA
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP012121.2|WP_042856804.1|23431_23677_-|hypothetical-protein 23431_23677_- 81 aa aa NA NA NA 22899-31319 yes