CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP006780	Yersinia pestis 1412 plasmid pCD, complete sequence	0 crisprs	NA	0	0	1	0
NZ_CP006783	Yersinia pestis 1412 chromosome, complete genome	5 crisprs	cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,DEDDh,DinG,csa3	6	10	10	1
NZ_CP006779	Yersinia pestis 1412 plasmid pMT, complete sequence	0 crisprs	NA	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

7112 : 33042

Enterobacteria_phage(37.5%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011906282.1\|7112_8135_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.6e-200	99.7
WP_001297096.1\|8134_8914_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_011901819.1\|9628_11035_-	T3SS effector protein-tyrosine-phosphatase YopH	NA	NA	NA	NA
WP_002213287.1\|12717_13584_-	type III secretion system effector acetyltransferase YopJ	NA	NA	NA	NA
WP_002213290.1\|13979_16178_-	T3SS effector protein kinase YopO/YpkA	NA	NA	NA	NA
WP_002233145.1\|16195_16624_-	hypothetical protein	NA	NA	NA	NA
WP_002213291.1\|17369_17609_-	hypothetical protein	NA	NA	NA	NA
WP_002213292.1\|18781_19660_-	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_002233140.1\|19640_19715_-	RepA leader peptide Tap	NA	NA	NA	NA
WP_002229817.1\|19956_20211_-	replication regulatory protein RepA	NA	NA	NA	NA
WP_002233137.1\|20348_20597_-	phospholipase	A0A1B2LRT6	Wolbachia_phage	9.2e-06	47.1
WP_002213294.1\|21013_21421_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	4.7e-07	29.2
WP_002213008.1\|21444_21762_-\|transposase	transposase	NA	NA	NA	NA
WP_002213246.1\|21933_22392_-	hypothetical protein	NA	NA	NA	NA
WP_042469136.1\|22460_22730_+\|transposase	transposase	NA	NA	NA	NA
WP_011901828.1\|25341_27657_-\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	2.9e-279	51.5
WP_002213258.1\|27820_28372_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	5.9e-77	80.3
WP_002224338.1\|28390_28855_+	hypothetical protein	NA	NA	NA	NA
WP_002229829.1\|28993_29323_+	hypothetical protein	NA	NA	NA	NA
WP_086016640.1\|29422_30521_+\|transposase	IS3-like element ISYpe1 family transposase	S5WIU1	Leptospira_phage	1.4e-45	38.5
WP_002213267.1\|30669_31095_-	type III secretion system chaperone SycH	NA	NA	NA	NA
WP_002220893.1\|31869_33042_-\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	1.6e-220	95.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP006783

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP006783_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006783_1

10886-11275

Orphan

I-F

Consensus_repeat	Method
GTTCACTGCCGCACAGGCAGCTTAGAAA	PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRT

6 spacers

The CRISPR arrays of NZ_CP006783_1

>merge|NZ_CP006783|1|10886-11275|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGCACAGGCAGCTTAGAAACACGGCGGTGGTGAAAACGGCTGTCACTCATAGTTCACTGCCGCACAGGCAGCTTAGAAAGAATCGTTGCAGGATAGTTTTCACCGCGTCCGGTTCACTGCCGCACAGGCAGCTTAGAAAAGAACGGCGACATTTGTGACGTGTTAGTCACTGTTCACTGCCGCACAGGCAGCTTAGAAACCGAAATCATCAGATGTAATTAAGATTTTTGCTGTTCACTGCCGCACAGGCAGCTTAGAAACCCCAGGCAATGACATGCAGCGTTCTCAGAACAGTTCACTGCCGCACAGGCAGCTTAGAAAAGACTGATGCAAGATGGCGGTATGCGTACAGAGTTCACTGCCGCACAGGCAGCTTATAGA

>NZ_CP006783|1|1|10886-11215|PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	CACGGCGGTGGTGAAAACGGCTGTCACTCATA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GAATCGTTGCAGGATAGTTTTCACCGCGTCCG
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGAACGGCGACATTTGTGACGTGTTAGTCACT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CCGAAATCATCAGATGTAATTAAGATTTTTGCT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CCCCAGGCAATGACATGCAGCGTTCTCAGAACA
GTTCACTGCCGCACAGGCAGCTTAGAAA

>NZ_CP006783|1|1|10886-11275|CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	CACGGCGGTGGTGAAAACGGCTGTCACTCATA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GAATCGTTGCAGGATAGTTTTCACCGCGTCCG
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGAACGGCGACATTTGTGACGTGTTAGTCACT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CCGAAATCATCAGATGTAATTAAGATTTTTGCT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CCCCAGGCAATGACATGCAGCGTTCTCAGAACA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGACTGATGCAAGATGGCGGTATGCGTACAGA
GTTCACTGCCGCACAGGCAGCTTATAGA

>NZ_CP006783|1|1|10886-11275|CRT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CACGGCGGTGGTGAAAACGGCTGTCACTCATA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GAATCGTTGCAGGATAGTTTTCACCGCGTCCG
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGAACGGCGACATTTGTGACGTGTTAGTCACT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CCGAAATCATCAGATGTAATTAAGATTTTTGCT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CCCCAGGCAATGACATGCAGCGTTCTCAGAACA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGACTGATGCAAGATGGCGGTATGCGTACAGA
GTTCACTGCCGCACAGGCAGCTTATAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006783.1\|WP_002223316.1\|9977_10526_-\|DUF1440-domain-containing-protein	unknown	unknown	gnl\|CDD\|226008
NZ_CP006783.1\|WP_002210294.1\|3592_9571_-\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
NZ_CP006783.1\|WP_002214723.1\|26562_28353_+\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|227590
NZ_CP006783.1\|WP_002210304.1\|22124_24095_+\|5-dehydro-2-deoxygluconokinase	unknown	unknown	gnl\|CDD\|378281
NZ_CP006783.1\|WP_138921619.1\|1172_3485_-\|penicillin-binding-protein-1C	unknown	unknown	gnl\|CDD\|273954
NZ_CP006783.1\|WP_002210307.1\|26195_26498_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006783.1\|WP_002210306.1\|25177_25993_+\|5-deoxy-glucuronate-isomerase	unknown	unknown	gnl\|CDD\|226241
NZ_CP006783.1\|WP_002210302.1\|19907_20936_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP006783.1\|WP_002223323.1\|18348_19896_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP006783.1\|WP_011906367.1\|20959_22093_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP006783.1\|WP_002209745.1\|714_960_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|372675
NZ_CP006783.1\|WP_002210300.1\|17370_18300_+\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380623
NZ_CP006783.1\|WP_002227877.1\|24247_25168_+\|myo-inosose-2-dehydratase	unknown	unknown	gnl\|CDD\|275172
NZ_CP006783.1\|WP_002210296.1\|11278_12133_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651

Protein	Function_ID	Function_description	E-value
NZ_CP006783.1\|WP_002223316.1\|9977_10526_-\|DUF1440-domain-containing-protein	gnl\|CDD\|226008	COG3477, COG3477, Predicted periplasmic/secreted protein [Function unknown].	1.03166e-68
NZ_CP006783.1\|WP_002210294.1\|3592_9571_-\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NZ_CP006783.1\|WP_002214723.1\|26562_28353_+\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|227590	COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP006783.1\|WP_002210304.1\|22124_24095_+\|5-dehydro-2-deoxygluconokinase	gnl\|CDD\|378281	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090). This domain, found in various prokaryotic carbohydrate kinases, has no known function.	0
NZ_CP006783.1\|WP_138921619.1\|1172_3485_-\|penicillin-binding-protein-1C	gnl\|CDD\|273954	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C. This subfamily of the penicillin binding proteins includes the member from E. coli designated penicillin-binding protein 1C. Members have both transglycosylase and transpeptidase domains and are involved in forming cross-links in the late stages of peptidoglycan biosynthesis. All members of this subfamily are presumed to have the same basic function. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP006783.1\|WP_002210306.1\|25177_25993_+\|5-deoxy-glucuronate-isomerase	gnl\|CDD\|226241	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism].	3.14642e-169
NZ_CP006783.1\|WP_002210302.1\|19907_20936_+\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	8.15893e-97
NZ_CP006783.1\|WP_002223323.1\|18348_19896_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP006783.1\|WP_011906367.1\|20959_22093_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	6.01381e-70
NZ_CP006783.1\|WP_002209745.1\|714_960_+\|transcriptional-regulator	gnl\|CDD\|372675	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding.	5.27401e-36
NZ_CP006783.1\|WP_002210300.1\|17370_18300_+\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380623	cd19968, PBP1_ABC_IbpA-like, periplasmic sugar-binding protein IbpA of an ABC transporter and similar proteins. The periplasmic binding protein (PBP) IbpA mediates the uptake of myo-inositol by an ABC transporter that consists of the PBP IbpA, the transmembrane permease IatP, and the ABC IatA. IbpA shares homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge.	4.31227e-120
NZ_CP006783.1\|WP_002227877.1\|24247_25168_+\|myo-inosose-2-dehydratase	gnl\|CDD\|275172	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase. Members of this family include the enzyme myo-inosose-2 dehydratase, product of the gene iolE, as found in inositol utilization cassettes in many species. [Energy metabolism, Sugars].	8.43662e-165
NZ_CP006783.1\|WP_002210296.1\|11278_12133_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.17523e-68

>NZ_CP006783.1|WP_002223316.1|9977_10526_-|DUF1440-domain-containing-protein
MSEKRVNLQVIAWATIIGGFVSSLVKSGTEVNMPPRVVGEISPPAANIDAWLGWLGINSHSMDYVYQGVTISGAVVLYHWLFSFVFAFVYVLLSAYWPKVRLWYSAAYGLSITVAIHGVLIPALGFRHPAYLAGETGWLWNLNGYELWSEIIGHLCWSASLEICLVAVLAFFSKPIKGIWAN
>NZ_CP006783.1|WP_002210294.1|3592_9571_-|alpha-2-macroglobulin-family-protein
MDLLRFLLISPFALIKGLYRLSAYLLRLVGRLLRPVVGNLNWRAPQWMTKTANGLHCAFNRSEQWVAKHPKGISAAIVLLMAAASAAFYGYHWYLNRPQPIEPAPMVYQETSIRVSAPRTVNYQAQKPEAQPLSLNFMHSAAPITAMGQVVDQGISLTPAIEGEWKWATERTLVFTPKKAWPMGANYQITIDTEKLLAPQIKLNQTELNFTTPAFAYQLEKAEYYQDPQEAQKRSTIFHVQFNAPVDVASFEKQILLGLVEGKSKSEKKLNFSVVYDEKKLNAWIHSQPLMPMDKGGSVHLSINKGVNASVAATPTTQAQNKWVSVPNLYSLAVNSINATLVESDNNNGERALIIAISDAVKDKEIKNAVKAWLLPQHNFQAKESAKTSTDFYPWDMDDIDDNLLQQSTPLALTLNEAEQEYQPIFSFKFDAPSYRTLLIEVNNSLTSVGGYKMPEKIYQIVRVPDYPKTLRFMSQGSLLSMQGDKQISVAARNMTGMKLDIKRVIPSQLQHIVSFKSSEYSSAHFNRLSDEYFTEHFQYQTALNNDNPGEINYQGVDLSRYLANNPSARRGVFLLTLSAWDPEKRDNQQHSEEDYDEDQEWVGDSRFVVITDLGIITKQSQDRSRDVFVQSIHSGLPAADAKVSVVAKNGVVLLSQITDSKGHVHFPALDAFKNERQPVMFLVEKEGDVSFLPTRATYDRNLDFSRFDIDGEETPSDPRTLSSYLFSDRGVYRPGDRFNIGLITRTANWATALDGVPLRAEIRDPRDTLMSTLPITLDSSGFNELSYTTGENSPTGEWNVYLYLVGKNNETSMLLGHTTVNVKEFEPDRLKVQLQLTPERQQGWVKPQELQANINVQNLFGTPAQERRVTSRLILRPMYPSFAPFPDYLFYENRHNSDGFETELEEQTTDLQGMATIPLDLKSYADATYQLQLLSEAFEAGGGRSVAATARVLVSPYDSLVGVKADGDLSYINRDAVRKLNIIAVDPSLNKIALPDLSLSLIEQKYISVLTKQDSGVYKYQSRLKEQLVSEQPLQISPTGTDFTLVTQQPGDFILVVKDSQGQVLNRISYTVAGNANLTRSLDRNTELKLKLNQAEYLQGEEIEIAINAPYAGSGLITIEKDKVYSWQWFHSDTTSSVQRIRIPPAMEGNGYINVQFVRDVNSDEIFMSPLSYGVMPFKISTKARQAAIELASPSVIKPGEVLPIKVTTDSPQRVVVFAVDEGILQVARYRLKDPLDYFFRKRELSVQSAQILDLILPEFSKLMALTSAPGGDAGEGLDLHLNPFKRKQDKPVAYWSGITEVNGETTFNYPIPDYFNGKIRVMAISATPDRIGKVQTSTTVRDNFILTPNVPAMVAPGDEFDVTVGVSNNLQGLKGKAVDITVRLTPPPQLEVVGEAQHSLSLAEKRETLVSFRLRARSALGDAPLVFDASYGSQSSRRTVSTSVRPAMPFRTQSVMGRMEGNKHTVTNLRQMFDNYAQRQATASHSPLVLTQGLARYLADYPYYSSEQIVSRSIPLIMQSKHPEMDSALNQNEVRDQLKNMLRILSSRQNSTGAIGLWHASPTPDPFVTPYVVQFLLEAKSAGYSLPNDILEGANNALRLLAARPYDDLYSLRLRAFAVYLLTLQGEITTNTLASVQSTLQQLYPDSWQTDLSAIYLASSYRLLKMDDEANKLLQPTWKQLGKAYSKAWWTQNYFDPLVQDATRLYLITRHFPEKVSSIPPQALENMVLALRDEHYTTYSSAMSILALESYTSQVAAQQDTPETLQIIEISKSKGIDPNVISTLNGLFVQGDFTGEAKAIQFNNYASAPAWYVVNQSGYDLQPPKDAISNGLEISRSYTDEQGKPVTQVTLGQKVNVHLKIRANAKQGQNNLAIVDLLPGGFEVVQQTAPEPEFYDNQDDQDEETGSGWQSPLMVSGSSWYPDYSDIREDRVIIYGSASTDVKEFIYQIKSTNTGRFVVPPAYGEAMYDRNVQALSVGKGHILVVPPEAK
>NZ_CP006783.1|WP_138921619.1|1172_3485_-|penicillin-binding-protein-1C
MALFLLALLVIGFRLWPHPPLSQGLPLSTAYYDRHGTLLRLSLANDDRYRLWTPLEEISPLVIQGIQLHEDRGFYYHPGVNPISLLRGFWQSYVQGGRQQGGSTLTMQLARMHWHLNTRSPTGKLRQIARAIQLELSYSKHDILEAYLNYAPYGRNIESIAAASLIYFDKKPQQLTLPEALTLAVLPQSPSYRIDPTTGVLGSALTQARNRLFVRWQQTYPTDSSQMALFQLPLSLRQPEKMPYIAPHFIEQIRRQNQQLANTQSQVDTTLDANLQQLVEKQVEAFIRRNNSRGIHNAAVLLLDTRDMGVRALVGSANYYDREIQGQVNGTNAKRSPGSTLKPFIYALGLEQGILHPMTILKDVPSSFGAYAPENFDHRFLGPVTATDALNFSRNIPAVYVASRLRQPTLYQFLRLSGVTNMASENHYGLSLVLGGGEITLQELARLYAMLANRGTLHPIQMVQTDKTLPSIRLLSEAASFITLDMLRQHRRPGDTLAQSPTSLPVYWKTGTSWGFRDAWSAGIFGPYVLIVWEGNFAGKGNSAFVGADAAAPLFFNIIDSIQANYPALREPKHPWPPQLKRVAICLASGNLPTPWCQQQGKTWFIPGKSPIKVDTVYRPVVIDINSGQAACLPYDRSQTRTEVFEFWPSDLANVFAQAGLPKRQPPDRSHCKEGNTLASGNAPRITSPLRNTTYTLRQSQQGRDQIVFSATLDADSTTTYWFVDDIYLGSSTSKKSIDWHPTRSGQYRIRAIDDHGRADSRLIRVEKVD
>NZ_CP006783.1|WP_002209745.1|714_960_+|transcriptional-regulator
MDKQDWHPADILAGLKKRGTTMAALSRKSGLASSTLANTLLRPWPKGERLIAEVLELHPAEIWPSRYLKPKKSPAESVNPG
>NZ_CP006783.1|WP_002210296.1|11278_12133_-|MurR/RpiR-family-transcriptional-regulator
MTTASNLSELQQQIRDRYDNLSKRLQQVSRYVLDNTNSVAFDTVAVIAERADVPPSTLIRFANAFDFSGFNEMKQLFRMNLVEETASYTDRARLFRAMESEAVPETPLGILQEFARSNAQALQQLAARTEPEMLQRAVELLAQADTIYVVGLRRSFSVAAYLTYALSHLECRPVQLHGLGGMLREQVNSIKARDIVVSISFSPYAEETVMVSEIAASAGARQIVITDSQISPLATFSDLCFVVKEAQVDAFRSQSATLCLVQSLVVALAYQQEAQAGAALAHRQ
>NZ_CP006783.1|WP_002210300.1|17370_18300_+|sugar-ABC-transporter-substrate-binding-protein
MKKLILAALIVFTSGVAFAENEQIVFSTPNLAMPFEVHMQRTAVKTAKALGVKLQVLDGQGSSPKQVADLENAITRGAQGFIVSPNDINAISSAVEEIQQAKLPVVTLDRSVESEKKVPHFGANNYKGGEAIANYVKSMFPNGAEIVLLTGQPGSSSNIERTKGIRDSLKTGGDKYRIVVDQTGNWMRSEGMRIIESVLPSLPKPPQVILSANDDMALGAIEALQSHGMKPGEIMVTGFDAVPEALARVREGWMAVTADQRPGYAVTTAMNQLVANIRDQKAITGADFLPTMITKENLDQAERVSEAGK
>NZ_CP006783.1|WP_002223323.1|18348_19896_+|sugar-ABC-transporter-ATP-binding-protein
MSQPLLKITDMAKSFSGVWALSNVQLTLEQGEIHALLGENGAGKSTLLKALSGAQPQTHGEIWFNGEMLALDDSPVERQNKGIITIYQEVNLLPNMTVAENMFLGREPRRRQVFVDEKAVNQEAQAILDYLQLNVSPTTAVARLSIAQQQMVEIARALTLNAKLIVMDEPSAALSDSEVESLHRVVRELKGRGVSIIYVTHRLHEVFQLCDRFTVFQDGRYTGSDEVAGTNVEKIIRLMVGRDVVFNRRPASETHHQDQPIRLSVQGLCREKPPLDPHGVALKDISFHVHAGEVLGIAGLVGAGRTEVARCLFGAGAFTSGNFEIDGVPYQPRDPMFALEQGIALVPEDRKKEGAVQGLSIRDNLTLSSLAGLLQWRFFVNTRKEDQLIETYRLALQIKMVNSEQAVRKLSGGNQQKVILARCMALNPRILIVDEPTRGIDVGTKSEVHQVLFDMAKQGVAVIVISSDLPEVLAVSDRIITLSEGRVTGEIHGDDASEERLMTMMTINHNALNAA
>NZ_CP006783.1|WP_002210302.1|19907_20936_+|ABC-transporter-permease
MLQPLSKPQASVKSAMRFDPITFFERFGVLIFMFLLLIFFQLQNSNFLSERNIFNILTEVSIYGIMAVGMTFVILTAGIDLSVGSILAVSAMTAAYVIKGDNFTTIDPNAWGGMSWLIGLSICLAMGTLIGFLQGLGVTRLRLPPFIVTLGGMTIWRGLTLVINDGAPIAGFDAGYRWWGRGDLLGISIPIWIFAIVAIAGYLALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYVVIGCLAGLAGFILSARLGSAEAVAGISFELRVIASVVIGGTSLMGGYGRIGGTIIGSIIMGILINGLVLMNVSAYYQQIITGLIIVLAVAFDTYAKNRRGAL
>NZ_CP006783.1|WP_011906367.1|20959_22093_+|Gfo/Idh/MocA-family-oxidoreductase
MKEVRIGLIGTGYIGKAHAIAYAQAPTVFELRGKLVREMVAEVSPALAAQCAQAFGFNRFTCDWRELVADPAIDVVDICSPNYLHKEMALAAIHHGKHVYAEKPLALNARDASEMAAAATRAGVKTLVGFNYIKNPSAKLAKEIIERGEIGEVIHFYGTHNEDYMADPNTPIHWHCLHATAGLGALGDLAAHIVSMAQYLVGEITQVCGDLKTVVVTRPASVGSSARVAVENEDQAHAMVRFVNGAQGVIEASRVACGRKMGLSYMITGTQGAISFTQERMAELKLYLHNDPVNRQGFRTLLVGPAHPEYAAFCMAAGHGIGFNDQKTVEVRDLIDGIAMDTPLWPDFAEGWKVSRILDAIALSHQDSRWVNVTDIV
>NZ_CP006783.1|WP_002210304.1|22124_24095_+|5-dehydro-2-deoxygluconokinase
MSVEKQFSVSAEKTCNTENKCNTEKKFDVICMGRIAVDLYGQQIGARLEDVASFAKYLGGSSGNVAYGSARQGLRSSMLARVGDEHMGRFLREELHQVGCDTSHLTTDKKRLTALVLLSIKDRDTFPLIFYRDNCADMAITAQDFSEQYIASARSLAITGTHLSHPNTREAVLTALRYARRNGVRTVLDIDYRPVLWGLTSLGDGETRFIESHQVTAELLAVFNLFDVIVGTEEEFHIAGGSTNTLDALRGVREVSDAALVCKRGALGCSVYTEAIPQTLDEGLTVSGVRVKVLNVLGAGDAFMSGLLRGYLNDEGWPQACRYANACGALVVSRHGCAPAMPSKIELDNYLARADAVVRPDLDVHLNHLHRVTTRRRQWPELCVMAFDHRSQLEEMALQCGADLCHISTLKTLILQASREAVHTAGLQGKAGLLCDGTFGQDALNAITGAGWWIGRPIELPGSRPLAMEHGNIGSQLIGWPQEHIVKCLVFFHPEDAYSLRLEQEQKIIEVYRACCQSGHELLLEVILPAGMPRSDELYLRAISRFYNLGVYPDWWKLPPLASEGWAALNKLIERRDPHCRGVVILGLDASLEALRTGFNAAAGYPIVKGFAVGRTLFGDASLAWLKRDIDDTQLIARIRDNYLQLITLWRERGQK
>NZ_CP006783.1|WP_002227877.1|24247_25168_+|myo-inosose-2-dehydratase
MRKTEADRHTTAVQLGINPLTWTNDDLPSLGAETSLETCLSEGKEAGFAGFELGNKFSREAGVLGPILEHHQLKLVSGWYSGRLLERSVEEEIVAVRSHLALLRELGAKVMVFAEVSGCIHGEQQTPVHLRPRFPPARWAEYGAKLTAFARYTQALGVQIAYHHHMGTVIESAQDIDNLMIHTGEEVGLLLDTGHLTFAGADPLAVAQRWIARINHVHCKDVRTSVLADVKNRKTSFLDAVLSGVFTVPGDGGVDYPPIMALLKQHGYQGWLVVEAEQDPNVAHPMTYARMGYHNLSRLAHNAGLI
>NZ_CP006783.1|WP_002210306.1|25177_25993_+|5-deoxy-glucuronate-isomerase
MSRLLSRRQAPDERGLTQRITPAQAGWGYVGFEVYELNEGQPLTLTAVPDERCLVLIAGRASISTPSAQFPNIGDRMSPFERHKPWAVYVTPGEAVQVQAITPLELAVCSAPGKGTYPTRLISPEDIGAEARGKGHNQRYVHNILPEDHPADSLLVVEVYTNEGASSSYPSHKHDTDNPPHETYLEETYYHRLNPEQGFCMQRVYTDDRSLDECMAVYNREVVMVPRGYHPVATMAGYDSYYLNVMAGPVRKWIFSWENDHVWINHNYPIT
>NZ_CP006783.1|WP_002210307.1|26195_26498_-|hypothetical-protein
MQSPSNNSRAHCSKPFLYRQNQWHFNQAISEYRLPAPLSAQDLTDSVNHINMSVIKDNAIRASGTAKIMMNHRLRRTAATIKPTHIAATTGQYIIEKTMI
>NZ_CP006783.1|WP_002214723.1|26562_28353_+|ABC-transporter-ATP-binding-protein/permease
MDRSRILKFLLPYLWPKDNPKLRYYLIIALFFMVIAKISTTLVPLAYKSMVDTLSSENAKMLAIPISLIIAYGVARVSASLFEELRNVMFVHVSQNATRLLGLRVFRQLHALSLRFHLERQTGGLSLSIERGTQAVSTVLSRLLFSILPILFEITLVSVIMWRLLSGWFALAILVTVSCYILFTVMAVGWRTRFRRELNKANADANTKSIDSLLNYETVKYFGNEDFEAERFNLSRQLYEYAAIKNQISFTVLSFGQTAIISVGLIVMMAMAAQGIVQGQMTIGDFVLVNAYLLQLYQPLNFFGFIYSEIRQALIDMENMLDLLMVKQEITDRPDALPLQLTKGEVRFDAVSFSYDPRRPILNNVSFTIPPGKTVAIVGASGAGKSTLARLLFRFYDVTAGAVYLDDQDIRGVTQSSLREAIGIVPQDTVLFNDTLRYNIGYGKTDSTDEEIERAAKLAHIHEFIISLPDGYETRVGERGLKLSGGEKQRVAIARTILKKPSILVFDEATSALDTHTEREIQSHLREVSRDHTTLVIAHRLSTIIDADEIIVLEAGSIVERGRHDELLLKNGRYAGMWQNQYHEEEAYHEAEQPVL

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Crispr_ID: NZ_CP006783_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006783_2

921927-922376

TypeI-F

I-F

Consensus_repeat	Method
GTTCACTGCCGCACAGGCAGCTTAGAAA	PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRT

7 spacers

cas1,cas3f,cas8f,cas5f,cas7f,cas6f

The CRISPR arrays of NZ_CP006783_2

>merge|NZ_CP006783|2|921927-922376|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGCACAGGCAGCTTAGAAACAAGTCCTCGGCATGGTCGCCCTCATTGGTGAGTTCACTGCCGCACAGGCAGCTTAGAAACGTTCCAGCGTGTATTTGAGTCGGTCACGGATAAGTTCACTGCCGCACAGGCAGCTTAGAAAGTGGAATGGCTATTGCTATCGCTCGAGAATATGTTCACTGCCGCACAGGCAGCTTAGAAATCGCGAACGCGCTCAGGTTCACGGAATGGCGAGTTCACTGCCGCACAGGCAGCTTAGAAAATCTGCGCCAAAGAAAATGCCATTCAGATAATGTTCACTGCTGCACAGGCAGCTTAGAAAAACTACTAGAAGCTTGCCCATCTTACCTTTTCGTTCACTGCCGCACAGGCAGCTTAGAAAATCATGAAAGACATTGTTCGCCAGTCCCCTGAGTTCACTGCCGCACAGGCAATAATCAAA

>NZ_CP006783|2|2|921927-922316|PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	CAAGTCCTCGGCATGGTCGCCCTCATTGGTGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	CGTTCCAGCGTGTATTTGAGTCGGTCACGGATAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTGGAATGGCTATTGCTATCGCTCGAGAATAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCGCGAACGCGCTCAGGTTCACGGAATGGCGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCTGCGCCAAAGAAAATGCCATTCAGATAAT
GTTCACTGCTGCACAGGCAGCTTAGAAA	AACTACTAGAAGCTTGCCCATCTTACCTTTTC
GTTCACTGCCGCACAGGCAGCTTAGAAA

>NZ_CP006783|2|2|921927-922376|CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	CAAGTCCTCGGCATGGTCGCCCTCATTGGTGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	CGTTCCAGCGTGTATTTGAGTCGGTCACGGATAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTGGAATGGCTATTGCTATCGCTCGAGAATAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCGCGAACGCGCTCAGGTTCACGGAATGGCGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCTGCGCCAAAGAAAATGCCATTCAGATAAT
GTTCACTGCTGCACAGGCAGCTTAGAAA	AACTACTAGAAGCTTGCCCATCTTACCTTTTC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCATGAAAGACATTGTTCGCCAGTCCCCTGA
GTTCACTGCCGCACAGGCAATAATCAAA

>NZ_CP006783|2|2|921927-922376|CRT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CAAGTCCTCGGCATGGTCGCCCTCATTGGTGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	CGTTCCAGCGTGTATTTGAGTCGGTCACGGATAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTGGAATGGCTATTGCTATCGCTCGAGAATAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCGCGAACGCGCTCAGGTTCACGGAATGGCGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCTGCGCCAAAGAAAATGCCATTCAGATAAT
GTTCACTGCTGCACAGGCAGCTTAGAAA	AACTACTAGAAGCTTGCCCATCTTACCTTTTC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCATGAAAGACATTGTTCGCCAGTCCCCTGA
GTTCACTGCCGCACAGGCAATAATCAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006783.1\|WP_002210200.1\|910612_911653_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380502
NZ_CP006783.1\|WP_002211868.1\|928751_929702_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|187807
NZ_CP006783.1\|WP_002211867.1\|929719_930724_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP006783.1\|WP_002210192.1\|920344_921589_-\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|223740
NZ_CP006783.1\|WP_002211863.1\|932946_934305_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874
NZ_CP006783.1\|WP_002210196.1\|915166_916222_+\|glycosidase	unknown	unknown	gnl\|CDD\|350124
NZ_CP006783.1\|WP_002210197.1\|914195_915020_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP006783.1\|WP_002210198.1\|913319_914195_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP006783.1\|WP_002221142.1\|923712_927000_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|187804
NZ_CP006783.1\|WP_002230953.1\|917309_918425_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006783.1\|WP_002222491.1\|927408_928755_+\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09675_cas8f_CAS-I-F	gnl\|CDD\|274203
NZ_CP006783.1\|WP_002210201.1\|909207_910596_-\|phosphomannomutase/phosphoglucomutase	unknown	unknown	gnl\|CDD\|185312
NZ_CP006783.1\|WP_002211866.1\|930734_931289_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09674_cas6f_CAS-I-F	gnl\|CDD\|378224
NZ_CP006783.1\|WP_002216551.1\|934428_934638_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006783.1\|WP_011906296.1\|922735_923716_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP006783.1\|WP_002211864.1\|932396_932900_-\|formaldehyde-activating-enzyme	unknown	unknown	gnl\|CDD\|224708
NZ_CP006783.1\|WP_016674094.1\|931366_932386_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381305
NZ_CP006783.1\|WP_002210193.1\|918463_919738_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006783.1\|WP_002213840.1\|916248_917187_+\|DUF1861-family-protein	unknown	unknown	gnl\|CDD\|378102
NZ_CP006783.1\|WP_002210199.1\|911924_913211_+\|carbohydrate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224567

Protein	Function_ID	Function_description	E-value
NZ_CP006783.1\|WP_002210200.1\|910612_911653_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380502	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria. This group belongs to the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.	1.56156e-83
NZ_CP006783.1\|WP_002210192.1\|920344_921589_-\|mechanosensitive-ion-channel	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	2.65074e-32
NZ_CP006783.1\|WP_002211863.1\|932946_934305_-\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.50877e-50
NZ_CP006783.1\|WP_002210196.1\|915166_916222_+\|glycosidase	gnl\|CDD\|350124	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase. This subfamily contains the glycosyl hydrolase family 130 (GH130), as classified by the carbohydrate-active enzymes database (CAZY), enzymes that are phosphorylases and hydrolases for beta-mannosides, and includes Listeria innocua beta-1,2-mannobiose phosphorylase (Lin0857). hey possess 5-bladed beta-propeller domains similar to families 32, 43, 62, 68, 117 (GH32, GH43, GH62, GH68, GH117). GH130 enzymes are involved in the bacterial utilization of mannans or N-linked glycans. Structure of Lin0857 shows beta-1,2-mannotriose bound in a U-shape, interacting with a phosphate analog at both ends. Lin0857 has a unique dimer structure connected by a loop, with a significant open-close loop displacement observed for substrate entry. A long loop, which is exclusively present in Lin0857, covers the active site to limit the pocket size.	9.75278e-165
NZ_CP006783.1\|WP_002222491.1\|927408_928755_+\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|274203	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	0
NZ_CP006783.1\|WP_002210198.1\|913319_914195_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	2.26211e-58
NZ_CP006783.1\|WP_002221142.1\|923712_927000_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	0
NZ_CP006783.1\|WP_002213840.1\|916248_917187_+\|DUF1861-family-protein	gnl\|CDD\|378102	pfam08950, DUF1861, Protein of unknown function (DUF1861). This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function.	6.29599e-176
NZ_CP006783.1\|WP_002210197.1\|914195_915020_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	4.72016e-69
NZ_CP006783.1\|WP_002210201.1\|909207_910596_-\|phosphomannomutase/phosphoglucomutase	gnl\|CDD\|185312	PRK15414, PRK15414, phosphomannomutase.	0
NZ_CP006783.1\|WP_002211866.1\|930734_931289_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	1.71931e-94
NZ_CP006783.1\|WP_011906296.1\|922735_923716_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NZ_CP006783.1\|WP_002211864.1\|932396_932900_-\|formaldehyde-activating-enzyme	gnl\|CDD\|224708	COG1795, COG1795, Formaldehyde-activating enzyme nesessary for methanogenesis [Energy production and conversion].	1.50048e-90
NZ_CP006783.1\|WP_016674094.1\|931366_932386_-\|aldo/keto-reductase	gnl\|CDD\|381305	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins. Escherichia coli YajO is the prototype of this family. It is an uncharacterized aldo/keto reductase family oxidoreductase.	1.63674e-141
NZ_CP006783.1\|WP_002211867.1\|929719_930724_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP006783.1\|WP_002211868.1\|928751_929702_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|187807	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	1.12008e-157
NZ_CP006783.1\|WP_002210199.1\|911924_913211_+\|carbohydrate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	2.85244e-50

>NZ_CP006783.1|WP_002210192.1|920344_921589_-|mechanosensitive-ion-channel
MQQRISQWLERLGMEFSDVMSLTMVIGLILLISVMIHLVLHRVVLAALQRRGQQSQRIWQQAITKHKLFQRVALLLQGIIINLQAVLWLQNGSQTQAVIVTAAQVWIMAFALLALFSLLDTLLALLRQSSVAHQLPLRGICQGLKLVAAIFIGIMIVSLLMGRSPLLLLSGLGAMTAVLMLVFKDPILGLVAGIQLSANDMLKIGDWLEMPKYGADGAVTDIGLTTVKVRNWDNTVTTIPTYALISDSFKNWRSMSESGGRRIKRSINIDTTSVHFLSEQEQQRLTLNPLLQHYLSEKSQELNQYNQQIALDLSSPLNGRRLTNIGTLRAYLVAYLRAHLGIHQSMTLMVRQLAPTPEGLPLEVYAFTNTTIWAEYEGIQADIFDHIFAVVSEFDLRIHQTPSGNDMRSMLAKV
>NZ_CP006783.1|WP_002210193.1|918463_919738_+|hypothetical-protein
MKLLNTLVCIIGLTSFSSSAKLVNAEHLDALYQKVTVANKTELGLIHIYSEFPDYRWVKDPIEGVSAIDDVARAAIFYQRQYQATGSAADLEKVKSLVEFILYQRADNGYFYNFIYPDHSINKEYKTSVAEPNWWTWRALWALTQVYPTLVKTDNALAQRTRETIFATIDVIYKDFNFKQTRGEKEGVAVPEWLPHTAGDQASVLLMALSDAQALEAKPEIEKMMRSLAAGIMLMQVKDTSSPVNGAFLSWQNLWHGYGNSQAYALLVAGNRLGDRDMIKAAFNELDHFHPWLISNGLLNEFTVRQQGEKVTLIEQKKFSQIAYIIRPMVFANIKAWEISRDAVYLERAVDLSLWFFKNNPAQAQMYYPVTGIAFDGIDSATTVNKNSGAESTIEALLTLQLIESIPDAKRMLESALEKRNIKQ
>NZ_CP006783.1|WP_002230953.1|917309_918425_+|hypothetical-protein
MKHKKYLPLFLMAGICSVAQADNSPDVVSANNMDNRTFFAGDKIRIVKDGGETIEAVVELSDDNIGIVRIPKDEKAYFHGNWLAEYKIEHFRNEGRSTNSRPVHEIVFADGRVNFGDTGWNTGFLLKQVRFTSDSRNESNHKVDFRMVEMEIRPAWSKSIDKHWFMFEGIYLGKTGYEKNRTTGGDNNIGGDGYGFRPYYRYQVSDRLSVNTDVKMLVEDKDARGADNGRFQFYEALVNVNYRVADNVHAGIEVFRKEGQDFNHNGTKTANVLEQELRPWVAWNMGKNNFLFKMEPQLRRIGGQDGYRETSKAQKYIFNYSYPIADRVYLVAEYFYRVEHDKKFWDRGVRDNKSYSDTTTHFGKLGINYIF
>NZ_CP006783.1|WP_002213840.1|916248_917187_+|DUF1861-family-protein
MMRHAPPASVAQLFADYQKRTAHNTFSTGRLEFTGVGDKDVYNITAPFTSAGQVVIAGRVEARDSEHSTIVFFSEQQGQWAPVENAPTFQLQDPFFTRIEDELILGGVEINPHPDNPRQLIWHTVFFRGRDIHSLTRFASGPPGMKDIRLCHIQQGRIGVFTRPQGKIGGRGTIGYVEINNLEALTPETITSAELFEQQFNSEEWGGVNETHLLCDGTIGLLSHIACFDQHGRRHYYPGVFIFNPDTKNYTPIKIIAARDNFLPGATKRPDLVDVIFPGGLIVLPNNGWRLYVGASDAEAHWIDIEDPFSGF
>NZ_CP006783.1|WP_002210196.1|915166_916222_+|glycosidase
MMRYSGNPLITPQDITPSHPGFKVECAFNAGITKLGDETIMLIRIAESVIPESEGITVVPLLMEISGHWQVTTRVFKHDDPAYDFSDPRLISDIADPSTVYLTSLSHLRVARSHDGVTFVVDDQPFIFPANGDEAFGCEDARITQIDGAYYINYSAVSAKGICTALAVTQDFTDVKRLGLIFCPDNRDACLFPEKINGKYMTLHRPAPKHFGKPEIWLASSLDLLHWGDHRHLLGTSQDPWDALKLGGGAQMLKTEKGWLQIYHGVDATQRYSLGALLLDLEQPTKILAKSPVPLLQPQAPYELHGFFGNVVFTCGALIENDSLRVYYGAADECMCLAEMPLAQLWQHLSV
>NZ_CP006783.1|WP_002210197.1|914195_915020_+|carbohydrate-ABC-transporter-permease
MKKNINSLIIHLVMFSLALSWLYPYIWMVLSSFKQSADIYTTGLFGSAYSLDNYRFLFENSGRVEKPFLKTLFNSLFISTVVTVAVTLSSMFIGFALAKMQFKGQSLFRNLLFLQMVFPASMFIIPQFVLVRELGLLNTYSAMIVPFLMSSWGIFMISQSFQGTPNDYIHAAKIDNASLWQIMIYLMMPLNKAIIAIVALFTFVGTWDNFLWPLIVIQDESKMPLSVLLATFSKSYGVYVGPVIAGAVIQTIPIVVLFILFRKYFMQGMSLSLK
>NZ_CP006783.1|WP_002210198.1|913319_914195_+|sugar-ABC-transporter-permease
MTFLKLKDKQVGSVLAASYLGYTSIFWFYPFIWLAVLSLTEWRFVGIPTFNGLNNFILVMQDPLFWKSMLNVMRFLMYYLPIVFISSFLFAFGLQKLKHGRTFVALSFLLANVSSGVAYSIVFSKIFSQNGPLNTFLYDWFGFTLPWLTSPDFAMLSIALVVTWKFVGYYGLILFSGLNSIPKEIYSAAELDNTRTIKRLFHITLPMINPQLIMVLVLAITVSFAIFTEPYLITGGGPLNSTTTPMIVMYETAFMKMQPSWAATMSIFIALISFGIILGVRKLLERKVEIV
>NZ_CP006783.1|WP_002210199.1|911924_913211_+|carbohydrate-ABC-transporter-substrate-binding-protein
MLEKMKNTLISLAIASSCVVFTGCDNDTASAKNEKQDITLWIAPNNVQEAFWSEVVGEWNKQPDKKKVVFSTIPAAGSSEEAIMNAIASDRAPDISENIFTGFGSQLADLGQVVDLSTLDGYENLISTRQMTDIMDNWRYNGKNYILPIYMNPVLFWWRGDLLKEQGFSEVPKTYDEVYALSEKYTIPDKRYAIQATSGRNWWDRWFDFIALYYAQSDGKPYIANQQASYDNQAGRDVLDFMHTLFSKKWTLYDFGQDDPLVTGKVLGAVRGPWDISRYQQQYPEILKHIKMGPMLVKEQQDKPHTFADGKGLVLFSHSKVKPEAWEFIQWVFSQPKFDKRWMELTGMPPARADLLTNPFFAEYYQEHPYAAAYAEYVNVAIPPVSSGETVEIQRSMTQMIEKTAFNTATPDEALQQSIKEVNAILKP
>NZ_CP006783.1|WP_002210200.1|910612_911653_-|LacI-family-DNA-binding-transcriptional-regulator
MTTGKKRETLKTIAETLNVTHTTVSNVFNRPEKVSPELREKILAYAESINYHGPAGAGRFLRTGKCGTLGVIFNDNLSYVFSDRHDIALMRGIAEECEKNGINIALMPLKTNNALKKRMMGALVDGYILNATYNNDEVVQAALTSGLPVITTDIKLQNFTCVSIDDGAAMQAICHHLLAAGHKKFGIVSFPVKRLPGELTSLAEFSTDYDNGVAFGRISACITALSDAGIDLHTSYVAEQPHSETGGEKAAKALLAKEPGISAIICLSDRFAFGVYQFCQDHNIPVPGQIAITGFDDIDIQDPPVGLTTIRQPTVLKGREAARALISGQLDNDISLDFELVVRDSA
>NZ_CP006783.1|WP_002210201.1|909207_910596_-|phosphomannomutase/phosphoglucomutase
MEKLTCFKAYDIRGKLGSELNEEIAYRIGRAYCQWLKPAKVVVGGDARATSVELKNALAKGLMDGGADVIDIGMVGTEEVYFATRFYGVDGGIQVTASHNPIDYNGMKLVKKDAQPISGDNGLYEIQRLAQDNHFAPPGVRGQLETQLVREHYVEHLLSYIDLNALLPMKIVVNAGNGAAGPTLDALEAALAKRKVPISFIKINHQPDSSFPNGIPNPMLPENQWSTRQAVCEHQADLGIAWDGDFDRCFFFDHLGNFIEGYYIVGLLAEKFLLTNNMGKATHNTDKIIHDPRLTWNTIDIVQTLNGTAIESKTGHAFIKDAMRHHDAVYGGEMSAHHYFREFGYCDSGMIPWLLVIELLSKKTTSLFSLIESRKAKFPVSGELNFTVSDPKTKIQQIKQFYADSAIHVTGIDGLSMEFEHWRFNLRSSNTEPLVRLNIETRGDVTLLEQKTAQLTQLLYPK
>NZ_CP006783.1|WP_011906296.1|922735_923716_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MENAIHSSDLKTILYSKRSNIYYLEYCRVLVNGGRVEYVTDEGKQSLYWNIPIANTTVIMLGTGTSVTQAAMREFARAGVLVGFCGGGGTPLFAANDVEVNVSWLTAQSEYRPTEYLHDWVSFWFDDEKRLAAAVAFQRIRIAQIQQHWLSSHIQRESLFPVNHDQLLFILTRFEQNLANCLTSNDLMVQEAVLTKALYKLAANTVNYGDFTRAKRGGGIDLANRFLDHGNYLAYGLAATATWVIGLPHGLSVLHGKTRRGGLVFDVADLIKDALVLPQAFIAAMQGEEEQEFRQRCISGFQRTEALDVMIDGIKETAALCSQVPR
>NZ_CP006783.1|WP_002221142.1|923712_927000_+|type-I-F-CRISPR-associated-helicase-Cas3
MNILLISQCHKRALNETRRILDQFAERKGDRTWQTAITQEGLNTLRKLLRRTARRNSAVACHWIKSNNQSELLWIVGNLRRFNAEGTVPTNTTQRDILRSQDENNWHSVETIALLAGIAGLFHDFGKANVLFQQGLQGQGKTYQPYRHEWVSLRLFQAFVEQKNDIQWLTALSQINPADETTLMSNLVKDGLDDYTNPLAALPPLAKTIAWLILSHHRLPVYPSKDYHRPPKVEEIDDWLHQQLMPVWNSTNMDSGDWREKDKLDVWRFPHGTPLQSAEWCKKAQKFAKRALRQPSLVNDGHLNQRFTSHMARLVLMLADHHYSSLPATPGWQDKNYQVFANTHNKMRDANAHSKTIEMKQRLDEHNIGVGQNALLLGRSLPHIRKTLPAITRHKGFKQRSVQEKYRWQDKAFDLAVTLRERSLQQGFFGVNMASTGCGKTFANARIMYGLSDEKQGCRFSVALGLRTLTLQTGTALQQKLTLQKDDLAVLIGSQSVLQLYQLNNDKLEPRGTGSQSADKFFSEHQYVSYDGSLDDGRLSTWLSNNDRLKRLLCAPVLVCTIDHLIPATESLRGGKQIAPMLRLLTSDLVLDEPDDFDRNDLPALCRLVNWAGMLGSRVLLSSATLPPALVQALFNAYRAGRADYQQASGQPDTPVNICCAWFDEHGVAQQDIQQSKDFIQHHGDFITRRVGKLSTAEVLRRAELIPVSSASVKNGSVLDAMAAVMRDSMLRLHQAHHQTHPSEKTVSVGVVRMANIDPLVAIAQRLYAMAAPENYRIHYCVYHSQHPLAVRSAIERRLDVTLTRYQPNALWQVAEIEHALQHHPEQHHLFVVLATSVVEVGRDHDYDWALAEPSSMRSFIQLAGRVQRHRQVAPQMANMHILQKNFKALTQKDPAIPVYCKPGFETTRCRLNTHDLDKLLLPSQYKVINAISRIQERTKLEPRDNFVDLEHLSLRLILQGSAEPLKYYAALWWRKQATWSGEQQRCTPFRQSSPDEQHNLWIDDEADKPVFKRLDSDQIEWKVSDGFQDVELTLAAGNSAWIDTDCLRIYQWLAESLNKELNEVSRQFGEVRLPKKDGERWHYHPLLGVFGALD
>NZ_CP006783.1|WP_002222491.1|927408_928755_+|type-I-F-CRISPR-associated-protein-Csy1
MSDEGLAAFIVSYIKSREQPKLEAFDKEAEKRLAGLTQAEDIALAQQEIAQQRQELIARYEVRNWLTDAANRAGQIKLATHAPKYTHSDSKSSGILNIELQSKKKDYFSSVDLAEQASDVIGNAAVFDLVKLLQSECEGGSLIKCLEQGDNSVLKLFSNDDELVEEWTTKFKSILNNEKFTSHKLAKQFYFPVGPDQYHLLSPLFSSSLAQAMHQRIIEARFSDQSKEAKAAHKAGRWHPTVRVLYLDTAVQHIGGTKPQNISYLNSVRGGKVWLLPCGAPSWKNIQKPPIKYRSIFHDRSEFTVLARNNLWQMQLYLLGVKPLSNTMDIRAARLACCDEIIDILFNYVAEIQNLDGTNGWSDAEDCKLKRSEQLWLDPTRAMDDPVFKLEREKEDWKQEVSQDFGYWLNRWLQHDELVFGYVEQREWSSLFKQRLREFEQGSLETSS
>NZ_CP006783.1|WP_002211868.1|928751_929702_+|type-I-F-CRISPR-associated-protein-Csy2
MSSLIVLHQVRVENANAIAGLTYGFPAITHFLGYSHALSRKLQSSHGLTLRGCAVICHYQQVHAYLSGWDYVFSLTRNPLTKEAKTAAFNEEGRMHMTVSLVIECDGTIANGDDGANALEKHLASLCLTQRLAGGTITNIRRVKVINYPETEVATRRLLCRLLPGFALLDRSELLAEHLNRLRQTNPQAEMLDAWLDFSALKIQAIPPQSDTPVESGAPAPWGYVGKPAAGYLVPIVTGYRAISPLYAPGEVDKTRDPHTPFRFVESLYGIGEWRGLHRITDLRQLLWGYHQEGDNYLCRCALPASVDTYLLNDEE
>NZ_CP006783.1|WP_002211867.1|929719_930724_+|type-I-F-CRISPR-associated-protein-Csy3
MAKATIKTASVLAFERKLSNSDAMMYAGNWGQTDNWQPIIIKEKAVRGTISNRLKNALASDPAKLDAEIQKANLQRVDVAALPFDTDTLKMSFTLRVLGNLATPSVCNDQEYQAELASVINGYISEQSFSVLAARYAENLANGRFLWRNRVGAEDIKVCITSQTKSYQFDSNEFSLRQFSQPSKELTALAQEIEQGLAGNGFAFFTVDAFVRLGNGQEVFPSQELVLDSNSKKSKVLYQIDGIAALHSQKVGNALRTIDDWYPDATELALGPIAVEPYGSVTSRGKAYRQPKQKMDFYTLLDNWVTKGTVPAVEQQHYVMATLIRGGVFGEKGE
>NZ_CP006783.1|WP_002211866.1|930734_931289_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYLDIRVLPDPEFSAQTLLEALFAKLHRALVATIPGRVGVSFPTAGKTLGSQLRLHGSRGDLLELQSAGWLKGLQDYCECSEILPVPADVKHRTIRRVQVKSSAQRLRRRSVSKGWLTEEQARLRIPDSHDKRCDLPFLRLKSRSSEQYFLLFIEQGTLQASATTGEFSAYGLSVNATIPWF
>NZ_CP006783.1|WP_016674094.1|931366_932386_-|aldo/keto-reductase
MDYIKLGHCGLQVSRLCLGTMNMGSKQWKPWVFDKAESTPLIKHALDCGINFIDLADFYSAGVGEEVVGGIVKNLMSRDELVLTTKVGYPIGHGPNNQGHSRKHIMASIDASLKRLGTDYIDIYMLHYFDINTPVEETWSAMNDIIHSGKARYTGVSTMFTWQLSKILWCCERNGFAKPINMQLQLNCAYREEEREMIPQCRDQGLGISAFSPLARGLLSCDFSSVRNKTDFFTQEMYADVTSLNIAQSVERVAKNRGITPAQVAQAWVLNHPGTDCMLVGADTIEQINSAVTALRISLNAEEHFELERNYTPCDVINDYTAGQRIAREARPPSGIFAP
>NZ_CP006783.1|WP_002211864.1|932396_932900_-|formaldehyde-activating-enzyme
MQMYIGEGFAGNGVNAAHINIMIGPRDGVVGQAFAASLASPSQGHYPFIVVIKPNVAAKPMTLYVNKAEIRSELHGRATWGASQAAVAKAVAEALLANLFPPEAEDDWCIITANWVNIDCDDIDEVYRNNYRACTTALHAAMAKTPKRDQLTHALTQLSNPFFTPKA
>NZ_CP006783.1|WP_002211863.1|932946_934305_-|MFS-transporter
MQTLPSEKIRMDDVPLNRFHIRIAGLTFGAHFIDGYILGLIGFALIQLKPIMALTPLWEGLLGSAALIGLFLGSLILGWISDYIGRQKIFSFSFVIITLASALQFFASTPEQLFILRVIVGIGIGGDYSVGHTLLAEFSPRKHRGVLLGAFSVIWTFGYVSASFVGHYLSMVSPEAWRWLLSSAALPALLILLVRIGTPESPRWLMGKGREDDAMAIVHKYFGPNVTLIDEEPATSTRRFLSLFGRKYWRRTAFNSLFFVCLVIPYFAIYTFLPSILNVMALSQNFATDLLLNGLLVVGALVGIVLTAFCSRRSFLISSFIFLATCLLLLSILPSNQTFWLIALFAAFTLVMSAVSNLVGVFPAESFPTEVRSMGVGFATSMSRLGSAIGTSLLPLAIVNYGMPVTTTLLAFVLIIGAIVSIAWAPETKGLTLVDASQSATTPRPPSSIIPN
>NZ_CP006783.1|WP_002216551.1|934428_934638_+|hypothetical-protein
MVIGDLLTETDRLFQKRTAAMDDLFSSPGPVRLILFVMAMCQPKYKAASAFYAYPSEKKVRDPPLNSYK

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Crispr_ID: NZ_CP006783_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006783_3

1902841-1903169

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRT
GTTCACTGCCGCACAGGCAGCTTAGAAA	PILER-CR

5 spacers

DEDDh

The CRISPR arrays of NZ_CP006783_3

>merge|NZ_CP006783|3|1902841-1903169|CRISPRCasFinder,CRT,PILER-CR
TTATTGGGCTGCCTGTGCGGCAGTGAACGTTATACCCCGCGCAGGGAGTGAAGCGTTGACTTTCTAAGCTGCCTGTGCGGCAGTGAACTTAAGTTCTTTTTGTCAGCATCTTTAATAAATTTTCTAAGCTGCCTGTGCGGCAGTGAACCTGAAATACAAATAAAATAAATCGTCGAACATTTTCTAAGCTGCCTGTGCGGCAGTGAACTTGGCAATCATGTTTGGCTGCGCTTGGTTAAACTTTCTAAGCTGCCTGTGCGGCAGTGAACTGTCAGGCTGGGACTCTGATTTTTCAATTCGTTTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP006783|3|3|1902841-1903169|CRISPRCasFinder
TTATTGGGCTGCCTGTGCGGCAGTGAAC	GTTATACCCCGCGCAGGGAGTGAAGCGTTGAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTAAGTTCTTTTTGTCAGCATCTTTAATAAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTGAAATACAAATAAAATAAATCGTCGAACAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGGCAATCATGTTTGGCTGCGCTTGGTTAAAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGTCAGGCTGGGACTCTGATTTTTCAATTCGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP006783|3|3|1902841-1903169|CRT
TTATTGGGCTGCCTGTGCGGCAGTGAAC	GTTATACCCCGCGCAGGGAGTGAAGCGTTGAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTAAGTTCTTTTTGTCAGCATCTTTAATAAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTGAAATACAAATAAAATAAATCGTCGAACAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGGCAATCATGTTTGGCTGCGCTTGGTTAAAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGTCAGGCTGGGACTCTGATTTTTCAATTCGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP006783|3|3|1902901-1903169|PILER-CR
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTAAGTTCTTTTTGTCAGCATCTTTAATAAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTGAAATACAAATAAAATAAATCGTCGAACAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGGCAATCATGTTTGGCTGCGCTTGGTTAAAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGTCAGGCTGGGACTCTGATTTTTCAATTCGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006783.1\|WP_002211895.1\|1912725_1914057_+\|histidinol-dehydrogenase	unknown	unknown	gnl\|CDD\|234853
NZ_CP006783.1\|WP_002211896.1\|1911822_1912722_+\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234781
NZ_CP006783.1\|WP_002211916.1\|1889710_1890553_-\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP006783.1\|WP_002211905.1\|1899973_1901083_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187547
NZ_CP006783.1\|WP_002209743.1\|1897643_1898852_-\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|225865
NZ_CP006783.1\|WP_002211917.1\|1888401_1889679_-\|L-fuconate-dehydratase	unknown	unknown	gnl\|CDD\|239440
NZ_CP006783.1\|WP_011906252.1\|1901375_1902806_+\|exodeoxyribonuclease-I	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236979
NZ_CP006783.1\|WP_002216312.1\|1905513_1906605_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|182570
NZ_CP006783.1\|WP_002216388.1\|1894528_1897681_+\|inverse-autotransporter-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|378762
NZ_CP006783.1\|WP_002217522.1\|1899222_1899540_-\|DUF496-family-protein	unknown	unknown	gnl\|CDD\|180070
NZ_CP006783.1\|WP_002211900.1\|1908460_1909456_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP006783.1\|WP_002216311.1\|1906890_1907784_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP006783.1\|WP_002211902.1\|1903663_1905055_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP006783.1\|WP_002211898.1\|1910289_1911117_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187576
NZ_CP006783.1\|WP_002211911.1\|1892199_1893504_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP006783.1\|WP_157131899.1\|1909844_1910135_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374732
NZ_CP006783.1\|WP_002231208.1\|1911492_1911540_+\|his-operon-leader-peptide	unknown	unknown	unknown
NZ_CP006783.1\|WP_002211912.1\|1891768_1892191_+\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
NZ_CP006783.1\|WP_025471041.1\|1907741_1908464_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP006783.1\|WP_002216393.1\|1890600_1891341_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187626

Protein	Function_ID	Function_description	E-value
NZ_CP006783.1\|WP_002211895.1\|1912725_1914057_+\|histidinol-dehydrogenase	gnl\|CDD\|234853	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed.	0
NZ_CP006783.1\|WP_002211896.1\|1911822_1912722_+\|ATP-phosphoribosyltransferase	gnl\|CDD\|234781	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed.	6.63843e-161
NZ_CP006783.1\|WP_002211916.1\|1889710_1890553_-\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	8.96038e-107
NZ_CP006783.1\|WP_002211905.1\|1899973_1901083_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187547	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs. SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.89947e-61
NZ_CP006783.1\|WP_002209743.1\|1897643_1898852_-\|IS256-family-transposase	gnl\|CDD\|225865	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.39969e-152
NZ_CP006783.1\|WP_002211917.1\|1888401_1889679_-\|L-fuconate-dehydratase	gnl\|CDD\|239440	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.	0
NZ_CP006783.1\|WP_011906252.1\|1901375_1902806_+\|exodeoxyribonuclease-I	gnl\|CDD\|236979	PRK11779, sbcB, exonuclease I; Provisional.	0
NZ_CP006783.1\|WP_002216312.1\|1905513_1906605_-\|oxidoreductase	gnl\|CDD\|182570	PRK10586, PRK10586, putative oxidoreductase; Provisional.	0
NZ_CP006783.1\|WP_002216388.1\|1894528_1897681_+\|inverse-autotransporter-beta-barrel-domain-containing-protein	gnl\|CDD\|378762	pfam11924, IAT_beta, Inverse autotransporter, beta-domain. This is a family of beta-barrel porin-like outer membrane proteins from enteropathogenic Gram-negative bacteria. Intimins and invasins are virulence factors produced by pathogenic Gram-negative bacteria. They carry C-terminal extracellular passenger domains that are involved in adhesion to host cells and N-terminal beta domains that are embedded in the outer membrane. This family represents the beta-barrel porin-like domain in the outer membrane that can be found in intimins, invasins and some inverse autotransporters.	1.47456e-126
NZ_CP006783.1\|WP_002217522.1\|1899222_1899540_-\|DUF496-family-protein	gnl\|CDD\|180070	PRK05423, PRK05423, DUF496 family protein.	5.26004e-59
NZ_CP006783.1\|WP_002211900.1\|1908460_1909456_+\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	1.22935e-72
NZ_CP006783.1\|WP_002216311.1\|1906890_1907784_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	3.90601e-98
NZ_CP006783.1\|WP_002211902.1\|1903663_1905055_-\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	3.72025e-45
NZ_CP006783.1\|WP_002211898.1\|1910289_1911117_-\|SDR-family-oxidoreductase	gnl\|CDD\|187576	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4. Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.54107e-68
NZ_CP006783.1\|WP_002211911.1\|1892199_1893504_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.17308e-74
NZ_CP006783.1\|WP_157131899.1\|1909844_1910135_+\|hypothetical-protein	gnl\|CDD\|374732	pfam16695, Tai4, Type VI secretion system (T6SS), amidase immunity protein. Tai4 is a new form of autoimmunity protein for a type VI secretion system, T6SS. T6SS has roles in interspecies interactions, as well as higher order host-infection, by injecting effector proteins into the periplasmic compartment of the recipient cells of closely related species. Pseudomonas aeruginosa produces at least three effector proteins to other cells and thus has three specific cognate immunity proteins to protect itself. Tae4, or type VI amidase effector 4, in Enterobacter cloacae has a cognate Tai4 or type VI amidase immunity 4 protein. The effector is Tae4, pfam14113.	4.0065e-14
NZ_CP006783.1\|WP_002211912.1\|1891768_1892191_+\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	5.0494e-57
NZ_CP006783.1\|WP_025471041.1\|1907741_1908464_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	3.07812e-87
NZ_CP006783.1\|WP_002216393.1\|1890600_1891341_-\|SDR-family-oxidoreductase	gnl\|CDD\|187626	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs. Human DHRS6, and similar proteins. These proteins are classical SDRs, with a canonical active site tetrad and a close match to the typical Gly-rich NAD-binding motif. Human DHRS6 is a cytosolic type 2 (R)-hydroxybutyrate dehydrogenase, which catalyses the conversion of (R)-hydroxybutyrate to acetoacetate. Also included in this subgroup is Escherichia coli UcpA (upstream cys P). Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Note: removed : needed to make this chiodl smaller when drew final trees: rmeoved text form description: Other proteins in this subgroup include Thermoplasma acidophilum aldohexose dehydrogenase, which has high dehydrogenase activity against D-mannose, Bacillus subtilis BacC involved in the biosynthesis of the dipeptide bacilysin and its antibiotic moiety anticapsin, Sphingomonas paucimobilis strain B90 LinC, involved in the degradation of hexachlorocyclohexane isomers...... P).	1.05065e-117

>NZ_CP006783.1|WP_011906252.1|1901375_1902806_+|exodeoxyribonuclease-I
MSDKNKQPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMITGITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDVYATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVAPLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKCPVLAPAKTLLPENSDRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVTDDVDTQLYNGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLNDSEQQRWLQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLVS
>NZ_CP006783.1|WP_002211905.1|1899973_1901083_-|NAD-dependent-epimerase/dehydratase-family-protein
MKKLLLTGATGFLGGAVLEKLLLASSDFNYLLLVRANTPEQGLMRIRENLEKFYLPNELINKININHVLLGDLAEPDSFINDVRIDDVTHVINCAAIASFGNNPLIWKVNVEGTLAFGKRMAQVAGLQRFVHVGTAMACTPEADTVVDERVLSTENDAHLVEYTKSKSAIECLLAEHCPTLPLVFARPSIVVGHTRLGCQPSSSIFWVFRMALMLRKFMCSLDDHIDVIPVDYCADALLYILEYPNLPDDIYHISAGEKGSVSFSEIDQAMSVAAKQKPVGVNYSQVEYTALVQMRNQLKGIFGPCNERLMLKAMRLYGSFAMLNVRFSNERLLSLGMPRTPRFTDYIARCVESSHGMTIQQQMAVDFK
>NZ_CP006783.1|WP_002217522.1|1899222_1899540_-|DUF496-family-protein
MDNASKPTFQDVLEFVRMFRRKNKLQREIVDNEKKIRDNQKRVLLLDNLSEYIKPGMSIEEVQAIIANMRGDYEDRVDDYIIKNADLSKERRELSKKLKAMGEVK
>NZ_CP006783.1|WP_002209743.1|1897643_1898852_-|IS256-family-transposase
MDEKKLKALAAELAKGLKTEADLNAFSRMLTKLTVETALNAELTEHLGHEKNTPKSGSNTRNGYSSKTLLCDDGEIELNTPRDRENTFEPQLIKKNQTRITQMDSQILSLYAKGMTTREIVATFKEMYDADVSPTLISKVTDAVKEQVAEWQNRQLDALYPIVYMDCIVVKVRQNGSVINKAVFLALGINTEGQKELLGMWLAENEGAKFWLSVLTELKNRGLQDILIACVDGLKGFPDAINSVYPQTHIQLCIIHMVRNSLKYVSWKDYKAVTSGLKMVYQAPTEEAALMALDKFAEAWDDKYPQISKSWRTHWENLNTFFGYPPDIRKAIYTTNAIESVNSVIRAAIKKRKVFPTDDSVRKVVYLAIKDASKKWSMPIQNWRLAMSRFIIEFGDRLSDHL
>NZ_CP006783.1|WP_002216388.1|1894528_1897681_+|inverse-autotransporter-beta-barrel-domain-containing-protein
MSLYRISSLHQAKQLNKNKQLNKTRISKSVVWANIVIQAIFPLSIAFTPAVMAAETVGASDEKPRSASQAEQSTANAATRLASILTNDDSAKQASSIARGTAANAGNEALQKWFNQFGSAKVQLNLDEKLSLKGSQLDVLLPLTDSPDLLTFTQLGGRYIDDRVTLNVGLGQRHFFAQQMLGYNLFIDHDASYSHTRIGVGAEYGRDFINLAANGYFGVSGWKNSPDLDKYDEKVANGFDLRSEAYLPTLPQLGGKLIYEQYFGDEVGLFGVDNRQKNPLAVTLGVNYTPIPLFTVGVDHKMGRAGMNDTRFNLGFNYAFGTPLTHQLDSDAVAIKRSLMGSRYNLVDRNNQIVMKYRKQNRVTLELPARVSGAARQTMPLVANATAQQGIDRLEWEASALTLAGGKITGSGNNWQITLPSYLSGGEGNNTYRISAIAYDTLGNASPVAYSDLVVDSHGVNTNASGLTAAPEILPANASASSVIEFNIKDNANQPITGIADELAFSLELVELPEELAKAKARSVPLKTVSHTLTKITESAPGIYQATLTSGSKPQLINITAQINGVPLADVQTKVTLIADESTATLQTSSLQIITNGSLADDTDANQIRAVVVDAYGNKLSGVQVNFTVGNNAKITETTLSDKQGGVTAAITSTKAGTYTVTAELNGVTQQIDVNFIPDAGTATLDDSDEYKLQWVTNGQVADGESTNSVQLTVVDKFGNTVPGVDVAFTTDIGAIISEVTPTDANGVATAKIISSQAKSHTVKATLNRKEQTVEVNFIADTATAEITANNFTVEVDGQVAGSGTNQVQALVVDKKGNPVANMTVNFTATNGVVVETTSAKTDENGKVTTNLSMTNVGGTISTVTATMINSANVTSTQDKPVIFYPDFTKATLNTPANTYSGFNINSGFPTTGFKNTHFQLSPHGITGANSDYDWVSSHPNVSVSNTGAITLQDNPGGKVTITATWKHDSSKVFTYDFTLNYWVGLYSSTNLSWAQANASCINAGMRLPTNREVSAGQDVRGVGSLLSLSIILCNCHRIKGDRSGGHRTR
>NZ_CP006783.1|WP_002211911.1|1892199_1893504_-|MFS-transporter
MSNFNHYPDPTLNSAIKKAWYRLMPLMFIMYFVAFIDRINVGFAKDAMSADIGLSQSAFALGAGIFFAAYALFGIPANLMMNKLGAKVWLSSTTVVWGLLSAGTGLVSNEYQFVILRFLLGVAEAGFYPGILLLASIYFPNKIRASVIGIFVLGVPAALTLGSPISGALLDMQGFLGQPGWFWMFLLEGLPAVGLGIFAFFYLDDSPATARYLNPEEKQALLTQLSIEQSDTESSSVKAVLLSPKVWHLALIYGTIQVGVYGLIFFLPSQVATLLGSTLGFKESLVAAIPWAFSALGVYYIPRYADRKTHRRNPIATLNLVVAAIGLIISAYASPVLAIAALCLCAIGFLAVQPIFWTFPAQILSGKALAAGIGFCTTMGAFFSFLAPIIRVEAESQFNSPPAGLITLALFSLLSATLIFSLKFWPAKATAEVI
>NZ_CP006783.1|WP_002211912.1|1891768_1892191_+|thiol-disulfide-oxidoreductase-DCC-family-protein
MSAPLPYIKPGERVIIYDGVCALCTGWVNFLIRHDRRHTVRLSAVQSKKGHALLEWAGLPTDKINTLVLIENQQVYLRSEAIFRVIANLPWPWRILGVLRIFPRPLRDRCYDGIALNRYRLFGRYDAVRKLKADHERRFL
>NZ_CP006783.1|WP_002216393.1|1890600_1891341_-|SDR-family-oxidoreductase
MNLKGKKALVTAAGQGIGFNTATLFARKGAEVIASDINIAALSNIPGITAVSLDVTDTLAINDVAQAIGPIDVLFNCAGVVHSGDILTCSEQEWQFALDLNVTAMFHMIRAFLPGMIACQQGSIINMSSVASSIKGVPNRFAYSTSKAAVIGLTRSVAADYVTQGIRCNAICPGTVESPSLRQRIAVQAHAEGRSEADVFQAFAARQPIGRIGKAEEIAQLALYLASDASAYTTGTIHIIDGGWSN
>NZ_CP006783.1|WP_002211916.1|1889710_1890553_-|fumarylacetoacetate-hydrolase-family-protein
MKLLRYGPVGEERPALLDELGEIRDLSAHIEDISGKFLLPATLYKLRQLDSASLPLVRGEQRLGACVGHVGKFICVGLNYADHAAETGAEIPQEPVIFNKWTSAIIGPNDDIEIPRNSVKTDWEVELGVVIGTGGRYIGEANAMSYVAGYCVVNDISEREFQLEHGGTWDKGKGCDTFGPIGPWLVTRDEIPDPHQLGLWLDVDGRRYQNGSTRTMIFKIPQIISYLSRFMSLQSGDVISTGTPPGVGLGQKPPVYLHAGQIMRLGIEGLGEQCQKTIQA
>NZ_CP006783.1|WP_002211917.1|1888401_1889679_-|L-fuconate-dehydratase
MTIITALRTEDVRFPTSLELDGSDAMNPDPDYSAAYVILDTDNPALSGHGLTFTIGRGNEICCVAIHALEHLIVGRDLASMTANMGKFWREFTSDSQLRWIGPEKGAIHLATGAVINAVWDLWSKAEGKPLWRLVADMSPEELVRCIDFRYITDCITPEEALTLLQQRAHNKALRLEKLQDEGYPCYTTSAGWLGYPDDKLRRLCQDAVDAGFDYLKLKVGRDLEDDIRRVRITREVLGPDRKLMIDANQIWETNEAIPWVNQLAFANPWFIEEPTNPDDIEGHRRIRQGVAPVKVATGEMCQNRIMFKQFIMREAIDVVQIDACRLGGVNEVLAVMLMAAKYDLPVCPHAGGVGLCEYVQHLAMIDYLCIAGTDKGRVIEYVDHLHEHFVHPCVIKNAAYMPPEQPGFSIEMHQSSIEKYRFRV
>NZ_CP006783.1|WP_002211902.1|1903663_1905055_-|APC-family-permease
MAHDATVAVGTNQTGTNNRVQLRKTLTLVQVVMMGLAYLQPMTIFDTFGIVSGLTDGHVATSYAIALIAVLFTAVSYGKLVKRFPSAGSAYTYAQKSISPNVGFMVGWSSLLDYLFMPMINILLAKIYLEAIFPGVPSWIFVGALVSLMTLFNLRGINIVANLNSVIVVVQVAIMVVFMGLLIHGVYQGEGAGTLVSARPFYSENAHLVPMITGATILCFSFLGFDGISSLSEETPNAGKVIPKAIFLTALIGGIIFIAVSYCLQLYFPDISRFTDPEASQPEIMLFVAGKFFQSVILCFSCVTVLASGMAAHAGVSRLLYVMGRDGVFPEKVFGYVHPKWRTPAINVLLVGGVALSAISFDLVTATALINFGALVAFTFVNLSVIAQFYVRERRNSTFKDHFNYLILPMIGAGTVGVLWVNLESSSMTLGLVWGAIGLSYMVWKTRAFRRALPQFTEEPAQL
>NZ_CP006783.1|WP_002216312.1|1905513_1906605_-|oxidoreductase
MSANAIRVQVGPANYFSFPGAIDKLSEFYPQAALDKALWIYGERALAAAQDYLPKAFHGPQAVRAKFSTHCSQSTVADLVSAAGGDRQVVIGIGGGAVLDTAKVVARQLGVPLVAIPTIAATCAAWTPLSVWYNEAGQALNFEIFNDANHLVLVEPRIMLHAPVEYLLAGIGDTLAKWYEAVVLSPQPETLSLTVRLGLQAALEIRNVLLKQSEAALQAVAQGELTQDFLDVVDAIIAGGGMVGGLGERYTRVAAAHAVHNGLTLLPQTEHFLHGTKVAYGILVQTALLGQDEVLRSLIVAFNQLGLPTHLAALDVDINDREAIDRVIGRILKPGESIHYLPIALNSEKVWAAIEQVEIAAQH
>NZ_CP006783.1|WP_002216311.1|1906890_1907784_+|sugar-ABC-transporter-ATP-binding-protein
MSSIPPSRLEMRNISISFSGFHALQEVDFTLEGGSTHALIGANGAGKSTLMAILSGAHNHYRGEIFIDGQPIDIHSPRQARQHGIHVVQQEVDVALIPTLSVAENIMLDELADRGHLFNWPQLYRQAEALLEQLELKLNVRQRLESCTLAEKQQVLLARALSHQCRFLILDEPTAPLDQEESARLFRVVRRLQSEGIGIVFISHRIHELREVCDQLTVLRDGRRVSHDTMEGMSGEQIVEKMLGHTLEDISPLGERQSAAKHGCRKHYCRKHCYRSAAYMISISCAISPSHYIRAKF
>NZ_CP006783.1|WP_025471041.1|1907741_1908464_+|sugar-ABC-transporter-ATP-binding-protein
MRDISLTLHQGEILGIAGLAGAGKTELCKALFGDTPSTLERGELSGKAWRPRSPDRSVAQGLALVPEERRKEGIFIDEGIPMNLSVAADDSFSRWSLFSRRQELSWAKELIERLGIRTSSPQQKLAHLSGGNQQKVAHLSGGNQQKVAIGKWLRGDAQVLIFDEPTKGVDIKAKQDLFSLIDQLAQQGKGIIYASGEFSELVGLCDRICVLWDGRIVAELNAAEVDEETLLLFSTGGTPQ
>NZ_CP006783.1|WP_002211900.1|1908460_1909456_+|ABC-transporter-permease
MSKELPLPDVQPWRHQLFDFLYKWGMLLTVVALIALFGLASDNFLDPNNIINILRSIAIVTVIAIGVSISLSIGGFDLSVGSTASLANAVVVSLFVWYGFGTTGAIILTLLICTLVGLFNAFLIVVLKIPDMLATLASLFVIQGVAMTYSRGGSITQSMLLPSGDMAEGVIPEIFSALGQVPVIVLIMLAVTVVVQLYLSLTKHGRRMYAIGGNPQAARLAGIRTVRYRVLAYVLSAQLAALGGILLASRIGSSQVNAGSGYLMDAVAAAYIGFSLAGSGKPNAFGTLIGAIILGVLQNGLVMLSVPYYAMDIIKGLVLAMALALTYIQKR
>NZ_CP006783.1|WP_157131899.1|1909844_1910135_+|hypothetical-protein
MQQKNNLENFALSICLAEGFPDGEINSEAFSAVGAYVELGAYPVEAYEEVSELAKKFLEKKYISKNGESKLTVMKCIDLSQSSELSAIKDKYTRHI
>NZ_CP006783.1|WP_002211898.1|1910289_1911117_-|SDR-family-oxidoreductase
MKKVAIIGLGWLGMPLAQSLSRRGIDVVGSKTTPDGVDAARMSGINCYPLVLTPELICEPDDLAQLMAVDALVITLPASRTTAGGDHYFQAVQQVVDSALAFGVPRIIFTSSTSVYGETRGRIKESSPLQPVTVAGKTLMALEQWLHQLPHTSVDILRLAGLVGTDRHPGRFLAGKTGVKGGSQGVNLVHQEDVIAAIELLLNRPKGGHLYNLCAPIHPRKRDFYPACARALQLTPPEFAVEEQEGANREIDGSKICSELGFEYLYPDPSRMPLN
>NZ_CP006783.1|WP_002231208.1|1911492_1911540_+|his-operon-leader-peptide
MNRVQFNHHHHHHPD
>NZ_CP006783.1|WP_002211896.1|1911822_1912722_+|ATP-phosphoribosyltransferase
MLDKTRLRIAMQKSGRLSDESQELLSRCGIKINLQQQRLIAFAENMPIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLNRRAQGDDPRYFTLRRLDFGGCRLSLAAPLDAEYTGPQCLQDTRIATSYPHILKQYLDKQGVRFKSCLLNGSVEVAPRAGLADAICDLVSTGATLEANGLREVEVIYRSKACLIQRDGEMSVDKQQLIDRLMTRIQGVIQARESKYIMMHAPSERLDEIITLLPGAERPTILPLAGDKSRVAMHMVSSETLFWETMEKLKALGASSILVLPIEKMME
>NZ_CP006783.1|WP_002211895.1|1912725_1914057_+|histidinol-dehydrogenase
MQPTNFNTLINWQQCSEEQQKALLSRPAINASERITAAVSDILDRVKAEGDSALRDFSQRFDHVQVADIRITASEIAAASARLSDDVKHAMAQAVRNIEIFHNAQKMPVVDVETQPGVRCQQITRPIASVGLYIPGGSAPLPSTVLMLGTPARIAGCQRVVLCSPPPIADEILYAAQLCGIQEVFQIGGAQAIAAMAFGSESVPKVHKIFGPGNAYVTEAKRQVSQRLDGAAIDMPAGPSEVLVIADSGATPAFIAADLLSQAEHGPDSQVILLTPDAAIAQAVAVEVEQQLALLSRADIARQALESSRLIVTNDLQQCIDISNAYGPEHLILQIRQPEEIIDQIDNAGSVFMGDWSPESAGDYASGTNHVLPTYGYTSTYSSLGLADFVKRMTVQQLTPQGLLGLASTIETLAQAEQLTAHKNAVTLRVTALNNALTAVNKE

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Crispr_ID: NZ_CP006783_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006783_4

2028765-2028886

Orphan

Consensus_repeat	Method
CAATTGATTATATCGATTAATATTGGCATTAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006783_4

>merge|NZ_CP006783|4|2028765-2028886|CRISPRCasFinder
CAATTGATTATATCGATTAATATTGGCATTAAGAGATTTAATACTGCAATATGTTTTTTTGGAAAAAACTCAATCCTCCCCCTCCACTACAATTGATTATGTCGATTAATATTGGCATTAAG

>NZ_CP006783|4|4|2028765-2028886|CRISPRCasFinder
CAATTGATTATATCGATTAATATTGGCATTAAG	AGATTTAATACTGCAATATGTTTTTTTGGAAAAAACTCAATCCTCCCCCTCCACTA
CAATTGATTATGTCGATTAATATTGGCATTAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006783.1\|WP_002221095.1\|2040647_2042702_-\|DNA-helicase-IV	unknown	unknown	gnl\|CDD\|182930
NZ_CP006783.1\|WP_002213060.1\|2040122_2040587_+\|methylglyoxal-synthase	unknown	unknown	gnl\|CDD\|179969
NZ_CP006783.1\|WP_002213036.1\|2028189_2028408_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006783.1\|WP_002213030.1\|2025389_2026127_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187594
NZ_CP006783.1\|WP_002228570.1\|2021351_2021792_-\|lipocalin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|372819
NZ_CP006783.1\|WP_002213039.1\|2030038_2032456_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366708
NZ_CP006783.1\|WP_002213038.1\|2029138_2029885_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180440
NZ_CP006783.1\|WP_002213049.1\|2036482_2036761_-\|acylphosphatase	unknown	unknown	gnl\|CDD\|184675
NZ_CP006783.1\|WP_002213056.1\|2038531_2038948_-\|CoA-binding-protein	unknown	unknown	gnl\|CDD\|224745
NZ_CP006783.1\|WP_002213017.1\|2021065_2021314_-\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|180851
NZ_CP006783.1\|WP_002213058.1\|2039263_2039944_+\|DUF2057-family-protein	unknown	unknown	gnl\|CDD\|179619
NZ_CP006783.1\|WP_002213034.1\|2027401_2027926_-\|beta-hydroxyacyl-ACP-dehydratase	unknown	unknown	gnl\|CDD\|223835
NZ_CP006783.1\|WP_002213025.1\|2022669_2023422_-\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|235936
NZ_CP006783.1\|WP_002213032.1\|2026128_2027412_-\|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein	unknown	unknown	gnl\|CDD\|238430
NZ_CP006783.1\|WP_002213046.1\|2036101_2036431_+\|sulfurtransferase-TusE	unknown	unknown	gnl\|CDD\|225472
NZ_CP006783.1\|WP_011906264.1\|2024135_2025374_-\|hydroxymethylglutaryl-CoA-synthase-family-protein	unknown	unknown	gnl\|CDD\|225959
NZ_CP006783.1\|WP_002213026.1\|2023423_2024143_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|223955
NZ_CP006783.1\|WP_002213024.1\|2021878_2022667_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_CP006783.1\|WP_002213054.1\|2038105_2038423_+\|heat-shock-protein-HspQ	unknown	unknown	gnl\|CDD\|184526
NZ_CP006783.1\|WP_002213052.1\|2036854_2038045_+\|23S-rRNA-(cytosine(1962)-C(5))-methyltransferase-RlmI	unknown	unknown	gnl\|CDD\|185082

Protein	Function_ID	Function_description	E-value
NZ_CP006783.1\|WP_002221095.1\|2040647_2042702_-\|DNA-helicase-IV	gnl\|CDD\|182930	PRK11054, helD, DNA helicase IV; Provisional.	0
NZ_CP006783.1\|WP_002213060.1\|2040122_2040587_+\|methylglyoxal-synthase	gnl\|CDD\|179969	PRK05234, mgsA, methylglyoxal synthase; Validated.	2.55286e-93
NZ_CP006783.1\|WP_002213030.1\|2025389_2026127_-\|SDR-family-oxidoreductase	gnl\|CDD\|187594	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs. This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	2.26541e-68
NZ_CP006783.1\|WP_002228570.1\|2021351_2021792_-\|lipocalin-like-domain-containing-protein	gnl\|CDD\|372819	pfam13924, Lipocalin_5, Lipocalin-like domain. This family includes domains distantly related to lipocalins. However, they do contain the important GXW motif in the first strand. The protein in this family include aln5, which is involved in biosynthesis of alnumycin. The family also includes the ZFK protein from Trypanosoma brucei which is a protein kinase. This domain is at the C-terminus of that protein. The domain is also found as the C-terminal domain in StiJ a protein involved in producing stigmatellin. This domain has been assumed to catalyze a final cyclisation reaction.	5.67247e-46
NZ_CP006783.1\|WP_002213017.1\|2021065_2021314_-\|acyl-carrier-protein	gnl\|CDD\|180851	PRK07117, PRK07117, acyl carrier protein; Validated.	4.77778e-09
NZ_CP006783.1\|WP_002213038.1\|2029138_2029885_+\|SDR-family-oxidoreductase	gnl\|CDD\|180440	PRK06172, PRK06172, SDR family oxidoreductase.	1.01866e-70
NZ_CP006783.1\|WP_002213049.1\|2036482_2036761_-\|acylphosphatase	gnl\|CDD\|184675	PRK14426, PRK14426, acylphosphatase; Provisional.	1.02172e-54
NZ_CP006783.1\|WP_002213056.1\|2038531_2038948_-\|CoA-binding-protein	gnl\|CDD\|224745	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only].	1.53332e-71
NZ_CP006783.1\|WP_002213034.1\|2027401_2027926_-\|beta-hydroxyacyl-ACP-dehydratase	gnl\|CDD\|223835	COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism].	1.09929e-42
NZ_CP006783.1\|WP_002213058.1\|2039263_2039944_+\|DUF2057-family-protein	gnl\|CDD\|179619	PRK03641, PRK03641, DUF2057 family protein.	4.09411e-122
NZ_CP006783.1\|WP_002213039.1\|2030038_2032456_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366708	pfam01565, FAD_binding_4, FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidizes the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan.	1.41205e-31
NZ_CP006783.1\|WP_002213025.1\|2022669_2023422_-\|enoyl-CoA-hydratase	gnl\|CDD\|235936	PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated.	2.57932e-133
NZ_CP006783.1\|WP_002213032.1\|2026128_2027412_-\|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein	gnl\|CDD\|238430	cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.	2.93328e-136
NZ_CP006783.1\|WP_002213046.1\|2036101_2036431_+\|sulfurtransferase-TusE	gnl\|CDD\|225472	COG2920, DsrC, Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism].	2.4785e-71
NZ_CP006783.1\|WP_011906264.1\|2024135_2025374_-\|hydroxymethylglutaryl-CoA-synthase-family-protein	gnl\|CDD\|225959	COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism].	3.55303e-141
NZ_CP006783.1\|WP_002213026.1\|2023423_2024143_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|223955	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism].	1.17502e-35
NZ_CP006783.1\|WP_002213024.1\|2021878_2022667_-\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.49415e-40
NZ_CP006783.1\|WP_002213054.1\|2038105_2038423_+\|heat-shock-protein-HspQ	gnl\|CDD\|184526	PRK14129, PRK14129, heat shock protein HspQ; Provisional.	3.64231e-72
NZ_CP006783.1\|WP_002213052.1\|2036854_2038045_+\|23S-rRNA-(cytosine(1962)-C(5))-methyltransferase-RlmI	gnl\|CDD\|185082	PRK15128, PRK15128, 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI.	0

>NZ_CP006783.1|WP_002213036.1|2028189_2028408_-|hypothetical-protein
MYLLQQIELCPDQILHAWKISQNPQVSEVFEIEVVSSEEDAEEAVLFWKAYFSSLGETVIDGRHVGDTFSRF
>NZ_CP006783.1|WP_002213034.1|2027401_2027926_-|beta-hydroxyacyl-ACP-dehydratase
MKNTELNFLKTNFLFNQDITNELNTSFGQDIIKKMIPHREPFLMVDNVELINIECRLIKAIRRVDEKDPVFGGHFPNDPIYPGVLQQESMFQTALILMYFLLNETAIPPAEENIIHAVGTRVYDVFHLSAVRPGELMTIRCCITEYDTFLATAIVQITVNDQIVTVGKGEFHVF
>NZ_CP006783.1|WP_002213032.1|2026128_2027412_-|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein
MSSDRIVITGVAINTPIGDTLDLVGNNLLSGKSAIGYWRNFDTSNIYSKIGGQIPEYDIEGKLHAFSNRIPDIVLSRAEKVFKQTTKGVQLSVLMAMEAWLDAGLFEHIIDPFDCGIICGGHNLSDKYLLDQQKIFSDEPEFIDAFSGLNSLDTDHSSSVAQVLNTKGFAYLVGGTCATGNIAIQTAINAIKVDKKQVVAVVCPMASFHPMMLHSLTILEAICYSQYQDTPTKASRPYDINRSGFLPSEGGAVLIFEQAEHAKNRGAKIYAELLGASVNSDANHLGDPSHEGQVRVIQDVLKKCNISPEQVDYVSAHATSTKLGDIVELKSIKRVFGSHAEKLIINAPKSLLGHTMWASGVVEAAIAIWQMRQGEFHQSHNIETLDPAVELNVCASGNVKKEVNIFLNNSFGMGGINSASLFSRYHG
>NZ_CP006783.1|WP_002213030.1|2025389_2026127_-|SDR-family-oxidoreductase
MNLFISGGASGIGRSVVIAALSKGWNVGFSYHNNKEGAQQLLDIAVAEFPRQLCRAYQLDVIDSGAVEYVGDRLLVDFSNIDAVVCNAGIDLPGNLVSMTDEDWALVLNTNLTGTFYLIRYFLPLFLANKYGRIVTLSSLAKDGSSGQAAYAASKAGLVGLTKTTAKEYGHFGITANVVVPGLINTEIIGDDIKGIKNFFAQYAPVGRLGSPSEVAEAILFLVAKESSYVNGAVFNVTGGIDWVY
>NZ_CP006783.1|WP_011906264.1|2024135_2025374_-|hydroxymethylglutaryl-CoA-synthase-family-protein
MNSIGIEKISIYPSSLALKLSELAQARGGDNKYIQESLMVIKRSLVPQWEDAVTLAVNSAKDMLNDQDRSDIGLFIIATESGLDQEKAISTWAHRYLGLPATCRVFELKSACHAGAAALKMAESWISSGLNRGKKVLLINVDISNNMICHGKMEYSLGAGAIALLISDNPVFAVIETGKSGIHTHEVTDVIRPLLWKEVAFDVEASLFSYMDGLENAFEEYCHQTPEARESTYFNYNLYHVPFPGISKEAHKVLLELQGLFGKEALATSFKQKVMPSLYYAQKIGATYCGSIFLSLFSLMVKAPEIKSGDRIGVYSYGSGSCAEYFSMQVGDQAVEIAQQQGAALDILLTQRKILDVAAYEQLENARSAQMQGKDYRLDGDNLQDWYTHHYSGSGLLILERIDNHLRRYRYA
>NZ_CP006783.1|WP_002213026.1|2023423_2024143_-|enoyl-CoA-hydratase/isomerase-family-protein
MHEYVTVPIKFSPDSLADFENRFISALNDERYKVIVLIGGPTYFSMGMDLTYISTHYDADFVSQFCHILKMVRNSHKPVLAKVEGNVIAGGLALLSVVDFILSSDSASFSLPEVTFGITPTIAMSCLLERIRPHHLKYFVWSSSVISAKQALKWGLIDQINTLENLDQDIQVISNKLSRIPKSAIRESKLLLAEQYSFEESLDLGSHLLVERLNDAQTIEKIRHYLEDIKLFNDEYADD
>NZ_CP006783.1|WP_002213025.1|2022669_2023422_-|enoyl-CoA-hydratase
MKKIYLRKSDEGIAFMHINDPVNKNAIDDEFCLQLHGIVDTIKQDKTIKVLILVGLPDIFCTGGTEAFLQSLITHYKTNIEHEYANHLKHFLNIPIPVIAAMEGSATGGGLVLGLYADILVAAEESRYGMSFMNMGFTPGMGSTAMSKEAFGYYTGFEMMVTGNYIRGSELKGKCCFNYILPRAMVMEKAIELATSIAEKPRHSLELLKKYMSIDRRKMLEETSTIEAFMHHIAFNQSNIEQQIQDNYTG
>NZ_CP006783.1|WP_002213024.1|2021878_2022667_-|SDR-family-oxidoreductase
MLNNLSEMTVLVTGGTKGIGRATVESFVKAGAKVYGTYFWGDNLDELENHFSQYLNRPVFLQADISDEEITTQLIEKIAQENKKIDILILNAAFAPQFKDTYKFRGLLDSIEHNSWPLITYIDCIKQHFGQYPGYVVAITSEGHRSCHITGYDYVAASKAVLETLTKYIGARENIIINCISPGVVDTEAFELVFGKKAQAFIRKFDPDFIVSPEAVGNVSVALCSGLMDAVRGQVITVDNGRMFTDNFTKWIDMIETNFIEK
>NZ_CP006783.1|WP_002228570.1|2021351_2021792_-|lipocalin-like-domain-containing-protein
MSNPNRNLFLGRWKLESCIGNSGGIHIYPIGREPFGMLIYTEQYMMVFISSVERTQFSTEDIRAIPSEQIVADFPKFETYCGHYIVNHDEKIVTHFIDNSKIPNQIGTQFRRYFSFEHEKLVLKSIDSLLLNDESWLFELVWNKQE
>NZ_CP006783.1|WP_002213017.1|2021065_2021314_-|acyl-carrier-protein
MDRDHIASIVKKHIVNSIDGAKEHEIDLQKSMADYGASSLDIVSVVSGVMRELKIKIPRTELKNIKSINGLIDLFVTSSSES
>NZ_CP006783.1|WP_002213038.1|2029138_2029885_+|SDR-family-oxidoreductase
MKKTILITGALSGIGNTATKLFSEMGYNVVFSGRRPEEGRVILDDLKRINKDVLYVNADMNSESDIKHLIEMTLERFGSLDVAVNCAGTVGETAEIQAVTQDNFHLVFNTNVLGTLLAMKYQIPVMVERGKGSIINISSIAGLVGLPSTGIYVASKHAIEGLTKTAALEVATTGVRINSISPGPVEGKMFDRFLGHDENNKKAFIEMMPNKRFTTQEEVAHTIVFLAEDNVTAITGQTITIDGGYTAQ
>NZ_CP006783.1|WP_002213039.1|2030038_2032456_+|GNAT-family-N-acetyltransferase
MTTTLDIINSAKDLDPAEYRAFFLQSKAPLFYDLRFLIAAEQSPLLNVSKIFYLLARDEGRLIALVPLYLQEFRSADPLGLLISSAKLSIESEERGLFSHIIHCTDTTIPTLSHDPSLYARIFDAITAIAQAELARYFCFLNVQDGVLLREAQRNGLNINYMVDKFSIELDAFPDFDSFAQALPKYRRYEMVRQLRIFNRSDAKVRILAPPFDNEIEKLARLYYLTTQRLGTPYYWPESQLAVFCRLCGDLVRLIVVEQNGQIVSGFICFEEDGALHFWSAGMDDESSDFSPYTLGVSAVYRYAFEKGINLIECGRLNSHIKTRLGFKPKRLYSIVSQDLGIPAATQTSLSQLKLASQLDGEVRLASHPAFDEWYLTSVWNGRGPTRRPAGIVRAATEADVIRTIVFAKERGMEVSVRGSGHNYVGCFLRVDTLMLDISGLKGLDIDSRHKRAIVESGVSSGQLCHALAAKGLAFPTGHVKEVGISGFLLGGGLGINCSQWGGMSVFNVQALDIVTADGHLRHVSETQEPDLFWAARGAGPCSFFVVTRFYLSCYSLPRVITNSLYTLPFTYLHDLLARLEDASPPTNLQVMVSVSPPTSGDTPAVLLNILAFTDSPQEAQALCESFETRLELPLTALAINQPSNFETIYEQFSSMVVSKRFYADNILTDNTQELVSILSRYLSDAPSRGALTTIFWRGVTTYPQAAFSAHGKFFVSTYAQWDDAKDDSVNKYWLKRMYDELQEIARSRYINEYDLETRAGETSKCFAAENWERLQRLRLEYDPDGVFVDVQQLEEHGDQPGANN
>NZ_CP006783.1|WP_002213046.1|2036101_2036431_+|sulfurtransferase-TusE
MLEFEGRIIDTDAQGYLKNSTDWSEALAPVLAEQEGITLTEPHWEVVRFVRAFYQEFNTSPAIRMLVKAMAQKYGEEKGNSRYLYRLFPKGPAKQATKIAGLPKPVKCI
>NZ_CP006783.1|WP_002213049.1|2036482_2036761_-|acylphosphatase
MSKIYIVAYVYGVVQGVGFRYSTQRQAQQLGVTGYAKNCDDGSVEVVASGNPQAVERLMEWIRQGGPRGARVDRLLTEPYPPTPFETFSIRY
>NZ_CP006783.1|WP_002213052.1|2036854_2038045_+|23S-rRNA-(cytosine(1962)-C(5))-methyltransferase-RlmI
MTVRLILAKGREKSLLRRHPWIFSGAVQRLEGDALSGETIDILDSQGKWLARAAYSPESQILARVWTFQQDEVIDCAFFIRRLQQAQNWRDWLAQRDGLNGYRLIAGESDGLPGITIDRFQNFLVLQLLSAGAEYQRETLVSALQHCYPECSIYDRSDVSVRKKEGLPLTQGLICGEMPPALLPISENGMQLFVDIQQGHKTGFYLDQRDSRLAARNYANGRRVLNCFSYTGAFAVAALMGNCQQVISVDTSQSVLDIAKQNIELNQLDLSKTEFVRDDVFQLLRSYRAQGEKFDLIIMDPPKFVENKSQLASACRGYKDINMLAIQLLRPGGILLSFSCSGLMPVDLFQKILADAALDAGHDIQFIEQFRQAADHPVIAAYPEGLYLKGFACRVM
>NZ_CP006783.1|WP_002213054.1|2038105_2038423_+|heat-shock-protein-HspQ
MIASKFGIGQQVRHSLHGYLGVVIDIDPEYSLAPPEPDEVANNKTLRSSPWYHVVIEDDDGQPVHTYLAEAQLTYEDVDAHPEQPSLDELAASIRHQLQAPHLRN
>NZ_CP006783.1|WP_002213056.1|2038531_2038948_-|CoA-binding-protein
MHDKDIADILKKVKTIALVGASDIPSRPSYRVMAYLLQQGYQVTPVNPKLAGELLLGQLVYAELADIPHAIDMVDVFRNSDAAYCIAQDAIAIGAKVLWLQIGVINEQAAILATDAGLQVVMDRCPKIELPRLGLEKG
>NZ_CP006783.1|WP_002213058.1|2039263_2039944_+|DUF2057-family-protein
MKLGLVAGMLAVCFSFSSVAMTLKLTPEIDLLVVDGKNMSGSLLKGADSLELNSGMHQILFKVIKPLPTDPLVLYSSPPLIVVFNAHNTRSVAIKLPVINTLRDGHQFSKNPLYQLIGDNGHPLSVRHDVLRQDHLNNSTTLETVMAAYNVGKYNASVPAFAAIPPSPVSAVPGTTIPVAGVNTPHKTASLQGENVTEQMLQYWFLQANPETQKRFLIWAKKQPIH
>NZ_CP006783.1|WP_002213060.1|2040122_2040587_+|methylglyoxal-synthase
MELTTRTIAARKHIALVSHDHCKKSLLAWVMENRDLLAQHELYATGTTGNLVQKATGIDVHCLLSGPMGGDQEVGALISEKKIDILIFFWDPLNAVPHDPDVKALLRLATVWNIPVATNRSTADFLIGSTLFSSEVTIAIPDYDRYMQQRLDLK
>NZ_CP006783.1|WP_002221095.1|2040647_2042702_-|DNA-helicase-IV
MELKATSFGKHLSQHPYNRVRLLNAGIEVCGDKHQYLIPFNQLVSIQCKRGIVWGELEFELPQQKVVRLHGTEWQETQHFYHYLLGVWQQWSEEMSQVCAEVLHKQVESIKRIEQQDKWFKRSELGQIQVMIREAFSALPMPVERLAAFESCRADYECCLRWLQQGRHSVERCNQQWTARMLEEYQDFFQNVETSPLNASQSRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRNEALPEQILLLAFGRQAADEMNSRIKQRLGVDSIQAKTFHALALHIIQQGSRKTPVISKLESDSQARRALLIQHWQQQCSEKKAQAKGWREWLTDELEWDVADGDFWQDKRLAARLASRLERWVGLMRMYGGSQAEMIEQANDEVRDLFQKRIRLMAPLLKAWKTALKDEGAVDFSGLIHQAVNLLEKGRFVSPWKHVLVDEFQDISPQRAMLLAALRKQNKQTCLFAVGDDWQAIYRFSGAELSLTTAFSEHFGEGAECALDTTYRFNDRIGDIANRFIQQNPYQLKKPLNSLSKGNKKSVMILPDEQLEALLDKLSGFVKDGERILILARYHHLRPEVLQKAATRWPKLTIDFMTIHASKGQQADYVIIVGLHEGNDGFPAAARESVLEDVLLPPPEDFPDAEERRLLYVAITRAKHQVWLLQDTARPSIFVSQLSELGALVQRKP

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Crispr_ID: NZ_CP006783_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006783_5

4235689-4235801

Orphan

Consensus_repeat	Method
CTTCACTCGGCTGCTCAAATGTGCTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006783_5

>merge|NZ_CP006783|5|4235689-4235801|CRISPRCasFinder
CTTCACTCGGCTGCTCAAATGTGCTTTGGACGTCAACAACCCATTCAAAATCAAAAACGTATTAAAAGCCTAAGGATGATGGTCTGGCTTCACTCGCTGCTCAAATGTGCTTT

>NZ_CP006783|5|5|4235689-4235801|CRISPRCasFinder
CTTCACTCGGCTGCTCAAATGTGCTTT	GGACGTCAACAACCCATTCAAAATCAAAAACGTATTAAAAGCCTAAGGATGATGGTCTG
GCTTCACTCGCTGCTCAAATGTGCTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006783.1\|WP_002222054.1\|4227555_4228008_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NZ_CP006783.1\|WP_002209483.1\|4248226_4250035_+\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|226969
NZ_CP006783.1\|WP_002209491.1\|4236220_4238857_-\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|234570
NZ_CP006783.1\|WP_002209253.1\|4228029_4229517_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|236410
NZ_CP006783.1\|WP_002209482.1\|4250110_4251439_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP006783.1\|WP_011906450.1\|4244729_4247222_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	unknown	unknown	gnl\|CDD\|273807
NZ_CP006783.1\|WP_002209255.1\|4232285_4232696_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP006783.1\|WP_002209481.1\|4251503_4252307_+\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|223880
NZ_CP006783.1\|WP_002223919.1\|4239230_4240394_-\|acetylornithine-deacetylase	unknown	unknown	gnl\|CDD\|235346
NZ_CP006783.1\|WP_002210188.1\|4224282_4225116_+\|dihydropteroate-synthase	unknown	unknown	gnl\|CDD\|183230
NZ_CP006783.1\|WP_002209257.1\|4233792_4234062_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP006783.1\|WP_002209484.1\|4247443_4248061_+\|hemophore-HasA	unknown	unknown	gnl\|CDD\|368907
NZ_CP006783.1\|WP_002209488.1\|4241817_4242591_+\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|239782
NZ_CP006783.1\|WP_002223151.1\|4229541_4232220_+\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NZ_CP006783.1\|WP_002210189.1\|4225125_4226466_+\|phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|236787
NZ_CP006783.1\|WP_100067904.1\|4234124_4235479_-\|IS3-like-element-IS1661-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP006783.1\|WP_002209256.1\|4232695_4233670_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235333
NZ_CP006783.1\|WP_002209489.1\|4240644_4241649_+\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|234761
NZ_CP006783.1\|WP_002209487.1\|4242757_4244131_+\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179883
NZ_CP006783.1\|WP_002210190.1\|4226688_4227024_+\|preprotein-translocase-subunit-SecG	unknown	unknown	gnl\|CDD\|235881

Protein	Function_ID	Function_description	E-value
NZ_CP006783.1\|WP_002222054.1\|4227555_4228008_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	9.48893e-78
NZ_CP006783.1\|WP_002209483.1\|4248226_4250035_+\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|226969	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only].	0
NZ_CP006783.1\|WP_002209491.1\|4236220_4238857_-\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|234570	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.	0
NZ_CP006783.1\|WP_002209253.1\|4228029_4229517_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|236410	PRK09202, nusA, transcription elongation factor NusA; Validated.	0
NZ_CP006783.1\|WP_002209482.1\|4250110_4251439_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	3.16318e-105
NZ_CP006783.1\|WP_011906450.1\|4244729_4247222_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	gnl\|CDD\|273807	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein. This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	2.46482e-132
NZ_CP006783.1\|WP_002209255.1\|4232285_4232696_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	7.0498e-51
NZ_CP006783.1\|WP_002209481.1\|4251503_4252307_+\|energy-transducer-TonB	gnl\|CDD\|223880	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane].	1.51188e-39
NZ_CP006783.1\|WP_002223919.1\|4239230_4240394_-\|acetylornithine-deacetylase	gnl\|CDD\|235346	PRK05111, PRK05111, acetylornithine deacetylase; Provisional.	0
NZ_CP006783.1\|WP_002210188.1\|4224282_4225116_+\|dihydropteroate-synthase	gnl\|CDD\|183230	PRK11613, folP, dihydropteroate synthase; Provisional.	0
NZ_CP006783.1\|WP_002209257.1\|4233792_4234062_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	3.55817e-52
NZ_CP006783.1\|WP_002209484.1\|4247443_4248061_+\|hemophore-HasA	gnl\|CDD\|368907	pfam06438, HasA, Heme-binding protein A (HasA). Free iron is limited in vertebrate hosts, thus an alternative to siderophores has been developed by pathogenic bacteria to access host iron bound in protein complexes. HasA is a secreted hemophore that has the ability to obtain iron from hemoglobin. Once bound to HasA, the heme is shuttled to the receptor HasR, which releases the heme into the bacterium.	9.51098e-102
NZ_CP006783.1\|WP_002209488.1\|4241817_4242591_+\|acetylglutamate-kinase	gnl\|CDD\|239782	cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).	2.92616e-136
NZ_CP006783.1\|WP_002223151.1\|4229541_4232220_+\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NZ_CP006783.1\|WP_002210189.1\|4225125_4226466_+\|phosphoglucosamine-mutase	gnl\|CDD\|236787	PRK10887, glmM, phosphoglucosamine mutase; Provisional.	0
NZ_CP006783.1\|WP_100067904.1\|4234124_4235479_-\|IS3-like-element-IS1661-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	9.01643e-48
NZ_CP006783.1\|WP_002209256.1\|4232695_4233670_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235333	PRK05033, truB, tRNA pseudouridine synthase B; Provisional.	0
NZ_CP006783.1\|WP_002209489.1\|4240644_4241649_+\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|234761	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated.	0
NZ_CP006783.1\|WP_002209487.1\|4242757_4244131_+\|argininosuccinate-lyase	gnl\|CDD\|179883	PRK04833, PRK04833, argininosuccinate lyase; Provisional.	0
NZ_CP006783.1\|WP_002210190.1\|4226688_4227024_+\|preprotein-translocase-subunit-SecG	gnl\|CDD\|235881	PRK06870, secG, preprotein translocase subunit SecG; Reviewed.	1.73565e-24

>NZ_CP006783.1|WP_100067904.1|4234124_4235479_-|IS3-like-element-IS1661-family-transposase
MKHPFSTRLAAVQHYLSGKATLRETARQFSVGKSPLTRWIRAFRRQGEAGLEHHLSRTYTPEFRLCVVRYMMANRCSAADASAHFNIPNETIIQNWMKRYREGGKEALNPSKTGPTMPKDKYEHDSKPFSEMTHAELEKELEYLRAENAYPKKAESPERRKGTQGAAEKTRIVQALTAEHRLSCLLCAAKLARSTYYYHASKPDGVIDDYADAVKAIGALSRRHAQRYGYRRMTVALRKEGFTLNHKTVRKLMNQHGLLSLIRRKKYRSYRADGGRASDNLLARNFTSEISGLKWCTDVTEFRVGAQKLYLSVIQDLFNNEIISWHMSERAALILTCKTLEKALKVKGRKEGLMLHSDQGWHYRTPMWRSMLVEAGIRQSMSRKGNCLDNAVMENFFSHLKAEMYHRKKYDSATVLKRDIVEYIHYYNTERISLKTGGMSPAEYRTQVEKQ
>NZ_CP006783.1|WP_002209257.1|4233792_4234062_+|30S-ribosomal-protein-S15
MSLSVEAKAKIVADFGRGTNDTGSSEVQVALLTAQINHLQGHFSEHKKDHHSRRGLLRMVSTRRKLLDYLKRQDVARYASLIERLGLRR
>NZ_CP006783.1|WP_002209256.1|4232695_4233670_+|tRNA-pseudouridine(55)-synthase-TruB
MGRPRRRGRDINGVLLLDKPLGLSSNDVLQKVKRLFSANRAGHTGALDPLATGMLPICLGEATKFSQFLLDSDKRYRVVARLGQRTDTSDAEGALISEREVNLTQAQIDTALESFRGESQQIPSMYSALKHQGKPLYEYARQGIEVEREARSITVYELLFIRWEGNDLELEIHCSKGTYIRTIIDDLGELLGCGAHVSYLRRLQVATYPSERMVTLEQLTAMVEAAQAEGRSPNPELDSLLLPMDSAVLNFPEVNLLPSVAAYVKQGQPVHVSGAPSEGMVRITEGKERNFIGIGTIAEDGRVAPKRLVVESVEVENLPVENKK
>NZ_CP006783.1|WP_002209255.1|4232285_4232696_+|30S-ribosome-binding-factor-RbfA
MAKEFSRSQRVSQEMQKEIALILQREIKDPRVGMATVSGIELSRDLAYAKVFVTFLNVLTDNADPDTVKNGIKALQDASGYIRTLLGKAMRLRIVPELTFAYDNSLIEGMRMSNLVSNVIKNDVERQVNPGSDEEK
>NZ_CP006783.1|WP_002223151.1|4229541_4232220_+|translation-initiation-factor-IF-2
MTDVTVKSLAAEIQTPVDRLVQQFADAGIKKSDVDSVTQQEKEILLAHLNREHGSVPNKLTLQRKTRSTLNIPSTGGKSKSVQIEVRKKRTYVNTPEAEQAKAEEQAQREAEEQAQREAEATAQKIAEEKAKREAEEQAKREAAEKAKRQAAEKEKVTNQQTDEKTKPAQTDKARREAEAAELKRSVEEETRRKVEEDAKRVAEEARKMAAENEGKWPEPVAEQTESADYHVTTSQHARAAEDENDAKVEGDRRSRTRGGKATKQKKGNKLSESKADREEARAVGRKGKRKPSTLQQSFNKPVVAVNRDVVIGETVTVAELANKMAVKGSQVIKAMMKLGAMATINQVIDQETAQLVAEEMGHKVILRRENELEEALMSDRDIGVEAAAEHRAPVVTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAANVPVVVAVNKIDKPEADPDRVKTELSQYGIQPEEWGGESQFINVSAKAGIGIDELLNAILLQAEVLELKAVRTGMANGVVIESFLDKGRGPVATVLVQQGTLNKGDIVLCGFEYGRVRAMRDELGRDITSAGPSIPVEILGLSSVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVSELNIVIKSDVQGSCEAICDSLEKLSTDEVKVRIVGSGVGGITETDATLAAASGAIILGFNVRADASARRVVETEGLDLRYYSVIYSLIDEVKQAMSGMLAPEYKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVIKRNNPIRVLRDNVVIYEGELESLRRFKDDVSEVRNGMECGIGVKNYNDVRTGDVIEVFEIIEIKRTIA
>NZ_CP006783.1|WP_002209253.1|4228029_4229517_+|transcription-termination/antitermination-protein-NusA
MNKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRRWVAVDEVTMPTREITLDAAQFEDPSLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVEQFRQYLGQIVTGIVKKVSRDSIALDLGHNAEAVIGREDMLPRENFRPGDRIRGVLYDVRPEARGAQLFVSRSRSEMLVELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQEESFGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIEGLSDEQAGELIMAARNICWFGDNA
>NZ_CP006783.1|WP_002222054.1|4227555_4228008_+|ribosome-maturation-factor-RimP
MSTLEQKLTEIISAPVEALGYELVGIEFIRGRQSTLRIYIDSDDGITVDACADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPMFTAEHYTRYLGEEVTLVLRMAMQNRRKWQGIIKAVDGEMITVTVDGKDEVFALSNIQKANLVPHF
>NZ_CP006783.1|WP_002210190.1|4226688_4227024_+|preprotein-translocase-subunit-SecG
MYEALLVFFLLISIGLVALIMLQQGKGADMGASFGAGASATLFGSNGSGNFMTRMTAVLATLFFVISLILGNMSSNQGQKSSEWENLGQPLKTEQTATPVAPVKPSSDIPQ
>NZ_CP006783.1|WP_002210189.1|4225125_4226466_+|phosphoglucosamine-mutase
MSNRKYFGTDGIRGKVGESPITPDFVLKLGWAAGKVLARHGSRKIIIGKDTRISGYMLESALEAGLAAAGLSALFTGPMPTPAVAYLTRTFRAEAGIVISASHNPFYDNGIKFFSIDGTKLPDDVEEAIEAEMEKPLTCVESAELGKANRIVDAAGRYIEFCKGTFPSELSLNELKIVVDCANGATYHIAPSVLRELGATVITIGCEPDGMNINEECGATDVRLLQERVLAEGAHVGLAFDGDGDRLMMVDHLGNKVDGDQILYIIAREGLRQGQLKGGAVGTLMSNMGLQLALKDLGIPFVRAKVGDRYVLEAMQEKGWRIGAENSGHVILLDKTTTGDGIVAGLQVLTAMVRNHMSLHDLCSGMKLLPQILVNVRFSGEHNPLKSDEVEEVTRQVEKELGGRGRVLLRKSGTEPLIRVMVEGDAEESLIAEMANRIADAVKAAG
>NZ_CP006783.1|WP_002210188.1|4224282_4225116_+|dihydropteroate-synthase
MHLTARGLTLDLSRPQVMGILNVTPDSFSDGGCHNNLDQALQHAQRMLSAGATLIDIGGESTRPGAAEVSEQEELDRVVPVVEALAQRFDVWLSVDTSKAAVITESAHAGAHLINDIRSLQEPGALEAAAKTGLPVCLMHMQGQPKNMQHSPYYDDLMTDINRFFQHHIERCVAAGIAKNKLLLDPGFGFGKNLAHNYQLLAHLSELHHFELPLLVGMSRKSMVGQLLNVPPQQRVIGSVACAVIAAMQGAQIIRVHDVKETVEAMCIVEATRSAKG
>NZ_CP006783.1|WP_002209491.1|4236220_4238857_-|phosphoenolpyruvate-carboxylase
MNEQYSAMRSNVSMLGTLLGDTIKEALGEHILDRVETIRKLSKSSRAGNEASRQELLTTLQNLSNDELLPVARAFSQFLNLTNTAEQYHSISPHGEAASNPEALAQLFTRLKDKKLSDQDMRSAVDDLSIELVLTAHPTEITRRTLIHKLVEVNTCLSQLDHNDLADYERNKIMRRLRQLVAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWEGVPAFLREFNEQLENSLDYRLPVEAVPIRFTSWMGGDRDGNPNVTAEITRHVLLLSRWKATDLFLRDIQVLVSELSMSECTPELRELAGGEEVLEPYRQLMKNVRTQLTNTQAYLEARLKGERVLPPHDLLVSNDQLWEPLYACYQSLKACGMEIIANGQLLDTLRRVRCFGVPLVRIDVRQESTRHTDAIAELTRYLGLGDYESWSESDKQAFLVRELNSKRPLVPLKWEPSAETQEVLETCRVIAEAPQGSIAAYVISMAKVPSDVLAVHLLLKEAGCPFTLPVAPLFETLDDLNNADDVMTQLLGIDWYRGLIQGKQMVMIGYSDSAKDAGVMAASWAQYRAQDALIKTCEKAGITLTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKFGLPEVTISSLALYAGAILEANLLPPPEPKKEWIEVMDLLSDASCDMYRSYVRENPEFVRYFRAATPELELGKLPLGSRPAKRRPDGGVESLRAIPWIFAWTQNRLMLPAWLGAGAGLQRAIDAGKQDVLATMCRDWPFFSTRIGMLEMVFAKADLWLAEYYDQRLVDKSLWPLGQQLRDQLAADIKVVLAIANDDHLMADLPWIAESIALRNVYTDPLNVLQAELLHRSRQQEHPDACVEQALMVTIAGVAAGMRNTG
>NZ_CP006783.1|WP_002223919.1|4239230_4240394_-|acetylornithine-deacetylase
MKLPPFIELYRALIATPSISAADSALDQSNEALINLLAGWFADLGFRVEIQPVPDTRHKFNLLASIGENENGEGHGGLLLAGHTDTVPYDEGRWTRDPFTLTEHDHKLYGLGTADMKGFFAFILDAVRDIDASKLTKPLYILATADEETTMAGARYFAANTQLRPDFAIIGEPTSLQPVRAHKGHISNAIRITGQSGHSSDPARGVNAIDLMHESITQLMALRTTLQERYHNPAFTIPYPTMNFGHINGGDAANRICACCELHMDIRPLPGLTLSDLNELMTEALEPVSQRWPGRLSIDELHPPIPGYECPTDHHMVGVIEKLLGERTAVVNYCTEAPFIQQVCPTLVLGPGSINQAHQPDEFIDMAFIEPTRELIGQLVDHFCQQK
>NZ_CP006783.1|WP_002209489.1|4240644_4241649_+|N-acetyl-gamma-glutamyl-phosphate-reductase
MLNTLIVGASGYAGAELTAYLNRHPHMNITGLAVSAQSADAGKLLSDLHPQLKGILDLPLQPLVDVAQAAKGIDVVFLATAHEVSHDLAPQFLAAGCVVFDLSGAFRVRDAAFYSQYYGFEHQHPDWLDKAVYGLAEWQSEDIKQAQLIAVPGCYPTASQLALKPLVDGQLLNDAQWPVINAVSGVSGAGRKASMGNSFCEVSLQPYGLFTHRHQPEIVTHLGTPVIFTPHLGNFARGILATITCRLKAGVTAQNIADAYHHAYQNKPLVRLYQQGVPALKAVVGLPFCDIGFSVQGEHLIIVATEDNLLKGAAAQAVQCMNIRFGFPETQSLL
>NZ_CP006783.1|WP_002209488.1|4241817_4242591_+|acetylglutamate-kinase
MNPLVIKLGGVLLDSEEALERLFTALVTYREKHERPLVIMHGGGCLVDELMKRLALPVVKKNGLRVTPADQIDIITGALAGTANKTLLAWAVKHQINAVGLCLADGNTVTVTLLDAELGHVGKAQPGSAALVQTLLAAGYMPIISSIGITVEGQLMNVNADQAATALAATLGADLILLSDVSGILDGKGQRIAEMTAQKAEQLIAQGIITDGMVVKVNAALDAARSLGRPVDIASWRHSEQLPALFNGVPIGTRISV
>NZ_CP006783.1|WP_002209487.1|4242757_4244131_+|argininosuccinate-lyase
MALWGGRFSQAADQRFKQFNDSLRFDYRLAEQDIIGSVAWSKALVTVGVLNADEQQQLEQALSVLLEEVQANPHAILASDAEDIHSWVETKLIDKVGDLGKKLHTGRSRNDQVATDLKLWCKFQITELQTAVQQLQQALVMTAEANQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLSRDESRLQDTLKRLDVSPLGCGALAGTAYAIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSDASIGMVHLSRFAEDLIFFNSGEAAFVDLSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMTMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCKEAAEQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKALEALALSDLQQFSSVIGDDVYPILALQSCLDKRVAKGGVSPQQVASAIAEAKARLF
>NZ_CP006783.1|WP_011906450.1|4244729_4247222_+|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor
MDNIIRDKKTIISVNKITTCILFALVTQGYSGQLAANTAETPTNNNDMALDKLNVEGKGNAHDSDWIYDEPRSVSEITREQLDNRPARHAADILEQTPGVYSSVSQQDPGLSINIRGIQDYGRVNMNIDGMRQNFMKSGHGQRNGSMYIDPEILSNVVIERGIFNGIGGAGAIGGIATFNTINASDFLAPEKELGGHIRAMTGDNGTRFIGSGALALGNPNGDILLAVSERNLKDYWPGNKGVLAGLRLYSPTRNVGDDLKNTKTLFTGYKMRSQLAKVGWNFEAGQRLEFSYLQTQIASPNASMLSEVLALSPSGKEITKIGWRNTSFTNVENRNIALDYRLNPEHISWLDATAKIYYVDTNDETDNANSLFKEYFWTQTRLKTRGLQLQNTNTFTPSDAHQIRLKYGLEWFSDKSEGYSTRKLIERTTPPGKRAITSTFAQLNYEYDDWLRLEGGLRYDQFRLKGNTWLHTRSFLQPYTFENPCDRRIHEQSEKPGSRCSSRRPATMRWDVDRSEQQLSPTLAMGVKPGLEWLEFFGSYGKSWRPPAMTEVLATGTAHGYSWVLPNPFVAAERARTWEAGFNIQQSNLFIEDDHFAAKVAYFDTRIANYINLELGKAKPKFGGDSFTDVAYVNNLLKTRFRGLEYQLSYDAGTFYTNINYTRMIGVNNVCSPYAWLGGLQSVKYKYVGKVEQIYAVENEVANNYVTCMNANVLFGSSAYLPGDRGSLTLGSRIFDRRLDFGTVIRYNKGYQDRSAQDENGNPLTAYVADWPKYIVYDLYASYKVTNNLILRSSIENITNRAYLVNYGDTLSFAPSRGRTIQGGFEYKF
>NZ_CP006783.1|WP_002209484.1|4247443_4248061_+|hemophore-HasA
MSTTIQYNSNYADYSISSYLREWANNFGDIDQAPAETKDRGSFSGSSTLFSGTQYAIGSSHSNPEGMIAEGDLKYSFMPQHTFHGQIDTLQFGKDLATNAGGPSAGKHLEKIDITFNELDLSGEFDSGKSMTENHQGDMHKSVRGLMKGNPDPMLEVMKAKGINVDTAFKDLSIASQYPDSGYMSDAPMVDTVGVVDCHDMLLAA
>NZ_CP006783.1|WP_002209483.1|4248226_4250035_+|type-I-secretion-system-permease/ATPase
MESCKTPGASSVPPTILSVLAGNKKILWGIGLFTAVINLLMLAPAIYMLQVYDRVLASANTMTLLMLTVLVLGVFVFIGLLEWVRSAVVIRLGTQIDMQLNQPVFNAAFAANLKGHNTPAAQALNDLTVLRQFATGNALFAFFDAPWFPLYLLVIFLLHPWLGMLAAAGAGILVVLAWLNQWICKKPLHDASIITSHATQQANANLRNADVIEAMGMLKALRERWLMQHANFLYQQNLASDKSSRVTAVAKSSRQALQSMMLGLGALLVIYNEITAGVMIAGSILIGRVLGPIDQLIAVWKQWSHARLAYQRLSQLLAQHPSSPTGMVLPAPQGKLNVTQLMACKPGTHIPVLHSINFELQPGDVLGILGPSGSGKSTLAKLLVASQPTFSGTVRLDSADLSRWDKTQLGEFIGYLPQNIQLFRGTVAENIARFGAIDTAKVVAAAQLADVHDLILHLPQGYDTPLGDDGEGLSGGQRQRIALARAMYGIPRLIVLDEPNASLDKEGEQALLASIIQLKQQGCTIVMITHKPELLSGSDYLLFLKNGQMDLFDRTQAVLQNIQGKDKPAVQPEAKILNSRSGWSNGVSYGIGPARTTSSPKP
>NZ_CP006783.1|WP_002209482.1|4250110_4251439_+|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MLPESVCYSVANANRQPPLQINSGRYLNIGGGLVVIGFIGFLLWAGLAPLDKGVAVTGLLVVAENRKVIQPLQGGRIQQLHVTEGDEIVSGQLLVTLDDTAIRNQRDNLQHQYLSALAQEARLTAEQNDLDVITFPQALLEHATQPAVERNIILQQQLLHHRRQAHLSEIARLSTQLTRHQARLDGLQAMRSNHQRQSNLFQQQLDSVQLLAKDGHIAKNKLLEMESQSTSLQARVEQSTSDIAEAHKLIDETEQHVLQRREQYQSENSEQLAKAQQNTQELVQRLNIAEYELSHTRIFAPVSGSVIALAQHTVGGVVSSGQALMEIVPSGQPLFVEAQLPVELIDKVAVGLPVDLNFSAFNQSNTPRLQGSVWRIGADRIQPPPTSPPYYPLTVAIDLDPTELAIRPGMAVDVFIRTGERSLLSYLFKPFTDRLHLALAEE
>NZ_CP006783.1|WP_002209481.1|4251503_4252307_+|energy-transducer-TonB
MNRLQQSSDKLIFWLVGALLACGIHIYALWWLSTASIPAIPTSYPAAIMMELSAEPEFMQNLPQNSVVGITQNIIEPAVEQRVNQPDDIVDLPTLPEQPEGQREITRKEPIKVKRPAENRATSRKPVNKETQESDSKQSSPAAAASAMLSGTSQQVAAAVNSDSSHRQQAQVSWKSRLQGHLMGFKRYPSSARKQQQQGTAMIRFVVDKNGYVSSVQLSHSSGTSALDREALAIIKRAQPLPKPPAELLSQGQITLSLPVDFNLKRK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NZ_CP006783_1	1.1\|10914\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	10914-10945	32	NZ_CP006783.1	1466129-1466160	1.0
NZ_CP006783_1	1.2\|10974\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	10974-11005	32	NZ_CP006783.1	1465262-1465293	1.0
NZ_CP006783_1	1.6\|11216\|32\|NZ_CP006783\|CRISPRCasFinder,CRT	11216-11247	32	NZ_CP006783.1	1465720-1465751	1.0
NZ_CP006783_2	2.1\|921955\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	921955-921986	32	NZ_CP006783.1	1474462-1474493	1.0
NZ_CP006783_3	3.4\|1903049\|33\|NZ_CP006783\|CRISPRCasFinder,CRT,PILER-CR	1903049-1903081	33	NZ_CP006783.1	1467163-1467195	1.0
NZ_CP006783_3	3.5\|1903110\|32\|NZ_CP006783\|CRISPRCasFinder,CRT,PILER-CR	1903110-1903141	32	NZ_CP006783.1	1466754-1466785	1.0

1. spacer 1.1|10914|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to position: 1466129-1466160, mismatch: 0, identity: 1.0

cacggcggtggtgaaaacggctgtcactcata	CRISPR spacer
cacggcggtggtgaaaacggctgtcactcata	Protospacer
********************************

2. spacer 1.2|10974|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to position: 1465262-1465293, mismatch: 0, identity: 1.0

gaatcgttgcaggatagttttcaccgcgtccg	CRISPR spacer
gaatcgttgcaggatagttttcaccgcgtccg	Protospacer
********************************

3. spacer 1.6|11216|32|NZ_CP006783|CRISPRCasFinder,CRT matches to position: 1465720-1465751, mismatch: 0, identity: 1.0

agactgatgcaagatggcggtatgcgtacaga	CRISPR spacer
agactgatgcaagatggcggtatgcgtacaga	Protospacer
********************************

4. spacer 2.1|921955|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to position: 1474462-1474493, mismatch: 0, identity: 1.0

caagtcctcggcatggtcgccctcattggtga	CRISPR spacer
caagtcctcggcatggtcgccctcattggtga	Protospacer
********************************

5. spacer 3.4|1903049|33|NZ_CP006783|CRISPRCasFinder,CRT,PILER-CR matches to position: 1467163-1467195, mismatch: 0, identity: 1.0

ttggcaatcatgtttggctgcgcttggttaaac	CRISPR spacer
ttggcaatcatgtttggctgcgcttggttaaac	Protospacer
*********************************

6. spacer 3.5|1903110|32|NZ_CP006783|CRISPRCasFinder,CRT,PILER-CR matches to position: 1466754-1466785, mismatch: 0, identity: 1.0

tgtcaggctgggactctgatttttcaattcgt	CRISPR spacer
tgtcaggctgggactctgatttttcaattcgt	Protospacer
********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP006783_1	1.6\|11216\|32\|NZ_CP006783\|CRISPRCasFinder,CRT	11216-11247	32	MT374852	Yersinia phage vB_YpM_3, complete genome	12-43	0	1.0
NZ_CP006783_2	2.4\|922137\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922137-922168	32	MK820641	Gordonia phage EnalisNailo, complete genome	34088-34119	6	0.812
NZ_CP006783_2	2.4\|922137\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922137-922168	32	MK878898	Gordonia phage Zameen, complete genome	34513-34544	6	0.812
NZ_CP006783_2	2.4\|922137\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922137-922168	32	MK919483	Gordonia phage Suscepit, complete genome	34514-34545	6	0.812
NZ_CP006783_2	2.4\|922137\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922137-922168	32	MK284520	Gordonia phage Lilas, complete genome	35799-35830	6	0.812
NZ_CP006783_2	2.4\|922137\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922137-922168	32	MK016492	Gordonia phage Bialota, complete genome	35265-35296	6	0.812
NZ_CP006783_2	2.4\|922137\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922137-922168	32	MK820642	Gordonia phage Polly, complete genome	33956-33987	6	0.812
NZ_CP006783_2	2.4\|922137\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922137-922168	32	NC_041883	Gordonia phage Attis, complete genome	31646-31677	6	0.812
NZ_CP006783_2	2.4\|922137\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922137-922168	32	MK814755	Gordonia phage Antonio, complete genome	34513-34544	6	0.812
NZ_CP006783_2	2.4\|922137\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922137-922168	32	MK875796	Gordonia phage Tayonia, complete genome	34513-34544	6	0.812
NZ_CP006783_2	2.4\|922137\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922137-922168	32	MK801734	Gordonia phage LordFarquaad, complete genome	31627-31658	6	0.812
NZ_CP006783_2	2.4\|922137\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922137-922168	32	MK433274	Gordonia phage Bradissa, complete genome	34554-34585	6	0.812
NZ_CP006783_2	2.4\|922137\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922137-922168	32	KU963257	Gordonia phage Kita, complete genome	34522-34553	6	0.812
NZ_CP006783_2	2.4\|922137\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922137-922168	32	NC_031251	Gordonia phage SoilAssassin, complete genome	31645-31676	6	0.812
NZ_CP006783_2	2.4\|922137\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922137-922168	32	NC_031097	Gordonia phage Zirinka, complete genome	35253-35284	6	0.812
NZ_CP006783_2	2.4\|922137\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922137-922168	32	NZ_CP005086	Sphingobium sp. TKS plasmid pTK2, complete sequence	138555-138586	6	0.812
NZ_CP006783_1	1.1\|10914\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	10914-10945	32	MN509793	Pectobacterium phage MA13, partial genome	58-89	7	0.781
NZ_CP006783_2	2.1\|921955\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	921955-921986	32	NC_015561	Hoyosella subflava DQS3-9A1 plasmid pAS9A-2, complete sequence	99067-99098	7	0.781
NZ_CP006783_2	2.2\|922015\|34\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922015-922048	34	MK416013	Klebsiella phage ST16-OXA48phi5.1, complete genome	41421-41454	7	0.794
NZ_CP006783_2	2.2\|922015\|34\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922015-922048	34	MK448237	Klebsiella phage ST974-OXA48phi18.2, complete genome	36685-36718	7	0.794
NZ_CP006783_2	2.4\|922137\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922137-922168	32	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	440819-440850	7	0.781
NZ_CP006783_2	2.4\|922137\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922137-922168	32	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	282870-282901	7	0.781
NZ_CP006783_2	2.4\|922137\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922137-922168	32	KJ433975	Mycobacterium phage 40BC, complete genome	23231-23262	7	0.781
NZ_CP006783_2	2.4\|922137\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922137-922168	32	KJ433973	Mycobacterium phage 39HC, complete genome	23231-23262	7	0.781
NZ_CP006783_2	2.4\|922137\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922137-922168	32	NC_024145	Mycobacterium phage Hosp, complete genome	21427-21458	7	0.781
NZ_CP006783_2	2.5\|922197\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922197-922228	32	JF974294	Aeromonas phage pIS4-A genomic sequence	21965-21996	7	0.781
NZ_CP006783_2	2.5\|922197\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922197-922228	32	NC_021534	Vibrio phage pYD38-A genomic sequence	3299-3330	7	0.781
NZ_CP006783_2	2.7\|922317\|32\|NZ_CP006783\|CRISPRCasFinder,CRT	922317-922348	32	CP049262	Cronobacter sakazakii strain CS-09 plasmid pCsaCS09b, complete sequence	69636-69667	7	0.781
NZ_CP006783_3	3.2\|1902929\|32\|NZ_CP006783\|CRISPRCasFinder,CRT,PILER-CR	1902929-1902960	32	MH616963	CrAssphage sp. isolate ctbg_1, complete genome	86942-86973	7	0.781
NZ_CP006783_2	2.5\|922197\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922197-922228	32	NZ_CP029117	Escherichia coli strain AR435 plasmid unnamed4	112580-112611	8	0.75
NZ_CP006783_3	3.2\|1902929\|32\|NZ_CP006783\|CRISPRCasFinder,CRT,PILER-CR	1902929-1902960	32	NZ_CP010358	Acinetobacter johnsonii XBB1 plasmid pXBB1-8, complete sequence	46720-46751	8	0.75
NZ_CP006783_3	3.2\|1902929\|32\|NZ_CP006783\|CRISPRCasFinder,CRT,PILER-CR	1902929-1902960	32	NC_019694	Oscillatoria acuminata PCC 6304 plasmid pOSCIL6304.02, complete sequence	20911-20942	8	0.75
NZ_CP006783_1	1.4\|11094\|33\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	11094-11126	33	NZ_CP040366	Bacillus flexus isolate 1-2-1 plasmid punnamed3, complete sequence	923-955	9	0.727
NZ_CP006783_2	2.5\|922197\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922197-922228	32	MF679145	Escherichia coli plasmid pBJ114-96, complete sequence	37586-37617	9	0.719
NZ_CP006783_2	2.5\|922197\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922197-922228	32	NZ_KP453775	Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence	60831-60862	9	0.719
NZ_CP006783_2	2.5\|922197\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922197-922228	32	NZ_CP021340	Escherichia coli strain 95NR1 plasmid p95NR1A, complete sequence	67671-67702	9	0.719
NZ_CP006783_2	2.5\|922197\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922197-922228	32	NZ_CP021336	Escherichia coli strain 95JB1 plasmid p95JB1A, complete sequence	67672-67703	9	0.719
NZ_CP006783_2	2.5\|922197\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922197-922228	32	NZ_CP040920	Escherichia coli strain FC853_EC plasmid p853EC1, complete sequence	33435-33466	9	0.719
NZ_CP006783_2	2.5\|922197\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922197-922228	32	NZ_CP024832	Escherichia coli strain CREC-532 plasmid pCREC-532_2, complete sequence	33830-33861	9	0.719
NZ_CP006783_2	2.5\|922197\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922197-922228	32	NZ_CP024817	Escherichia coli strain CREC-629 plasmid pCREC-629_2, complete sequence	62769-62800	9	0.719
NZ_CP006783_2	2.5\|922197\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922197-922228	32	NZ_CP029117	Escherichia coli strain AR435 plasmid unnamed4	15616-15647	9	0.719
NZ_CP006783_2	2.5\|922197\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922197-922228	32	NZ_CP023961	Escherichia coli strain FDAARGOS_448 plasmid unnamed2, complete sequence	16858-16889	9	0.719
NZ_CP006783_2	2.5\|922197\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922197-922228	32	AP023222	Escherichia coli M505 plasmid pM505-b DNA, complete genome	93734-93765	9	0.719
NZ_CP006783_2	2.5\|922197\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922197-922228	32	AP023233	Escherichia coli YJ4 plasmid pYJ4-b DNA, complete genome	47570-47601	9	0.719
NZ_CP006783_2	2.5\|922197\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922197-922228	32	NZ_CP019075	Escherichia coli strain CRE1493 plasmid p1493-4, complete sequence	16520-16551	9	0.719
NZ_CP006783_2	2.5\|922197\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922197-922228	32	NZ_CP015837	Escherichia coli strain MS6198 plasmid pMS6198C, complete sequence	3287-3318	9	0.719
NZ_CP006783_2	2.5\|922197\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922197-922228	32	NZ_CP011063	Escherichia coli str. Sanji plasmid pSJ_98, complete sequence	37637-37668	9	0.719
NZ_CP006783_2	2.6\|922257\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922257-922288	32	NZ_CP031943	Nostoc sphaeroides strain Kutzing En plasmid p2, complete sequence	4006-4037	9	0.719
NZ_CP006783_3	3.2\|1902929\|32\|NZ_CP006783\|CRISPRCasFinder,CRT,PILER-CR	1902929-1902960	32	MT774386	CrAssphage cr110_1, complete genome	42858-42889	9	0.719
NZ_CP006783_3	3.2\|1902929\|32\|NZ_CP006783\|CRISPRCasFinder,CRT,PILER-CR	1902929-1902960	32	NZ_CP028934	Campylobacter jejuni strain FORC_083 plasmid pFORC_083_2, complete sequence	25849-25880	9	0.719
NZ_CP006783_2	2.4\|922137\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	922137-922168	32	NZ_JX627581	Methylobacterium oryzae CBMB20 plasmid pMOC2, complete sequence	30496-30527	10	0.688

1. spacer 1.6|11216|32|NZ_CP006783|CRISPRCasFinder,CRT matches to MT374852 (Yersinia phage vB_YpM_3, complete genome) position: , mismatch: 0, identity: 1.0

agactgatgcaagatggcggtatgcgtacaga	CRISPR spacer
agactgatgcaagatggcggtatgcgtacaga	Protospacer
********************************

2. spacer 2.4|922137|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to MK820641 (Gordonia phage EnalisNailo, complete genome) position: , mismatch: 6, identity: 0.812

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
tcgcgagcgcgctcaggatcacggcg-gacgac	Protospacer
******.********** ****** . *.***

3. spacer 2.4|922137|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to MK878898 (Gordonia phage Zameen, complete genome) position: , mismatch: 6, identity: 0.812

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
tcgcgagcgcgctcaggatcacggcg-gacgac	Protospacer
******.********** ****** . *.***

4. spacer 2.4|922137|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to MK919483 (Gordonia phage Suscepit, complete genome) position: , mismatch: 6, identity: 0.812

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
tcgcgagcgcgctcaggatcacggcg-gacgac	Protospacer
******.********** ****** . *.***

5. spacer 2.4|922137|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to MK284520 (Gordonia phage Lilas, complete genome) position: , mismatch: 6, identity: 0.812

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
tcgcgagcgcgctcaggatcacggcg-gacgac	Protospacer
******.********** ****** . *.***

6. spacer 2.4|922137|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to MK016492 (Gordonia phage Bialota, complete genome) position: , mismatch: 6, identity: 0.812

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
tcgcgagcgcgctcaggatcacggcg-gacgac	Protospacer
******.********** ****** . *.***

7. spacer 2.4|922137|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to MK820642 (Gordonia phage Polly, complete genome) position: , mismatch: 6, identity: 0.812

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
tcgcgagcgcgctcaggatcacggcg-gacgac	Protospacer
******.********** ****** . *.***

8. spacer 2.4|922137|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to NC_041883 (Gordonia phage Attis, complete genome) position: , mismatch: 6, identity: 0.812

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
tcgcgagcgcgctcaggatcacggcg-gacgac	Protospacer
******.********** ****** . *.***

9. spacer 2.4|922137|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to MK814755 (Gordonia phage Antonio, complete genome) position: , mismatch: 6, identity: 0.812

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
tcgcgagcgcgctcaggatcacggcg-gacgac	Protospacer
******.********** ****** . *.***

10. spacer 2.4|922137|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to MK875796 (Gordonia phage Tayonia, complete genome) position: , mismatch: 6, identity: 0.812

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
tcgcgagcgcgctcaggatcacggcg-gacgac	Protospacer
******.********** ****** . *.***

11. spacer 2.4|922137|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to MK801734 (Gordonia phage LordFarquaad, complete genome) position: , mismatch: 6, identity: 0.812

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
tcgcgagcgcgctcaggatcacggcg-gacgac	Protospacer
******.********** ****** . *.***

12. spacer 2.4|922137|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to MK433274 (Gordonia phage Bradissa, complete genome) position: , mismatch: 6, identity: 0.812

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
tcgcgagcgcgctcaggatcacggcg-gacgac	Protospacer
******.********** ****** . *.***

13. spacer 2.4|922137|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to KU963257 (Gordonia phage Kita, complete genome) position: , mismatch: 6, identity: 0.812

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
tcgcgagcgcgctcaggatcacggcg-gacgac	Protospacer
******.********** ****** . *.***

14. spacer 2.4|922137|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to NC_031251 (Gordonia phage SoilAssassin, complete genome) position: , mismatch: 6, identity: 0.812

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
tcgcgagcgcgctcaggatcacggcg-gacgac	Protospacer
******.********** ****** . *.***

15. spacer 2.4|922137|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to NC_031097 (Gordonia phage Zirinka, complete genome) position: , mismatch: 6, identity: 0.812

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
tcgcgagcgcgctcaggatcacggcg-gacgac	Protospacer
******.********** ****** . *.***

16. spacer 2.4|922137|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP005086 (Sphingobium sp. TKS plasmid pTK2, complete sequence) position: , mismatch: 6, identity: 0.812

--tcgcgaacgcgctcaggttcacggaatggcga	CRISPR spacer
ggtcacga--tcgctcaggttcagggaaaggcga	Protospacer
  **.***   ************ **** *****

17. spacer 1.1|10914|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to MN509793 (Pectobacterium phage MA13, partial genome) position: , mismatch: 7, identity: 0.781

cacggcggtggtgaaaacggctgtcact-cata	CRISPR spacer
cacggcggtgatgaaaccggctgggcctgcgt-	Protospacer
**********.***** ******   ** *.*

18. spacer 2.1|921955|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to NC_015561 (Hoyosella subflava DQS3-9A1 plasmid pAS9A-2, complete sequence) position: , mismatch: 7, identity: 0.781

caagtcctcggcatggtcgccctcattggtga	CRISPR spacer
ctcgtcttcggcatgttcgccctcatggccga	Protospacer
*  ***.******** ********** * .**

19. spacer 2.2|922015|34|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to MK416013 (Klebsiella phage ST16-OXA48phi5.1, complete genome) position: , mismatch: 7, identity: 0.794

cgttccagcgtgtatttgagtcggtcacggataa	CRISPR spacer
ttatccagcgtgtacttgagtcggtcgcggatcc	Protospacer
.  ***********.***********.*****

20. spacer 2.2|922015|34|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to MK448237 (Klebsiella phage ST974-OXA48phi18.2, complete genome) position: , mismatch: 7, identity: 0.794

cgttccagcgtgtatttgagtcggtcacggataa	CRISPR spacer
ttatccagcgtgtacttgagtcggtcgcggatcc	Protospacer
.  ***********.***********.*****

21. spacer 2.4|922137|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

tcgcgaacgcgctcaggttcacggaatggcga----	CRISPR spacer
tcgcgaacgcgcccaggttcccg----agcgaggtg	Protospacer
************.******* **    .****

22. spacer 2.4|922137|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 7, identity: 0.781

tcgcgaacgcgctcaggttcacggaatggcga----	CRISPR spacer
tcgcgaacgcgcccaggttcccg----agcgaggtg	Protospacer
************.******* **    .****

23. spacer 2.4|922137|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to KJ433975 (Mycobacterium phage 40BC, complete genome) position: , mismatch: 7, identity: 0.781

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
gcgcgaacgcgctcgggtacacgg-gcggcggg	Protospacer
 *************.*** ***** ..****.

24. spacer 2.4|922137|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to KJ433973 (Mycobacterium phage 39HC, complete genome) position: , mismatch: 7, identity: 0.781

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
gcgcgaacgcgctcgggtacacgg-gcggcggg	Protospacer
 *************.*** ***** ..****.

25. spacer 2.4|922137|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to NC_024145 (Mycobacterium phage Hosp, complete genome) position: , mismatch: 7, identity: 0.781

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
gcgcgaacgcgctcgggtacacgg-gcggcggg	Protospacer
 *************.*** ***** ..****.

26. spacer 2.5|922197|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to JF974294 (Aeromonas phage pIS4-A genomic sequence) position: , mismatch: 7, identity: 0.781

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
atcaggcataaagcaaatgccattcaggtaat	Protospacer
*** *   .**** *************.****

27. spacer 2.5|922197|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to NC_021534 (Vibrio phage pYD38-A genomic sequence) position: , mismatch: 7, identity: 0.781

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
atcaggcataaagcaaatgccattcaggtaat	Protospacer
*** *   .**** *************.****

28. spacer 2.7|922317|32|NZ_CP006783|CRISPRCasFinder,CRT matches to CP049262 (Cronobacter sakazakii strain CS-09 plasmid pCsaCS09b, complete sequence) position: , mismatch: 7, identity: 0.781

atcatgaaagacattgttcgccagtcccctga	CRISPR spacer
atcatgaaagagattgttcgccagcgcgacgt	Protospacer
*********** ************. *  .*

29. spacer 3.2|1902929|32|NZ_CP006783|CRISPRCasFinder,CRT,PILER-CR matches to MH616963 (CrAssphage sp. isolate ctbg_1, complete genome) position: , mismatch: 7, identity: 0.781

ttaagttctttttgtcagcatctttaataaat	CRISPR spacer
taataatctttttatcagcatcttttataatt	Protospacer
* * . *******.*********** **** *

30. spacer 2.5|922197|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029117 (Escherichia coli strain AR435 plasmid unnamed4) position: , mismatch: 8, identity: 0.75

atctgc-gccaaagaaaatgccattcagataat	CRISPR spacer
-taaacagttaaagaaactgccaatcagataat	Protospacer
 *  .* *..******* ***** *********

31. spacer 3.2|1902929|32|NZ_CP006783|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010358 (Acinetobacter johnsonii XBB1 plasmid pXBB1-8, complete sequence) position: , mismatch: 8, identity: 0.75

ttaagttctttttgtcagcatctttaataaat	CRISPR spacer
gtgccatattttcgtcagcatcattaataaat	Protospacer
 *.   * ****.********* *********

32. spacer 3.2|1902929|32|NZ_CP006783|CRISPRCasFinder,CRT,PILER-CR matches to NC_019694 (Oscillatoria acuminata PCC 6304 plasmid pOSCIL6304.02, complete sequence) position: , mismatch: 8, identity: 0.75

ttaagttctttttgtcagcatctttaataaat	CRISPR spacer
ttgatgctcttttggcagcttctttaataaat	Protospacer
**.*  ...***** **** ************

33. spacer 1.4|11094|33|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040366 (Bacillus flexus isolate 1-2-1 plasmid punnamed3, complete sequence) position: , mismatch: 9, identity: 0.727

ccgaaatcatcagatgtaattaagatttttgct	CRISPR spacer
aatggattatcagatgtaattaagtttttttcc	Protospacer
   ..**.**************** ***** *.

34. spacer 2.5|922197|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to MF679145 (Escherichia coli plasmid pBJ114-96, complete sequence) position: , mismatch: 9, identity: 0.719

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
aaaacagttaaagaaactgccaatcagataat	Protospacer
*     *..******* ***** *********

35. spacer 2.5|922197|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 9, identity: 0.719

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
aaaacagttaaagaaactgccaatcagataat	Protospacer
*     *..******* ***** *********

36. spacer 2.5|922197|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021340 (Escherichia coli strain 95NR1 plasmid p95NR1A, complete sequence) position: , mismatch: 9, identity: 0.719

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
aaaacagttaaagaaactgccaatcagataat	Protospacer
*     *..******* ***** *********

37. spacer 2.5|922197|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021336 (Escherichia coli strain 95JB1 plasmid p95JB1A, complete sequence) position: , mismatch: 9, identity: 0.719

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
aaaacagttaaagaaactgccaatcagataat	Protospacer
*     *..******* ***** *********

38. spacer 2.5|922197|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040920 (Escherichia coli strain FC853_EC plasmid p853EC1, complete sequence) position: , mismatch: 9, identity: 0.719

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
aaaacagttaaagaaactgccaatcagataat	Protospacer
*     *..******* ***** *********

39. spacer 2.5|922197|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024832 (Escherichia coli strain CREC-532 plasmid pCREC-532_2, complete sequence) position: , mismatch: 9, identity: 0.719

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
aaaacagttaaagaaactgccaatcagataat	Protospacer
*     *..******* ***** *********

40. spacer 2.5|922197|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024817 (Escherichia coli strain CREC-629 plasmid pCREC-629_2, complete sequence) position: , mismatch: 9, identity: 0.719

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
aaaacagttaaagaaactgccaatcagataat	Protospacer
*     *..******* ***** *********

41. spacer 2.5|922197|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029117 (Escherichia coli strain AR435 plasmid unnamed4) position: , mismatch: 9, identity: 0.719

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
aaaacagttaaagaaactgccaatcagataat	Protospacer
*     *..******* ***** *********

42. spacer 2.5|922197|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023961 (Escherichia coli strain FDAARGOS_448 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
aaaacagttaaagaaactgccaatcagataat	Protospacer
*     *..******* ***** *********

43. spacer 2.5|922197|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to AP023222 (Escherichia coli M505 plasmid pM505-b DNA, complete genome) position: , mismatch: 9, identity: 0.719

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
aaaacagttaaagaaactgccaatcagataat	Protospacer
*     *..******* ***** *********

44. spacer 2.5|922197|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to AP023233 (Escherichia coli YJ4 plasmid pYJ4-b DNA, complete genome) position: , mismatch: 9, identity: 0.719

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
aaaacagttaaagaaactgccaatcagataat	Protospacer
*     *..******* ***** *********

45. spacer 2.5|922197|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019075 (Escherichia coli strain CRE1493 plasmid p1493-4, complete sequence) position: , mismatch: 9, identity: 0.719

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
aaaacagttaaagaaactgccaatcagataat	Protospacer
*     *..******* ***** *********

46. spacer 2.5|922197|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015837 (Escherichia coli strain MS6198 plasmid pMS6198C, complete sequence) position: , mismatch: 9, identity: 0.719

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
aaaacagttaaagaaactgccaatcagataat	Protospacer
*     *..******* ***** *********

47. spacer 2.5|922197|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011063 (Escherichia coli str. Sanji plasmid pSJ_98, complete sequence) position: , mismatch: 9, identity: 0.719

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
aaaacagttaaagaaactgccaatcagataat	Protospacer
*     *..******* ***** *********

48. spacer 2.6|922257|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031943 (Nostoc sphaeroides strain Kutzing En plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.719

aactactagaagcttgcccatcttaccttttc	CRISPR spacer
taccactaaaagcttgcccatctttctcataa	Protospacer
 **.****.*************** *.. *

49. spacer 3.2|1902929|32|NZ_CP006783|CRISPRCasFinder,CRT,PILER-CR matches to MT774386 (CrAssphage cr110_1, complete genome) position: , mismatch: 9, identity: 0.719

ttaagttctttttgtcagcatctttaataaat	CRISPR spacer
caagtttctttttatcagcatcttcaatagca	Protospacer
. *. ********.**********.****.

50. spacer 3.2|1902929|32|NZ_CP006783|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028934 (Campylobacter jejuni strain FORC_083 plasmid pFORC_083_2, complete sequence) position: , mismatch: 9, identity: 0.719

ttaagttctttttgtcagcatctttaataaat	CRISPR spacer
taactttctttttgtcagcgtctgtaatgtgc	Protospacer
* *  **************.*** ****. ..

51. spacer 2.4|922137|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to NZ_JX627581 (Methylobacterium oryzae CBMB20 plasmid pMOC2, complete sequence) position: , mismatch: 10, identity: 0.688

tcgcgaacgcgctcaggttcacggaatggcga	CRISPR spacer
acgcgaatgcgctgaggttcacggctcgttag	Protospacer
 ******.***** **********  .* ...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

81117 : 90259

Escherichia_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002215390.1\|81117_81885_-	esterase	G1DB77	Mycobacterium_phage	3.4e-06	36.0
WP_002212204.1\|82595_82847_+	hypothetical protein	NA	NA	NA	NA
WP_002215393.1\|83009_83195_-	hypothetical protein	NA	NA	NA	NA
WP_001297096.1\|84087_84867_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_011901829.1\|84866_85889_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.2e-200	99.7
WP_002215951.1\|86493_86811_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	2.0e-13	48.1
WP_002210705.1\|86816_87131_+	putative addiction module antidote protein	NA	NA	NA	NA
WP_002210707.1\|87479_88568_-	AAA family ATPase	A0A2H4JFA4	uncultured_Caudovirales_phage	1.4e-114	60.4
WP_011906363.1\|88564_89524_-	toprim domain-containing protein	A0A1W6JPG0	Morganella_phage	2.8e-50	41.0
WP_002215949.1\|89516_90059_-	ash family protein	NA	NA	NA	NA
WP_002210709.1\|90058_90259_-	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	1.6e-08	51.7

DBSCAN-SWA_2

160786 : 217380

Enterobacteria_phage(16.67%)

holin,protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011906358.1\|160786_161245_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_011906357.1\|161473_163177_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	1.0e-55	31.4
WP_002218281.1\|163199_164672_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_002218278.1\|164729_165326_-	transcriptional regulator BetI	NA	NA	NA	NA
WP_002228035.1\|165690_167739_+\|holin	choline transporter	A0A2I7QNT1	Vibrio_phage	1.4e-19	28.5
WP_002214199.1\|167970_168864_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002214197.1\|168901_169750_-	DMT family transporter	NA	NA	NA	NA
WP_002214195.1\|170095_170959_+	xanthosine phosphorylase	Q5YBA4	Grouper_iridovirus	2.3e-51	40.7
WP_002213759.1\|171886_172345_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002210776.1\|172759_173689_+	DUF4097 domain-containing protein	NA	NA	NA	NA
WP_002228612.1\|173988_174927_+\|tRNA	tRNA dihydrouridine(16) synthase DusC	NA	NA	NA	NA
WP_002210778.1\|175000_175180_-	hypothetical protein	NA	NA	NA	NA
WP_002210780.1\|175518_176454_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_002210781.1\|176574_178287_-	D-lactate dehydrogenase	NA	NA	NA	NA
WP_002210782.1\|178496_179036_+	class IV adenylate cyclase	NA	NA	NA	NA
WP_011906355.1\|179061_179403_-	HNH nuclease family protein	NA	NA	NA	NA
WP_002210785.1\|179715_180819_+	suppressor of fused domain protein	NA	NA	NA	NA
WP_002210786.1\|181003_181252_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_002210787.1\|181459_182296_+	phosphonate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.1e-17	30.1
WP_011906354.1\|182332_183262_+	phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002210789.1\|183364_184225_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_002210790.1\|184227_185109_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_002210791.1\|185354_185828_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.7e-37	50.7
WP_002210792.1\|186255_187524_+	urea ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002210793.1\|187647_189249_+	urea ABC transporter permease subunit UrtB	NA	NA	NA	NA
WP_002210794.1\|189248_190325_+	urea ABC transporter permease subunit UrtC	NA	NA	NA	NA
WP_032465620.1\|190387_191158_+	urea ABC transporter ATP-binding protein UrtD	A0A285PWH2	Cedratvirus	3.9e-10	28.2
WP_002223523.1\|191251_191950_+	urea ABC transporter ATP-binding subunit UrtE	A0A2H4PQG7	Staphylococcus_phage	6.4e-12	25.6
WP_002210797.1\|192064_192922_+	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_002210798.1\|192945_194361_+	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_002210799.1\|194578_195433_-	3-mercaptopyruvate sulfurtransferase	NA	NA	NA	NA
WP_011191984.1\|196168_197101_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002210801.1\|197361_198516_+	ABC transporter permease	NA	NA	NA	NA
WP_002210802.1\|198512_199451_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.6e-20	29.7
WP_002353933.1\|199585_200284_+	ABC transporter permease	NA	NA	NA	NA
WP_002210804.1\|200779_202114_+	arginine/agmatine antiporter	NA	NA	NA	NA
WP_042659403.1\|203497_204706_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.2e-50	50.3
WP_002210806.1\|205930_206134_-	hypothetical protein	NA	NA	NA	NA
WP_002210807.1\|206258_207149_-	drug/metabolite exporter YedA	NA	NA	NA	NA
WP_002210809.1\|207560_208676_-	porin OmpF2	Q1MVN1	Enterobacteria_phage	2.1e-110	54.5
WP_002210810.1\|208945_211126_+	ATP-dependent DNA helicase DinG	A0A127AW80	Bacillus_phage	1.1e-44	26.3
WP_002228030.1\|211193_212636_-	catalase	A0A2K9L0T1	Tupanvirus	4.9e-99	38.8
WP_002210812.1\|212993_213536_+	membrane protein	NA	NA	NA	NA
WP_002221775.1\|213792_215001_-	tyrosine transporter TyrP	NA	NA	NA	NA
WP_002210814.1\|215619_216813_+	nicotinamide mononucleotide deamidase-related protein YfaY	NA	NA	NA	NA
WP_002210815.1\|216870_217380_-\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA

DBSCAN-SWA_3

240473 : 272047

Escherichia_phage(17.65%)

coat,tail,transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011906348.1\|240473_242261_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.0e-10	63.5
WP_002208867.1\|242757_243693_-	omptin family outer membrane beta-barrel protein YcoA	NA	NA	NA	NA
WP_002208866.1\|243864_244107_-	DinI family protein	K7PKR6	Enterobacteria_phage	6.9e-22	65.0
WP_002208864.1\|244312_245035_-	LexA family transcriptional regulator	F1C599	Cronobacter_phage	2.2e-63	51.9
WP_002215470.1\|245308_245788_+	antitermination protein Q	S5M7R9	Escherichia_phage	2.3e-37	61.0
WP_002208862.1\|245998_247303_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.7e-90	46.0
WP_116463120.1\|247335_248031_+	aldolase	A0A077SK32	Escherichia_phage	5.9e-58	55.4
WP_002208861.1\|248033_248846_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_002208860.1\|248821_249616_+	hydroxypyruvate isomerase family protein	NA	NA	NA	NA
WP_002208859.1\|250212_250503_+	hypothetical protein	H6WRZ3	Salmonella_phage	7.7e-12	46.3
WP_002208858.1\|250548_251166_+	ATP-binding protein	NA	NA	NA	NA
WP_002208857.1\|251170_251365_+	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	3.5e-08	60.4
WP_002208856.1\|251361_252870_+\|tail	tail protein	B5TK67	Pseudomonas_phage	2.4e-104	44.2
WP_002208855.1\|252891_253260_+\|tail	phage tail protein	NA	NA	NA	NA
WP_002208854.1\|253261_253561_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_002208853.1\|253681_255175_+\|coat	coat protein	NA	NA	NA	NA
WP_002208852.1\|255441_256848_+	hypothetical protein	Q8SBG8	Shigella_phage	2.1e-17	33.7
WP_002208850.1\|256844_257900_+\|tail	tail protein	M1PVV2	Vibrio_phage	1.3e-37	27.2
WP_002208848.1\|258509_258965_+	hypothetical protein	A0A0C4UR04	Shigella_phage	4.3e-17	43.8
WP_002208847.1\|258968_260105_+\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	4.5e-31	30.5
WP_002215458.1\|260101_260362_+	DUF2313 domain-containing protein	NA	NA	NA	NA
WP_002208846.1\|260358_260706_+	DUF2313 domain-containing protein	A0A2P9JZK7	Alteromonadaceae_phage	6.4e-21	41.3
WP_002208845.1\|260802_261582_+\|tail	tail fiber protein	Q9MCR6	Enterobacteria_phage	7.1e-52	52.4
WP_002208843.1\|261879_262620_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_002208842.1\|262910_264347_+	6-phospho-beta-glucosidase	NA	NA	NA	NA
WP_002208841.1\|264472_264835_-	hypothetical protein	NA	NA	NA	NA
WP_002208840.1\|265534_266023_-	hypothetical protein	NA	NA	NA	NA
WP_002208839.1\|266035_267184_-	HNH endonuclease	NA	NA	NA	NA
WP_002230704.1\|267540_267924_-	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	7.8e-36	66.7
WP_002208837.1\|268154_269951_-	DUF3413 domain-containing protein	NA	NA	NA	NA
WP_002208836.1\|269978_270206_-	YejL family protein	NA	NA	NA	NA
WP_002208835.1\|270383_271388_+	nucleoid-associated protein YejK	A0A1V0E8C0	Vibrio_phage	3.1e-84	47.7
WP_002213775.1\|271588_272047_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

670420 : 740745

Escherichia_phage(42.86%)

tRNA,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213759.1\|670420_670879_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002208491.1\|671021_671531_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA
WP_002208490.1\|671579_673307_-	phosphoenolpyruvate-protein phosphotransferase PtsI	A0A1V0SGR7	Hokovirus	3.0e-18	33.3
WP_002208488.1\|673355_673613_-	phosphocarrier protein Hpr	NA	NA	NA	NA
WP_002222180.1\|674111_675080_-	cysteine synthase A	A0A1X9I5F1	Streptococcus_phage	4.8e-74	51.8
WP_002231042.1\|675236_675971_-	sulfate transporter CysZ	NA	NA	NA	NA
WP_002227089.1\|676219_677206_+	cell division protein ZipA	NA	NA	NA	NA
WP_002213368.1\|677296_679309_+	NAD-dependent DNA ligase LigA	A0A0K2QQN8	Ralstonia_phage	1.7e-142	42.2
WP_002213369.1\|679328_679544_+	DUF3820 family protein	NA	NA	NA	NA
WP_002213372.1\|679644_679992_-	hypothetical protein	NA	NA	NA	NA
WP_002213374.1\|680123_680729_-	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_002213775.1\|680995_681454_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002222185.1\|681941_683357_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_002211621.1\|686212_687442_+	divalent metal cation transporter	NA	NA	NA	NA
WP_002354622.1\|687534_687849_-	DUF2502 domain-containing protein	NA	NA	NA	NA
WP_016674232.1\|688118_689108_-	glyceraldehyde 3-phosphate reductase	NA	NA	NA	NA
WP_002211617.1\|689243_690122_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002211616.1\|690224_690701_+	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA
WP_002211615.1\|690881_691853_+	glucokinase	NA	NA	NA	NA
WP_002211614.1\|691930_693178_-	DUF1479 domain-containing protein	NA	NA	NA	NA
WP_011906314.1\|693443_694679_+	alanine transaminase	NA	NA	NA	NA
WP_002211611.1\|694904_695429_+	cytochrome b	A0A0U2QLA7	Escherichia_phage	9.3e-24	47.1
WP_002211610.1\|695523_695955_-	hypothetical protein	Q7Y3V7	Yersinia_phage	2.4e-25	48.2
WP_002215847.1\|696544_697216_+	lipoprotein	NA	NA	NA	NA
WP_002215846.1\|697242_697599_+	DUF4810 domain-containing protein	NA	NA	NA	NA
WP_002211607.1\|697595_698252_+	DUF799 domain-containing protein	NA	NA	NA	NA
WP_002211606.1\|698497_699067_-	4Fe-4S binding protein	NA	NA	NA	NA
WP_002228419.1\|699063_699660_-	molecular chaperone	A0A077SLS7	Escherichia_phage	9.2e-44	49.2
WP_002211604.1\|700017_700794_-	dimethyl sulfoxide reductase anchor subunit	A0A077SK59	Escherichia_phage	3.9e-42	41.4
WP_002211603.1\|700795_701413_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	1.1e-87	68.3
WP_002211602.1\|701424_703851_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	1.1e-255	54.4
WP_002211601.1\|704681_705530_+	DUF4225 domain-containing protein	NA	NA	NA	NA
WP_002354621.1\|705759_706239_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_002211599.1\|706705_707230_+	DUF2127 domain-containing protein	NA	NA	NA	NA
WP_002211598.1\|707302_708352_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-21	32.4
WP_002215840.1\|708348_709935_-	iron ABC transporter permease	NA	NA	NA	NA
WP_002211596.1\|709990_711010_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002211594.1\|711338_712433_+	lytic murein transglycosylase B	NA	NA	NA	NA
WP_002211590.1\|713694_714297_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_011906313.1\|714654_715137_-	DcrB-related protein	NA	NA	NA	NA
WP_002211588.1\|715133_716816_-	OmpA family protein	NA	NA	NA	NA
WP_016583104.1\|716816_717482_-	hypothetical protein	NA	NA	NA	NA
WP_002211586.1\|717478_718816_-	glycosyl transferase	A0A292GJ55	Xanthomonas_phage	2.0e-70	32.8
WP_002215319.1\|718855_719887_-	fimbrial protein	NA	NA	NA	NA
WP_002211584.1\|719893_721075_-	ImpA family type VI secretion system protein	NA	NA	NA	NA
WP_002211582.1\|722193_724074_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_002215317.1\|724856_727532_+	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	1.0e-81	32.3
WP_002211580.1\|727732_728278_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_002211579.1\|728434_729196_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_002231031.1\|729323_730874_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_002209743.1\|730895_732104_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002211577.1\|732128_733319_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_016674143.1\|733303_733912_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_002211575.1\|734016_734541_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_002211574.1\|734564_736067_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_002211573.1\|736392_736878_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_002211572.1\|737151_737691_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_002211571.1\|737694_739044_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_011901829.1\|739722_740745_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.2e-200	99.7

DBSCAN-SWA_5

997717 : 1073749

Salmonella_phage(14.29%)

tRNA,coat,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002210913.1\|997717_998833_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_002210912.1\|999019_999466_-	NUDIX hydrolase	NA	NA	NA	NA
WP_002218214.1\|999458_1000085_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_002210910.1\|1000215_1001469_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.8e-20	90.7
WP_011906293.1\|1001614_1002658_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_002210908.1\|1002933_1003194_-	hypothetical protein	NA	NA	NA	NA
WP_002210907.1\|1003313_1004894_-	PAS domain-containing protein	A0A1B0V854	Salmonella_phage	2.5e-35	50.7
WP_002210906.1\|1005813_1006671_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_002227977.1\|1006830_1007214_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002210903.1\|1007745_1009071_+	AppA family phytase/histidine-type acid phosphatase	NA	NA	NA	NA
WP_002210902.1\|1009372_1009576_-	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	9.8e-06	44.6
WP_002210901.1\|1009878_1010778_-	hypothetical protein	NA	NA	NA	NA
WP_002210900.1\|1010869_1011319_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_002214045.1\|1011809_1012343_-	membrane protein	NA	NA	NA	NA
WP_002210897.1\|1012625_1013636_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA
WP_016674113.1\|1014042_1017225_-	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	62.2
WP_002210893.1\|1017765_1017978_+	transcription antiterminator/RNA stability regulator CspE	A0A1W6JNX5	Morganella_phage	2.0e-25	80.0
WP_071525649.1\|1018069_1018384_+	protein DsrB	NA	NA	NA	NA
WP_002209743.1\|1021091_1022300_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002210891.1\|1022760_1023459_+	MgtC family protein	G3MA03	Bacillus_virus	2.1e-15	40.0
WP_011906291.1\|1023859_1026559_+	magnesium-translocating P-type ATPase	M1HM40	Paramecium_bursaria_Chlorella_virus	6.5e-44	25.6
WP_002210889.1\|1028101_1028683_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA
WP_011906290.1\|1028887_1029775_+	flagellar motor stator protein MotA	NA	NA	NA	NA
WP_011171846.1\|1029771_1031073_+	flagellar motor protein MotB	NA	NA	NA	NA
WP_011906289.1\|1031089_1033255_+	chemotaxis protein CheA	NA	NA	NA	NA
WP_002210885.1\|1033417_1033915_+	chemotaxis protein CheW	NA	NA	NA	NA
WP_002210884.1\|1034206_1035442_-	MFS transporter	NA	NA	NA	NA
WP_002210883.1\|1035454_1035832_-	RidA family protein	NA	NA	NA	NA
WP_002210882.1\|1035828_1036815_-	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_002210881.1\|1037004_1037670_+	transcriptional regulator	NA	NA	NA	NA
WP_002224033.1\|1038144_1041951_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_002210878.1\|1042478_1045355_+	DUF2339 domain-containing protein	NA	NA	NA	NA
WP_002214064.1\|1045423_1046125_+	hypothetical protein	NA	NA	NA	NA
WP_002210876.1\|1046365_1048039_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.5e-11	34.7
WP_002220817.1\|1048222_1049833_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	2.3e-12	32.4
WP_002214065.1\|1050005_1050878_+	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_002210873.1\|1052026_1052416_+	chemotaxis protein CheY	A0A2K9L4R0	Tupanvirus	1.3e-06	32.3
WP_002210872.1\|1052425_1053070_+	protein phosphatase CheZ	NA	NA	NA	NA
WP_002210870.1\|1053640_1054405_+	N-acetylmuramoyl-L-alanine amidase	A0A076YN96	Rhizobium_phage	1.9e-09	27.2
WP_002215938.1\|1054761_1056972_+	hypothetical protein	NA	NA	NA	NA
WP_002215939.1\|1056958_1057393_+	hypothetical protein	NA	NA	NA	NA
WP_002210869.1\|1057492_1058446_+	hypothetical protein	NA	NA	NA	NA
WP_002210868.1\|1059064_1060294_-	alanine racemase	NA	NA	NA	NA
WP_002210867.1\|1060695_1060890_-	hypothetical protein	NA	NA	NA	NA
WP_002210865.1\|1061440_1061689_+	hypothetical protein	NA	NA	NA	NA
WP_002210864.1\|1062081_1063338_+	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_002210862.1\|1063492_1063726_+	hypothetical protein	NA	NA	NA	NA
WP_001297096.1\|1064296_1065076_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_011901829.1\|1065075_1066098_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.2e-200	99.7
WP_002215943.1\|1066504_1066894_+	ASCH domain-containing protein	NA	NA	NA	NA
WP_002210859.1\|1067003_1067243_-	YebV family protein	NA	NA	NA	NA
WP_011906287.1\|1067450_1068440_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_002210857.1\|1068645_1071093_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_002210856.1\|1071297_1072050_-	molecular chaperone	NA	NA	NA	NA
WP_002216611.1\|1072080_1072638_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_002216613.1\|1072658_1073189_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_002210852.1\|1073194_1073749_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_6

1397290 : 1492311

Cronobacter_phage(12.24%)

tRNA,integrase,transposase,lysis,terminase,tail

attL 1441924:1441954|attR 1481735:1481765

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002209743.1\|1397290_1398499_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002210664.1\|1399015_1400362_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.9e-81	38.3
WP_002210665.1\|1400668_1401685_-	two-component system response regulator RssB	NA	NA	NA	NA
WP_002210666.1\|1403018_1403483_+	YchJ family protein	NA	NA	NA	NA
WP_002230891.1\|1403566_1404415_+	formyltetrahydrofolate deformylase	M4QRX9	Synechococcus_phage	7.0e-13	37.3
WP_002209743.1\|1405051_1406260_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002211665.1\|1406478_1407339_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002211667.1\|1408148_1408955_+	exodeoxyribonuclease III	NA	NA	NA	NA
WP_002211668.1\|1409052_1409439_+	pyrimidine (deoxy)nucleoside triphosphate diphosphatase	NA	NA	NA	NA
WP_002211669.1\|1409451_1409742_-	DUF1496 domain-containing protein	NA	NA	NA	NA
WP_002211670.1\|1409738_1411664_-	DNA topoisomerase III	A0A1X9I6W8	Streptococcus_phage	4.2e-37	30.4
WP_002211673.1\|1412895_1413447_-	NAD(P)H nitroreductase	NA	NA	NA	NA
WP_011192431.1\|1413609_1415460_+	signal peptide peptidase SppA	NA	NA	NA	NA
WP_002211675.1\|1415576_1416593_+	asparaginase	NA	NA	NA	NA
WP_002211676.1\|1416607_1417255_+	bifunctional nicotinamidase/pyrazinamidase	A0A2K9L6K4	Tupanvirus	1.8e-21	33.0
WP_002217933.1\|1417388_1417661_-	YeaC family protein	NA	NA	NA	NA
WP_002211677.1\|1417731_1418145_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_011906206.1\|1418492_1419488_+	glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_002211679.1\|1419801_1420677_+	D-hexose-6-phosphate mutarotase	NA	NA	NA	NA
WP_002430110.1\|1420749_1421499_-	MipA/OmpV family protein	NA	NA	NA	NA
WP_011906207.1\|1421942_1423877_+	protein kinase YeaG	NA	NA	NA	NA
WP_002216501.1\|1424026_1425301_+	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	1.5e-11	37.1
WP_002211683.1\|1425408_1426527_+	DMT family transporter	NA	NA	NA	NA
WP_002211684.1\|1426561_1427467_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002211685.1\|1427664_1428534_+	pirin family protein	NA	NA	NA	NA
WP_002216508.1\|1428798_1430001_+	multidrug effflux MFS transporter	S4TR35	Salmonella_phage	7.6e-29	29.1
WP_011906208.1\|1430016_1431321_-	D-amino acid dehydrogenase	NA	NA	NA	NA
WP_002211687.1\|1431786_1433322_+	SpoVR family protein	NA	NA	NA	NA
WP_002211688.1\|1433539_1434259_-	fatty acid metabolism transcriptional regulator FadR	NA	NA	NA	NA
WP_002211689.1\|1434502_1436077_+	sodium/proton antiporter NhaB	NA	NA	NA	NA
WP_002227934.1\|1436312_1436843_+	disulfide bond formation protein DsbB	NA	NA	NA	NA
WP_002214494.1\|1437259_1437616_-	hypothetical protein	NA	NA	NA	NA
WP_002211692.1\|1438707_1439448_+	hypothetical protein	NA	NA	NA	NA
WP_002211693.1\|1439464_1440664_+	cysteine desulfurase	A0A1X7QGF3	Faustovirus	2.4e-38	29.6
WP_002214492.1\|1440667_1441840_+	MFS transporter	NA	NA	NA	NA
1441924:1441954	attL	NA	NA	NA	NA
WP_097608205.1\|1442250_1442619_-\|tail	phage tail protein	B6SCW7	Bacteriophage	5.0e-08	42.0
WP_002211696.1\|1442680_1443598_-	hypothetical protein	NA	NA	NA	NA
WP_002211697.1\|1443614_1444613_-	hypothetical protein	NA	NA	NA	NA
WP_002211698.1\|1444612_1447816_-	host specificity protein J	F1C571	Cronobacter_phage	0.0e+00	60.5
WP_002359202.1\|1447991_1448213_+	hypothetical protein	NA	NA	NA	NA
WP_002211700.1\|1448387_1449008_-\|tail	tail assembly protein	K7PGY0	Enterobacteria_phage	3.2e-55	57.0
WP_002211701.1\|1449063_1449279_-	hypothetical protein	NA	NA	NA	NA
WP_002214482.1\|1449421_1449973_-	zinc ribbon domain-containing protein	S4TR42	Salmonella_phage	9.5e-27	58.0
WP_002211704.1\|1450071_1451079_-	hypothetical protein	A0A2H4J0P1	uncultured_Caudovirales_phage	4.1e-36	33.0
WP_002211705.1\|1451152_1451320_-	hypothetical protein	G9L6D7	Escherichia_phage	5.2e-13	61.8
WP_002211706.1\|1451443_1451875_+	Arc family DNA-binding protein	G9L6D6	Escherichia_phage	2.5e-30	58.4
WP_002211708.1\|1452857_1453568_-	peptidase P60	K7P6F5	Enterobacteria_phage	1.3e-108	76.8
WP_002211709.1\|1453570_1454323_-\|tail	phage minor tail protein L	A0A1W6JNX9	Morganella_phage	9.4e-102	67.7
WP_002213775.1\|1454442_1454901_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002213759.1\|1455152_1455611_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002211710.1\|1455916_1456258_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	1.7e-21	50.0
WP_011906212.1\|1456260_1459776_-\|tail	phage tail tape measure protein	K7PMB9	Enterobacterial_phage	5.2e-118	33.2
WP_071525538.1\|1459776_1460037_-	hypothetical protein	A0A0S2SY90	Pseudomonas_phage	3.7e-13	50.0
WP_002211712.1\|1460084_1460396_-	hypothetical protein	I6PDG2	Cronobacter_phage	1.4e-30	58.3
WP_002211713.1\|1460408_1461329_-\|tail	phage tail protein	I6PBN6	Cronobacter_phage	4.4e-61	49.1
WP_002211714.1\|1461394_1461802_-	DUF4128 domain-containing protein	NA	NA	NA	NA
WP_002211715.1\|1461798_1462383_-	hypothetical protein	G8C7Q1	Escherichia_phage	3.6e-48	52.1
WP_002211716.1\|1462384_1462735_-	hypothetical protein	I6PD77	Cronobacter_phage	6.9e-31	56.0
WP_002211717.1\|1462736_1462991_-	hypothetical protein	J9Q7U0	Salmonella_phage	2.2e-18	53.1
WP_002211718.1\|1462987_1463470_-	hypothetical protein	G8C7P9	Escherichia_phage	6.4e-27	46.1
WP_002211719.1\|1463517_1464723_-	hypothetical protein	A0A1B0VMF8	Pseudomonas_phage	1.8e-142	79.2
WP_002211720.1\|1464736_1465510_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	2.8e-69	62.3
WP_002211721.1\|1465631_1466744_-	hypothetical protein	I6PD76	Cronobacter_phage	6.0e-121	58.2
WP_002228446.1\|1466744_1467386_-	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	3.8e-59	54.1
WP_002228445.1\|1467404_1468133_-	hypothetical protein	A0A1B0VMH0	Pseudomonas_phage	4.6e-61	51.4
WP_011906214.1\|1468132_1469623_-\|terminase	terminase	A0A1W6JNY3	Morganella_phage	7.8e-225	76.5
WP_002211724.1\|1469632_1470082_-	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	1.0e-47	72.9
WP_002211725.1\|1470112_1470748_-	hypothetical protein	I6S676	Salmonella_phage	7.2e-87	71.4
WP_002211727.1\|1471204_1471918_-	hypothetical protein	Q5MBW0	Stx1-converting_phage	7.6e-69	60.2
WP_002211729.1\|1472463_1472922_-\|lysis	lysis protein	A0A2H4JHL8	uncultured_Caudovirales_phage	4.9e-21	45.3
WP_002211730.1\|1472906_1473419_-	lysozyme	I6PBN2	Cronobacter_phage	9.7e-50	61.6
WP_002430108.1\|1473449_1473647_-	hypothetical protein	B6SD15	Bacteriophage	4.9e-18	64.4
WP_002215644.1\|1473892_1474168_+	hypothetical protein	NA	NA	NA	NA
WP_002211731.1\|1474164_1474374_-	hypothetical protein	NA	NA	NA	NA
WP_002211732.1\|1474797_1475361_-	hypothetical protein	B6SD63	Bacteriophage	9.4e-30	58.0
WP_002215638.1\|1475409_1475628_-	hypothetical protein	NA	NA	NA	NA
WP_002215636.1\|1475631_1476021_-	antitermination protein	A0A1W6JNX1	Morganella_phage	1.4e-45	68.8
WP_002211735.1\|1476021_1476627_-	recombination protein NinG	A0A1P8DTE0	Proteus_phage	2.8e-56	56.9
WP_002211736.1\|1476700_1477147_-	recombination protein NinB	A0A2H4J8D9	uncultured_Caudovirales_phage	3.9e-47	62.5
WP_071525537.1\|1477122_1477872_+	DNA adenine methylase	Q5QF26	Pseudomonas_virus	1.5e-54	48.5
WP_002215632.1\|1478171_1478432_+	excisionase family protein	Q859D3	Escherichia_coli_phage	1.7e-10	42.9
WP_001297096.1\|1478599_1479379_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_011901829.1\|1479378_1480401_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.2e-200	99.7
WP_002211738.1\|1480470_1481709_+\|integrase	site-specific integrase	Q20GI2	Phage_258-320	2.3e-121	53.3
WP_002211739.1\|1481735_1482182_-	YcgN family cysteine cluster protein	NA	NA	NA	NA
1481735:1481765	attR	NA	NA	NA	NA
WP_002211740.1\|1482284_1482941_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_002215627.1\|1483011_1484097_-	lytic murein transglycosylase	NA	NA	NA	NA
WP_002211743.1\|1484237_1484510_-	hypothetical protein	NA	NA	NA	NA
WP_002220631.1\|1485230_1485917_+	septum site-determining protein MinC	NA	NA	NA	NA
WP_002211179.1\|1485941_1486754_+	septum site-determining protein MinD	NA	NA	NA	NA
WP_002211180.1\|1486757_1487027_+	cell division topological specificity factor MinE	NA	NA	NA	NA
WP_002211181.1\|1487263_1488385_-	ribonuclease D	NA	NA	NA	NA
WP_002220632.1\|1488544_1490233_-	long-chain-fatty-acid--CoA ligase FadD	A0A2H4PQM9	Staphylococcus_phage	3.0e-31	28.9
WP_087768167.1\|1490767_1490875_+	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_002211184.1\|1491612_1492311_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA

DBSCAN-SWA_7

1945648 : 2017025

Indivirus(11.11%)

tRNA,plate,lysis,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002211870.1\|1945648_1947676_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	8.0e-55	27.1
WP_002213775.1\|1947839_1948298_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002228565.1\|1948515_1949178_-	hypothetical protein	NA	NA	NA	NA
WP_002211975.1\|1949875_1950952_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002211974.1\|1950969_1952223_+	hypothetical protein	NA	NA	NA	NA
WP_002211973.1\|1952555_1953737_+	MFS transporter	NA	NA	NA	NA
WP_002211971.1\|1953978_1954386_+	CidA/LrgA family protein	NA	NA	NA	NA
WP_002211970.1\|1954382_1955078_+\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA
WP_002211969.1\|1955413_1956298_+	cytidine deaminase	NA	NA	NA	NA
WP_002211968.1\|1956653_1958351_+	NAD-dependent malic enzyme	NA	NA	NA	NA
WP_002211966.1\|1958631_1959369_+	outer membrane permeability protein SanA	NA	NA	NA	NA
WP_001297096.1\|1961110_1961890_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_011906260.1\|1962804_1964319_-	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	F2Y2R6	Organic_Lake_phycodnavirus	3.4e-10	29.2
WP_002211963.1\|1964548_1965541_-	galactose/glucose ABC transporter substrate-binding protein MglB	NA	NA	NA	NA
WP_002211961.1\|1966288_1967455_-	DUF418 family protein	NA	NA	NA	NA
WP_002211960.1\|1967509_1968172_-	GTP cyclohydrolase I FolE	R9TJA5	Vibrio_phage	5.8e-55	53.5
WP_002211959.1\|1968355_1969507_-	YbfB/YjiJ family MFS transporter	NA	NA	NA	NA
WP_002211958.1\|1969642_1970512_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002224699.1\|1970786_1971926_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	6.1e-36	30.2
WP_002211956.1\|1971946_1972789_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_002227980.1\|1973045_1973258_+	peptide antibiotic darobactin C	NA	NA	NA	NA
WP_042659393.1\|1973341_1975702_+	darobactin export ABC transporter permease subunit	NA	NA	NA	NA
WP_002211952.1\|1975703_1976966_+	darobactin export ABC transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_002211951.1\|1976967_1977636_+	darobactin export ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.4e-35	40.0
WP_002211950.1\|1977645_1978956_+	darobactin maturation radical SAM/SPASM protein DarE	NA	NA	NA	NA
WP_002211949.1\|1979490_1980765_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA
WP_002211948.1\|1980766_1981537_+	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA
WP_002211947.1\|1981601_1982255_-	hypothetical protein	NA	NA	NA	NA
WP_002227996.1\|1982482_1984078_-	ABC-F family ATPase	A0A2K9L0W2	Tupanvirus	6.1e-58	28.5
WP_002211945.1\|1984760_1985384_+	hypothetical protein	NA	NA	NA	NA
WP_002211944.1\|1985595_1986963_-	membrane protein	NA	NA	NA	NA
WP_002211943.1\|1986987_1987440_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_002214552.1\|1987439_1988021_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_016674055.1\|1987995_1989081_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_002211940.1\|1989044_1990808_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_002211939.1\|1991028_1991484_-	hypothetical protein	NA	NA	NA	NA
WP_002211938.1\|1991498_1992557_-	PAAR domain protein	NA	NA	NA	NA
WP_002211937.1\|1992574_1994176_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_002211936.1\|1994219_1997642_-	type VI secretion system membrane subunit	NA	NA	NA	NA
WP_016674153.1\|1997638_1998871_-	hypothetical protein	NA	NA	NA	NA
WP_002214564.1\|2001035_2001506_-	hypothetical protein	NA	NA	NA	NA
WP_002211932.1\|2001678_2003862_-	M23 family metallopeptidase	NA	NA	NA	NA
WP_002211931.1\|2003877_2004138_-	DUF2345 domain-containing protein	NA	NA	NA	NA
WP_002211930.1\|2004291_2005065_-	hypothetical protein	NA	NA	NA	NA
WP_013060322.1\|2005061_2007362_-	M23 family metallopeptidase	NA	NA	NA	NA
WP_002211928.1\|2007377_2009726_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	4.5e-17	32.1
WP_042659392.1\|2009728_2012371_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	2.8e-92	31.6
WP_002210014.1\|2012758_2013250_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_002214568.1\|2013253_2014990_-	OmpA family protein	NA	NA	NA	NA
WP_002210015.1\|2014989_2015676_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_002213011.1\|2015672_2017025_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_8

2366511 : 2447495

Staphylococcus_phage(22.22%)

tRNA,plate,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213775.1\|2366511_2366970_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002209956.1\|2367358_2368600_-	phosphoglycerate dehydrogenase	A0A1V0SBV6	Catovirus	2.1e-98	46.5
WP_002209957.1\|2368906_2369563_-	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA
WP_002209958.1\|2369904_2370813_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA
WP_002209959.1\|2370823_2371603_-	oxidative stress defense protein	NA	NA	NA	NA
WP_002209960.1\|2371792_2372410_-	arginine exporter ArgO	NA	NA	NA	NA
WP_002209961.1\|2372672_2373542_-	small-conductance mechanosensitive channel MscS	NA	NA	NA	NA
WP_002209962.1\|2373979_2375059_-	class II fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_002209963.1\|2375178_2376342_-	phosphoglycerate kinase	NA	NA	NA	NA
WP_002209964.1\|2376444_2377461_-	erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA
WP_002213759.1\|2377801_2378260_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002209965.1\|2378567_2380562_-	transketolase	NA	NA	NA	NA
WP_002209967.1\|2381052_2381805_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_071525520.1\|2381950_2382061_+	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_002209968.1\|2382094_2382415_-	non-heme iron oxygenase ferredoxin subunit	NA	NA	NA	NA
WP_002209969.1\|2382574_2384554_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_002209971.1\|2385760_2386915_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.7e-126	62.1
WP_002228653.1\|2387107_2387620_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_002209973.1\|2387717_2388425_+	deoxyribonuclease I	NA	NA	NA	NA
WP_002209975.1\|2388676_2389408_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_002209976.1\|2389433_2390393_+	glutathione synthase	NA	NA	NA	NA
WP_002209977.1\|2390508_2391072_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_002209978.1\|2391071_2391494_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_002209979.1\|2391673_2392558_+	N-carbamoylputrescine amidase	A7IVZ1	Paramecium_bursaria_Chlorella_virus	3.1e-80	51.0
WP_002209980.1\|2392561_2393677_+	agmatine deiminase	M1I1E2	Acanthocystis_turfacea_Chlorella_virus	3.0e-96	50.7
WP_002209981.1\|2393785_2394910_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_002215609.1\|2394929_2395628_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_002209983.1\|2395760_2396582_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
WP_002209984.1\|2396869_2397424_+	YggT family protein	NA	NA	NA	NA
WP_002215612.1\|2397420_2397711_+	YggU family protein	NA	NA	NA	NA
WP_002215614.1\|2397810_2398404_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_002209987.1\|2398396_2399527_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_038905510.1\|2399716_2409049_-	pore forming RTX toxin family protein	NA	NA	NA	NA
WP_002209989.1\|2410389_2411316_-	glutaminase B	NA	NA	NA	NA
WP_002209990.1\|2411426_2411753_-	YggL family protein	NA	NA	NA	NA
WP_002209991.1\|2411752_2412472_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_002228057.1\|2412809_2413925_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_002230648.1\|2414102_2414375_+	oxidative damage protection protein	NA	NA	NA	NA
WP_002209995.1\|2414557_2415634_+	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA
WP_002209997.1\|2415950_2417051_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002209998.1\|2417154_2419188_+	TonB-dependent siderophore receptor	A0A0P0I887	Acinetobacter_phage	4.5e-05	26.1
WP_002209999.1\|2419270_2420254_-	ABC transporter permease	NA	NA	NA	NA
WP_002210000.1\|2420286_2421786_-	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.2e-19	31.7
WP_002210001.1\|2421831_2422791_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_002210002.1\|2423346_2425509_-	ornithine decarboxylase SpeF	NA	NA	NA	NA
WP_002210005.1\|2426837_2427473_-	DUF2345 domain-containing protein	NA	NA	NA	NA
WP_086016632.1\|2428080_2428778_-\|transposase	IS1 family transposase	A0A0U2RK18	Escherichia_phage	1.3e-60	48.5
WP_002210008.1\|2428873_2429641_-	hypothetical protein	NA	NA	NA	NA
WP_002210009.1\|2429627_2431925_-	M23 family metallopeptidase	NA	NA	NA	NA
WP_011906172.1\|2431940_2434289_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	1.2e-17	32.9
WP_002210013.1\|2434285_2436934_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	4.8e-92	29.5
WP_002210014.1\|2437351_2437843_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_002228049.1\|2437846_2439583_-	OmpA family protein	NA	NA	NA	NA
WP_002210015.1\|2439582_2440269_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_002211664.1\|2440265_2441618_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_041175540.1\|2441629_2443180_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_002213014.1\|2443222_2443723_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_002215900.1\|2445998_2446394_-	lipoprotein	NA	NA	NA	NA
WP_002215902.1\|2446844_2447495_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_9

2682385 : 2744708

uncultured_Mediterranean_phage(18.18%)

protease,tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002216203.1\|2682385_2682901_-\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	3.6e-28	55.6
WP_002210135.1\|2682906_2683548_-	stringent starvation protein A	NA	NA	NA	NA
WP_002230558.1\|2683727_2683925_+	hypothetical protein	NA	NA	NA	NA
WP_002210133.1\|2683921_2684314_-	30S ribosomal protein S9	NA	NA	NA	NA
WP_002210132.1\|2684328_2684757_-	50S ribosomal protein L13	NA	NA	NA	NA
WP_002210131.1\|2685069_2686197_-	cell division protein ZapE	NA	NA	NA	NA
WP_002210130.1\|2686420_2686825_+	DUF1043 family protein	NA	NA	NA	NA
WP_002218066.1\|2687095_2688469_+\|protease	serine endoprotease DegQ	A0A1B1IT49	uncultured_Mediterranean_phage	7.4e-20	28.2
WP_002213775.1\|2688585_2689044_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002210128.1\|2689269_2690358_+	outer membrane-stress sensor serine endopeptidase DegS	A0A1B1IRD3	uncultured_Mediterranean_phage	2.1e-09	31.8
WP_002210127.1\|2690538_2691801_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_002210126.1\|2691954_2692209_-	BolA family iron metabolism protein IbaG	NA	NA	NA	NA
WP_002210125.1\|2692355_2692658_-	lipid asymmetry maintenance protein MlaB	NA	NA	NA	NA
WP_002210124.1\|2692693_2693317_-	phospholipid-binding protein MlaC	NA	NA	NA	NA
WP_002210123.1\|2693329_2693887_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_002210122.1\|2693891_2694674_-	lipid asymmetry maintenance ABC transporter permease subunit MlaE	NA	NA	NA	NA
WP_002210121.1\|2694891_2695710_-	phospholipid ABC transporter ATP-binding protein MlaF	G3M9Y6	Bacillus_virus	2.2e-19	31.7
WP_038893343.1\|2695974_2696949_+	calcium/sodium antiporter	NA	NA	NA	NA
WP_002210119.1\|2697059_2698046_+	arabinose-5-phosphate isomerase KdsD	A0A2P0VNK5	Tetraselmis_virus	6.0e-40	30.8
WP_002228203.1\|2698154_2698718_+	3-deoxy-manno-octulosonate-8-phosphatase KdsC	A0A140XBD6	Dickeya_phage	9.6e-59	83.0
WP_002218352.1\|2698714_2699278_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_002210117.1\|2699261_2699807_+	lipopolysaccharide ABC transporter substrate-binding protein LptA	NA	NA	NA	NA
WP_011906149.1\|2699813_2700539_+	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-22	28.4
WP_002210115.1\|2700600_2702034_+	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_002213952.1\|2702462_2702945_+	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_002210113.1\|2703250_2704105_+	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	3.2e-05	30.0
WP_002210112.1\|2704101_2704374_+	PTS phosphocarrier protein NPr	NA	NA	NA	NA
WP_002210111.1\|2704711_2705647_+	aspartate carbamoyltransferase	M1HWF9	Paramecium_bursaria_Chlorella_virus	1.5e-48	38.5
WP_002210110.1\|2705658_2706123_+	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA
WP_002210109.1\|2706260_2706647_+	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA
WP_002210107.1\|2706945_2707422_+	hypothetical protein	NA	NA	NA	NA
WP_016674079.1\|2707655_2708609_+	HTH-type transcriptional regulator TreR	NA	NA	NA	NA
WP_002215779.1\|2709019_2710435_+	PTS trehalose transporter subunit IIBC	NA	NA	NA	NA
WP_002210104.1\|2710529_2712197_+	alpha,alpha-phosphotrehalase	NA	NA	NA	NA
WP_002210103.1\|2712549_2712960_+	nucleoside diphosphate kinase regulator	NA	NA	NA	NA
WP_002210102.1\|2713199_2713586_-	cytochrome b562	NA	NA	NA	NA
WP_011055205.1\|2713793_2714438_-	hypothetical protein	A0A1B0VBK8	Salmonella_phage	3.4e-52	49.0
WP_002210100.1\|2714686_2716027_-\|protease	metalloprotease PmbA	NA	NA	NA	NA
WP_002210099.1\|2716207_2716756_+	ribosome-associated protein	NA	NA	NA	NA
WP_002210098.1\|2716867_2717149_-	ribonuclease inhibitor	NA	NA	NA	NA
WP_002214288.1\|2717153_2717627_-	ribonuclease Ba	NA	NA	NA	NA
WP_002210095.1\|2719556_2721512_-	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA
WP_002210094.1\|2721513_2722449_-	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA
WP_002210093.1\|2722456_2722660_-	AaeX family protein	NA	NA	NA	NA
WP_002210092.1\|2722962_2723874_+	HTH-type transcriptional activator AaeR	NA	NA	NA	NA
WP_002214297.1\|2724134_2725001_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002210090.1\|2725236_2727738_+	toxin	NA	NA	NA	NA
WP_002220204.1\|2727778_2731372_+\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_002210089.1\|2731428_2735919_+	toxin	NA	NA	NA	NA
WP_002214300.1\|2736052_2736355_+	hypothetical protein	NA	NA	NA	NA
WP_016674138.1\|2736367_2736790_+	M15 family metallopeptidase	A0A249XWK9	Proteus_phage	7.0e-30	53.6
WP_002210086.1\|2736786_2737146_+	DUF2570 domain-containing protein	NA	NA	NA	NA
WP_002210084.1\|2737346_2740178_+	RHS repeat protein	NA	NA	NA	NA
WP_071845066.1\|2740202_2740985_+	RHS repeat protein	NA	NA	NA	NA
WP_002378891.1\|2741335_2743060_+	RHS repeat protein	NA	NA	NA	NA
WP_002210082.1\|2743262_2744708_-\|protease	metalloprotease TldD	NA	NA	NA	NA

DBSCAN-SWA_10

3043857 : 3097741

Erysipelothrix_phage(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213775.1\|3043857_3044316_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002209332.1\|3044558_3045983_-	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	1.0e-40	27.9
WP_002209330.1\|3046288_3047818_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA
WP_002209329.1\|3047831_3050495_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA
WP_002216080.1\|3050690_3051455_-	pyruvate dehydrogenase complex transcriptional repressor PdhR	NA	NA	NA	NA
WP_002209327.1\|3052317_3053715_+	amino acid permease	NA	NA	NA	NA
WP_002209326.1\|3054147_3055002_-	beta-lactamase regulator AmpE	NA	NA	NA	NA
WP_002209325.1\|3055291_3055843_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	NA	NA	NA
WP_002209324.1\|3055955_3056864_+	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA
WP_002209323.1\|3057066_3057531_+	prepilin peptidase-dependent pilin	NA	NA	NA	NA
WP_002216083.1\|3057523_3059062_+	type II secretion system protein GspE	NA	NA	NA	NA
WP_002209321.1\|3059058_3060258_+	protein transport protein HofC	NA	NA	NA	NA
WP_002209320.1\|3060652_3061696_-	GMP reductase	A0A0N9Q9A5	Chrysochromulina_ericina_virus	6.3e-104	56.2
WP_002209319.1\|3061991_3062612_+	dephospho-CoA kinase	NA	NA	NA	NA
WP_002209318.1\|3062608_3063361_+	cell division protein ZapD	NA	NA	NA	NA
WP_002209317.1\|3063546_3063753_+	DNA gyrase inhibitor YacG	NA	NA	NA	NA
WP_002213759.1\|3063942_3064401_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_011901829.1\|3064511_3065534_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.2e-200	99.7
WP_002210424.1\|3066573_3066960_-	8-oxo-dGTP diphosphatase MutT	A0A0B5CYJ3	Rhizoctonia_fumigata_mycovirus	8.4e-06	30.4
WP_002210426.1\|3067254_3069969_-	preprotein translocase subunit SecA	NA	NA	NA	NA
WP_002210427.1\|3070046_3070580_-	secA regulator SecM	NA	NA	NA	NA
WP_002210428.1\|3070608_3071133_+	DUF721 domain-containing protein	NA	NA	NA	NA
WP_002228285.1\|3071299_3072220_-	UDP-3-O-acyl-N-acetylglucosamine deacetylase	NA	NA	NA	NA
WP_002210430.1\|3072319_3073471_-	cell division protein FtsZ	NA	NA	NA	NA
WP_002210431.1\|3073543_3074800_-	cell division protein FtsA	NA	NA	NA	NA
WP_002228100.1\|3074826_3075654_-	cell division protein FtsQ	NA	NA	NA	NA
WP_002210432.1\|3075655_3076576_-	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_002216457.1\|3076568_3078044_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA
WP_011906408.1\|3078181_3079252_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA
WP_002210435.1\|3079248_3080451_-	cell division protein FtsW	NA	NA	NA	NA
WP_002210436.1\|3080450_3081767_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA
WP_002210437.1\|3081769_3082852_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA
WP_002210438.1\|3082845_3084222_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA
WP_002210439.1\|3084218_3085706_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA
WP_011906409.1\|3085692_3087456_-	peptidoglycan glycosyltransferase FtsI	NA	NA	NA	NA
WP_002210441.1\|3087521_3087839_-	cell division protein FtsL	NA	NA	NA	NA
WP_011906410.1\|3087835_3088792_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA
WP_002210443.1\|3088794_3089253_-	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA
WP_087768171.1\|3089807_3089897_-	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_002210446.1\|3090354_3090795_+	L-alanine exporter AlaE	NA	NA	NA	NA
WP_002213759.1\|3090994_3091453_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002210447.1\|3091636_3092647_-	catabolite repressor/activator	NA	NA	NA	NA
WP_002213775.1\|3093151_3093610_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002424260.1\|3093808_3094333_-	acetolactate synthase small subunit	NA	NA	NA	NA
WP_011906411.1\|3094305_3096033_-	acetolactate synthase 3 large subunit	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	2.3e-58	29.2
WP_002209743.1\|3096532_3097741_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8

Anti-CRISPR protein detection

Acr_ID: NZ_CP006783.1|WP_002214494.1|1437259_1437616_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP006783.1|WP_002214494.1|1437259_1437616_-|hypothetical-protein

1437259_1437616_-

118 aa aa

HTH_GNTR

Identity	Hit_domain_coverage
0.4166666666666667	1.0

1397290-1492311

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location
NZ_CP006783_1	Orphan	1.1\|10914\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	10914-10945	32	1466160-1466129
NZ_CP006783_1	Orphan	1.2\|10974\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	10974-11005	32	1465262-1465293
NZ_CP006783_1	Orphan	1.6\|11216\|32\|NZ_CP006783\|CRISPRCasFinder,CRT	11216-11247	32	1465751-1465720
NZ_CP006783_2	TypeI-F	2.1\|921955\|32\|NZ_CP006783\|PILER-CR,CRISPRCasFinder,CRT	921955-921986	32	1474493-1474462
NZ_CP006783_3	Orphan	3.4\|1903049\|33\|NZ_CP006783\|CRISPRCasFinder,CRT,PILER-CR	1903049-1903081	33	1467163-1467195
NZ_CP006783_3	Orphan	3.5\|1903110\|32\|NZ_CP006783\|CRISPRCasFinder,CRT,PILER-CR	1903110-1903141	32	1466754-1466785

1. spacer 1.1|10914|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006783 position: 1466160-1466129, mismatch: 0

cacggcggtggtgaaaacggctgtcactcata	CRISPR spacer
cacggcggtggtgaaaacggctgtcactcata	Protospacer
********************************

2. spacer 1.2|10974|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006783 position: 1465262-1465293, mismatch: 0

gaatcgttgcaggatagttttcaccgcgtccg	CRISPR spacer
gaatcgttgcaggatagttttcaccgcgtccg	Protospacer
********************************

3. spacer 1.6|11216|32|NZ_CP006783|CRISPRCasFinder,CRT matches to NZ_CP006783 position: 1465751-1465720, mismatch: 0

agactgatgcaagatggcggtatgcgtacaga	CRISPR spacer
agactgatgcaagatggcggtatgcgtacaga	Protospacer
********************************

4. spacer 2.1|921955|32|NZ_CP006783|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006783 position: 1474493-1474462, mismatch: 0

caagtcctcggcatggtcgccctcattggtga	CRISPR spacer
caagtcctcggcatggtcgccctcattggtga	Protospacer
********************************

5. spacer 3.4|1903049|33|NZ_CP006783|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006783 position: 1467163-1467195, mismatch: 0

ttggcaatcatgtttggctgcgcttggttaaac	CRISPR spacer
ttggcaatcatgtttggctgcgcttggttaaac	Protospacer
*********************************

6. spacer 3.5|1903110|32|NZ_CP006783|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006783 position: 1466754-1466785, mismatch: 0

tgtcaggctgggactctgatttttcaattcgt	CRISPR spacer
tgtcaggctgggactctgatttttcaattcgt	Protospacer
********************************

3. NZ_CP006779

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

31 : 65316

Salmonella_phage(30.0%)

tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002221060.1\|31_493_+	DUF4376 domain-containing protein	Q9LA61	Enterobacterial_phage	3.1e-23	40.8
WP_002211770.1\|573_3462_+\|tail	phage tail protein	J9Q6E3	Salmonella_phage	4.5e-11	33.1
WP_002211769.1\|3763_4372_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	4.8e-64	62.2
WP_001297096.1\|4505_5285_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_011906282.1\|5284_6307_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.6e-200	99.7
WP_002211744.1\|6430_8440_-	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	7.7e-26	30.3
WP_002211745.1\|8512_8743_-	DUF905 domain-containing protein	NA	NA	NA	NA
WP_002211746.1\|9455_9962_-	antirestriction protein	A0A1I9S7Y0	Rhodococcus_phage	1.1e-08	29.5
WP_002211747.1\|10360_11140_-	hypothetical protein	NA	NA	NA	NA
WP_002215082.1\|11193_11613_-	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_002211748.1\|11623_11845_-	hypothetical protein	NA	NA	NA	NA
WP_002211749.1\|11844_12522_-	DNA methylase	A0A2I7RE86	Vibrio_phage	1.6e-28	36.9
WP_002211750.1\|13022_13223_+	hypothetical protein	NA	NA	NA	NA
WP_002228775.1\|13384_14782_-	AAA family ATPase	NA	NA	NA	NA
WP_002215070.1\|15160_16132_-	ParB/RepB/Spo0J family partition protein	Q1MVJ4	Enterobacteria_phage	1.5e-112	67.3
WP_002211752.1\|16128_17334_-	ParA family protein	Q1MVJ3	Enterobacteria_phage	1.7e-206	90.5
WP_002211753.1\|17635_17863_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_002215068.1\|17862_18189_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_002211754.1\|18388_19009_+	recombinase family protein	A0A1V0E035	Clostridioides_phage	6.5e-08	31.1
WP_002215065.1\|19074_20016_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	1.0e-68	54.8
WP_002211756.1\|20038_20314_-	hypothetical protein	NA	NA	NA	NA
WP_002211757.1\|21052_21541_+	phospholipase D family protein	NA	NA	NA	NA
WP_002211758.1\|21618_23382_+	phospholipase D	NA	NA	NA	NA
WP_002211760.1\|25457_26480_-\|transposase	IS110-like element IS1618 family transposase	NA	NA	NA	NA
WP_086028848.1\|27686_28562_-	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_011201829.1\|28542_28620_-	RepA leader peptide Tap	NA	NA	NA	NA
WP_100228227.1\|28838_28982_-	hypothetical protein	NA	NA	NA	NA
WP_011201827.1\|28959_29514_-	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	7.8e-21	33.1
WP_011901848.1\|29661_30453_-	DsbA family protein	NA	NA	NA	NA
WP_008324922.1\|30445_31165_-	fertility inhibition protein FinO	NA	NA	NA	NA
WP_011901847.1\|31231_31969_-	type-F conjugative transfer system pilin acetylase TraX	NA	NA	NA	NA
WP_016674165.1\|31970_37211_-	conjugative transfer relaxase/helicase TraI	NA	NA	NA	NA
WP_016674166.1\|37210_39322_-	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA
WP_002209743.1\|39403_40612_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_071589830.1\|40635_40764_+	TraY domain-containing protein	NA	NA	NA	NA
WP_011901844.1\|40821_41172_+	type IV conjugative transfer system pilin TraA	NA	NA	NA	NA
WP_011201805.1\|41322_41628_+	type IV conjugative transfer system protein TraL	NA	NA	NA	NA
WP_011201806.1\|41642_42209_+	type IV conjugative transfer system protein TraE	NA	NA	NA	NA
WP_011201807.1\|42195_42939_+	type-F conjugative transfer system secretin TraK	NA	NA	NA	NA
WP_011901843.1\|42925_44320_+	conjugal transfer protein TraB	NA	NA	NA	NA
WP_011201809.1\|44341_44881_+	type IV conjugative transfer system lipoprotein TraV	NA	NA	NA	NA
WP_016674195.1\|45000_45225_+	molecular chaperone DnaK	NA	NA	NA	NA
WP_016674194.1\|45228_45414_+	hypothetical protein	NA	NA	NA	NA
WP_016674193.1\|45397_45802_+	hypothetical protein	NA	NA	NA	NA
WP_011201812.1\|45791_46358_+	conjugal transfer protein TraP	NA	NA	NA	NA
WP_011901842.1\|46350_48981_+	type IV secretion system protein TraC	NA	NA	NA	NA
WP_011201813.1\|48977_49325_+	type-F conjugative transfer system protein TrbI	NA	NA	NA	NA
WP_011901841.1\|49324_49972_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA
WP_032485960.1\|49974_50961_+	conjugal transfer pilus assembly protein TraU	NA	NA	NA	NA
WP_016674192.1\|50977_51607_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA
WP_011201817.1\|51603_53454_+	type-F conjugative transfer system mating-pair stabilization protein TraN	NA	NA	NA	NA
WP_016674191.1\|53485_53674_+	hypothetical protein	NA	NA	NA	NA
WP_011201818.1\|53704_54454_+	type-F conjugative transfer system pilin assembly protein TraF	NA	NA	NA	NA
WP_011901838.1\|54470_54719_+	type-F conjugative transfer system pilin chaperone TraQ	NA	NA	NA	NA
WP_011901837.1\|54708_55254_+	type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB	NA	NA	NA	NA
WP_011201821.1\|55250_56624_+	conjugal transfer protein TraH	NA	NA	NA	NA
WP_011201822.1\|56623_59443_+	conjugal transfer mating pair stabilization protein TraG	NA	NA	NA	NA
WP_050879647.1\|59563_60772_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002224263.1\|60805_61528_-	DUF4145 domain-containing protein	NA	NA	NA	NA
WP_002224265.1\|61780_62575_+	hypothetical protein	J9Q7Z0	Salmonella_phage	3.7e-141	96.6
WP_016256030.1\|62875_63133_+	hypothetical protein	J9Q7R9	Salmonella_phage	3.4e-35	95.3
WP_002231172.1\|63167_64490_+	DNA ligase	J9Q7G5	Salmonella_phage	1.6e-258	99.1
WP_002224361.1\|64649_64865_+	hypothetical protein	J9Q6I3	Salmonella_phage	7.7e-33	98.6
WP_002224363.1\|65010_65316_+	hypothetical protein	J9Q7S1	Salmonella_phage	3.2e-48	97.0

DBSCAN-SWA_2

73785 : 136876

Salmonella_phage(96.77%)

terminase,tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002211766.1\|73785_76152_+	porphyrin biosynthesis protein	J9Q7G6	Salmonella_phage	0.0e+00	94.4
WP_002211767.1\|76248_77484_+	AAA domain-containing protein	J9Q733	Salmonella_phage	3.0e-238	99.3
WP_002221186.1\|77664_81189_+	DNA polymerase III subunit alpha	J9Q7Z2	Salmonella_phage	0.0e+00	99.2
WP_002425587.1\|81203_81629_+	hypothetical protein	J9Q7S4	Salmonella_phage	7.5e-72	100.0
WP_011201800.1\|81658_82222_-	DNA-binding protein	J9Q7G7	Salmonella_phage	2.6e-64	65.1
WP_002215095.1\|82294_82546_-	hypothetical protein	NA	NA	NA	NA
WP_002213135.1\|82766_83198_+	hypothetical protein	J9Q6I8	Salmonella_phage	2.6e-72	98.6
WP_002213132.1\|83317_84346_+	hypothetical protein	J9Q7Z3	Salmonella_phage	1.3e-165	98.5
WP_002225551.1\|84406_85351_+	exonuclease	J9Q7S6	Salmonella_phage	1.3e-180	99.0
WP_000920226.1\|85350_85617_+	hypothetical protein	J9Q7G8	Salmonella_phage	1.6e-40	100.0
WP_161597819.1\|85664_86696_+	recombinase	J9Q736	Salmonella_phage	6.9e-196	99.1
WP_002213439.1\|86786_86987_+	hypothetical protein	J9Q6J0	Salmonella_phage	1.1e-25	97.0
WP_002222866.1\|86990_87821_+	hypothetical protein	J9Q7Z4	Salmonella_phage	9.3e-127	98.6
WP_002222868.1\|87974_88346_+	DUF2591 domain-containing protein	J9Q7S7	Salmonella_phage	4.0e-61	87.8
WP_002222869.1\|88329_88740_+	hypothetical protein	J9Q7G9	Salmonella_phage	4.1e-75	97.8
WP_002228797.1\|88807_89083_+	hypothetical protein	J9Q738	Salmonella_phage	1.7e-45	95.6
WP_002228796.1\|89123_89303_+	hypothetical protein	J9Q6J1	Salmonella_phage	5.8e-18	86.4
WP_002227818.1\|89299_89635_+	hypothetical protein	J9Q7Z5	Salmonella_phage	5.2e-52	91.0
WP_002222711.1\|89634_89847_+	hypothetical protein	J9Q7S8	Salmonella_phage	6.8e-34	95.7
WP_002214164.1\|90415_91480_-	replication protein RepA	J9Q7H0	Salmonella_phage	2.4e-188	98.6
WP_002389821.1\|92664_92889_+	hypothetical protein	J9Q739	Salmonella_phage	1.5e-34	97.3
WP_002213298.1\|93248_94271_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002213300.1\|94686_95772_+	exonuclease	J9Q7S9	Salmonella_phage	7.7e-206	98.6
WP_038918515.1\|97558_97918_+	hypothetical protein	J9Q741	Salmonella_phage	5.2e-58	100.0
WP_002213303.1\|97907_98654_+	hypothetical protein	J9Q6J5	Salmonella_phage	4.1e-134	96.4
WP_011201798.1\|98666_99236_+	hypothetical protein	J9Q7Z7	Salmonella_phage	3.8e-103	99.5
WP_002231165.1\|99313_101629_+	ribonucleoside-diphosphate reductase subunit alpha	J9Q7T0	Salmonella_phage	0.0e+00	98.8
WP_002231164.1\|101736_102879_+	ribonucleotide-diphosphate reductase subunit beta	J9Q7H3	Salmonella_phage	1.7e-219	100.0
WP_011901832.1\|103077_103833_+	hypothetical protein	J9Q742	Salmonella_phage	3.8e-135	98.4
WP_002213775.1\|104071_104530_+\|transposase	IS200/IS605-like element IS1541B family transposase	D9CGB6	Hyperthermophilic_Archaeal_Virus_2	5.0e-13	35.3
WP_002211802.1\|104729_105011_+	hypothetical protein	J9Q753	Salmonella_phage	6.1e-46	93.5
WP_002211801.1\|105216_105699_+	hypothetical protein	J9Q805	Salmonella_phage	5.1e-85	94.4
WP_002213759.1\|106374_106833_-\|transposase	IS200/IS605-like element IS1541A family transposase	D9CGB6	Hyperthermophilic_Archaeal_Virus_2	5.0e-13	35.3
WP_002214137.1\|107058_107286_-	hypothetical protein	NA	NA	NA	NA
WP_002211799.1\|107370_108021_-	hypothetical protein	J9Q754	Salmonella_phage	4.1e-114	99.5
WP_002214134.1\|108344_108872_-	transcriptional regulator	J9Q6L0	Salmonella_phage	6.4e-81	98.0
WP_002211796.1\|108876_109299_-	hypothetical protein	J9Q806	Salmonella_phage	4.1e-62	85.0
WP_002214131.1\|109358_109637_-	hypothetical protein	J9Q7T9	Salmonella_phage	4.4e-41	97.8
WP_002211794.1\|109639_111199_-	DEAD/DEAH box helicase	J9Q7I4	Salmonella_phage	1.1e-293	99.0
WP_002228791.1\|111275_111974_+	ParB N-terminal domain-containing protein	J9Q756	Salmonella_phage	9.6e-125	98.7
WP_002211792.1\|111973_112642_+	ParB N-terminal domain-containing protein	J9Q6L1	Salmonella_phage	9.5e-114	98.2
WP_002211791.1\|112638_113277_+	ATP-binding cassette domain-containing protein	J9Q807	Salmonella_phage	4.7e-110	98.1
WP_002211790.1\|113269_113524_+	hypothetical protein	J9Q7U0	Salmonella_phage	2.0e-40	97.6
WP_002211789.1\|113529_114420_+	hypothetical protein	J9Q7I6	Salmonella_phage	6.2e-169	99.7
WP_000176291.1\|114429_114696_+	hypothetical protein	J9Q757	Salmonella_phage	1.3e-42	100.0
WP_002211788.1\|114891_115533_+	hypothetical protein	J9Q6D4	Salmonella_phage	1.2e-108	98.1
WP_002211787.1\|115535_116792_+\|terminase	terminase	J9Q7Y2	Salmonella_phage	1.8e-251	100.0
WP_025476623.1\|116825_118400_+	hypothetical protein	J9Q7R1	Salmonella_phage	6.4e-302	99.4
WP_002231160.1\|118422_119319_+	hypothetical protein	J9Q7F4	Salmonella_phage	3.9e-147	96.3
WP_002211784.1\|119345_120221_+	hypothetical protein	J9Q710	Salmonella_phage	8.5e-163	99.7
WP_002211783.1\|120295_120958_+	Ig domain-containing protein	J9Q6D6	Salmonella_phage	8.5e-107	97.2
WP_002211782.1\|121001_121436_+	hypothetical protein	J9Q7Y3	Salmonella_phage	3.1e-73	99.3
WP_002211781.1\|121435_122269_+	hypothetical protein	J9Q7R2	Salmonella_phage	2.9e-152	99.6
WP_001027662.1\|122366_122711_+	hypothetical protein	J9Q7F6	Salmonella_phage	1.9e-57	100.0
WP_002211780.1\|122701_123175_+	hypothetical protein	J9Q711	Salmonella_phage	8.9e-82	99.4
WP_002211779.1\|123176_123560_+	hypothetical protein	J9Q6D8	Salmonella_phage	1.1e-66	98.4
WP_002211778.1\|123634_124381_+	Ig domain-containing protein	J9Q7Y4	Salmonella_phage	5.2e-129	98.8
WP_000163862.1\|124440_124758_+	hypothetical protein	J9Q7R3	Salmonella_phage	6.0e-50	98.1
WP_000952684.1\|124883_125108_+	hypothetical protein	J9Q7F7	Salmonella_phage	4.2e-34	100.0
WP_002211776.1\|125115_129693_+	tape measure protein	J9Q712	Salmonella_phage	0.0e+00	90.5
WP_000440566.1\|129734_130070_+\|tail	phage tail protein	J9Q6E1	Salmonella_phage	5.7e-59	97.3
WP_011901831.1\|130159_130858_+\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	6.4e-137	99.6
WP_002211774.1\|130850_131648_+\|tail	tail protein	J9Q7R4	Salmonella_phage	1.4e-156	96.2
WP_002211773.1\|131635_132223_+\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	5.1e-103	92.8
WP_011901830.1\|132244_136876_+	DUF1983 domain-containing protein	J9Q713	Salmonella_phage	0.0e+00	88.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP006780

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP006783

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

3. NZ_CP006779

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection