CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP016542	Planococcus versutus strain L10.15 plasmid pPS15-2, complete sequence	0 crisprs	NA	0
NZ_CP016540	Planococcus versutus strain L10.15 chromosome, complete genome	0 crisprs	cas3,csa3,DinG,DEDDh	5
NZ_CP016541	Planococcus versutus strain L10.15 plasmid pPS15-1, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

880103 : 888305

Synechococcus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_049695144.1\|880103_881399_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	6.1e-16	31.1
WP_049695145.1\|881415_882132_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A1D7SCX8	Cyanophage	1.3e-44	41.9
WP_049695146.1\|882128_882383_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_049695147.1\|882379_883063_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_049695148.1\|883046_885272_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	2.3e-164	41.4
WP_049695168.1\|885247_886669_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.8e-53	33.5
WP_049695149.1\|886681_887743_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	1.9e-60	42.8
WP_049695150.1\|887732_888305_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	9.5e-22	33.7

DBSCAN-SWA_2

1167116 : 1172836

Staphylococcus_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065524393.1\|1167116_1167347_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	1.5e-21	63.4
WP_065524897.1\|1167454_1167901_+	DNA starvation/stationary phase protection protein	A0A0A7RTZ1	Clostridium_phage	1.4e-44	61.6
WP_065524392.1\|1167964_1168423_+	NUDIX domain-containing protein	A0A2H4PQM4	Staphylococcus_phage	3.7e-16	36.2
WP_065524391.1\|1168403_1169183_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	1.6e-35	36.9
WP_065524390.1\|1169354_1170944_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	3.4e-186	61.8
WP_065524389.1\|1171639_1172836_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	2.1e-159	75.4

DBSCAN-SWA_3

1615274 : 1658572

Bacillus_phage(19.35%)

integrase,capsid,terminase,head,portal,tail,holin,transposase

attL 1606561:1606576|attR 1621839:1621854

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1606561:1606576	attL	NA	NA	NA	NA
WP_065524821.1\|1615274_1616126_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_065524820.1\|1616415_1616958_+	cysteine hydrolase	NA	NA	NA	NA
WP_065524819.1\|1617047_1617302_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_065524818.1\|1617350_1617989_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_065524817.1\|1618143_1618533_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_065524816.1\|1618667_1619225_-	SCO family protein	NA	NA	NA	NA
WP_071645356.1\|1619319_1619448_-	YvrJ family protein	NA	NA	NA	NA
WP_065524815.1\|1619585_1619801_-	DUF2922 domain-containing protein	NA	NA	NA	NA
WP_065524814.1\|1620423_1621455_-	peptidoglycan DD-metalloendopeptidase family protein	V5R8R0	Arthrobacter_phage	5.6e-12	39.8
WP_065524813.1\|1621456_1621726_-\|holin	holin	A0A0U4JE55	Bacillus_phage	6.9e-15	48.8
WP_065524812.1\|1621728_1622241_-\|holin	phage holin family protein	A0A0A7S099	Clostridium_phage	1.4e-11	38.3
1621839:1621854	attR	NA	NA	NA	NA
WP_157886496.1\|1622404_1622572_-	hypothetical protein	NA	NA	NA	NA
WP_065524811.1\|1622587_1623559_-	hypothetical protein	NA	NA	NA	NA
WP_065524810.1\|1623745_1625965_-	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_065524809.1\|1625957_1626170_-	hypothetical protein	NA	NA	NA	NA
WP_065524808.1\|1626172_1628032_-	hypothetical protein	A0A2P1JTV8	Anoxybacillus_phage	1.9e-63	36.6
WP_065524807.1\|1628044_1628866_-	hypothetical protein	A0A0U4B037	Exiguobacterium_phage	1.6e-25	31.2
WP_065524806.1\|1628877_1632261_-	hypothetical protein	A0A0E3XC73	Staphylococcus_phage	5.1e-38	26.1
WP_065524805.1\|1632265_1632598_-	hypothetical protein	NA	NA	NA	NA
WP_065524804.1\|1632609_1633074_-	hypothetical protein	NA	NA	NA	NA
WP_065524803.1\|1633146_1633656_-\|tail	phage major tail protein, TP901-1 family	Q0PDK9	Bacillus_phage	2.0e-26	42.1
WP_065524802.1\|1633671_1634076_-	DUF3168 domain-containing protein	A0A0C5AEH4	Paenibacillus_phage	4.8e-12	43.3
WP_065524801.1\|1634076_1634499_-	HK97 gp10 family phage protein	A0A0E3XCY8	Staphylococcus_phage	4.3e-27	46.6
WP_065524800.1\|1634498_1634831_-\|head	phage head closure protein	NA	NA	NA	NA
WP_065524799.1\|1634817_1635174_-	hypothetical protein	M9NST9	Staphylococcus_phage	1.7e-08	35.7
WP_065524798.1\|1635183_1635465_-	hypothetical protein	NA	NA	NA	NA
WP_065524797.1\|1635493_1636465_-\|capsid	phage major capsid protein	M9NTC2	Staphylococcus_phage	3.2e-94	57.8
WP_083553685.1\|1636468_1636918_-	DUF4355 domain-containing protein	A0A1L2K2N1	Aeribacillus_phage	1.2e-11	40.9
WP_065524795.1\|1637115_1637367_-	hypothetical protein	Q5YA72	Bacillus_phage	2.2e-15	51.9
WP_065524794.1\|1637381_1637567_-	hypothetical protein	NA	NA	NA	NA
WP_065524793.1\|1637711_1638992_-	hypothetical protein	A0A1Q1PVS0	Bacillus_phage	2.8e-13	26.4
WP_083553744.1\|1638988_1640506_-\|portal	phage portal protein	A0A2H4J4Q7	uncultured_Caudovirales_phage	3.4e-143	59.3
WP_065524792.1\|1640515_1641715_-\|terminase	PBSX family phage terminase large subunit	A0A2H4J8B0	uncultured_Caudovirales_phage	4.9e-169	70.3
WP_065524791.1\|1641689_1642496_-\|terminase	terminase small subunit	Q5YA77	Bacillus_phage	8.6e-61	54.3
WP_065524790.1\|1642583_1643207_-	HNH endonuclease	A0A0P0HRI2	Lactobacillus_phage	9.4e-31	43.8
WP_065524789.1\|1643496_1643922_-	hypothetical protein	A0A290FZR5	Caldibacillus_phage	8.6e-36	54.3
WP_065524788.1\|1643933_1644125_-	hypothetical protein	NA	NA	NA	NA
WP_065524787.1\|1644138_1644504_-	hypothetical protein	NA	NA	NA	NA
WP_065524786.1\|1644590_1645253_-	hypothetical protein	NA	NA	NA	NA
WP_083553745.1\|1645249_1645441_-	hypothetical protein	A0A1L2JY31	Aeribacillus_phage	8.9e-09	57.7
WP_065524784.1\|1645459_1645678_-	hypothetical protein	NA	NA	NA	NA
WP_065524783.1\|1645697_1646117_-	RusA family crossover junction endodeoxyribonuclease	S6B1L9	Thermus_phage	4.7e-34	53.7
WP_065524782.1\|1646368_1646602_-	hypothetical protein	NA	NA	NA	NA
WP_065524781.1\|1646603_1647143_-	hypothetical protein	A0A290GJJ6	Caldibacillus_phage	5.2e-38	45.3
WP_157886497.1\|1647162_1647303_-	hypothetical protein	NA	NA	NA	NA
WP_065524780.1\|1647320_1647662_-	DUF1140 family protein	A0A2H4JAB4	uncultured_Caudovirales_phage	2.6e-06	36.8
WP_157886498.1\|1647771_1648915_+\|transposase	IS3 family transposase	A0A2I7SC85	Paenibacillus_phage	9.0e-80	55.1
WP_157886499.1\|1648948_1649122_-	hypothetical protein	NA	NA	NA	NA
WP_065524779.1\|1649158_1649413_-	hypothetical protein	NA	NA	NA	NA
WP_157886501.1\|1649563_1649740_-	hypothetical protein	NA	NA	NA	NA
WP_065524778.1\|1649736_1649916_-	hypothetical protein	NA	NA	NA	NA
WP_071645380.1\|1649927_1650734_-	ATP-binding protein	A0A1B1P8D0	Bacillus_phage	3.9e-69	48.1
WP_065524775.1\|1651620_1652484_-	recombinase RecT	S6AVW6	Thermus_phage	3.3e-66	51.4
WP_065524774.1\|1652497_1653433_-	hypothetical protein	S6C475	Thermus_phage	7.6e-109	61.4
WP_065524773.1\|1653529_1653748_-	hypothetical protein	NA	NA	NA	NA
WP_065524772.1\|1653753_1653987_-	hypothetical protein	NA	NA	NA	NA
WP_065524771.1\|1654241_1654517_-	hypothetical protein	NA	NA	NA	NA
WP_065524770.1\|1654513_1655026_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_083553686.1\|1655114_1655432_-	hypothetical protein	NA	NA	NA	NA
WP_065524769.1\|1655474_1656242_-	Rha family transcriptional regulator	A0A0K2CXT4	Paenibacillus_phage	1.8e-39	39.4
WP_157886502.1\|1656302_1656449_+	hypothetical protein	NA	NA	NA	NA
WP_157886503.1\|1656442_1656586_-	hypothetical protein	NA	NA	NA	NA
WP_065524768.1\|1656724_1656967_+	hypothetical protein	A0A0H3U4W2	Staphylococcus_phage	7.3e-24	62.2
WP_065524765.1\|1657456_1657804_-	hypothetical protein	NA	NA	NA	NA
WP_065524764.1\|1657820_1658069_-	helix-turn-helix transcriptional regulator	A0A2H4J4N8	uncultured_Caudovirales_phage	7.3e-11	57.5
WP_065524763.1\|1658221_1658572_+	helix-turn-helix transcriptional regulator	A0A2H4J6F9	uncultured_Caudovirales_phage	6.4e-21	51.7

DBSCAN-SWA_4

2540803 : 2547320

Enterobacteria_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083553712.1\|2540803_2541142_+\|transposase	transposase	S5VTP8	Leptospira_phage	3.2e-17	47.1
WP_049695191.1\|2541302_2542319_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.9e-77	46.0
WP_049695190.1\|2542318_2543176_-	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	3.9e-35	34.8
WP_049695189.1\|2543176_2543740_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.1e-41	44.7
WP_049695188.1\|2543736_2544639_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.8e-107	67.4
WP_083553713.1\|2544688_2545987_-	oligosaccharide flippase family protein	NA	NA	NA	NA
WP_157886548.1\|2546000_2547320_-	nucleotide sugar dehydrogenase	M1HYW7	Paramecium_bursaria_Chlorella_virus	8.7e-26	26.5

DBSCAN-SWA_5

2868655 : 2877027

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083553755.1\|2868655_2870011_-	HAMP domain-containing histidine kinase	A0A1V0SGX0	Hokovirus	3.5e-22	31.3
WP_049693127.1\|2870039_2870720_-	response regulator transcription factor	W8CYM9	Bacillus_phage	6.4e-41	40.4
WP_083553719.1\|2870842_2871865_-	GTP-binding protein	NA	NA	NA	NA
WP_049693129.1\|2871933_2873751_-	sulfatase-like hydrolase/transferase	W6LM83	Streptococcus_phage	3.7e-27	23.8
WP_049693130.1\|2873916_2874540_+	flavodoxin family protein	NA	NA	NA	NA
WP_049693131.1\|2874589_2875120_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_049693132.1\|2875271_2875736_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	3.8e-45	59.2
WP_083553720.1\|2875759_2876380_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	3.1e-58	56.1
WP_049693133.1\|2876397_2877027_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.9e-40	45.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage