Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP012190 Lacticaseibacillus paracasei strain CAUH35 plasmid unnamed3, complete sequence 0 crisprs NA 0 0 7 0
NZ_CP012191 Lacticaseibacillus paracasei strain CAUH35 plasmid unnamed4, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP012189 Lacticaseibacillus paracasei strain CAUH35 plasmid unnamed2, complete sequence 1 crisprs NA 0 1 5 0
NZ_CP012187 Lacticaseibacillus paracasei strain CAUH35 chromosome, complete genome 0 crisprs DinG,WYL,DEDDh,csa3,cas3 0 0 10 0
NZ_CP012188 Lacticaseibacillus paracasei strain CAUH35 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 1 0

Results visualization

1. NZ_CP012190
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 1100 1 Lactobacillus_phage(100.0%) transposase NA
DBSCAN-SWA_2 4794 : 5478 1 Staphylococcus_phage(100.0%) transposase NA
DBSCAN-SWA_3 10950 : 11898 1 Salmonella_phage(100.0%) NA NA
DBSCAN-SWA_4 18426 : 20233 2 Clostridium_phage(50.0%) NA NA
DBSCAN-SWA_5 26125 : 26377 1 Lactobacillus_phage(100.0%) transposase NA
DBSCAN-SWA_6 35196 : 40347 5 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_7 50042 : 50267 1 Staphylococcus_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP012189
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012189_1 18299-18392 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP012189_1 1.1|18322|48|NZ_CP012189|CRISPRCasFinder 18322-18369 48 NZ_CP044366 Lactobacillus paracasei strain TD 062 plasmid unnamed5, complete sequence 6480-6527 0 1.0
NZ_CP012189_1 1.1|18322|48|NZ_CP012189|CRISPRCasFinder 18322-18369 48 NZ_CP017266 Lactobacillus paracasei strain FAM18149 plasmid pFAM18149.25, complete sequence 28722-28769 0 1.0
NZ_CP012189_1 1.1|18322|48|NZ_CP012189|CRISPRCasFinder 18322-18369 48 NZ_CP012189 Lactobacillus paracasei strain CAUH35 plasmid unnamed2, complete sequence 18322-18369 0 1.0
NZ_CP012189_1 1.1|18322|48|NZ_CP012189|CRISPRCasFinder 18322-18369 48 NZ_CP014986 Lactobacillus paracasei strain IIA plasmid unnamed1, complete sequence 9096-9143 1 0.979
NZ_CP012189_1 1.1|18322|48|NZ_CP012189|CRISPRCasFinder 18322-18369 48 NZ_CP031786 Lactobacillus paracasei strain 10266 plasmid pLP10266, complete sequence 17784-17831 1 0.979
NZ_CP012189_1 1.1|18322|48|NZ_CP012189|CRISPRCasFinder 18322-18369 48 NZ_CP039709 Lactobacillus paracasei strain Lp02 plasmid pLp02-2, complete sequence 42802-42849 1 0.979

1. spacer 1.1|18322|48|NZ_CP012189|CRISPRCasFinder matches to NZ_CP044366 (Lactobacillus paracasei strain TD 062 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

acacatttgtacatttacatatatgtaaatgtgtaaaaatatccgcat	CRISPR spacer
acacatttgtacatttacatatatgtaaatgtgtaaaaatatccgcat	Protospacer
************************************************

2. spacer 1.1|18322|48|NZ_CP012189|CRISPRCasFinder matches to NZ_CP017266 (Lactobacillus paracasei strain FAM18149 plasmid pFAM18149.25, complete sequence) position: , mismatch: 0, identity: 1.0

acacatttgtacatttacatatatgtaaatgtgtaaaaatatccgcat	CRISPR spacer
acacatttgtacatttacatatatgtaaatgtgtaaaaatatccgcat	Protospacer
************************************************

3. spacer 1.1|18322|48|NZ_CP012189|CRISPRCasFinder matches to NZ_CP012189 (Lactobacillus paracasei strain CAUH35 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

acacatttgtacatttacatatatgtaaatgtgtaaaaatatccgcat	CRISPR spacer
acacatttgtacatttacatatatgtaaatgtgtaaaaatatccgcat	Protospacer
************************************************

4. spacer 1.1|18322|48|NZ_CP012189|CRISPRCasFinder matches to NZ_CP014986 (Lactobacillus paracasei strain IIA plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.979

acacatttgtacatttacatatatgtaaatgtgtaaaaatatccgcat	CRISPR spacer
acacatttgtacatttacatatatgtaaatgtgtaaaaatatccgcag	Protospacer
*********************************************** 

5. spacer 1.1|18322|48|NZ_CP012189|CRISPRCasFinder matches to NZ_CP031786 (Lactobacillus paracasei strain 10266 plasmid pLP10266, complete sequence) position: , mismatch: 1, identity: 0.979

acacatttgtacatttacatatatgtaaatgtgtaaaaatatccgcat	CRISPR spacer
acacatttgtacatttacatatatgtaaatgtgtaaaaatatccgcag	Protospacer
*********************************************** 

6. spacer 1.1|18322|48|NZ_CP012189|CRISPRCasFinder matches to NZ_CP039709 (Lactobacillus paracasei strain Lp02 plasmid pLp02-2, complete sequence) position: , mismatch: 1, identity: 0.979

acacatttgtacatttacatatatgtaaatgtgtaaaaatatccgcat	CRISPR spacer
acacatttgtacatttacatatatgtaaatgtgtaaaaatatccgcag	Protospacer
*********************************************** 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 6697 5 Lactococcus_phage(50.0%) transposase NA
DBSCAN-SWA_2 18566 : 19448 1 Enterococcus_phage(100.0%) NA NA
DBSCAN-SWA_3 22889 : 26860 4 unidentified_phage(33.33%) transposase NA
DBSCAN-SWA_4 33511 : 37502 4 Acinetobacter_phage(33.33%) transposase NA
DBSCAN-SWA_5 45065 : 45749 1 Staphylococcus_phage(100.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP012187
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 15908 : 43792 27 unidentified_phage(20.0%) bacteriocin,protease,transposase,holin NA
DBSCAN-SWA_2 64326 : 131999 52 Faecalibacterium_phage(21.43%) transposase NA
DBSCAN-SWA_3 299552 : 336777 31 unidentified_phage(50.0%) transposase NA
DBSCAN-SWA_4 383155 : 456569 45 Staphylococcus_phage(23.08%) transposase,holin NA
DBSCAN-SWA_5 465935 : 510125 62 Lactobacillus_phage(86.0%) capsid,integrase,holin,head,portal,tail,protease,terminase attL 467850:467868|attR 510263:510281
DBSCAN-SWA_6 909771 : 1029374 117 Staphylococcus_phage(12.9%) transposase,tRNA,integrase,head,portal,tail,protease,terminase attL 921164:921180|attR 960165:960181
DBSCAN-SWA_7 1743640 : 1814879 79 Lactobacillus_phage(81.82%) capsid,tRNA,integrase,holin,head,portal,terminase,tail,protease,transposase attL 1748415:1748439|attR 1820220:1820244
DBSCAN-SWA_8 1858193 : 1935173 55 unidentified_phage(18.18%) protease,transposase NA
DBSCAN-SWA_9 2167782 : 2246811 95 Lactobacillus_phage(76.36%) capsid,tRNA,integrase,holin,head,portal,tail,protease,terminase attL 2207651:2207666|attR 2252488:2252503
DBSCAN-SWA_10 2285190 : 2351783 59 Bacillus_phage(27.27%) bacteriocin,protease,tRNA,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. NZ_CP012188
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 17681 : 50645 35 Clostridium_phage(20.0%) transposase,holin NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage