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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP006751 Yersinia pestis 3770 chromosome, complete genome 6 crisprs cas3,DEDDh,csa3,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1 6 10 11 1
NZ_CP006750 Yersinia pestis 3770 plasmid pCD1, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP006749 Yersinia pestis 3770 plasmid pMT1, complete sequence 0 crisprs NA 0 0 2 0

Results visualization

1. NZ_CP006751
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP006751_1 554746-555135 Orphan I-F
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP006751_2 854995-855106 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP006751_3 2431030-2431317 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP006751_4 3064187-3064308 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP006751_5 3189904-3190232 Orphan I-F
5 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP006751_6 4166875-4167324 TypeI-F I-F
7 spacers
cas1,cas3f,cas8f,cas5f,cas7f,cas6f

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP006751_1 1.1|554774|32|NZ_CP006751|CRISPRCasFinder,CRT 554774-554805 32 NZ_CP006751.1 3627024-3627055 0 1.0
NZ_CP006751_1 1.5|555016|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 555016-555047 32 NZ_CP006751.1 3627482-3627513 0 1.0
NZ_CP006751_1 1.6|555076|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 555076-555107 32 NZ_CP006751.1 3626615-3626646 0 1.0
NZ_CP006751_5 5.1|3189932|32|NZ_CP006751|PILER-CR,CRISPRCasFinder,CRT 3189932-3189963 32 NZ_CP006751.1 3625990-3626021 0 1.0
NZ_CP006751_5 5.2|3189992|33|NZ_CP006751|PILER-CR,CRISPRCasFinder,CRT 3189992-3190024 33 NZ_CP006751.1 3625580-3625612 0 1.0
NZ_CP006751_6 6.7|4167265|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167265-4167296 32 NZ_CP006751.1 3618282-3618313 0 1.0

1. spacer 1.1|554774|32|NZ_CP006751|CRISPRCasFinder,CRT matches to position: 3627024-3627055, mismatch: 0, identity: 1.0

tctgtacgcataccgccatcttgcatcagtct	CRISPR spacer
tctgtacgcataccgccatcttgcatcagtct	Protospacer
********************************

2. spacer 1.5|555016|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to position: 3627482-3627513, mismatch: 0, identity: 1.0

cggacgcggtgaaaactatcctgcaacgattc	CRISPR spacer
cggacgcggtgaaaactatcctgcaacgattc	Protospacer
********************************

3. spacer 1.6|555076|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to position: 3626615-3626646, mismatch: 0, identity: 1.0

tatgagtgacagccgttttcaccaccgccgtg	CRISPR spacer
tatgagtgacagccgttttcaccaccgccgtg	Protospacer
********************************

4. spacer 5.1|3189932|32|NZ_CP006751|PILER-CR,CRISPRCasFinder,CRT matches to position: 3625990-3626021, mismatch: 0, identity: 1.0

acgaattgaaaaatcagagtcccagcctgaca	CRISPR spacer
acgaattgaaaaatcagagtcccagcctgaca	Protospacer
********************************

5. spacer 5.2|3189992|33|NZ_CP006751|PILER-CR,CRISPRCasFinder,CRT matches to position: 3625580-3625612, mismatch: 0, identity: 1.0

gtttaaccaagcgcagccaaacatgattgccaa	CRISPR spacer
gtttaaccaagcgcagccaaacatgattgccaa	Protospacer
*********************************

6. spacer 6.7|4167265|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to position: 3618282-3618313, mismatch: 0, identity: 1.0

tcaccaatgagggcgaccatgccgaggacttg	CRISPR spacer
tcaccaatgagggcgaccatgccgaggacttg	Protospacer
********************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP006751_1 1.1|554774|32|NZ_CP006751|CRISPRCasFinder,CRT 554774-554805 32 MT374852 Yersinia phage vB_YpM_3, complete genome 12-43 0 1.0
NZ_CP006751_6 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167083-4167114 32 MK820641 Gordonia phage EnalisNailo, complete genome 34088-34119 6 0.812
NZ_CP006751_6 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167083-4167114 32 MK878898 Gordonia phage Zameen, complete genome 34513-34544 6 0.812
NZ_CP006751_6 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167083-4167114 32 MK919483 Gordonia phage Suscepit, complete genome 34514-34545 6 0.812
NZ_CP006751_6 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167083-4167114 32 MK284520 Gordonia phage Lilas, complete genome 35799-35830 6 0.812
NZ_CP006751_6 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167083-4167114 32 MK016492 Gordonia phage Bialota, complete genome 35265-35296 6 0.812
NZ_CP006751_6 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167083-4167114 32 MK820642 Gordonia phage Polly, complete genome 33956-33987 6 0.812
NZ_CP006751_6 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167083-4167114 32 NC_041883 Gordonia phage Attis, complete genome 31646-31677 6 0.812
NZ_CP006751_6 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167083-4167114 32 MK814755 Gordonia phage Antonio, complete genome 34513-34544 6 0.812
NZ_CP006751_6 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167083-4167114 32 MK875796 Gordonia phage Tayonia, complete genome 34513-34544 6 0.812
NZ_CP006751_6 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167083-4167114 32 MK801734 Gordonia phage LordFarquaad, complete genome 31627-31658 6 0.812
NZ_CP006751_6 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167083-4167114 32 MK433274 Gordonia phage Bradissa, complete genome 34554-34585 6 0.812
NZ_CP006751_6 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167083-4167114 32 KU963257 Gordonia phage Kita, complete genome 34522-34553 6 0.812
NZ_CP006751_6 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167083-4167114 32 NC_031251 Gordonia phage SoilAssassin, complete genome 31645-31676 6 0.812
NZ_CP006751_6 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167083-4167114 32 NC_031097 Gordonia phage Zirinka, complete genome 35253-35284 6 0.812
NZ_CP006751_6 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167083-4167114 32 NZ_CP005086 Sphingobium sp. TKS plasmid pTK2, complete sequence 138555-138586 6 0.812
NZ_CP006751_1 1.6|555076|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 555076-555107 32 MN509793 Pectobacterium phage MA13, partial genome 58-89 7 0.781
NZ_CP006751_5 5.4|3190113|32|NZ_CP006751|PILER-CR,CRISPRCasFinder,CRT 3190113-3190144 32 MH616963 CrAssphage sp. isolate ctbg_1, complete genome 86942-86973 7 0.781
NZ_CP006751_6 6.1|4166903|32|NZ_CP006751|CRISPRCasFinder,CRT 4166903-4166934 32 CP049262 Cronobacter sakazakii strain CS-09 plasmid pCsaCS09b, complete sequence 69636-69667 7 0.781
NZ_CP006751_6 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167023-4167054 32 JF974294 Aeromonas phage pIS4-A genomic sequence 21965-21996 7 0.781
NZ_CP006751_6 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167023-4167054 32 NC_021534 Vibrio phage pYD38-A genomic sequence 3299-3330 7 0.781
NZ_CP006751_6 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167083-4167114 32 NZ_AP014579 Burkholderia sp. RPE67 plasmid p1, complete sequence 440819-440850 7 0.781
NZ_CP006751_6 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167083-4167114 32 NC_016626 Burkholderia sp. YI23 plasmid byi_1p, complete sequence 282870-282901 7 0.781
NZ_CP006751_6 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167083-4167114 32 KJ433975 Mycobacterium phage 40BC, complete genome 23231-23262 7 0.781
NZ_CP006751_6 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167083-4167114 32 KJ433973 Mycobacterium phage 39HC, complete genome 23231-23262 7 0.781
NZ_CP006751_6 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167083-4167114 32 NC_024145 Mycobacterium phage Hosp, complete genome 21427-21458 7 0.781
NZ_CP006751_6 6.6|4167203|34|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167203-4167236 34 MK416013 Klebsiella phage ST16-OXA48phi5.1, complete genome 41421-41454 7 0.794
NZ_CP006751_6 6.6|4167203|34|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167203-4167236 34 MK448237 Klebsiella phage ST974-OXA48phi18.2, complete genome 36685-36718 7 0.794
NZ_CP006751_6 6.7|4167265|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167265-4167296 32 NC_015561 Hoyosella subflava DQS3-9A1 plasmid pAS9A-2, complete sequence 99067-99098 7 0.781
NZ_CP006751_5 5.4|3190113|32|NZ_CP006751|PILER-CR,CRISPRCasFinder,CRT 3190113-3190144 32 NZ_CP010358 Acinetobacter johnsonii XBB1 plasmid pXBB1-8, complete sequence 46720-46751 8 0.75
NZ_CP006751_5 5.4|3190113|32|NZ_CP006751|PILER-CR,CRISPRCasFinder,CRT 3190113-3190144 32 NC_019694 Oscillatoria acuminata PCC 6304 plasmid pOSCIL6304.02, complete sequence 20911-20942 8 0.75
NZ_CP006751_1 1.3|554895|33|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 554895-554927 33 NZ_CP040366 Bacillus flexus isolate 1-2-1 plasmid punnamed3, complete sequence 923-955 9 0.727
NZ_CP006751_5 5.4|3190113|32|NZ_CP006751|PILER-CR,CRISPRCasFinder,CRT 3190113-3190144 32 MT774386 CrAssphage cr110_1, complete genome 42858-42889 9 0.719
NZ_CP006751_5 5.4|3190113|32|NZ_CP006751|PILER-CR,CRISPRCasFinder,CRT 3190113-3190144 32 NZ_CP028934 Campylobacter jejuni strain FORC_083 plasmid pFORC_083_2, complete sequence 25849-25880 9 0.719
NZ_CP006751_6 6.2|4166963|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4166963-4166994 32 NZ_CP031943 Nostoc sphaeroides strain Kutzing En plasmid p2, complete sequence 4006-4037 9 0.719
NZ_CP006751_6 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167023-4167054 32 MF679145 Escherichia coli plasmid pBJ114-96, complete sequence 37586-37617 9 0.719
NZ_CP006751_6 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167023-4167054 32 NZ_KP453775 Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence 60831-60862 9 0.719
NZ_CP006751_6 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167023-4167054 32 NZ_CP021340 Escherichia coli strain 95NR1 plasmid p95NR1A, complete sequence 67671-67702 9 0.719
NZ_CP006751_6 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167023-4167054 32 NZ_CP021336 Escherichia coli strain 95JB1 plasmid p95JB1A, complete sequence 67672-67703 9 0.719
NZ_CP006751_6 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167023-4167054 32 NZ_CP040920 Escherichia coli strain FC853_EC plasmid p853EC1, complete sequence 33435-33466 9 0.719
NZ_CP006751_6 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167023-4167054 32 NZ_CP024832 Escherichia coli strain CREC-532 plasmid pCREC-532_2, complete sequence 33830-33861 9 0.719
NZ_CP006751_6 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167023-4167054 32 NZ_CP024817 Escherichia coli strain CREC-629 plasmid pCREC-629_2, complete sequence 62769-62800 9 0.719
NZ_CP006751_6 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167023-4167054 32 NZ_CP029117 Escherichia coli strain AR435 plasmid unnamed4 15616-15647 9 0.719
NZ_CP006751_6 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167023-4167054 32 NZ_CP029117 Escherichia coli strain AR435 plasmid unnamed4 112580-112611 9 0.719
NZ_CP006751_6 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167023-4167054 32 NZ_CP023961 Escherichia coli strain FDAARGOS_448 plasmid unnamed2, complete sequence 16858-16889 9 0.719
NZ_CP006751_6 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167023-4167054 32 AP023222 Escherichia coli M505 plasmid pM505-b DNA, complete genome 93734-93765 9 0.719
NZ_CP006751_6 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167023-4167054 32 AP023233 Escherichia coli YJ4 plasmid pYJ4-b DNA, complete genome 47570-47601 9 0.719
NZ_CP006751_6 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167023-4167054 32 NZ_CP019075 Escherichia coli strain CRE1493 plasmid p1493-4, complete sequence 16520-16551 9 0.719
NZ_CP006751_6 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167023-4167054 32 NZ_CP015837 Escherichia coli strain MS6198 plasmid pMS6198C, complete sequence 3287-3318 9 0.719
NZ_CP006751_6 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167023-4167054 32 NZ_CP011063 Escherichia coli str. Sanji plasmid pSJ_98, complete sequence 37637-37668 9 0.719
NZ_CP006751_6 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR 4167083-4167114 32 NZ_JX627581 Methylobacterium oryzae CBMB20 plasmid pMOC2, complete sequence 30496-30527 10 0.688

1. spacer 1.1|554774|32|NZ_CP006751|CRISPRCasFinder,CRT matches to MT374852 (Yersinia phage vB_YpM_3, complete genome) position: , mismatch: 0, identity: 1.0

tctgtacgcataccgccatcttgcatcagtct	CRISPR spacer
tctgtacgcataccgccatcttgcatcagtct	Protospacer
********************************

2. spacer 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to MK820641 (Gordonia phage EnalisNailo, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

3. spacer 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to MK878898 (Gordonia phage Zameen, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

4. spacer 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to MK919483 (Gordonia phage Suscepit, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

5. spacer 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to MK284520 (Gordonia phage Lilas, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

6. spacer 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to MK016492 (Gordonia phage Bialota, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

7. spacer 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to MK820642 (Gordonia phage Polly, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

8. spacer 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to NC_041883 (Gordonia phage Attis, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

9. spacer 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to MK814755 (Gordonia phage Antonio, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

10. spacer 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to MK875796 (Gordonia phage Tayonia, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

11. spacer 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to MK801734 (Gordonia phage LordFarquaad, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

12. spacer 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to MK433274 (Gordonia phage Bradissa, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

13. spacer 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to KU963257 (Gordonia phage Kita, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

14. spacer 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to NC_031251 (Gordonia phage SoilAssassin, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

15. spacer 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to NC_031097 (Gordonia phage Zirinka, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

16. spacer 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP005086 (Sphingobium sp. TKS plasmid pTK2, complete sequence) position: , mismatch: 6, identity: 0.812

tcgccattccgtgaacctgagcgcgttcgcga--	CRISPR spacer
tcgcctttccctgaacctga--gcgatcgtgacc	Protospacer
***** **** *********  *** ***.**  

17. spacer 1.6|555076|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to MN509793 (Pectobacterium phage MA13, partial genome) position: , mismatch: 7, identity: 0.781

tatg-agtgacagccgttttcaccaccgccgtg	CRISPR spacer
-acgcaggcccagccggtttcatcaccgccgtg	Protospacer
 *.* **   ****** *****.**********

18. spacer 5.4|3190113|32|NZ_CP006751|PILER-CR,CRISPRCasFinder,CRT matches to MH616963 (CrAssphage sp. isolate ctbg_1, complete genome) position: , mismatch: 7, identity: 0.781

atttattaaagatgctgacaaaaagaacttaa	CRISPR spacer
aattataaaagatgctgataaaaagattatta	Protospacer
* **** ***********.******* . * *

19. spacer 6.1|4166903|32|NZ_CP006751|CRISPRCasFinder,CRT matches to CP049262 (Cronobacter sakazakii strain CS-09 plasmid pCsaCS09b, complete sequence) position: , mismatch: 7, identity: 0.781

tcaggggactggcgaacaatgtctttcatgat	CRISPR spacer
acgtcgcgctggcgaacaatctctttcatgat	Protospacer
 *.  * .************ ***********

20. spacer 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to JF974294 (Aeromonas phage pIS4-A genomic sequence) position: , mismatch: 7, identity: 0.781

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attacctgaatggcatttgctttatgcctgat	Protospacer
****.************* ****.   * ***

21. spacer 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to NC_021534 (Vibrio phage pYD38-A genomic sequence) position: , mismatch: 7, identity: 0.781

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attacctgaatggcatttgctttatgcctgat	Protospacer
****.************* ****.   * ***

22. spacer 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

----tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cacctcgc----tcgggaacctgggcgcgttcgcga	Protospacer
    ****    .** *******.************

23. spacer 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 7, identity: 0.781

----tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cacctcgc----tcgggaacctgggcgcgttcgcga	Protospacer
    ****    .** *******.************

24. spacer 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to KJ433975 (Mycobacterium phage 40BC, complete genome) position: , mismatch: 7, identity: 0.781

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cccgccg-cccgtgtacccgagcgcgttcgcgc	Protospacer
 .****. .***** ***.************* 

25. spacer 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to KJ433973 (Mycobacterium phage 39HC, complete genome) position: , mismatch: 7, identity: 0.781

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cccgccg-cccgtgtacccgagcgcgttcgcgc	Protospacer
 .****. .***** ***.************* 

26. spacer 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to NC_024145 (Mycobacterium phage Hosp, complete genome) position: , mismatch: 7, identity: 0.781

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cccgccg-cccgtgtacccgagcgcgttcgcgc	Protospacer
 .****. .***** ***.************* 

27. spacer 6.6|4167203|34|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to MK416013 (Klebsiella phage ST16-OXA48phi5.1, complete genome) position: , mismatch: 7, identity: 0.794

ttatccgtgaccgactcaaatacacgctggaacg	CRISPR spacer
ggatccgcgaccgactcaagtacacgctggataa	Protospacer
  *****.***********.***********  .

28. spacer 6.6|4167203|34|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to MK448237 (Klebsiella phage ST974-OXA48phi18.2, complete genome) position: , mismatch: 7, identity: 0.794

ttatccgtgaccgactcaaatacacgctggaacg	CRISPR spacer
ggatccgcgaccgactcaagtacacgctggataa	Protospacer
  *****.***********.***********  .

29. spacer 6.7|4167265|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to NC_015561 (Hoyosella subflava DQS3-9A1 plasmid pAS9A-2, complete sequence) position: , mismatch: 7, identity: 0.781

tcaccaatgagggcgaccatgccgaggacttg	CRISPR spacer
tcggccatgagggcgaacatgccgaagacgag	Protospacer
**. * ********** ********.***  *

30. spacer 5.4|3190113|32|NZ_CP006751|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010358 (Acinetobacter johnsonii XBB1 plasmid pXBB1-8, complete sequence) position: , mismatch: 8, identity: 0.75

atttattaaagatgctgacaaaaagaacttaa	CRISPR spacer
atttattaatgatgctgacgaaaatatggcac	Protospacer
********* *********.**** *   .* 

31. spacer 5.4|3190113|32|NZ_CP006751|PILER-CR,CRISPRCasFinder,CRT matches to NC_019694 (Oscillatoria acuminata PCC 6304 plasmid pOSCIL6304.02, complete sequence) position: , mismatch: 8, identity: 0.75

atttattaaagatgctgacaaaaagaacttaa	CRISPR spacer
atttattaaagaagctgccaaaagagcatcaa	Protospacer
************ **** *****...  *.**

32. spacer 1.3|554895|33|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040366 (Bacillus flexus isolate 1-2-1 plasmid punnamed3, complete sequence) position: , mismatch: 9, identity: 0.727

agcaaaaatcttaattacatctgatgatttcgg	CRISPR spacer
ggaaaaaaacttaattacatctgataatccatt	Protospacer
.* ***** ****************.**..   

33. spacer 5.4|3190113|32|NZ_CP006751|PILER-CR,CRISPRCasFinder,CRT matches to MT774386 (CrAssphage cr110_1, complete genome) position: , mismatch: 9, identity: 0.719

atttattaaagatgctgacaaaaagaacttaa	CRISPR spacer
tgctattgaagatgctgataaaaagaaacttg	Protospacer
  .****.**********.******** .* .

34. spacer 5.4|3190113|32|NZ_CP006751|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028934 (Campylobacter jejuni strain FORC_083 plasmid pFORC_083_2, complete sequence) position: , mismatch: 9, identity: 0.719

atttattaaagatgctgacaaaaagaacttaa	CRISPR spacer
gcacattacagacgctgacaaaaagaaagtta	Protospacer
.. .**** ***.**************  * *

35. spacer 6.2|4166963|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031943 (Nostoc sphaeroides strain Kutzing En plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.719

gaaaaggtaagatgggcaagcttctagtagtt	CRISPR spacer
ttatgagaaagatgggcaagcttttagtggta	Protospacer
  * ..* ***************.****.** 

36. spacer 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to MF679145 (Escherichia coli plasmid pBJ114-96, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

37. spacer 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

38. spacer 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021340 (Escherichia coli strain 95NR1 plasmid p95NR1A, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

39. spacer 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021336 (Escherichia coli strain 95JB1 plasmid p95JB1A, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

40. spacer 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040920 (Escherichia coli strain FC853_EC plasmid p853EC1, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

41. spacer 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024832 (Escherichia coli strain CREC-532 plasmid pCREC-532_2, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

42. spacer 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024817 (Escherichia coli strain CREC-629 plasmid pCREC-629_2, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

43. spacer 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029117 (Escherichia coli strain AR435 plasmid unnamed4) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

44. spacer 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029117 (Escherichia coli strain AR435 plasmid unnamed4) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat-----	CRISPR spacer
attatctgattggcagtttctttaac-----tgttta	Protospacer
********* ***** *******..*     *     

45. spacer 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023961 (Escherichia coli strain FDAARGOS_448 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

46. spacer 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to AP023222 (Escherichia coli M505 plasmid pM505-b DNA, complete genome) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

47. spacer 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to AP023233 (Escherichia coli YJ4 plasmid pYJ4-b DNA, complete genome) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

48. spacer 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019075 (Escherichia coli strain CRE1493 plasmid p1493-4, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

49. spacer 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015837 (Escherichia coli strain MS6198 plasmid pMS6198C, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

50. spacer 6.3|4167023|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011063 (Escherichia coli str. Sanji plasmid pSJ_98, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

51. spacer 6.4|4167083|32|NZ_CP006751|CRISPRCasFinder,CRT,PILER-CR matches to NZ_JX627581 (Methylobacterium oryzae CBMB20 plasmid pMOC2, complete sequence) position: , mismatch: 10, identity: 0.688

tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
ctaacgagccgtgaacctcagcgcattcgcgt	Protospacer
... *.  ********** *****.****** 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 241764 : 312346 59 Vibrio_phage(16.67%) tail,coat,plate,transposase NA
DBSCAN-SWA_2 315524 : 325554 10 Escherichia_phage(42.86%) NA NA
DBSCAN-SWA_3 348647 : 405153 46 Enterobacteria_phage(16.67%) transposase,tRNA,holin,protease NA
DBSCAN-SWA_4 475761 : 484903 11 Escherichia_phage(28.57%) transposase NA
DBSCAN-SWA_5 1921976 : 2001346 58 Yellowstone_lake_phycodnavirus(18.18%) tRNA,plate,transposase NA
DBSCAN-SWA_6 2179801 : 2259473 54 Escherichia_phage(25.0%) tRNA,plate,transposase NA
DBSCAN-SWA_7 2350317 : 2412641 55 uncultured_Mediterranean_phage(18.18%) transposase,tail,protease NA
DBSCAN-SWA_8 2647532 : 2728516 59 Staphylococcus_phage(22.22%) transposase,tRNA,plate,protease NA
DBSCAN-SWA_9 3036341 : 3104029 53 Escherichia_phage(28.57%) protease,plate,transposase NA
DBSCAN-SWA_10 3600463 : 3693278 93 Escherichia_phage(12.5%) tRNA,integrase,tail,terminase,transposase,lysis attL 3611010:3611040|attR 3650111:3650141
DBSCAN-SWA_11 3964302 : 4023123 52 Tupanvirus(18.18%) protease,tRNA,coat,transposase NA
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP006751.1|WP_002214494.1|3654448_3654805_+|hypothetical-protein 3654448_3654805_+ 118 aa aa NA NA NA 3600463-3693278 yes
2. NZ_CP006749
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1801 : 61019 60 Salmonella_phage(70.59%) transposase,tail,terminase NA
DBSCAN-SWA_2 114789 : 133893 21 Salmonella_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage