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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP012196 Campylobacter gracilis strain ATCC 33236 chromosome, complete genome 8 crisprs cas1,cas2,csx1,csx20,WYL,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csa3,cas3,cas4,cas5,cas7,cas8b1,DEDDh 0 1 3 0

Results visualization

1. NZ_CP012196
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012196_1 71181-74341 Unclear NA
41 spacers
cas2,cas1,cas6,csx1,csx20,WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012196_2 504385-504541 TypeIII NA
2 spacers
csm5gr7,csm4gr5,csm3gr7,csm2gr11

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012196_3 1361763-1361982 Unclear NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012196_4 1363496-1363846 Unclear NA
5 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012196_5 1377542-1377704 TypeI-B NA
2 spacers
cas1,cas2,cas4,cas3,cas5,cas7,cas8b1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012196_6 1611309-1611465 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012196_7 1952547-1952632 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012196_8 2011379-2011535 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP012196_3 3.5|1361918|34|NZ_CP012196|PILER-CR,CRISPRCasFinder 1361918-1361951 34 NZ_CP018230 Rhizobium leguminosarum strain Vaf-108 plasmid unnamed2, complete sequence 126915-126948 9 0.735
NZ_CP012196_3 3.5|1361918|34|NZ_CP012196|PILER-CR,CRISPRCasFinder 1361918-1361951 34 NC_012858 Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132502, complete sequence 160089-160122 9 0.735
NZ_CP012196_3 3.5|1361918|34|NZ_CP012196|PILER-CR,CRISPRCasFinder 1361918-1361951 34 NZ_CP054023 Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence 31513-31546 9 0.735
NZ_CP012196_3 3.5|1361918|34|NZ_CP012196|PILER-CR,CRISPRCasFinder 1361918-1361951 34 NZ_CP054033 Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence 184960-184993 9 0.735

1. spacer 3.5|1361918|34|NZ_CP012196|PILER-CR,CRISPRCasFinder matches to NZ_CP018230 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.735

catcgagcagcagctctttcgtatcccacttttg	CRISPR spacer
cgtcgagcagcagcactttcggatccaatgccag	Protospacer
*.************ ****** **** *. .. *

2. spacer 3.5|1361918|34|NZ_CP012196|PILER-CR,CRISPRCasFinder matches to NC_012858 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132502, complete sequence) position: , mismatch: 9, identity: 0.735

catcgagcagcagctctttcgtatcccacttttg	CRISPR spacer
cgtcgagcagcagcactttcggatccagcgccag	Protospacer
*.************ ****** **** .* .. *

3. spacer 3.5|1361918|34|NZ_CP012196|PILER-CR,CRISPRCasFinder matches to NZ_CP054023 (Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence) position: , mismatch: 9, identity: 0.735

catcgagcagcagctctttcgtatcccacttttg	CRISPR spacer
cgtcgagcagcagcactttcggatccaatgccag	Protospacer
*.************ ****** **** *. .. *

4. spacer 3.5|1361918|34|NZ_CP012196|PILER-CR,CRISPRCasFinder matches to NZ_CP054033 (Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence) position: , mismatch: 9, identity: 0.735

catcgagcagcagctctttcgtatcccacttttg	CRISPR spacer
cgtcgagcagcagcactttcggatccaatgccag	Protospacer
*.************ ****** **** *. .. *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 214865 : 224373 18 Clostridium_phage(14.29%) integrase attL 205052:205066|attR 226077:226091
DBSCAN-SWA_2 562190 : 631788 80 Campylobacter_phage(30.0%) plate,portal,tRNA,protease,tail,capsid,transposase NA
DBSCAN-SWA_3 1983195 : 1993198 9 uncultured_virus(14.29%) tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage