CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP026041	Vibrio parahaemolyticus strain FDAARGOS_51 chromosome 1, complete sequence	0 crisprs	cas3,csa3,DEDDh,RT,DinG,csx1	0	0	5	0
NZ_CP026042	Vibrio parahaemolyticus strain FDAARGOS_51 chromosome 2, complete sequence	0 crisprs	cas6f,cas7f,cas5f,csa3,DEDDh,cas3,WYL	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1078298 : 1095696

uncultured_Mediterranean_phage(18.18%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005455581.1\|1078298_1079939_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	4.2e-155	52.4
WP_005455579.1\|1080017_1081319_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	4.2e-134	59.2
WP_005455577.1\|1081946_1082228_+	cell division protein FtsB	NA	NA	NA	NA
WP_005493934.1\|1082229_1082934_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	A0A2H4UTB4	Bodo_saltans_virus	3.4e-05	24.3
WP_005493937.1\|1082951_1083428_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_005493940.1\|1083474_1084518_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_005493942.1\|1084517_1085294_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.6e-66	52.4
WP_005455562.1\|1085293_1085920_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.3e-35	52.1
WP_005455560.1\|1085934_1086858_+	peptidoglycan DD-metalloendopeptidase family protein	D7RWE0	Brochothrix_phage	4.1e-06	35.2
WP_005478537.1\|1086938_1087928_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	6.9e-36	35.2
WP_005493944.1\|1088007_1090569_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	4.4e-34	23.9
WP_005493945.1\|1090653_1091136_+	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	2.9e-27	48.7
WP_005478550.1\|1091336_1092380_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	8.1e-112	60.7
WP_005493947.1\|1092503_1092971_+	recombination regulator RecX	NA	NA	NA	NA
WP_005455546.1\|1093113_1095696_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.0e-78	37.9

DBSCAN-SWA_2

2124453 : 2135649

Vibrio_phage(91.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005494987.1\|2124453_2124819_+	phage protein	Q9MCC4	Vibrio_phage	6.0e-62	95.9
WP_005494989.1\|2124848_2125559_-	phospholipase D family protein	NA	NA	NA	NA
WP_005494991.1\|2125697_2125976_-	hypothetical protein	NA	NA	NA	NA
WP_139792033.1\|2126127_2126334_-	hypothetical protein	NA	NA	NA	NA
WP_005494995.1\|2126915_2127059_-	hypothetical protein	NA	NA	NA	NA
WP_005494996.1\|2127058_2128444_-	toxin	Q783T9	Vibrio_phage	1.2e-264	99.1
WP_005477634.1\|2128448_2128793_-	DUF2523 domain-containing protein	Q783U0	Vibrio_phage	5.0e-58	100.0
WP_005494998.1\|2128794_2129901_-	hypothetical protein	Q783U1	Vibrio_phage	1.3e-155	98.6
WP_005495000.1\|2130426_2130672_-	hypothetical protein	Q783U2	Vibrio_phage	3.7e-31	97.5
WP_005477619.1\|2130677_2130908_-	hypothetical protein	Q783U3	Vibrio_phage	1.6e-36	100.0
WP_005477647.1\|2130911_2131271_-	DUF1293 family protein	Q783U4	Vibrio_phage	9.1e-63	100.0
WP_079400570.1\|2131274_2132483_-	replication initiation factor domain-containing protein	Q7DKP2	Vibrio_phage	4.7e-244	99.8
WP_005488200.1\|2132406_2132622_-	hypothetical protein	A0A1W6UGD1	Vibrio_phage	1.8e-34	98.6
WP_021447749.1\|2132625_2133249_-	3'-5' exonuclease	W6ASW5	Vibrio_phage	8.5e-40	50.3
WP_005495006.1\|2133382_2133751_+	hypothetical protein	Q9MCC3	Vibrio_phage	1.6e-33	59.5
WP_005495008.1\|2133918_2135649_-	response regulator	A0A1V0SGX0	Hokovirus	2.1e-43	31.3

DBSCAN-SWA_3

2378706 : 2387542

Vibrio_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005495398.1\|2378706_2380932_-	ribonuclease R	Q0GXV6	Lactococcus_phage	8.2e-61	31.7
WP_005483265.1\|2381226_2381439_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	2.9e-16	61.2
WP_005495400.1\|2382343_2382547_+	hypothetical protein	NA	NA	NA	NA
WP_005495402.1\|2382769_2383177_-	hypothetical protein	NA	NA	NA	NA
WP_005495404.1\|2383213_2383615_-	recombination protein NinG	A0A2I7S3K0	Vibrio_phage	3.7e-20	45.0
WP_005495406.1\|2383604_2383787_-	hypothetical protein	NA	NA	NA	NA
WP_005495408.1\|2383783_2384434_-	DUF1367 family protein	K7PKS6	Enterobacteria_phage	7.0e-21	36.5
WP_005495410.1\|2384426_2384807_-	hypothetical protein	NA	NA	NA	NA
WP_005495412.1\|2384803_2385757_-	helix-turn-helix domain-containing protein	A0A1V0E831	Vibrio_phage	3.8e-39	35.3
WP_005495414.1\|2385822_2386041_-	hypothetical protein	NA	NA	NA	NA
WP_005495415.1\|2386037_2386502_-	hypothetical protein	K7PJS5	Enterobacterial_phage	3.0e-18	48.0
WP_005495417.1\|2386521_2386773_-	hypothetical protein	A0A1I9KFF6	Aeromonas_phage	3.8e-07	41.9
WP_079749494.1\|2386744_2387542_+	helix-turn-helix domain-containing protein	G9L676	Escherichia_phage	2.1e-22	37.2

DBSCAN-SWA_4

2659331 : 2669145

Klosneuvirus(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005495749.1\|2659331_2660612_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	2.5e-22	26.4
WP_005495751.1\|2660681_2660948_-	DksA/TraR family C4-type zinc finger protein	A0A1S6UBD1	Serratia_phage	2.1e-16	48.9
WP_023650089.1\|2661500_2662400_-	DUF3380 domain-containing protein	K4RM41	Pseudomonas_phage	4.8e-36	43.0
WP_005495761.1\|2662602_2663910_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.2e-90	42.8
WP_005495763.1\|2664001_2665351_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.1e-84	42.1
WP_005460060.1\|2665357_2665984_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_005495766.1\|2666058_2669145_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	3.8e-88	49.9

DBSCAN-SWA_5

3100410 : 3107112

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005440184.1\|3100410_3100881_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.7e-32	49.3
WP_005496254.1\|3101050_3102160_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.5e-63	39.6
WP_005496255.1\|3102329_3102983_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.1e-33	37.0
WP_005496256.1\|3102995_3104120_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.8e-48	36.0
WP_005482986.1\|3104127_3104577_-	transcriptional regulator NrdR	NA	NA	NA	NA
WP_005496257.1\|3104704_3105955_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	3.6e-98	47.9
WP_005483011.1\|3105972_3107112_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.3e-62	41.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP026042

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

80379 : 131831

Vibrio_phage(37.5%)

transposase,integrase,protease

attL 86399:86423|attR 101278:101302

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021448338.1\|80379_84750_+\|protease	SslE/AcfD family lipoprotein zinc metalloprotease	NA	NA	NA	NA
WP_005499492.1\|84860_85265_+	H-NS histone family protein	NA	NA	NA	NA
WP_100198882.1\|85480_86383_+	OspB protein	A0A0P0ZCT1	Stx2-converting_phage	1.2e-29	35.3
86399:86423	attL	NA	NA	NA	NA
WP_021448339.1\|86607_87498_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	1.6e-153	86.9
WP_005499483.1\|87822_88392_-	TDH-related hemolysin TRH1	NA	NA	NA	NA
WP_005499480.1\|88828_89677_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_005499478.1\|89823_90450_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.8e-05	27.3
WP_005499477.1\|90446_91139_-	ABC transporter ATP-binding protein	F2Y1V6	Organic_Lake_phycodnavirus	9.8e-05	24.3
WP_005499475.1\|91126_91927_-	ABC transporter permease	NA	NA	NA	NA
WP_023650108.1\|91943_92912_-	ABC transporter permease	NA	NA	NA	NA
WP_005499471.1\|92902_94441_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005499470.1\|94846_95689_+	urease accessory protein UreD	NA	NA	NA	NA
WP_005499469.1\|95706_96009_+	urease subunit gamma	NA	NA	NA	NA
WP_005499468.1\|96019_96343_+	urease subunit beta	NA	NA	NA	NA
WP_005499467.1\|96339_98043_+	urease subunit alpha	NA	NA	NA	NA
WP_005499466.1\|98097_98577_+	urease accessory protein UreE	NA	NA	NA	NA
WP_020842398.1\|98604_99270_+	urease accessory protein UreF	NA	NA	NA	NA
WP_005499462.1\|99278_99917_+	urease accessory protein UreG	NA	NA	NA	NA
WP_080332365.1\|100111_100387_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_021448344.1\|101331_102252_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	1.2e-162	91.1
101278:101302	attR	NA	NA	NA	NA
WP_023650135.1\|102465_103035_+	thermostable direct hemolysin TDH	NA	NA	NA	NA
WP_021448345.1\|103706_105533_+	Ig-like domain-containing protein	NA	NA	NA	NA
WP_005499452.1\|106902_107271_+	hypothetical protein	NA	NA	NA	NA
WP_161608943.1\|107802_108012_+	hypothetical protein	NA	NA	NA	NA
WP_021448349.1\|110539_111460_+\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	2.3e-158	88.5
WP_005499427.1\|113248_113563_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA
WP_025548618.1\|113555_114197_-	dienelactone hydrolase family protein	NA	NA	NA	NA
WP_005499422.1\|115893_116550_-	cupin domain-containing protein	NA	NA	NA	NA
WP_005499420.1\|116756_117899_+	hypothetical protein	NA	NA	NA	NA
WP_029827611.1\|117888_118818_+	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005499416.1\|118820_119624_+	metal ABC transporter permease	NA	NA	NA	NA
WP_005499414.1\|119892_120612_+	beta-ketoacyl-ACP reductase	NA	NA	NA	NA
WP_005499413.1\|120794_121385_+	hypothetical protein	NA	NA	NA	NA
WP_005499407.1\|123392_124232_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_005499405.1\|124315_124498_+	hypothetical protein	NA	NA	NA	NA
WP_005499403.1\|124746_125280_-	dihydrofolate reductase family protein	NA	NA	NA	NA
WP_005499401.1\|125379_125946_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_005499399.1\|126158_127016_+	glutathione-dependent disulfide-bond oxidoreductase	NA	NA	NA	NA
WP_005499397.1\|128442_129612_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	3.4e-82	45.6
WP_005499396.1\|129898_130303_+	SPOR domain-containing protein	NA	NA	NA	NA
WP_005499394.1\|130538_131831_+\|protease	serine protease	V5LS29	Emiliania_huxleyi_virus	4.5e-11	22.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP026041

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP026042

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection