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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP026043 Listeria monocytogenes strain FDAARGOS_58 chromosome, complete genome 1 crisprs cas3,WYL,casR,RT,DEDDh,DinG,csa3 0 0 205 0

Results visualization

1. NZ_CP026043
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026043_1 78223-78377 Unclear NA
1 spacers
cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 5410 8 uncultured_Caudovirales_phage(25.0%) holin,tail NA
DBSCAN-SWA_2 8808 : 10317 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_3 23288 : 23993 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_4 37624 : 45726 7 Streptococcus_phage(25.0%) tRNA NA
DBSCAN-SWA_5 58655 : 59870 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_6 63746 : 66158 3 Klosneuvirus(50.0%) NA NA
DBSCAN-SWA_7 69168 : 71549 2 Acanthamoeba_polyphaga_mimivirus(50.0%) NA NA
DBSCAN-SWA_8 81296 : 81629 1 Rhodobacter_phage(100.0%) NA NA
DBSCAN-SWA_9 92522 : 99728 5 Tupanvirus(33.33%) tRNA,protease NA
DBSCAN-SWA_10 103694 : 105191 1 Catovirus(100.0%) tRNA NA
DBSCAN-SWA_11 118759 : 121222 1 Enterobacteria_phage(100.0%) protease NA
DBSCAN-SWA_12 127646 : 132547 8 Moumouvirus(50.0%) tRNA NA
DBSCAN-SWA_13 136637 : 138956 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_14 146218 : 153549 2 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_15 170184 : 194615 22 Bacillus_phage(27.27%) protease NA
DBSCAN-SWA_16 251498 : 252155 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_17 262244 : 263765 1 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_18 276761 : 277682 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_19 288699 : 292084 5 Equid_alphaherpesvirus(50.0%) NA NA
DBSCAN-SWA_20 297094 : 297769 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_21 312421 : 315025 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_22 319954 : 320254 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_23 366369 : 367317 1 Acidianus_two-tailed_virus(100.0%) NA NA
DBSCAN-SWA_24 394874 : 396533 2 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_25 406852 : 410277 3 Cyanophage(50.0%) NA NA
DBSCAN-SWA_26 414625 : 415561 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_27 448658 : 449852 1 Mycobacterium_virus(100.0%) NA NA
DBSCAN-SWA_28 463312 : 464791 1 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_29 470932 : 471250 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_30 477967 : 480710 3 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_31 486547 : 490147 4 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_32 498848 : 500252 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_33 506199 : 507477 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_34 515628 : 519167 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_35 522802 : 530071 9 Megavirus(25.0%) NA NA
DBSCAN-SWA_36 545525 : 550882 4 Streptococcus_phage(66.67%) NA NA
DBSCAN-SWA_37 560935 : 561643 1 Enterococcus_phage(100.0%) NA NA
DBSCAN-SWA_38 573937 : 576780 3 Anomala_cuprea_entomopoxvirus(50.0%) NA NA
DBSCAN-SWA_39 591308 : 595878 4 Indivirus(33.33%) NA NA
DBSCAN-SWA_40 618021 : 628021 10 Geobacillus_virus(25.0%) NA NA
DBSCAN-SWA_41 633211 : 638796 6 Planktothrix_phage(66.67%) NA NA
DBSCAN-SWA_42 643008 : 643914 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_43 661108 : 662038 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_44 695832 : 696927 1 Mycoplasma_phage(100.0%) NA NA
DBSCAN-SWA_45 702510 : 703695 1 Clostridium_phage(100.0%) NA NA
DBSCAN-SWA_46 711179 : 717369 6 Acanthocystis_turfacea_Chlorella_virus(50.0%) NA NA
DBSCAN-SWA_47 733019 : 734741 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_48 738539 : 741182 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_49 748824 : 753466 4 uncultured_virus(50.0%) NA NA
DBSCAN-SWA_50 769690 : 773379 2 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_51 790762 : 792704 3 Yellowstone_lake_mimivirus(50.0%) NA NA
DBSCAN-SWA_52 796515 : 799731 3 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_53 802814 : 803255 1 Faustovirus(100.0%) NA NA
DBSCAN-SWA_54 808223 : 808721 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_55 822643 : 824215 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_56 827359 : 831869 4 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_57 843593 : 847851 4 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_58 860446 : 861673 1 Phage_TP(100.0%) NA NA
DBSCAN-SWA_59 870405 : 873119 2 Pseudomonas_phage(50.0%) NA NA
DBSCAN-SWA_60 876864 : 877629 1 Anomala_cuprea_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_61 882581 : 889856 7 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_62 892928 : 895592 2 Acanthamoeba_polyphaga_mimivirus(50.0%) protease NA
DBSCAN-SWA_63 910363 : 911557 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_64 927827 : 928652 1 Micromonas_pusilla_virus(100.0%) NA NA
DBSCAN-SWA_65 935683 : 936346 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_66 944120 : 944672 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_67 949350 : 950754 1 Erysipelothrix_phage(100.0%) NA NA
DBSCAN-SWA_68 956070 : 957909 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_69 966957 : 973857 4 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_70 979381 : 980269 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_71 986128 : 993555 9 Hokovirus(28.57%) integrase attL 976040:976053|attR 994134:994147
DBSCAN-SWA_72 1002683 : 1003571 1 Anomala_cuprea_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_73 1018572 : 1021936 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_74 1082884 : 1083691 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_75 1086820 : 1090700 5 Leuconostoc_phage(33.33%) NA NA
DBSCAN-SWA_76 1093926 : 1098249 3 Tupanvirus(50.0%) tRNA NA
DBSCAN-SWA_77 1105542 : 1112716 7 Canid_alphaherpesvirus(25.0%) NA NA
DBSCAN-SWA_78 1127896 : 1130324 3 Lactococcus_phage(50.0%) NA NA
DBSCAN-SWA_79 1141475 : 1214143 69 Streptococcus_phage(21.74%) tRNA,protease NA
DBSCAN-SWA_80 1229576 : 1232386 2 Prochlorococcus_phage(100.0%) NA NA
DBSCAN-SWA_81 1238960 : 1242686 5 Enterococcus_phage(33.33%) NA NA
DBSCAN-SWA_82 1250071 : 1251499 1 Erysipelothrix_phage(100.0%) NA NA
DBSCAN-SWA_83 1256411 : 1260149 3 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_84 1264539 : 1275563 8 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_85 1280886 : 1281933 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_86 1285705 : 1297012 9 Catovirus(20.0%) NA NA
DBSCAN-SWA_87 1314501 : 1318920 4 Organic_Lake_phycodnavirus(50.0%) holin NA
DBSCAN-SWA_88 1328432 : 1329041 1 Bacillus_thuringiensis_phage(100.0%) NA NA
DBSCAN-SWA_89 1334780 : 1338858 4 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_90 1341934 : 1345034 2 Vibrio_phage(50.0%) NA NA
DBSCAN-SWA_91 1355720 : 1362602 7 Catovirus(50.0%) NA NA
DBSCAN-SWA_92 1367307 : 1373635 5 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_93 1383561 : 1384191 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_94 1387956 : 1397833 6 Bacillus_phage(50.0%) tRNA NA
DBSCAN-SWA_95 1402061 : 1423866 19 Bacillus_phage(30.0%) tRNA NA
DBSCAN-SWA_96 1431870 : 1432188 1 Enterococcus_phage(100.0%) protease NA
DBSCAN-SWA_97 1441661 : 1444313 1 Catovirus(100.0%) tRNA NA
DBSCAN-SWA_98 1450688 : 1461336 8 Tupanvirus(20.0%) tRNA NA
DBSCAN-SWA_99 1468959 : 1473343 2 Streptomyces_phage(50.0%) NA NA
DBSCAN-SWA_100 1482080 : 1486215 4 Wolbachia_phage(33.33%) NA NA
DBSCAN-SWA_101 1495281 : 1497870 2 Cronobacter_phage(50.0%) tRNA NA
DBSCAN-SWA_102 1504147 : 1508232 3 Mycobacterium_phage(50.0%) NA NA
DBSCAN-SWA_103 1526614 : 1528966 3 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_104 1534647 : 1535568 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_105 1542672 : 1549046 2 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_106 1552190 : 1555749 2 Aureococcus_anophage(50.0%) NA NA
DBSCAN-SWA_107 1565532 : 1573111 5 Staphylococcus_phage(80.0%) tRNA NA
DBSCAN-SWA_108 1580321 : 1583665 4 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_109 1591448 : 1593738 2 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_110 1612828 : 1613290 1 Clostridium_botulinum_D_phage(100.0%) NA NA
DBSCAN-SWA_111 1620614 : 1625164 7 uncultured_Caudovirales_phage(33.33%) NA NA
DBSCAN-SWA_112 1639888 : 1641217 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_113 1659507 : 1664781 6 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_114 1670694 : 1676937 7 Planktothrix_phage(33.33%) NA NA
DBSCAN-SWA_115 1681529 : 1685766 2 Ralstonia_phage(50.0%) NA NA
DBSCAN-SWA_116 1690105 : 1701550 11 Prochlorococcus_phage(25.0%) NA NA
DBSCAN-SWA_117 1707665 : 1713380 9 Golden_Marseillevirus(25.0%) NA NA
DBSCAN-SWA_118 1733547 : 1735515 3 Acanthamoeba_polyphaga_lentillevirus(33.33%) NA NA
DBSCAN-SWA_119 1746889 : 1760625 12 Pandoravirus(33.33%) tRNA NA
DBSCAN-SWA_120 1766222 : 1773840 8 Halovirus(25.0%) NA NA
DBSCAN-SWA_121 1779003 : 1784416 5 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_122 1793402 : 1796042 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_123 1802424 : 1810141 8 Bacillus_phage(40.0%) NA NA
DBSCAN-SWA_124 1818863 : 1819469 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_125 1823180 : 1829975 5 Temperate_phage(33.33%) tRNA NA
DBSCAN-SWA_126 1833907 : 1841359 8 Bacillus_phage(50.0%) tRNA NA
DBSCAN-SWA_127 1846058 : 1851760 5 Tetraselmis_virus(33.33%) NA NA
DBSCAN-SWA_128 1855604 : 1863606 10 Faustovirus(16.67%) NA NA
DBSCAN-SWA_129 1871868 : 1874654 3 Diadromus_pulchellus_ascovirus(50.0%) NA NA
DBSCAN-SWA_130 1882581 : 1891901 9 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_131 1896004 : 1903293 8 Lactobacillus_phage(40.0%) lysis NA
DBSCAN-SWA_132 1906525 : 1908001 1 Cyanophage(100.0%) NA NA
DBSCAN-SWA_133 1912090 : 1917094 4 Yellowstone_lake_phycodnavirus(50.0%) NA NA
DBSCAN-SWA_134 1922341 : 1923643 1 Geobacillus_virus(100.0%) NA NA
DBSCAN-SWA_135 1950759 : 1959948 8 Lactococcus_phage(33.33%) tRNA NA
DBSCAN-SWA_136 1992873 : 2002276 10 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_137 2006907 : 2016700 9 uncultured_virus(40.0%) tRNA,protease NA
DBSCAN-SWA_138 2028516 : 2034054 4 Moumouvirus(50.0%) NA NA
DBSCAN-SWA_139 2040220 : 2041666 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_140 2054165 : 2058244 4 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_141 2062214 : 2063510 1 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_142 2085240 : 2086143 1 Anomala_cuprea_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_143 2095758 : 2103887 9 Listeria_phage(80.0%) NA NA
DBSCAN-SWA_144 2111602 : 2112220 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_145 2118423 : 2119497 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_146 2135216 : 2137277 3 Listeria_phage(50.0%) NA NA
DBSCAN-SWA_147 2142313 : 2149075 6 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_148 2158841 : 2163950 4 Brevibacillus_phage(50.0%) NA NA
DBSCAN-SWA_149 2171060 : 2172396 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_150 2179632 : 2179986 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_151 2183532 : 2184438 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_152 2200171 : 2204195 6 Acanthamoeba_polyphaga_mimivirus(33.33%) NA NA
DBSCAN-SWA_153 2207858 : 2211946 4 Planktothrix_phage(33.33%) NA NA
DBSCAN-SWA_154 2219415 : 2223123 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_155 2227897 : 2228245 1 Clostridium_phage(100.0%) NA NA
DBSCAN-SWA_156 2232140 : 2233466 1 Phaeocystis_globosa_virus(100.0%) NA NA
DBSCAN-SWA_157 2239490 : 2240270 1 Acanthocystis_turfacea_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_158 2248494 : 2249736 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_159 2274159 : 2277906 5 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_160 2291388 : 2292384 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_161 2297708 : 2298209 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_162 2303892 : 2310515 7 Golden_Marseillevirus(25.0%) NA NA
DBSCAN-SWA_163 2313538 : 2322764 11 Bacillus_phage(40.0%) NA NA
DBSCAN-SWA_164 2330082 : 2331791 3 Paenibacillus_phage(50.0%) NA NA
DBSCAN-SWA_165 2344511 : 2347373 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_166 2350785 : 2352078 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_167 2364409 : 2367182 3 Brevibacillus_phage(33.33%) NA NA
DBSCAN-SWA_168 2371100 : 2378945 7 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_169 2387160 : 2390031 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_170 2393686 : 2396541 4 Bacillus_virus(66.67%) NA NA
DBSCAN-SWA_171 2399630 : 2411790 10 Bacillus_phage(28.57%) protease NA
DBSCAN-SWA_172 2416025 : 2420119 4 Streptococcus_phage(66.67%) NA NA
DBSCAN-SWA_173 2424983 : 2426573 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_174 2440031 : 2445663 6 Aeromonas_phage(33.33%) NA NA
DBSCAN-SWA_175 2457511 : 2462712 3 Catovirus(33.33%) NA NA
DBSCAN-SWA_176 2467119 : 2468442 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_177 2478954 : 2482843 4 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_178 2498147 : 2500566 2 Brevibacillus_phage(50.0%) NA NA
DBSCAN-SWA_179 2504211 : 2506342 2 Lactococcus_phage(50.0%) NA NA
DBSCAN-SWA_180 2511539 : 2517721 8 uncultured_Caudovirales_phage(25.0%) tRNA,integrase attL 2503715:2503728|attR 2521961:2521974
DBSCAN-SWA_181 2542363 : 2543344 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_182 2553598 : 2556982 2 Klosneuvirus(50.0%) NA NA
DBSCAN-SWA_183 2565739 : 2567825 2 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_184 2576574 : 2584716 6 Bacillus_phage(25.0%) NA NA
DBSCAN-SWA_185 2591109 : 2598032 5 Acanthocystis_turfacea_Chlorella_virus(33.33%) NA NA
DBSCAN-SWA_186 2604137 : 2608077 5 Klosneuvirus(50.0%) NA NA
DBSCAN-SWA_187 2616375 : 2619839 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_188 2623291 : 2624869 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_189 2639657 : 2657878 17 Bacillus_phage(33.33%) tRNA NA
DBSCAN-SWA_190 2664241 : 2674276 7 Tupanvirus(33.33%) NA NA
DBSCAN-SWA_191 2679968 : 2680856 1 Amsacta_moorei_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_192 2687990 : 2688614 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_193 2701742 : 2707480 7 Bifidobacterium_phage(50.0%) NA NA
DBSCAN-SWA_194 2721787 : 2722606 1 Stx2-converting_phage(100.0%) NA NA
DBSCAN-SWA_195 2737151 : 2747082 10 Streptococcus_phage(42.86%) NA NA
DBSCAN-SWA_196 2759040 : 2760453 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_197 2772133 : 2780859 6 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_198 2805051 : 2810882 8 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_199 2817140 : 2822869 5 Acanthocystis_turfacea_Chlorella_virus(66.67%) NA NA
DBSCAN-SWA_200 2826366 : 2826903 1 Listeria_phage(100.0%) NA NA
DBSCAN-SWA_201 2830375 : 2836620 5 uncultured_Caudovirales_phage(33.33%) NA NA
DBSCAN-SWA_202 2842576 : 2847396 2 Mycobacterium_phage(50.0%) NA NA
DBSCAN-SWA_203 2860881 : 2861838 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_204 2890712 : 2897529 4 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_205 2901352 : 2904413 6 Listeria_phage(50.0%) tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage