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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP012068 Eubacterium sulci ATCC 35585 chromosome, complete genome 5 crisprs csa3,cas3 1 1 130 1

Results visualization

1. NZ_CP012068
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012068_1 88781-88877 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012068_2 225089-225167 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012068_3 833728-833930 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012068_4 1433590-1433691 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012068_5 1564336-1564443 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP012068_5 5.1|1564361|58|NZ_CP012068|CRISPRCasFinder 1564361-1564418 58 NZ_CP012068.1 225114-225171 0 1.0

1. spacer 5.1|1564361|58|NZ_CP012068|CRISPRCasFinder matches to position: 225114-225171, mismatch: 0, identity: 1.0

tactctctaaattatcgggttggtaaaaacagaccgttttttctttgaggttggtgga	CRISPR spacer
tactctctaaattatcgggttggtaaaaacagaccgttttttctttgaggttggtgga	Protospacer
**********************************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP012068_2 2.1|225114|29|NZ_CP012068|CRISPRCasFinder 225114-225142 29 NC_018688 Bacillus thuringiensis MC28 plasmid pMC319, complete sequence 122978-123006 6 0.793
NZ_CP012068_2 2.1|225114|29|NZ_CP012068|CRISPRCasFinder 225114-225142 29 NZ_CP053906 Hymenobacter sp. BRD67 plasmid unnamed2, complete sequence 51828-51856 7 0.759

1. spacer 2.1|225114|29|NZ_CP012068|CRISPRCasFinder matches to NC_018688 (Bacillus thuringiensis MC28 plasmid pMC319, complete sequence) position: , mismatch: 6, identity: 0.793

tccaccaacctcaaagaaaaaacggtctg	CRISPR spacer
tacaccaacctaaaagaaaaaaccaactc	Protospacer
* ********* *********** . ** 

2. spacer 2.1|225114|29|NZ_CP012068|CRISPRCasFinder matches to NZ_CP053906 (Hymenobacter sp. BRD67 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.759

tccaccaacctcaaagaaaaaacggtctg	CRISPR spacer
cgcaccaacctcaaagaagaaaaggacat	Protospacer
. ****************.*** ** *  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 9079 7 Catovirus(25.0%) tRNA NA
DBSCAN-SWA_2 27537 : 32125 4 Megavirus(50.0%) tRNA,transposase NA
DBSCAN-SWA_3 38782 : 40534 3 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_4 46723 : 47443 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_5 63314 : 64052 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_6 70380 : 72055 2 Organic_Lake_phycodnavirus(50.0%) NA NA
DBSCAN-SWA_7 75979 : 88045 13 Bacillus_phage(16.67%) NA NA
DBSCAN-SWA_8 95656 : 97403 2 Organic_Lake_phycodnavirus(50.0%) NA NA
DBSCAN-SWA_9 102089 : 102950 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_10 106847 : 117431 8 Planktothrix_phage(40.0%) NA NA
DBSCAN-SWA_11 129105 : 140590 11 Bacillus_virus(33.33%) NA NA
DBSCAN-SWA_12 146399 : 151599 5 Enterococcus_phage(33.33%) NA NA
DBSCAN-SWA_13 164257 : 165712 2 Geobacillus_virus(50.0%) NA NA
DBSCAN-SWA_14 181575 : 186291 5 Pandoravirus(50.0%) NA NA
DBSCAN-SWA_15 191696 : 195337 3 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_16 214104 : 227064 12 Streptococcus_phage(40.0%) tRNA,transposase NA
DBSCAN-SWA_17 235104 : 243654 5 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_18 247723 : 253184 7 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_19 265393 : 267333 2 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_20 273811 : 280152 5 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_21 304899 : 312148 4 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_22 325362 : 327131 2 Pandoravirus(50.0%) NA NA
DBSCAN-SWA_23 335688 : 337359 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_24 341816 : 342767 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_25 351171 : 354730 5 Pneumococcus_phage(50.0%) NA NA
DBSCAN-SWA_26 359767 : 363538 5 Streptococcus_phage(66.67%) NA NA
DBSCAN-SWA_27 369137 : 372719 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_28 384073 : 397182 13 Clostridium_phage(28.57%) NA NA
DBSCAN-SWA_29 412520 : 412778 1 Diadromus_pulchellus_ascovirus(100.0%) NA NA
DBSCAN-SWA_30 426124 : 434287 5 Klosneuvirus(33.33%) tRNA NA
DBSCAN-SWA_31 441057 : 442272 1 Virus_Rctr41k(100.0%) NA NA
DBSCAN-SWA_32 458020 : 464573 5 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_33 472899 : 474738 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_34 486916 : 498047 11 Streptococcus_phage(40.0%) transposase NA
DBSCAN-SWA_35 502314 : 505506 3 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_36 509242 : 514221 5 Bacillus_virus(33.33%) NA NA
DBSCAN-SWA_37 517927 : 519058 1 Escherichia_coli_O157_typing_phage(100.0%) NA NA
DBSCAN-SWA_38 525878 : 527690 1 Moumouvirus(100.0%) NA NA
DBSCAN-SWA_39 531593 : 534319 2 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_40 538749 : 539868 1 Bathycoccus_sp._RCC1105_virus(100.0%) NA NA
DBSCAN-SWA_41 551213 : 553103 1 uncultured_phage(100.0%) NA NA
DBSCAN-SWA_42 556275 : 557919 1 Escherichia_phage(100.0%) tRNA NA
DBSCAN-SWA_43 567895 : 572717 4 Catovirus(50.0%) transposase NA
DBSCAN-SWA_44 583889 : 588078 4 Cafeteria_roenbergensis_virus(50.0%) NA NA
DBSCAN-SWA_45 592531 : 593839 1 Geobacillus_virus(100.0%) NA NA
DBSCAN-SWA_46 597499 : 598387 1 Bacillus_phage(100.0%) transposase NA
DBSCAN-SWA_47 607158 : 611813 2 Streptomyces_phage(50.0%) NA NA
DBSCAN-SWA_48 615161 : 620940 6 Streptococcus_phage(40.0%) NA NA
DBSCAN-SWA_49 626048 : 627866 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_50 632518 : 635591 2 Megavirus(50.0%) NA NA
DBSCAN-SWA_51 645377 : 646115 1 Prochlorococcus_phage(100.0%) NA NA
DBSCAN-SWA_52 650359 : 655022 3 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_53 667957 : 678443 12 Bacillus_phage(20.0%) tRNA,transposase NA
DBSCAN-SWA_54 685345 : 687126 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_55 690382 : 694766 4 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_56 713422 : 718659 3 Erysipelothrix_phage(50.0%) NA NA
DBSCAN-SWA_57 724905 : 727833 1 Salmonella_phage(100.0%) NA NA
DBSCAN-SWA_58 732934 : 733882 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_59 737240 : 751356 11 Klosneuvirus(16.67%) tRNA NA
DBSCAN-SWA_60 758085 : 758478 1 Paenibacillus_phage(100.0%) NA NA
DBSCAN-SWA_61 764680 : 766293 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_62 775519 : 790791 13 Planktothrix_phage(33.33%) NA NA
DBSCAN-SWA_63 793818 : 796935 1 Orpheovirus(100.0%) tRNA NA
DBSCAN-SWA_64 888497 : 889406 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_65 895503 : 901192 5 Acanthamoeba_castellanii_mimivirus(25.0%) NA NA
DBSCAN-SWA_66 912470 : 914938 2 Pseudomonas_phage(50.0%) NA NA
DBSCAN-SWA_67 921448 : 938907 14 Synechococcus_phage(20.0%) tRNA NA
DBSCAN-SWA_68 941945 : 948585 4 Clostridioides_phage(33.33%) tRNA,integrase attL 936642:936656|attR 950979:950993
DBSCAN-SWA_69 952544 : 962246 10 Indivirus(20.0%) NA NA
DBSCAN-SWA_70 965986 : 979468 10 Staphylococcus_phage(20.0%) tRNA NA
DBSCAN-SWA_71 982631 : 994130 5 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_72 1007565 : 1012847 4 Geobacillus_phage(33.33%) NA NA
DBSCAN-SWA_73 1018608 : 1022220 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_74 1048563 : 1049637 1 Canarypox_virus(100.0%) NA NA
DBSCAN-SWA_75 1058301 : 1066794 7 Catovirus(66.67%) NA NA
DBSCAN-SWA_76 1080601 : 1083147 3 Organic_Lake_phycodnavirus(50.0%) NA NA
DBSCAN-SWA_77 1096017 : 1104898 11 Bacillus_virus(40.0%) tRNA NA
DBSCAN-SWA_78 1119462 : 1119924 1 Sulfolobus_monocaudavirus(100.0%) transposase NA
DBSCAN-SWA_79 1127239 : 1143735 15 Cedratvirus(11.11%) tRNA NA
DBSCAN-SWA_80 1157490 : 1157769 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_81 1165598 : 1166567 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_82 1180412 : 1182083 1 Clostridium_botulinum_C_phage(100.0%) NA NA
DBSCAN-SWA_83 1186990 : 1192502 5 Hokovirus(25.0%) protease NA
DBSCAN-SWA_84 1205065 : 1206205 1 Faustovirus(100.0%) NA NA
DBSCAN-SWA_85 1216506 : 1217145 1 Wolbachia_phage(100.0%) NA NA
DBSCAN-SWA_86 1220301 : 1223713 5 Methanothermobacter_phage(50.0%) NA NA
DBSCAN-SWA_87 1233303 : 1236081 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_88 1240136 : 1243304 1 Saccharomonospora_phage(100.0%) NA NA
DBSCAN-SWA_89 1247365 : 1250429 4 Flavobacterium_phage(50.0%) NA NA
DBSCAN-SWA_90 1261805 : 1265304 4 Staphylococcus_phage(75.0%) NA NA
DBSCAN-SWA_91 1287923 : 1291410 3 Abalone_herpesvirus(50.0%) NA NA
DBSCAN-SWA_92 1298330 : 1300463 2 Cafeteriavirus(50.0%) NA NA
DBSCAN-SWA_93 1306323 : 1309343 3 uncultured_phage(50.0%) NA NA
DBSCAN-SWA_94 1315511 : 1318043 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_95 1324126 : 1327253 2 Hokovirus(50.0%) NA NA
DBSCAN-SWA_96 1331454 : 1334995 3 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_97 1340002 : 1348250 9 uncultured_virus(40.0%) tRNA NA
DBSCAN-SWA_98 1355734 : 1361666 4 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_99 1369966 : 1381395 8 Bacillus_phage(50.0%) tRNA NA
DBSCAN-SWA_100 1387833 : 1394029 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_101 1415064 : 1431985 13 Tupanvirus(12.5%) integrase attL 1422326:1422352|attR 1423318:1423344
DBSCAN-SWA_102 1439657 : 1440122 1 Sulfolobus_monocaudavirus(100.0%) transposase NA
DBSCAN-SWA_103 1446491 : 1449233 2 Erysipelothrix_phage(100.0%) NA NA
DBSCAN-SWA_104 1465100 : 1466384 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_105 1472234 : 1474632 2 Acidithiobacillus_phage(50.0%) NA NA
DBSCAN-SWA_106 1494779 : 1498765 2 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_107 1504100 : 1505888 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_108 1510396 : 1511698 1 Acanthocystis_turfacea_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_109 1515333 : 1516230 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_110 1520026 : 1520488 1 Sulfolobus_monocaudavirus(100.0%) transposase NA
DBSCAN-SWA_111 1523989 : 1525357 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_112 1537326 : 1538427 1 Anomala_cuprea_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_113 1541874 : 1543658 2 Klosneuvirus(50.0%) NA NA
DBSCAN-SWA_114 1551032 : 1556084 4 Enterococcus_phage(50.0%) NA NA
DBSCAN-SWA_115 1564505 : 1565846 1 Streptococcus_phage(100.0%) transposase NA
DBSCAN-SWA_116 1569471 : 1573306 6 Paenibacillus_phage(50.0%) NA NA
DBSCAN-SWA_117 1578940 : 1581190 1 Phage_TP(100.0%) NA NA
DBSCAN-SWA_118 1587613 : 1604894 12 uncultured_Mediterranean_phage(28.57%) NA NA
DBSCAN-SWA_119 1615399 : 1624160 10 Streptococcus_phage(25.0%) tRNA NA
DBSCAN-SWA_120 1628554 : 1630685 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_121 1645939 : 1646689 1 Cafeteria_roenbergensis_virus(100.0%) NA NA
DBSCAN-SWA_122 1651849 : 1661554 11 Planktothrix_phage(40.0%) tRNA NA
DBSCAN-SWA_123 1668194 : 1671215 2 Clostridium_phage(50.0%) NA NA
DBSCAN-SWA_124 1674487 : 1675759 1 uncultured_Mediterranean_phage(100.0%) tRNA NA
DBSCAN-SWA_125 1687595 : 1698584 11 Fowlpox_virus(25.0%) NA NA
DBSCAN-SWA_126 1704537 : 1708425 4 Pandoravirus(50.0%) tRNA NA
DBSCAN-SWA_127 1715446 : 1715833 1 Listeria_phage(100.0%) NA NA
DBSCAN-SWA_128 1719023 : 1720667 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_129 1729214 : 1730635 1 Bacillus_phage(100.0%) transposase NA
DBSCAN-SWA_130 1733944 : 1734760 1 Staphylococcus_phage(100.0%) NA NA
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP012068.1|WP_034813239.1|218124_218379_-|TIGR03905-family-TSCPD-domain-containing-protein 218124_218379_- 84 aa aa NA NA NA 214104-227064 yes