CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP010319	Streptococcus agalactiae strain GBS85147 chromosome, complete genome	2 crisprs	cas3,DinG,cas9,cas1,cas2,csn2,csm6,RT,DEDDh	2	16	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010319_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010319_1

856653-857347

TypeII

II-A

Consensus_repeat	Method
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCTTT	PILER-CR
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CRISPRCasFinder
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CRT
AGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	PILER-CR

10 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_CP010319_1

>merge|NZ_CP010319|1|856653-857347|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACGTTTTTGGGGCAAAATCAAGGCGGTGCTAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCCCTCGTGCGCCCACAAACCGAACTCATTCGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCTTTCCATCCATACGAACCCCAGTTATAGTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAACCACTTGATGCTGTATCTCTCATAAAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATTGTGATACAGATAGTTTATACCTAAAAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGGTTTAATACTGTAAATTGTTCAATATCAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCCCTCAATTTATTGACATTATTAATATAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAAAAGAGCCAGAAACTCAATCAGAAGAAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGGTGTTGGCTGTTCTGGGATGACTACGTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTTAATATCGTCTATATAGATTCCTGGACGGTTTTAGAGCTGCGCGGTTATTATGCTATGCTAGGA

>NZ_CP010319|1|1|856653-856824|PILER-CR
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACGTTT	TTGGGGCAAAATCAAGGCGGTGCTAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCCCT	CGTGCGCCCACAAACCGAACTCATTCGTT
TTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCTTTCCATCCATACGAACCCCAGTTATAGTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAACCACTTGATGCTGTATCTCTCATAAAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ATTGTGATACAGATAGTTTATACCTAAAA
AGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGGTTTAATACTGTAAATTGTTCAATATC
AGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CCCTCAATTTATTGACATTATTAATATA
AGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAAAAGAGCCAGAAACTCAATCAGAAGAA
AGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGGTGTTGGCTGTTCTGGGATGACTACGT


>NZ_CP010319|1|1|856653-857281|CRISPRCasFinder
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	GTTTTTGGGGCAAAATCAAGGCGGTGCTAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CCCTCGTGCGCCCACAAACCGAACTCATTC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CTTTCCATCCATACGAACCCCAGTTATAGT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAACCACTTGATGCTGTATCTCTCATAAAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ATTGTGATACAGATAGTTTATACCTAAAAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGGTTTAATACTGTAAATTGTTCAATATCA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CCCTCAATTTATTGACATTATTAATATAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAAAAGAGCCAGAAACTCAATCAGAAGAAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGGTGTTGGCTGTTCTGGGATGACTACGTT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC

>NZ_CP010319|1|1|856653-857347|CRT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	GTTTTTGGGGCAAAATCAAGGCGGTGCTAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CCCTCGTGCGCCCACAAACCGAACTCATTC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CTTTCCATCCATACGAACCCCAGTTATAGT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAACCACTTGATGCTGTATCTCTCATAAAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ATTGTGATACAGATAGTTTATACCTAAAAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGGTTTAATACTGTAAATTGTTCAATATCA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CCCTCAATTTATTGACATTATTAATATAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAAAAGAGCCAGAAACTCAATCAGAAGAAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGGTGTTGGCTGTTCTGGGATGACTACGTT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTTAATATCGTCTATATAGATTCCTGGACG
GTTTTAGAGCTGCGCGGTTATTATGCTATGCTAGGA

>NZ_CP010319|1|2|856916-857281|PILER-CR
	TTGGGGCAAAATCAAGGCGGTGCTAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCCCT	CGTGCGCCCACAAACCGAACTCATTCGTT
TTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCTTTCCATCCATACGAACCCCAGTTATAGTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAACCACTTGATGCTGTATCTCTCATAAAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ATTGTGATACAGATAGTTTATACCTAAAA
AGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGGTTTAATACTGTAAATTGTTCAATATC
AGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CCCTCAATTTATTGACATTATTAATATA
AGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAAAAGAGCCAGAAACTCAATCAGAAGAA
AGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGGTGTTGGCTGTTCTGGGATGACTACGT
TGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010319.1\|WP_000122194.1\|855558_855900_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP010319.1\|WP_017648376.1\|850578_854691_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|273840
NZ_CP010319.1\|WP_000590706.1\|855886_856552_+\|type-II-A-CRISPR-associated-protein-Csn2	csn2	pfam09711_csn2_CAS-II-A	gnl\|CDD\|213408
NZ_CP010319.1\|WP_000146569.1\|868983_869622_-\|CatB-related-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100040
NZ_CP010319.1\|WP_000929493.1\|854692_855562_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP010319.1\|WP_000621138.1\|863918_864383_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP010319.1\|WP_000914667.1\|847010_848141_+\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
NZ_CP010319.1\|WP_000653357.1\|849642_850299_+\|TIGR01906-family-membrane-protein	unknown	unknown	gnl\|CDD\|226884
NZ_CP010319.1\|WP_000065324.1\|867761_868865_+\|DUF2974-domain-containing-protein	unknown	unknown	gnl\|CDD\|371412
NZ_CP010319.1\|WP_025194971.1\|863250_863910_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224336
NZ_CP010319.1\|WP_001019133.1\|858439_860272_+\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NZ_CP010319.1\|WP_000438313.1\|857887_858304_+\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
NZ_CP010319.1\|WP_000678290.1\|860517_863151_+\|pneumococcal-type-histidine-triad-protein	unknown	unknown	gnl\|CDD\|380193
NZ_CP010319.1\|WP_001241816.1\|846537_846918_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131381
NZ_CP010319.1\|WP_000665410.1\|864382_864817_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|234692
NZ_CP010319.1\|WP_001056394.1\|870307_870919_+\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
NZ_CP010319.1\|WP_000159230.1\|846141_846513_+\|YbgA-family-protein	unknown	unknown	gnl\|CDD\|377982
NZ_CP010319.1\|WP_000323544.1\|848882_849653_+\|TIGR01457-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319832
NZ_CP010319.1\|WP_000523796.1\|848144_848882_+\|acyl-ACP-thioesterase	unknown	unknown	gnl\|CDD\|366738
NZ_CP010319.1\|WP_000168908.1\|864969_867762_+\|cation-transporting-P-type-ATPase	unknown	unknown	gnl\|CDD\|223550

Protein	Function_ID	Function_description	E-value
NZ_CP010319.1\|WP_000122194.1\|855558_855900_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.38084e-52
NZ_CP010319.1\|WP_017648376.1\|850578_854691_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|273840	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.	0
NZ_CP010319.1\|WP_000590706.1\|855886_856552_+\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.61399e-122
NZ_CP010319.1\|WP_000146569.1\|868983_869622_-\|CatB-related-O-acetyltransferase	gnl\|CDD\|100040	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.	3.59126e-72
NZ_CP010319.1\|WP_000929493.1\|854692_855562_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	1.68617e-138
NZ_CP010319.1\|WP_000621138.1\|863918_864383_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.77562e-18
NZ_CP010319.1\|WP_000914667.1\|847010_848141_+\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
NZ_CP010319.1\|WP_000653357.1\|849642_850299_+\|TIGR01906-family-membrane-protein	gnl\|CDD\|226884	COG4478, COG4478, Predicted membrane protein [Function unknown].	9.75792e-52
NZ_CP010319.1\|WP_000065324.1\|867761_868865_+\|DUF2974-domain-containing-protein	gnl\|CDD\|371412	pfam11187, DUF2974, Protein of unknown function (DUF2974). This bacterial family of proteins has no known function.	2.245e-105
NZ_CP010319.1\|WP_025194971.1\|863250_863910_+\|HD-domain-containing-protein	gnl\|CDD\|224336	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only].	7.08573e-33
NZ_CP010319.1\|WP_001019133.1\|858439_860272_+\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_CP010319.1\|WP_000438313.1\|857887_858304_+\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	6.25805e-79
NZ_CP010319.1\|WP_000678290.1\|860517_863151_+\|pneumococcal-type-histidine-triad-protein	gnl\|CDD\|380193	NF033189, internalin_A, class 1 internalin InlA. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface or secreted proteins with an N-terminal signal peptide, leucine-rich repeats, and usually a C-terminal LPXTG processing and cell surface anchoring site. See PMID:17764999 for a general discussion of internalins. Members of this family are internalin A (InlA), a class 1 (LPXTG-type) internalin.	8.21797e-22
NZ_CP010319.1\|WP_001241816.1\|846537_846918_+\|hypothetical-protein	gnl\|CDD\|131381	TIGR02328, TIGR02328, conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown. [Hypothetical proteins, Conserved].	6.45558e-80
NZ_CP010319.1\|WP_000665410.1\|864382_864817_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	6.40832e-86
NZ_CP010319.1\|WP_001056394.1\|870307_870919_+\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	6.1265e-31
NZ_CP010319.1\|WP_000159230.1\|846141_846513_+\|YbgA-family-protein	gnl\|CDD\|377982	pfam08349, DUF1722, Protein of unknown function (DUF1722). This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from E. coli.	3.86733e-28
NZ_CP010319.1\|WP_000323544.1\|848882_849653_+\|TIGR01457-family-HAD-type-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.19143e-132
NZ_CP010319.1\|WP_000523796.1\|848144_848882_+\|acyl-ACP-thioesterase	gnl\|CDD\|366738	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase. This family consists of various acyl-acyl carrier protein (ACP) thioesterases (TE) these terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid.	1.5045e-110
NZ_CP010319.1\|WP_000168908.1\|864969_867762_+\|cation-transporting-P-type-ATPase	gnl\|CDD\|223550	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism].	0

>NZ_CP010319.1|WP_000590706.1|855886_856552_+|type-II-A-CRISPR-associated-protein-Csn2
MIKINFPILDEPLVLSNATILTIEDVSVYSSLVKHFYQYDVDEHLKLFDDKQKSLKATELMLVTDILGYDVNSAPILKLIHGDLENQFNEKPEVKSMVEKLAATITELIAFECLENELDLEYDEITILELIKALGVKIETQSDTIFEKCFEIIQVYHYLTKKNLLVFVNSGAYLTKDEVIKLCEYINLMQKSVLFLEPRRLYDLPQYVIDKDYFLIGENMV
>NZ_CP010319.1|WP_000122194.1|855558_855900_+|CRISPR-associated-endonuclease-Cas2
MSYRYMRMILMFDMPTETAEERKAYRKFRKFLLSEGFIMHQFSVYSKLLLNNTANNAMIGRLKVNNPKKGNITLLTVTEKQFARMVYLHGERNTSVANSDSRLVFLGDSYDQD
>NZ_CP010319.1|WP_000929493.1|854692_855562_+|type-II-CRISPR-associated-endonuclease-Cas1
MAGWRTVVVNTHSKLSYKNNHLIFKDSYQTEMIHLSEIDILIMETTDIVLSTMLIKRLVDENILVIFCNDKRLPTAMLMPYYARHDSSLQLSRQMSWIEDVKADVWTSIIAQKILNQSFYLGECSFFEKSQSIMNLYHDLEPFDPSNREGHAARIYFNTLFGNDFSREQDNPINAGLDYGYSLLLSMFAREVVKCGCMTQFGLKHANQFNQFNLASDIMEPFRPIVDRIIYENRQSDFVKMKRELFSMFSETYSYNGKEMYLSNIVSDYTKKVIKSLNSDGNGIPEFRI
>NZ_CP010319.1|WP_017648376.1|850578_854691_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MNKPYSIGLDIGTNSVGWSIITDDYKVPAKKMRVLGNTDKEYIKKNLIGALLFDGGNTASDRRLKRTARRRYTRRRNRILYLQEIFAEEMSKVDDSFFHRLEDSFLVEDDKRGSKYPIFATMQEEKDYHEKFPTIYHLRKELADKKEKADLRLFYLALAHIIKFRGHFLIEDDSFDVRNTDIQRQYQAFLEIFDTTFENNHLLSQNIDVEGILTDKISKSAKKDRILAQYPNQKSTGIFAEFLKLIVGNQADFKKHFNLEDKTPLQFAKDSYDEDLENLLGQIGDEFADLFSVAKKLYDSVLLSGILTVTDLSTKAPLSASMIQRYDEHREDLKQLKQFVKASLPEKYQEIFTDSSKDGYAGYIEGKTNQGAFYKYLSKLLTKQEGSEYFLEKIKNEDFLRKQRTFDNGSIPHQVHLTELKAIIRRQSEYYPFLKENLDRIEKILTFRIPYYVGPLAREKSDFAWMTRKTDDSIRPWNFEELVDKEASAEAFIHRMTNNDLYLPEEKVLPKHSLIYEKFTVYNELTKVRYKNEQGETYFFDSNIKQEIFDGVFKEHRKVSKKKLLDFLAKEYEEFRIVDVIGLDKENKAFNASLGTYHDLKKILDKDFLDNPDNESILEDIVQTLTLFEDREMIKKRLENYKDLFTESQLKKLYRRHYTGWGRLSAKLINGIRDKESQKTILDYLIDDGKSNRNFMQLIHDDGLSFKSIISKAQAGSHSDNLKEVVGELAGSPAIKKGILQSLKIVDELVKVMGYEPEQIVVEMARENQTTNQGRRNSRQRYKLLDDGVKNLASDLNGNILKEYPTDNQALQNERLFLYYLQNGRDMYTGKALDIDNLSQYDIDHIIPQAFIKDDSIDNRVLVSSAKNRGKSDDVPSLEIVKDCKVFWKKLLDAKLMSQRKYDNLTKAERGGLTSDDKARFIQRQLVETRQITKHVARILDERFNNELDSKGRRIRKVKIVTLKSNLVSNFRKEFGFYKIREVNNYHHAHDAYLNAVVAKAILTKYPQLEPEFVYGDYPKYNSYKTRKSATEKLFFYSNIMNFFKTKVTLADGTVVVKDDIEVNNDTGEIVWDKKKHFATVRKVLSYPQVNIVKKTEIQTGGFSKESILAHGNSDKLIPRKTKDIYLDPKKYGGFDSPIVAYSVLVVADIKKGKAQKLKTVTELLGITIMERSRFEKNPSAFLESKGYLNIRDDKLMILPKYSLFELENGRRRLLASAGELQKGNELALPTQFMKFLYLASRYNELKGKPEEIEQKQEFVVQHVSYFDDILQIINDFSNRVILADANLEKINKLYQDNKENISVDELANNIINLFTFTSLGAPAAFKFFDKIVDRKRYTSTKEVLNSTLIHQSITGLYETRIDLGKLGED
>NZ_CP010319.1|WP_000653357.1|849642_850299_+|TIGR01906-family-membrane-protein
MKDKLLVVLTWIWIISLATLATIYIAWLIYPIEIQFLKLEKVVYLKAETIYYNFNKLMIYLTHPFISDLNMPSFPSSEDGLKHFADVKYLFTLAHGLFVILTFPVIYFLRRGWKQKSIFLYEGFFKIAIMLPIFIVVCAFLLGFDQFFTLFHEVLFPGDSTWQFNPLTDPVIWILPETFFLHCFIIFLLIYETITIILLIIGRKHLKLRKYKNKMQAL
>NZ_CP010319.1|WP_000323544.1|848882_849653_+|TIGR01457-family-HAD-type-hydrolase
MAYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVETPLETIYTATMATVDYMNDMNRGKTAYVIGEEGLKKAIADAGYVEDTKNPAYVVVGLDWNVTYDKLATATLAIQNGALFIGTNPDLNIPTERGLLPGAGSLNALLEAATRIKPVFIGKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGINNDIDTLLVTTGFTTVEEVPDLPIQPSYVLASLDEWTFNEG
>NZ_CP010319.1|WP_000523796.1|848144_848882_+|acyl-ACP-thioesterase
MGLLYRETYEVPFYESDTNHYMKLPQLLALALQISAKQSLKLGIGDDIVFKRYGLVWVVTDYIIDIERLPKHAEKIVIETEAKAHNKLLCYRYFYIYGEDGQKIITISSAFVLMDFKTRKIHPVLDDITSIYQSQRIKKVIRGPKYHPIGDSKVKQYHVRYFDLDMNGHVNNSKYLEWMYDVLDLDFLSSHIPKKIDLKYIKEIQYGTDIKSHWYQDGLVTRHDIIGGDSIHAQARIEWQEKKED
>NZ_CP010319.1|WP_000914667.1|847010_848141_+|oxygen-independent-coproporphyrinogen-III-oxidase
MLKKPTSAYVHIPFCTQICYYCDFSKVFIKNQPVDAYLQALIREFRSYDITELRTLYIGGGTPTSISAVQLDYLLTELTRDLNLNTLEEFTIEANPGDLTVDKIEVLQKSAVNRVSLGVQTFNDKHLKRIGRSHNEAQIYSTIDDLKTAGFQNISIDLIYALPGQTMDDVRSNVAKALSLNIPHLSLYSLILEHHTVFMNKMRRGKLHLPTEDLEAEMFEYIISEMERNGFEHYEISNFTKPGFESRHNLMYWDNVEYYGVGAGASGYLDGIRYRNRGPIQHYLKGVSEGNARLSEEVLSKNEMMEEELFLGLRKKEGVSIGKFEQKFGTSFEKRYGQIVQELQSDGLLKENNGFIQMTKKGLFLGDTVAEKFIVE
>NZ_CP010319.1|WP_001241816.1|846537_846918_+|hypothetical-protein
MRLWHQDIIELLPRQQLLGQHRECCALRGNGWGRKHETVDYVFRYSPYRLFAYHQLVMEEMMERGYRVSKEWLIAEYRGMKCPRYDTLNPVDLETPIYPEHNQDYLQECLWNLKAKGIDLPINKIK
>NZ_CP010319.1|WP_000159230.1|846141_846513_+|YbgA-family-protein
MTKEAELLWAKHKYLVLSKSQKIYLDIRQTLKSPNCNVLDVQSLIDQAVLLEESPSQVTNAYMHIWGYFKNKAERQEKEEFLTLLEKYRKTGYQRRKLLAFLKQLLAKYPNSYLQNSSIFEEE
>NZ_CP010319.1|WP_000438313.1|857887_858304_+|nucleoside-diphosphate-kinase
MEQTFFMIKPDGVKRGFIGEVISRIERRGFSIDRLEVRHADADILKRHYAELTDRPFFPTLVDYMTSGPVIIGVISGEEVISTWRTMMGSTNPKDALPGTIRGDFAQAPSPNQATCNIVHGSDSPESATREIAIWFNN
>NZ_CP010319.1|WP_001019133.1|858439_860272_+|elongation-factor-4
MNIEDLKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSREMQAQLLDSMDLERERGITIKLNAIELNYTAKDGETYIFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVRAEVEDVIGLDASEAVLASAKAGIGIEEILEQIVEKVPAPTGEVDAPLQALIFDSVYDAYRGVILQVRIVNGMVKPGDKIQMMSNGKTFDVTEVGIFTPKAVGRDFLATGDVGYIAASIKTVADTRVGDTITLANNPAIEPLHGYKQMNPMVFAGLYPIESNKYNDLREALEKLQLNDASLQFEPETSQALGFGFRCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVYHVNTTDGEMLEVSNPSEFPDPTRVDSIEEPYVKAQIMVPQEFVGAVMELAQRKRGDFVTMDYIDDNRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYEISEYRRSQLVKMDILLNGDKVDALSFIVHKEFAYERGKLIVDKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKAGKKRMKAIGSVEVPQEAFLSVLSMDDDDKK
>NZ_CP010319.1|WP_000678290.1|860517_863151_+|pneumococcal-type-histidine-triad-protein
MKGQKIIALAGLVLSCHFALTACHTQEHKNSHHIKTKQVAKKKANKKKVSVKESHKKRKGVAGVDFPTDDGFLLTKDSKILSHTDSGIVVAHGNHSHFIFYSDLKGSKFSYLIPNANAKTNKNQAVRNFKAGAVAVNTLNDGYVFNPADIVSEDANGYVVRHGDHFHYIPKASLSQQKQVQASRAVSRLGNQSNSHYRVNSSKIAGLHHPTSDGFLFNGRGIKGTTPTGILVEHHNHLHFISFADLRKGGWGSIADRYQPQKKADSKKQSPSSKKPRTENTLPKDIKDKLAYLARELHLDISRIRVLKTLNGEIGFEYPHDDHTHVIMAKDIDLSKPIPNPHHDDEDHHKGHHHDESDHKHEEHEHTKSNKLSDEDQKKLIYLAEKLGLNPNQIEVLTSEDGSIIFKYPHDDHSHTIASKDIEIGKPIPDGHHDHSHAKDKVGMATLKQIGFDDEIIQDILHADAPTPFPSNETNPEKMRQWLATVTKINIGQRTNPFQRFGLSLMPNIEVLGIGFTPINDMTPVLQFKKLKQLWMTNTGITDYSFLDKMPLLEGLDISQNGIKDLSFLTKYKQLSLIAAANNGITSLKPLAELPNLQFLVLSHNNISDLTPLSNLTKLQELHLDHNNVKNLSALSGKKDLKVLDLSNNKSADLSTLKTTSLETLLLNETNTSNLSFLKQNPKVSNLTINNAKLASLDGIEESDEIVKVEAEGNQIKSLVLKNKQGSLKFLNVTNNQLTSLEGVNNYTSLETLSVSKNKLESLDIKTPNKTVTNLDFSHNNVPTSQLKLNEKNIPEAVAKNFPAVVEGSMVGNGSLAEKAAMASKEDKQVSDNTNHQKNTEKSAQENADSKKENPKTHDEHHDHEETDHAHVGHHHH
>NZ_CP010319.1|WP_025194971.1|863250_863910_+|HD-domain-containing-protein
MTMVKREDVILNATENMVHHKLKNDPSGHDWFHIVRVRNLAVELAHKEGANIFICQMAALLHDIIDDKICQDSKQASYELTQWLYSQDLAIAEVEHILDILQNISFKAGTGLTMKTLEGKIVQDADRLDAMGAIGIARTMAYSGSKGRLIHDPNLKPRENLTLEEYRNGQDTAIMHFYEKLLKLKDLMNTKQGKMLAQKRHDFLELYLAEFYAEWNGKR
>NZ_CP010319.1|WP_000621138.1|863918_864383_+|GNAT-family-N-acetyltransferase
MIRRAKEKDLPAIAELLKQILVLHHGVRPDIFHTRGSKFSKEQLKEMLIDESKPIFVYESDEGKVVAHLFLQLQEKRDLPRKSFKTLYIDDLCIDEEVRGQQIGQKLMDFARQYAKKHGCYNITLNVWNDNQRAVSFYEKLGFKPQQTQMEEIL
>NZ_CP010319.1|WP_000665410.1|864382_864817_+|peptide-methionine-(R)-S-oxide-reductase-MsrB
MKETQEELRQRIGHTAYQVTQNSATEHAFTGKYDDFFEEGIYVDIVSGEVLFSSLDKFQSGCGWPAFSKPIENRMVTNHQDHSHGMHRIEVRSRQADSHLGHVFNDGPVDAGGLRYCINSAALDFIPYDQMAKRGYGDYLSLFD
>NZ_CP010319.1|WP_000168908.1|864969_867762_+|cation-transporting-P-type-ATPase
MASTNNVSDTNTRFAKEELEEVFEELGTTQGGLSDEEVAVRQKKYGLNLLSEVKQESIILLFLKNFTSLMAILLWVGGFVAIVSNSLELGLAIWMVNVINGIFSFIQEYRASQATQALKKMLPSYSRVLRKSSEEKILSEQLVPGDIVLIEEGDRISADGRLIKTTDLQVNQSALTGESNPIYKDSNVENDQSKTLIECDNMVFAGTTVSSGSATMVVTAIGMQTQFGQIADLTQGMKSEKSPLQRELDRLTKQISIISITVGIIFFLAATFFVKEPVSKSFIFALGMIVAFIPEGLLPTVTLSLAMAVQRMAKEHALVKKLSSVETLGATSVICSDKTGTLTQNEMTVNRLWQNGKSYQVTGLGYAPEGQILFEGDNICFGNSDRGDLEKLIRFAHLCSNAQVLPPNDDRSTYTVLGDPTEACLNVLLEKSGINRQENRKFAPRLKELPFDSVRKRMTTIHSLGGDEKDKKISITKGAPKEILNLSDYVLSDDKVIPLNKEERNKIQLANDTFAKDGLRVLAVSYCDIEGFSKEQWTQENLEQHMVFIGLIAMSDPPREGVREAIDKCHAASIRIIMVTGDYGLTALSIAKNIGIIRNDNAKVISGLELSEMTDSQLKKELSGEVVFARVAPEQKYRVVTILQEMGEVVAVTGDGVNDAPALKKSDIGVAMGVTGTDVAKESADMILTDDHFASIVHAVEEGRAVYQNIKKFLTYIFNSNTPEAVPSAFFLFSKGFIPLPLTVMQILAVDLGTDMLPALGLGVEPPETDVMNRPPRRLTDRLLDKGLLIKSFLWYGTIESVLAMGGFFWAHYLRYGNFTFFVANGIPYREATTMTLGAIIFSQIGMVMNSRTSYQSIRALSIFGNKLINFGIIMEILAFLVLVYVPPFHNLFNTASLGLSHWLYLISCPFIMIGLDEVRKLFSSRKNKR
>NZ_CP010319.1|WP_000065324.1|867761_868865_+|DUF2974-domain-containing-protein
MSNIITYLKNNSNLTFDELALNDVDILCLNEFGYISFEKLINTTEMKSVLVCELYHEYLQTMAKSYSFMFTSQRHDLCQLMMTSKRFKNLTLSYYRAEVSLEFEKQFAAMVFTIPNIDYHQVVFRGTDANLIGWKEDFKLTYMREISAHRSAIKYLNTILPYFDKVVLSGHSKGGNLALYAAMFTKPDLKAKIDLIWLIDSPGLQKTLLPTTEYKTTKQKCIRLLPEESIVGMMLYSDIEPLIISSNARGILQHDVTTWEIQEPAILKTGAGLSLKSICFEKTFQQWMAELKSQERKLFFDLLFDSFLSSGVSSLDDFNLASRAKMMKAFHSFRELDDDKKRLFNKSLKLLVTIFWGAYHDNSRKTK
>NZ_CP010319.1|WP_000146569.1|868983_869622_-|CatB-related-O-acetyltransferase
MASILKKHLEKRLELKNDPMRTDMSTGASYPKYGFSVGKYTYGYQQFFYEGVNLKEIGAFCSIAQNVTITGMNHPTDHITTNPFIYYKSRGFINEDRADLIDEKKNGKVIIGNDVWIGTNVTILPSVTIGNGAIIGAGSVITKDIPDYAVVAGTPAKIIKYRFSEEEITLLNASQWWNWSDEAIKEHISEFSDKKEFFNTLKSISENKNHKL
>NZ_CP010319.1|WP_001056394.1|870307_870919_+|TVP38/TMEM64-family-protein
MNMKLSKRYRFWQKVIKALGVLALIATLVLVVYLYKLGILNDSNELKDLVHKYEFWGPMIFIVAQIVQIVFPVIPGGVTTVAGFLIFGPTLGFIYNYIGIIIGSVILFWLVKFYGRKFVLLFMDQKTFDKYESKLETSGYEKFFIFCMASPISPADIMVMITGLSNMSIKRFVTIIMITKPISIIGYSYLWIYGGDILKNFLN

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Crispr_ID: NZ_CP010319_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010319_2

1887281-1887742

Orphan

Consensus_repeat	Method
TGGNTTNNCNTCTGGTTT	CRT

10 spacers

The CRISPR arrays of NZ_CP010319_2

>merge|NZ_CP010319|2|1887281-1887742|CRT
TGGTTTGGCTTCTGGTTTAGCCTCTGGCTTAACGTCTGGTTTAACTTCTGGCTTAGCCTCTGGTCTGGCCTCTGGTTTAACTTCTGGCTTAACGTCTGGCTTAGCTTCTGGCTTAACGTCTGGCTTAACGTCTGGCTTAGCTTCTGGCTTAACGTCCGGTTTGGCTTCTGGCTTAACGTCTGGTTTGGCCTCTGGCTTAACGTCTGGTTTAACTTCTGGCTTAGCCTCTGGCTTAACGTCTGGTTTGGCTTCTGGCTTAACGTCTGGTTTGGCCTCTGGCTTAACGTCTGGTTTAACGTCTGGCTTAGCCTCTGGTTTGGCTTCTGGTTTGGCCTCTGGTTTGGCTTCTGGTTTGGCCTCTGGTTTGGCTTCTGGCTTAGCTTCTGGCTTAACGTCTGGCTTAACATCTGGTTTGGCTTCTGGTTTAACTTCTGGCTTAGCTTCTGGTTTGGCTACTTTTTT

>NZ_CP010319|2|2|1887281-1887742|CRT
TGGTTTGGCTTCTGGTTT	AGCCTCTGGCTTAACGTC
TGGTTTAACTTCTGGCTT	AGCCTCTGGTCTGGCCTCTGGTTTAACTTCTGGCTTAACGTCTGGCTTAGCTTC
TGGCTTAACGTCTGGCTT	AACGTCTGGCTTAGCTTC
TGGCTTAACGTCCGGTTT	GGCTTCTGGCTTAACGTCTGGTTTGGCCTC
TGGCTTAACGTCTGGTTT	AACTTCTGGCTTAGCCTC
TGGCTTAACGTCTGGTTT	GGCTTCTGGCTTAACGTCTGGTTTGGCCTC
TGGCTTAACGTCTGGTTT	AACGTCTGGCTTAGCCTC
TGGTTTGGCTTCTGGTTT	GGCCTCTGGTTTGGCTTC
TGGTTTGGCCTCTGGTTT	GGCTTCTGGCTTAGCTTCTGGCTTAACGTCTGGCTTAACATC
TGGTTTGGCTTCTGGTTT	AACTTCTGGCTTAGCTTC
TGGTTTGGCTACTTTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010319.1\|WP_000903269.1\|1880500_1881109_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010319.1\|WP_000497678.1\|1889845_1890019_-\|preprotein-translocase-subunit-SecE	unknown	unknown	gnl\|CDD\|223762
NZ_CP010319.1\|WP_000010477.1\|1892620_1893505_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP010319.1\|WP_000953631.1\|1885366_1886212_-\|patatin-family-protein	unknown	unknown	gnl\|CDD\|132847
NZ_CP010319.1\|WP_000764814.1\|1890255_1892577_-\|penicillin-binding-protein	unknown	unknown	gnl\|CDD\|223815
NZ_CP010319.1\|WP_001125582.1\|1899479_1900217_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP010319.1\|WP_017647189.1\|1879019_1880408_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP010319.1\|WP_000077187.1\|1895339_1896551_-\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
NZ_CP010319.1\|WP_000057521.1\|1890054_1890207_-\|50S-ribosomal-protein-L33	unknown	unknown	gnl\|CDD\|234783
NZ_CP010319.1\|WP_017647188.1\|1881198_1883700_-\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_CP010319.1\|WP_001159688.1\|1897318_1898521_-\|NupC/NupG-family-nucleoside-CNT-transporter	unknown	unknown	gnl\|CDD\|224883
NZ_CP010319.1\|WP_000161343.1\|1878336_1879023_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP010319.1\|WP_000610952.1\|1872063_1872387_-\|AzlD-domain-containing-protein	unknown	unknown	gnl\|CDD\|226827
NZ_CP010319.1\|WP_053039177.1\|1884076_1885324_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP010319.1\|WP_000887149.1\|1886349_1886889_-\|transcription-termination/antitermination-protein-NusG	unknown	unknown	gnl\|CDD\|180161
NZ_CP010319.1\|WP_053039179.1\|1893529_1895170_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226987
NZ_CP010319.1\|WP_017647190.1\|1873391_1878104_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173801
NZ_CP010319.1\|WP_000410675.1\|1872376_1873069_-\|AzlC-family-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224215
NZ_CP010319.1\|WP_001182060.1\|1898541_1899321_-\|uridine-phosphorylase	unknown	unknown	gnl\|CDD\|350167
NZ_CP010319.1\|WP_000453154.1\|1896617_1897289_-\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|234784

Protein	Function_ID	Function_description	E-value
NZ_CP010319.1\|WP_000497678.1\|1889845_1890019_-\|preprotein-translocase-subunit-SecE	gnl\|CDD\|223762	COG0690, SecE, Preprotein translocase subunit SecE [Intracellular trafficking and secretion].	5.81702e-09
NZ_CP010319.1\|WP_000077187.1\|1895339_1896551_-\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
NZ_CP010319.1\|WP_000010477.1\|1892620_1893505_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	1.5846e-84
NZ_CP010319.1\|WP_000953631.1\|1885366_1886212_-\|patatin-family-protein	gnl\|CDD\|132847	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.	5.13221e-122
NZ_CP010319.1\|WP_000764814.1\|1890255_1892577_-\|penicillin-binding-protein	gnl\|CDD\|223815	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].	0
NZ_CP010319.1\|WP_017647189.1\|1879019_1880408_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	5.74133e-46
NZ_CP010319.1\|WP_001125582.1\|1899479_1900217_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	6.94122e-33
NZ_CP010319.1\|WP_000057521.1\|1890054_1890207_-\|50S-ribosomal-protein-L33	gnl\|CDD\|234783	PRK00504, rpmG, 50S ribosomal protein L33; Validated.	2.53308e-18
NZ_CP010319.1\|WP_017647188.1\|1881198_1883700_-\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_CP010319.1\|WP_001159688.1\|1897318_1898521_-\|NupC/NupG-family-nucleoside-CNT-transporter	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	3.49248e-155
NZ_CP010319.1\|WP_000161343.1\|1878336_1879023_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	8.44527e-63
NZ_CP010319.1\|WP_000610952.1\|1872063_1872387_-\|AzlD-domain-containing-protein	gnl\|CDD\|226827	COG4392, COG4392, Predicted membrane protein [Function unknown].	3.50446e-14
NZ_CP010319.1\|WP_053039177.1\|1884076_1885324_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.06614e-68
NZ_CP010319.1\|WP_000887149.1\|1886349_1886889_-\|transcription-termination/antitermination-protein-NusG	gnl\|CDD\|180161	PRK05609, nusG, transcription antitermination protein NusG; Validated.	3.00072e-83
NZ_CP010319.1\|WP_053039179.1\|1893529_1895170_-\|hypothetical-protein	gnl\|CDD\|226987	COG4640, COG4640, Predicted membrane protein [Function unknown].	1.04934e-07
NZ_CP010319.1\|WP_017647190.1\|1873391_1878104_+\|S8-family-serine-peptidase	gnl\|CDD\|173801	cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	5.44163e-89
NZ_CP010319.1\|WP_000410675.1\|1872376_1873069_-\|AzlC-family-ABC-transporter-permease	gnl\|CDD\|224215	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism].	2.29962e-51
NZ_CP010319.1\|WP_001182060.1\|1898541_1899321_-\|uridine-phosphorylase	gnl\|CDD\|350167	cd17767, UP_EcUdp-like, uridine phosphorylases similar to Escherichia coli Udp and related phosphorylases. Uridine phosphorylase (UP) is specific for pyrimidines, and is involved in pyrimidine salvage and in the maintenance of uridine homeostasis. In addition to E. coli Udp, this subfamily includes Shewanella oneidensis MR-1 UP and Plasmodium falciparum purine nucleoside phosphorylase (PfPNP). PfPNP is an outlier in terms of genetic distance from the other families of PNPs. PfPNP is catalytically active for inosine and guanosine, and in addition, has a weak UP activity. This subfamily belongs to the nucleoside phosphorylase-I (NP-I) family, whose members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	4.65794e-137
NZ_CP010319.1\|WP_000453154.1\|1896617_1897289_-\|deoxyribose-phosphate-aldolase	gnl\|CDD\|234784	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional.	3.25832e-110

>NZ_CP010319.1|WP_000887149.1|1886349_1886889_-|transcription-termination/antitermination-protein-NusG
MLDSFDKGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKTKEIEENRFPGYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVDVFDTNIKEGDVVQIIDGAFIGQEGRVVEIENNKVKLMINMFGSETQAELELYQVAEL
>NZ_CP010319.1|WP_000953631.1|1885366_1886212_-|patatin-family-protein
MLSVGLVLEGGGMRGLYTAGVLDAFLDAGIKVDGIVSVSAGALFGVNFVSRQRERALRYNKKYLSHPKYMSLRSWLRTGNFVNKDFTYYEVPMKLDVFDDEAFKKSNIDFYAVATEMTSGKPEYFKIDSVFEQMEILRASSALPVVSKMVDWQGKKYLDGGLSDSIPVDFARGLGFDKLIVVMTRPLNYQKKPSSGRLYKTLYRKYPNFVKTASNRYQQYNNSLEKVMSLEKTGDLFAIRPSKSLVIGRLEKNPDKLDSIYQLGMKDAKSMMPELNSYLMK
>NZ_CP010319.1|WP_053039177.1|1884076_1885324_+|MFS-transporter
MSPLNINKNNWRALIAAIVASWTDDLNIMFLAFSMSTIITDLHLSAAQAGWIGTITNLGMLVGGLIFGLLADRYNKFKVFKWTILIFSIATGLVFFTTNLSYLYIMRFIAGIGVGGEYGIAIAIMAGIVPANKMGRISSLNGIAGQVGSISSALLAGWLAPALGWRGLFLFGLLPIVLVLWMQFAIDDKDILDQYNTDADDEPLDISIKALFDTPVLATQSLALMVMTTVQIAGYFGMMNWLPTIIQTNLNVSIKNSSLWMIATILGMCLGMLVFGQLLDKFGPRLVYGCFLLSSAICVYLFQFATTMPSMIIGGAIVGFFVNGMFAGYGAMITRLYPHHIRSTANNLILNVGRAIGGFSSVIIGMILDVSNVSMVMLFLASLYIVSFLSMLSIKQLKRQKYHTNLTQLDVKPTD
>NZ_CP010319.1|WP_017647188.1|1881198_1883700_-|leucine--tRNA-ligase
MTFYNHKEIEPKWQAFWADNHTFKTGTDASKPKFYALDMFPYPSGAGLHVGHPEGYTATDILSRFKRAQGHNVLHPMGWDAFGLPAEQYAMDTGNDPAEFTAENIANFKRQINALGFSYDWDREVNTTDPNYYKWTQWIFTKLYEKGLAYEAEVPVNWVEELGTAIANEEVLPDGTSERGGYPVVRKPMRQWMLKITAYAERLLEDLEEVDWPESIKDMQRNWIGKSTGANVTFKVKDTDKDFTVFTTRPDTLFGATYAVLAPEHALVDAITTADQAEAVAEYKRQASLKSDLARTDLAKEKTGVWTGAYAINPVNGKEIPVWIADYVLASYGTGAIMAVPAHDERDWEFAKQFKLDIIPVLEGGNVEEAAFTEDGLHINSDFLDGLDKASAIAKMVEWLEAEGVGNEKVTYRLRDWLFSRQRYWGEPIPIIHWEDGTSTAVPESELPLVLPVTKDIRPSGTGESPLANLTDWLEVTREDGVKGRRETNTMPQWAGSSWYYLRYIDPHNTEKLADEELLKQWLPVDIYVGGAEHAVLHLLYARFWHKVLYDLGVVPTKEPFQKLFNQGMILGTSYRDSRGALVATDKVEKRDSSFFHVETGEELEQAPAKMSKSLKNVVNPDDVVEQYGADTLRVYEMFMGPLDASIAWSEEGLEGSRKFLDRVYRLITTKEITEENSGALDKVYNETVKAVTEQVDQMKFNTAIAQLMVFVNAANKEDKLFSDYAKGFVQLIAPFAPHLGEELWQVLTASGESISYVPWPSYDESKLVENEIEIVVQIKGKVKAKLVVAKDLSREELQDLALANEKVQAEIAGKDIIKVIAVPNKLVNIVVK
>NZ_CP010319.1|WP_000903269.1|1880500_1881109_+|hypothetical-protein
MLHSKKIHSLSLIAVLSLATYTSLQPNHVTAEQSQKTSTVHMSQKTIEHKLKVADKEAAPLYAKIDHIQRHIEVKKAKDLKVIELYINKDINQLEKQNKRLLTKFYTSIDNQTWDSTSEVKKLIDKTNLSTNEKNRLKLYFEQRAYLETRLNDRYQKFDNSIENQNKELKILTSKIEKIYQKHGITKEVLKTYYAKKTVRAD
>NZ_CP010319.1|WP_017647189.1|1879019_1880408_+|HAMP-domain-containing-histidine-kinase
MKKKSLISNLILINSITLFLGFYLIYFSVNYVIKDYVHQMTRNSMQANFTILDSIYNNKKIPDENMVNQDSIFVWSYYAIFDQHYRMKYGTDNHKKESHDIIRYLTQKRLWQISKEKDGMFVTIKKKTYYVMSKDYSGILVDGSIKKVPKAQSQLFHVINFSDITYTQHLITKINHFLIVILVLTYIPMLFIMRKTFTGIRESIQSVQTYISSLWKNQGNHQSSQKEIVFSDFDPLLLESQEMANRIYQAEESQRNFFQNASHELRTPLMSIQGYTEGVQEGIIDAELAHSVILQESKKMKQLVDDIILLSKLDSNLSDQKDEFSLNELLNSIIAYFKPLANKQKISITYRPDEHEKLLKGNEELIQRAINNILSNALRYAVSHIEISYTNQKLTISNDGPAISKEDLPYIFDRFYKGHGGQTGIGLAMTKEIIKQHHGNIIAESDSTSTTFTIYFNCHKIA
>NZ_CP010319.1|WP_000161343.1|1878336_1879023_+|response-regulator-transcription-factor
MTKIIYFADDEKNIRDLVVPFLEHDGFTVRAFETGDLLLEAYKNQKPDLVILDIMMPGTNGLDVMKSIRQYDNVPIIMLTARDSDVDFITAFNLGTDDYFTKPFSPIKLSLHVKALFKRLDEKAIKNDTQYQFLDLTLDTEKRIALLSNEEMPLTKTEFDFLLVLIEKPETAFSRETLLNRIWGFDDIESRAVDDTIKRLRKKFKQYHSQVSIKTVWGYGFKLIKEDK
>NZ_CP010319.1|WP_017647190.1|1873391_1878104_+|S8-family-serine-peptidase
MNTKQRFSIRKYKLGAVSVLLGTLFFLGGITNVAADSVINKPSDIAVEQQVKDSPTSIANETPTNNTSSALASTAQDNLVTKANNSPTETQPVAESHSQATETFSPVANQPVESTQEVSKTPLTKQNLAVKPTPAISKETPQNIDSNKIITVPKVWNTGYKGEGTVVAIIDSGLDTNHDALQLNESTKAKYQNEQQMNAAKAKAGINYGKWYNNKVIFGHNYVDVNTELKEVKSTSHGMHVTSIATANPSKKDTNELIYGVAPEAQVMFMRVFSDEKRGTGPALYVKAIEDAVKLGADSINLSLGGANGSLVNADDRLIKALEMARLAGVSVVIAAGNDGTFGSGASKPSALYPDYGLVGSPSTAREAISVASYNNTTLVNKVFNIIGLENNKNLNNGLAAYADPKVSDKTFEVGKQYDYVFVGKGNDNDYKDKTLNGKIALIERGDITFTKKVVNAINHGAVGAIIFNNKAGEANLTMSLDPEASAIPAIFTQKEFGDVLAQKSYKIVFNNIKNKQANPNAGVLSDFSSWGLTADGQLKPDLSAPGGSIYAAINDNEYDMMSGTSMASPHVAGATALVKQYLLKEHPELKKGDIERTVKYLLMSTAKAHLNKDTGAYTSPRQQGAGIIDVAAAVQTGLYLTGGENNYGSVTLGNIKDKISFDVTVHNINKVAKDLHYTTYLNTDQVKDGFVTLAPQQLGTFTGKTIRIEPGQTKTITIDIDVSKYHDMLKKVMPNGYFLEGYVRFTDPVDGGEVLSIPYVGFKGEFQNLEVLEKSIYKLVANKEKGFYFQPKQTNEVPGSEDYTALMTTSSEPIYSTDGTSPIQLKALGSYKSIDGKWILQLDQKGQPHLAISPNDDQNQDAVAVKGVFLRNFNNLRAKVYRADDVNLQKPLWVSAPQAGDKNYYSGNTENPKSTFLYDTEWKGTTTDGIPLEDGKYKYVLTYYSDVPGSKPQQMVFDITLDRQAPTLTTATYDKDRRIFKARPAVEHGESDIFREQVFYLKKDKDGHYNSVLRQKGEDGILVEDNKVFIKQEKDGSFILPKEVNDFSHVYYTVEDYAGNLVSAKLEDLINIGNKNGLVNVKVFSPELNSNVDIDFSYSVKDDKGNVIKKQHHGKDLNLLKLPFGTYTFDLFLYDEERANLISPKSVTVTISEKDSLKDVLFKVNLLKKAALLVEFDKLLPKGATVQLVTKTNTVVDLPKATYSPTDYGKNIPVGDYRLNVTLPSGYSTLENLDDLLVSVKEGQVNLTKLTLINKAPLINALAEQTDIITQPVFYNAGTHLKNNYLANLEKAQTLIKNRVEQTSIDNAIAALRESRQALNGKETDTSLLAKAILAETEIKGNYQFVNASPLSQSTYINQVQLAKNLLQKPNVTQSEVDKALENLDIAKNQLNGHETDYSGLHHMIIKANVLKQTSSKYQNASQFAKENYNNLIKKAELLLSNRQATQAQVEELLNQIKATEQELDGRDRVSSAENYSQSLNDNDSLNTTPINPPNQPQALIFKKGMTKESEVAQKRVLGVTSQTDNQKVKTNKLPKTGESTPKITYTILLFSLSMLGLATIKLKSIKRE
>NZ_CP010319.1|WP_000410675.1|1872376_1873069_-|AzlC-family-ABC-transporter-permease
MEKGFKDGVKDALPTALGYISIGLAFGIVASASDLSAIEVGLMSALVYGGSAQFAMCALLLAKADLMTITMTVFLVNLRNMLMSLHATTIFKSAHLMNQLAIGTLITDESYGVLLGEALHHKVVSPSWMHGNNVMSYLTWVISTIIGTLLGSTIPNPEMFGLDFALVAMFIGLFVFQLFGMLSDGKRLVVYVLASVGLSYFLLATFLSGALSVLLATVVGCSVGVVLDDK
>NZ_CP010319.1|WP_000610952.1|1872063_1872387_-|AzlD-domain-containing-protein
MINSTVFLAILLGFVVSWVPRVAPFIFVKYKGLPNSLVKFLKFLPLSILFALTFSSFFSVKLGQLPTLKCLDLLAGIPTLVVTIRYRNLFYTVLTGIVTMALLRLLF
>NZ_CP010319.1|WP_000497678.1|1889845_1890019_-|preprotein-translocase-subunit-SecE
MFVKGIFQVLRDTTWPNRKQRWKDFISILEYTVFFTIVIYIFDKLLAAGVMDLINRF
>NZ_CP010319.1|WP_000057521.1|1890054_1890207_-|50S-ribosomal-protein-L33
MAQKKASLACTECGSRNYSIGVSSTPKPTRLEVNKFCKYCKKYTIHKETR
>NZ_CP010319.1|WP_000764814.1|1890255_1892577_-|penicillin-binding-protein
MKLFDKFIDLFRVDEDNDEMTRKNEQETREETSNLDGEEVYDIDDITRPSKSQYQRGIRHQKKNAKSRPEWLQKVDRYLPSPKNPIRRFWRRYRIGKLLFIALMAFILIFGSYLFYLSKTATVSDLQSALKTTTTIYDKNKEYAGKLSGQKGTYVELNAISDHLKNAVIATEDRTFYENNGVNFKRFFLAVATLGKFGGGSTITQQLAKNAYLSQDQTIKRKAREFFLALELTKKYSKAEILTMYLNNSYFGNGVWGVEDASRKYFGTSAANLTVDEAATLAGMLKGPEVYNPYYSVENATNRRDTVLAAMVDAGKLTKSQAKEAASIGMKNRLADTYAGKINDYRYPSYFDAVVNEAIDTYGISEKDIVNNGYKIYTALDQNYQSGMQKTFDDTSLFPVSDYDGQSAQGASVALDPKTGGVRGLVGRVQSTKDAQFRSFNYATQSKRSPASTIKPLVVYSPAIASGWSIDKELPNKVQDFHGYKPSNYGGIETESIPMYQALANSYNIPAVYTLDKLGINKAFTYGRKFGLNMSSANKELGVALGGSVTTNPLEMAQAYSTFANDGIMHRAHLITRIETANGKLVKQFTDKPKRVISRSVASKMTSMMLGTFSNGTAINANVYGYTMAGKTGTTETDFNPNLSGDQWVVGYTPDVVISQWVGFKNTDKHHYLTDSSAGTASNIFSTQASYILPYTKGSSFTHIENAYFQNGIGSVYNAQDASNTTNQESRSIINDLKDSASKAAQDISRAVEDSNFQEKVKDAWNSLKDYFR
>NZ_CP010319.1|WP_000010477.1|1892620_1893505_+|RluA-family-pseudouridine-synthase
MSFSLKIRNPYGEHTVKELLEDYFLIPRKIRHFLRVKKHVLINNEFINWQTVVQENDTITLIFDDEDYPTKKIPLGRAELIDCLYEDEHLIIVNKPEGMKTHGNQPNEIALLNHVSAYSGQTCYVVHRLDMETSGAVLFAKNPFILPLINQRLERKEIWREYWALVEGKFSPKHQVLRDKIGRNRHDRRKRIIDSKNGQHAMTIIDVLKYTQNSSLIKCRLETGRTHQIRIHLSHHGHPLIGDPLYNPSSNNERLMLHAHRLTLSHPLTCETISVEAPSSTFEKILNNYKKGVG
>NZ_CP010319.1|WP_053039179.1|1893529_1895170_-|hypothetical-protein
MFDFFKKKVVKVCLVIFGIVLVSLLSLGFFYFSKGQVLSRFVAARSRTSGQAFDNIKEYMVWSDTGESITNDEANYANFEPLSKSEARKLGQEIKEGNKNDSMYLKRVGSRLGIFPDYRIANKPMSLTLKTNVPKLDVLLNQKKVATSNSDHFSVTVERLPRTHYTASLEGTSDGKEIKLKKDYDGKNQTIDLSVAFKSFTVTSNLMDGNLYFGDNRIAKLKDGSYSVENYPVTDGSKAYIKKVFNDGEIISHKQKLISIADNQTIKLDVDGLLNEKEAGQKLITAFNQLILYVSTGQDPQTLGTVFEKGAENDFYKGLKESIKAKFVTDNRKASHFTIPNIVLNKMTQVGKESYQVNFAADYDFNYDKSTDPDKKTYGHIIQNLTGNFIMKKSGNSYLISNDGKKDITVAKETNKVKADPVSIFPENLVGSWKGEVEDGTVTMTFDKDGKVTQKKVYKDSKSKENNHSAKVTKLEDKGNGLYLYQYESGTDTTTFVTGGIGGLKVKYAYGIKIEGNKIIPVIWQTSSDGEFDYHKPLLSKPLTKQ
>NZ_CP010319.1|WP_000077187.1|1895339_1896551_-|phosphopentomutase
MSQFDRIHLVVLDSVGIGAAPDANDFVNAGVPDGASDTLGHISKTVGLAVPNMAKIGLGNIPRPQALKTVPAEENPSGYATKLQEVSLGKDTMTGHWEIMGLNITEPFDTFWNGFPEDIITKIEDFSGRKVIREANKPYSGTAVIDDFGPRQMETGELIIYTSADPVLQIAAHEDIIPLEELYRICEYARSITMERPALLGRIIARPYVGEPGNFTRTANRHDYAVSPFEDTVLNKLDQAGIDTYAVGKINDIFNGSGINHDMGHNKSNSHGIDTLIKTMGLSEFEKGFSFTNLVDFDALYGHRRDPHGYRDCLHEFDERLPEIISAMRDKDLLLITADHGNDPTYAGTDHTREYIPLLAYSPSFTGNGLIPVGHFADISATVADNFGVDTAMIGESFLQDLV
>NZ_CP010319.1|WP_000453154.1|1896617_1897289_-|deoxyribose-phosphate-aldolase
MEVKDILKTVDHTLLATTATWPEIQTILDDAMAYETASACIPASYVKKAAEYVSGKLAICTVIGFPNGYSTTAAKVFECQDAIKNGADEIDMVINLTDVKNGDFDTVEEEIRQIKAACQDHILKVIVETCQLTKEELIELCGVVTRSGADFIKTSTGFSTAGATFEDVEVMAKYVGEGVKIKAAGGISSLEDAEKFIALGASRLGTSRIIKIVKNQKVEEGTY
>NZ_CP010319.1|WP_001159688.1|1897318_1898521_-|NupC/NupG-family-nucleoside-CNT-transporter
MQFIYSIIGILLVLGIVYAISFNRKSVSLSLIGKALIVQFIIALILVRIPLGQQVVSVVSTGVTKVINCGQAGLNFVFGSLADSGAKTGFIFAIQTLGNIVFLSALVSLLYYVGILGFVVKWIGKGVGKIMKSSEVESFVAVANMFLGQTDSPILVSKYLGRMTDSEIMVVLVSGMGSMSVSILGGYIALGIPMEYLLIASTMVPIGSILIAKILLPQTEPVQKIDDIKMDNKGNNANVIDAIAEGASTGAQMAFSIGASLIAFVGLVSLINMMLSGLGIRLEQIFSYVFAPFGFLMGFDHKNILLEGNLLGSKLILNEFVSFQQLGHLIKSLDYRTALVATISLCGFANLSSLGICVSGIAVLCPEKRGTLARLVFRAMIGGIAVSMLSAFIVGIVTLF
>NZ_CP010319.1|WP_001182060.1|1898541_1899321_-|uridine-phosphorylase
MQNYSGEVGLQYHLQIRPGDVGRYVIMPGDPKRCAKIAEHFDNAVLVADSREYVTYTGTLNGEKVSVTSTGIGGPSASIAMEELKLCGADTFIRVGTCGGIDLDVKGGDIVIATGAIRMEGTSKEYAPIEFPAVADLEVTNALVNAAKKLGYTSHAGVVQCKDAFYGQHEPERMPVSYELLNKWEAWKRLGTKASEMESAALFVAASHLGVRCGSDFLVVGNQERNALGMDNPMAHDTEAAIQVAVEALRTLIENDKSQ
>NZ_CP010319.1|WP_001125582.1|1899479_1900217_+|GntR-family-transcriptional-regulator
MPKNELNNKLNKLKHVQVYNKIFNMIQDGTYSPGMQLPSEPELAGQLNVSRATLRKSLALLQEDHLVKNIRGKGNFIRENSSNLSENGYENRQHPIKTCLTSKITEVELEFRVEVPAEAITASLKQETPVVVIADRWYHTDDGPLAYTLSFIPIELISDAEISLHDTKQLLNFIEEGIYQEGISSHSQSHLGYATSGNFSATKYTLSDHGQFILIQETIFNQEKILMCNKHYVPIEHFELSITSH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP010319_2	2.8\|1887611\|18\|NZ_CP010319\|CRT	1887611-1887628	18	NZ_CP010319.1	1888022-1888039	0	1.0
NZ_CP010319_2	2.5\|1887491\|18\|NZ_CP010319\|CRT	1887491-1887508	18	NZ_CP010319.1	1588663-1588680	2	0.889

1. spacer 2.8|1887611|18|NZ_CP010319|CRT matches to position: 1888022-1888039, mismatch: 0, identity: 1.0

ggcctctggtttggcttc	CRISPR spacer
ggcctctggtttggcttc	Protospacer
******************

2. spacer 2.5|1887491|18|NZ_CP010319|CRT matches to position: 1588663-1588680, mismatch: 2, identity: 0.889

aacttctggcttagcctc	CRISPR spacer
aatttctggctttgcctc	Protospacer
**.********* *****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP010319_1	1.1\|856693\|26\|NZ_CP010319\|PILER-CR	856693-856718	26	MK448956	Streptococcus phage Javan48, complete genome	38397-38422	0	1.0
NZ_CP010319_1	1.1\|856693\|26\|NZ_CP010319\|PILER-CR	856693-856718	26	AY428505	Streptococcus agalactiae bacteriophage NCTC11261 lysin PlyGBS gene, complete cds	319-344	0	1.0
NZ_CP010319_1	1.1\|856693\|26\|NZ_CP010319\|PILER-CR	856693-856718	26	JX409894	Streptococcus phage LYGO9, complete genome	8731-8756	0	1.0
NZ_CP010319_1	1.1\|856693\|26\|NZ_CP010319\|PILER-CR	856693-856718	26	JX409895	Streptococcus phage JX01, complete genome	20578-20603	0	1.0
NZ_CP010319_1	1.1\|856693\|26\|NZ_CP010319\|PILER-CR	856693-856718	26	MH853356	Streptococcus phage LF2, partial genome	23013-23038	0	1.0
NZ_CP010319_1	1.3\|856689\|30\|NZ_CP010319\|CRISPRCasFinder,CRT	856689-856718	30	JX409894	Streptococcus phage LYGO9, complete genome	8731-8760	0	1.0
NZ_CP010319_1	1.3\|856689\|30\|NZ_CP010319\|CRISPRCasFinder,CRT	856689-856718	30	MK448956	Streptococcus phage Javan48, complete genome	38393-38422	0	1.0
NZ_CP010319_1	1.3\|856689\|30\|NZ_CP010319\|CRISPRCasFinder,CRT	856689-856718	30	JX409895	Streptococcus phage JX01, complete genome	20578-20607	0	1.0
NZ_CP010319_1	1.3\|856689\|30\|NZ_CP010319\|CRISPRCasFinder,CRT	856689-856718	30	MH853356	Streptococcus phage LF2, partial genome	23013-23042	0	1.0
NZ_CP010319_1	1.3\|856689\|30\|NZ_CP010319\|CRISPRCasFinder,CRT	856689-856718	30	AY428505	Streptococcus agalactiae bacteriophage NCTC11261 lysin PlyGBS gene, complete cds	315-344	0	1.0
NZ_CP010319_1	1.1\|856693\|26\|NZ_CP010319\|PILER-CR	856693-856718	26	MK448829	Streptococcus phage Javan7, complete genome	35073-35098	1	0.962
NZ_CP010319_1	1.1\|856693\|26\|NZ_CP010319\|PILER-CR	856693-856718	26	MK448749	Streptococcus phage Javan39, complete genome	39978-40003	1	0.962
NZ_CP010319_1	1.1\|856693\|26\|NZ_CP010319\|PILER-CR	856693-856718	26	MH853355	Streptococcus phage LF1, complete genome	25939-25964	1	0.962
NZ_CP010319_1	1.1\|856693\|26\|NZ_CP010319\|PILER-CR	856693-856718	26	AY149214	Streptococcus agalactiae bacteriophage B30 peptidoglycan endolysin gene, complete cds	463-488	1	0.962
NZ_CP010319_1	1.1\|856693\|26\|NZ_CP010319\|PILER-CR	856693-856718	26	MK448837	Streptococcus phage Javan10, complete genome	33636-33661	1	0.962
NZ_CP010319_1	1.1\|856693\|26\|NZ_CP010319\|PILER-CR	856693-856718	26	MH853358	Streptococcus phage LF4, complete genome	25939-25964	1	0.962
NZ_CP010319_1	1.3\|856689\|30\|NZ_CP010319\|CRISPRCasFinder,CRT	856689-856718	30	MK448829	Streptococcus phage Javan7, complete genome	35069-35098	1	0.967
NZ_CP010319_1	1.3\|856689\|30\|NZ_CP010319\|CRISPRCasFinder,CRT	856689-856718	30	MK448749	Streptococcus phage Javan39, complete genome	39974-40003	1	0.967
NZ_CP010319_1	1.3\|856689\|30\|NZ_CP010319\|CRISPRCasFinder,CRT	856689-856718	30	MH853355	Streptococcus phage LF1, complete genome	25935-25964	1	0.967
NZ_CP010319_1	1.3\|856689\|30\|NZ_CP010319\|CRISPRCasFinder,CRT	856689-856718	30	AY149214	Streptococcus agalactiae bacteriophage B30 peptidoglycan endolysin gene, complete cds	459-488	1	0.967
NZ_CP010319_1	1.3\|856689\|30\|NZ_CP010319\|CRISPRCasFinder,CRT	856689-856718	30	MK448837	Streptococcus phage Javan10, complete genome	33632-33661	1	0.967
NZ_CP010319_1	1.3\|856689\|30\|NZ_CP010319\|CRISPRCasFinder,CRT	856689-856718	30	MH853358	Streptococcus phage LF4, complete genome	25935-25964	1	0.967
NZ_CP010319_1	1.5\|856821\|30\|NZ_CP010319\|CRISPRCasFinder,CRT	856821-856850	30	MK448796	Streptococcus phage Javan53, complete genome	38071-38100	2	0.933
NZ_CP010319_1	1.5\|856821\|30\|NZ_CP010319\|CRISPRCasFinder,CRT	856821-856850	30	MK448956	Streptococcus phage Javan48, complete genome	32575-32604	2	0.933
NZ_CP010319_2	2.4\|1887443\|30\|NZ_CP010319\|CRT	1887443-1887472	30	NC_017273	Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence	246034-246063	4	0.867
NZ_CP010319_2	2.4\|1887443\|30\|NZ_CP010319\|CRT	1887443-1887472	30	NZ_AP019795	Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence	105602-105631	4	0.867
NZ_CP010319_2	2.4\|1887443\|30\|NZ_CP010319\|CRT	1887443-1887472	30	NZ_LR027520	Thermus thermophilus isolate TTHNAR1 plasmid 4, complete sequence	159368-159397	4	0.867
NZ_CP010319_2	2.4\|1887443\|30\|NZ_CP010319\|CRT	1887443-1887472	30	NZ_AP019793	Thermus thermophilus strain AA2-20 plasmid pAA220, complete sequence	135022-135051	4	0.867
NZ_CP010319_2	2.6\|1887527\|30\|NZ_CP010319\|CRT	1887527-1887556	30	NC_017273	Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence	246034-246063	4	0.867
NZ_CP010319_2	2.6\|1887527\|30\|NZ_CP010319\|CRT	1887527-1887556	30	NZ_AP019795	Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence	105602-105631	4	0.867
NZ_CP010319_2	2.6\|1887527\|30\|NZ_CP010319\|CRT	1887527-1887556	30	NZ_LR027520	Thermus thermophilus isolate TTHNAR1 plasmid 4, complete sequence	159368-159397	4	0.867
NZ_CP010319_2	2.6\|1887527\|30\|NZ_CP010319\|CRT	1887527-1887556	30	NZ_AP019793	Thermus thermophilus strain AA2-20 plasmid pAA220, complete sequence	135022-135051	4	0.867
NZ_CP010319_1	1.8\|857019\|30\|NZ_CP010319\|CRISPRCasFinder,CRT	857019-857048	30	KU878088	Bacillus phage AR9, complete genome	204172-204201	5	0.833
NZ_CP010319_1	1.8\|857019\|30\|NZ_CP010319\|CRISPRCasFinder,CRT	857019-857048	30	MF360957	Bacillus virus PBS1, complete genome	114434-114463	5	0.833
NZ_CP010319_1	1.13\|856953\|29\|NZ_CP010319\|PILER-CR	856953-856981	29	MN855659	Bacteriophage sp. isolate 142, complete genome	4619-4647	5	0.828
NZ_CP010319_1	1.6\|856887\|30\|NZ_CP010319\|CRISPRCasFinder,CRT	856887-856916	30	NZ_CP019583	Lactobacillus helveticus strain LH5 plasmid pCBTLH5_2, complete sequence	2104-2133	6	0.8
NZ_CP010319_1	1.6\|856887\|30\|NZ_CP010319\|CRISPRCasFinder,CRT	856887-856916	30	NZ_AP018406	Lactobacillus plantarum strain SN35N plasmid pSN35N-1, complete sequence	11383-11412	6	0.8
NZ_CP010319_1	1.6\|856887\|30\|NZ_CP010319\|CRISPRCasFinder,CRT	856887-856916	30	NC_014386	Lactobacillus helveticus R0052 plasmid pIR52-1, complete sequence	4282-4311	6	0.8
NZ_CP010319_1	1.7\|856953\|30\|NZ_CP010319\|CRISPRCasFinder,CRT	856953-856982	30	MN855659	Bacteriophage sp. isolate 142, complete genome	4618-4647	6	0.8
NZ_CP010319_1	1.7\|856953\|30\|NZ_CP010319\|CRISPRCasFinder,CRT	856953-856982	30	JQ309827	Enterococcus phage vB_Efae230P-4, complete genome	13012-13041	6	0.8
NZ_CP010319_1	1.7\|856953\|30\|NZ_CP010319\|CRISPRCasFinder,CRT	856953-856982	30	NC_049932	Enterococcus phage vB_EfaP_Ef6.2, complete genome	5162-5191	6	0.8
NZ_CP010319_1	1.7\|856953\|30\|NZ_CP010319\|CRISPRCasFinder,CRT	856953-856982	30	NC_049933	Enterococcus phage vB_EfaP_Ef6.3, complete genome	5027-5056	6	0.8
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	NZ_CP038792	Escherichia coli strain PF9285 plasmid pDW54_1, complete sequence	60939-60967	6	0.793
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	NZ_LR792629	Klebsiella pneumoniae isolate SB5881 plasmid SB5881_II	43303-43331	6	0.793
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	NZ_FO834905	Klebsiella pneumoniae strain Kp52.145 plasmid II, complete sequence	95963-95991	6	0.793
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	NC_019254	Shigella sp. MO17 plasmid pMO17_54, complete sequence	30786-30814	6	0.793
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	MH622943	Myoviridae sp. isolate ctbc_4, complete genome	209711-209739	6	0.793
NZ_CP010319_1	1.10\|857150\|30\|NZ_CP010319\|CRISPRCasFinder,CRT	857150-857179	30	MK580972	Stenotrophomonas phage YB07, complete genome	157678-157707	6	0.8
NZ_CP010319_1	1.13\|856953\|29\|NZ_CP010319\|PILER-CR	856953-856981	29	JQ309827	Enterococcus phage vB_Efae230P-4, complete genome	13013-13041	6	0.793
NZ_CP010319_1	1.13\|856953\|29\|NZ_CP010319\|PILER-CR	856953-856981	29	NC_049932	Enterococcus phage vB_EfaP_Ef6.2, complete genome	5162-5190	6	0.793
NZ_CP010319_1	1.13\|856953\|29\|NZ_CP010319\|PILER-CR	856953-856981	29	NC_049933	Enterococcus phage vB_EfaP_Ef6.3, complete genome	5027-5055	6	0.793
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	AP022644	Bacillus wiedmannii PL1 plasmid pBwiPL1-1 DNA, complete sequence	7614-7641	6	0.786
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	NZ_CP038792	Escherichia coli strain PF9285 plasmid pDW54_1, complete sequence	60940-60967	6	0.786
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	NZ_CP044263	Campylobacter armoricus strain CA639 plasmid pCA639-2, complete sequence	12648-12675	6	0.786
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	NZ_LR792629	Klebsiella pneumoniae isolate SB5881 plasmid SB5881_II	43304-43331	6	0.786
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	NZ_FO834905	Klebsiella pneumoniae strain Kp52.145 plasmid II, complete sequence	95963-95990	6	0.786
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	NC_019254	Shigella sp. MO17 plasmid pMO17_54, complete sequence	30786-30813	6	0.786
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	MH622943	Myoviridae sp. isolate ctbc_4, complete genome	209711-209738	6	0.786
NZ_CP010319_1	1.16\|857150\|29\|NZ_CP010319\|PILER-CR	857150-857178	29	MK580972	Stenotrophomonas phage YB07, complete genome	157679-157707	6	0.793
NZ_CP010319_1	1.7\|856953\|30\|NZ_CP010319\|CRISPRCasFinder,CRT	856953-856982	30	MW149109	Microvirus sp. isolate gila12, complete genome	4811-4840	7	0.767
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	AP022644	Bacillus wiedmannii PL1 plasmid pBwiPL1-1 DNA, complete sequence	7614-7642	7	0.759
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	NZ_CP044263	Campylobacter armoricus strain CA639 plasmid pCA639-2, complete sequence	12647-12675	7	0.759
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	NZ_CP009650	Bacillus pseudomycoides strain BTZ plasmid pBTZ_1, complete sequence	6938-6966	7	0.759
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	CP016196	Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-2, complete sequence	81747-81775	7	0.759
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	NC_019507	Campylobacter phage CP21, complete genome	109792-109820	7	0.759
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	MT932329	Campylobacter phage F379, complete genome	172646-172674	7	0.759
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	MN693878	Marine virus AFVG_250M440, complete genome	6485-6513	7	0.759
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	HE815464	Campylobacter phage CP21 complete sequence	109792-109820	7	0.759
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	FN667788	Campylobacter phage CP220, complete genome	15618-15646	7	0.759
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	NZ_CP053732	Escherichia coli strain CP55_Sichuan plasmid pCP55-IncFIB, complete sequence	51757-51785	7	0.759
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	NZ_CP007625	Bacillus pseudomycoides strain 219298 plasmid unnamed, complete sequence	220505-220533	7	0.759
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	CP043759	Escherichia coli strain CVM N55972 plasmid pN55972-1, complete sequence	49144-49172	7	0.759
NZ_CP010319_1	1.10\|857150\|30\|NZ_CP010319\|CRISPRCasFinder,CRT	857150-857179	30	MN095772	Stenotrophomonas phage Moby, complete genome	147461-147490	7	0.767
NZ_CP010319_1	1.11\|857216\|30\|NZ_CP010319\|CRISPRCasFinder,CRT	857216-857245	30	MT375042	Acinetobacter phage vB_AbaP_Alexa, complete genome	22918-22947	7	0.767
NZ_CP010319_1	1.14\|857019\|29\|NZ_CP010319\|PILER-CR	857019-857047	29	MK017819	Clostridium phage CPD4, complete genome	18746-18774	7	0.759
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	NZ_KX686749	Campylobacter coli strain Tx40 plasmid unnamed, complete sequence	36390-36417	7	0.75
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	NZ_CP007180	Campylobacter coli RM5611 plasmid pRM5611_48kb, complete sequence	40645-40672	7	0.75
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	NZ_CP017869	Campylobacter coli strain MG1116 plasmid pCCDM116L, complete sequence	40168-40195	7	0.75
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	NZ_CP044166	Campylobacter coli strain AR-0416 plasmid pAR-0416	164122-164149	7	0.75
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	NZ_CP023544	Campylobacter jejuni strain CFSAN032806 plasmid pCFSAN032806, complete sequence	38774-38801	7	0.75
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	CP002030	Campylobacter jejuni subsp. jejuni ICDCCJ07001 plasmid pTet, complete sequence	38835-38862	7	0.75
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	NZ_CP017419	Campylobacter jejuni strain MTVDSCj16 plasmid pMTVDSCj16-1, complete sequence	32977-33004	7	0.75
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	NZ_CP017866	Campylobacter coli strain YF2105 plasmid pCCDM105L, complete sequence	17804-17831	7	0.75
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	NZ_CP017879	Campylobacter coli strain BG2108 plasmid pCCDM108L, complete sequence	27254-27281	7	0.75
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	NZ_CP017416	Campylobacter jejuni strain MTVDSCj07 plasmid pMTVDSCj07-1, complete sequence	33561-33588	7	0.75
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	NZ_CP017872	Campylobacter coli strain BP3183 plasmid pCCDM183, complete sequence	26880-26907	7	0.75
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	NZ_CP020775	Campylobacter jejuni strain YH002 plasmid pCJP002, complete sequence	41364-41391	7	0.75
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	NC_022355	Campylobacter coli CVM N29710 plasmid pN29710-1, complete sequence	38740-38767	7	0.75
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	NC_019507	Campylobacter phage CP21, complete genome	109793-109820	7	0.75
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	MT932329	Campylobacter phage F379, complete genome	172647-172674	7	0.75
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	HE815464	Campylobacter phage CP21 complete sequence	109793-109820	7	0.75
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	FN667788	Campylobacter phage CP220, complete genome	15619-15646	7	0.75
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	NZ_CP053732	Escherichia coli strain CP55_Sichuan plasmid pCP55-IncFIB, complete sequence	51757-51784	7	0.75
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	443809-443836	7	0.75
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	NZ_CP045793	Campylobacter coli strain CFSAN032805 plasmid p1CFSAN032805, complete sequence	36969-36996	7	0.75
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	NC_017282	Campylobacter jejuni subsp. jejuni S3 plasmid pTet, complete sequence	13146-13173	7	0.75
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	CP047483	Campylobacter jejuni strain CFSAN096297 plasmid CFSAN096297, complete sequence	25720-25747	7	0.75
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	NZ_CP023546	Campylobacter coli strain CFSAN032805 plasmid pCFSAN032805_1, complete sequence	37540-37567	7	0.75
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	NZ_CP017026	Campylobacter coli plasmid pCC14983A-1, complete sequence	106554-106581	7	0.75
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	CP043759	Escherichia coli strain CVM N55972 plasmid pN55972-1, complete sequence	49144-49171	7	0.75
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	NZ_CP017877	Campylobacter coli strain ZV1224 plasmid pCCDM224L, complete sequence	22300-22327	7	0.75
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	NZ_CP017861	Campylobacter jejuni strain TS1218 plasmid pCJDM218, complete sequence	34264-34291	7	0.75
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	NZ_MK541988	Campylobacter coli strain CVM N61740F plasmid pN61740F, complete sequence	37575-37602	7	0.75
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	NZ_MK541989	Campylobacter coli strain CVM N61925F plasmid pN61925F, complete sequence	13311-13338	7	0.75
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	NC_022354	Campylobacter jejuni subsp. jejuni 00-2544 plasmid unnamed, complete sequence	14941-14968	7	0.75
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	AP014085	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C2A-MedDCM-OCT-S36-C93, * SEQUENCING IN PROGRESS *	4039-4066	7	0.75
NZ_CP010319_1	1.16\|857150\|29\|NZ_CP010319\|PILER-CR	857150-857178	29	MN095772	Stenotrophomonas phage Moby, complete genome	147462-147490	7	0.759
NZ_CP010319_1	1.17\|857216\|29\|NZ_CP010319\|PILER-CR	857216-857244	29	MT375042	Acinetobacter phage vB_AbaP_Alexa, complete genome	22919-22947	7	0.759
NZ_CP010319_1	1.8\|857019\|30\|NZ_CP010319\|CRISPRCasFinder,CRT	857019-857048	30	MK017819	Clostridium phage CPD4, complete genome	18746-18775	8	0.733
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	NZ_KX686749	Campylobacter coli strain Tx40 plasmid unnamed, complete sequence	36389-36417	8	0.724
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	KM659092	Ochrobactrum sp. LM19 plasmid pLM19O2, complete sequence	16917-16945	8	0.724
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	NZ_CP007180	Campylobacter coli RM5611 plasmid pRM5611_48kb, complete sequence	40644-40672	8	0.724
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	NZ_CP017869	Campylobacter coli strain MG1116 plasmid pCCDM116L, complete sequence	40167-40195	8	0.724
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	NZ_CP044166	Campylobacter coli strain AR-0416 plasmid pAR-0416	164121-164149	8	0.724
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	NZ_CP023544	Campylobacter jejuni strain CFSAN032806 plasmid pCFSAN032806, complete sequence	38773-38801	8	0.724
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	CP002030	Campylobacter jejuni subsp. jejuni ICDCCJ07001 plasmid pTet, complete sequence	38834-38862	8	0.724
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	NZ_CP017419	Campylobacter jejuni strain MTVDSCj16 plasmid pMTVDSCj16-1, complete sequence	32976-33004	8	0.724
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	NZ_CP017866	Campylobacter coli strain YF2105 plasmid pCCDM105L, complete sequence	17803-17831	8	0.724
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	NZ_CP017879	Campylobacter coli strain BG2108 plasmid pCCDM108L, complete sequence	27253-27281	8	0.724
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	NZ_CP017416	Campylobacter jejuni strain MTVDSCj07 plasmid pMTVDSCj07-1, complete sequence	33560-33588	8	0.724
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	NZ_CP017872	Campylobacter coli strain BP3183 plasmid pCCDM183, complete sequence	26879-26907	8	0.724
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	NZ_CP020775	Campylobacter jejuni strain YH002 plasmid pCJP002, complete sequence	41363-41391	8	0.724
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	NC_022355	Campylobacter coli CVM N29710 plasmid pN29710-1, complete sequence	38739-38767	8	0.724
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	443809-443837	8	0.724
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	NZ_CP045793	Campylobacter coli strain CFSAN032805 plasmid p1CFSAN032805, complete sequence	36969-36997	8	0.724
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	NC_017282	Campylobacter jejuni subsp. jejuni S3 plasmid pTet, complete sequence	13146-13174	8	0.724
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	CP047483	Campylobacter jejuni strain CFSAN096297 plasmid CFSAN096297, complete sequence	25720-25748	8	0.724
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	NZ_CP023546	Campylobacter coli strain CFSAN032805 plasmid pCFSAN032805_1, complete sequence	37540-37568	8	0.724
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	NZ_CP017026	Campylobacter coli plasmid pCC14983A-1, complete sequence	106554-106582	8	0.724
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	NZ_CP017877	Campylobacter coli strain ZV1224 plasmid pCCDM224L, complete sequence	22300-22328	8	0.724
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	NZ_CP017861	Campylobacter jejuni strain TS1218 plasmid pCJDM218, complete sequence	34264-34292	8	0.724
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	NZ_MK541988	Campylobacter coli strain CVM N61740F plasmid pN61740F, complete sequence	37575-37603	8	0.724
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	NZ_MK541989	Campylobacter coli strain CVM N61925F plasmid pN61925F, complete sequence	13311-13339	8	0.724
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	NC_022354	Campylobacter jejuni subsp. jejuni 00-2544 plasmid unnamed, complete sequence	14941-14969	8	0.724
NZ_CP010319_1	1.9\|857085\|29\|NZ_CP010319\|CRISPRCasFinder,CRT	857085-857113	29	AP014085	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C2A-MedDCM-OCT-S36-C93, * SEQUENCING IN PROGRESS *	4039-4067	8	0.724
NZ_CP010319_1	1.14\|857019\|29\|NZ_CP010319\|PILER-CR	857019-857047	29	MN417334	Clostridium phage CPAS-15, complete genome	42723-42751	8	0.724
NZ_CP010319_1	1.14\|857019\|29\|NZ_CP010319\|PILER-CR	857019-857047	29	KY206887	Clostridium phage Clo-PEP-1, complete genome	29291-29319	8	0.724
NZ_CP010319_1	1.14\|857019\|29\|NZ_CP010319\|PILER-CR	857019-857047	29	MF001357	Clostridium phage CP3, partial genome	20391-20419	8	0.724
NZ_CP010319_1	1.15\|857085\|28\|NZ_CP010319\|PILER-CR	857085-857112	28	KM659092	Ochrobactrum sp. LM19 plasmid pLM19O2, complete sequence	16918-16945	8	0.714
NZ_CP010319_1	1.8\|857019\|30\|NZ_CP010319\|CRISPRCasFinder,CRT	857019-857048	30	MN417334	Clostridium phage CPAS-15, complete genome	42722-42751	9	0.7
NZ_CP010319_1	1.8\|857019\|30\|NZ_CP010319\|CRISPRCasFinder,CRT	857019-857048	30	KY206887	Clostridium phage Clo-PEP-1, complete genome	29290-29319	9	0.7
NZ_CP010319_1	1.8\|857019\|30\|NZ_CP010319\|CRISPRCasFinder,CRT	857019-857048	30	MF001357	Clostridium phage CP3, partial genome	20390-20419	9	0.7
NZ_CP010319_1	1.10\|857150\|30\|NZ_CP010319\|CRISPRCasFinder,CRT	857150-857179	30	MN693441	Marine virus AFVG_25M481, complete genome	6991-7020	9	0.7

1. spacer 1.1|856693|26|NZ_CP010319|PILER-CR matches to MK448956 (Streptococcus phage Javan48, complete genome) position: , mismatch: 0, identity: 1.0

ttggggcaaaatcaaggcggtgctaa	CRISPR spacer
ttggggcaaaatcaaggcggtgctaa	Protospacer
**************************

2. spacer 1.1|856693|26|NZ_CP010319|PILER-CR matches to AY428505 (Streptococcus agalactiae bacteriophage NCTC11261 lysin PlyGBS gene, complete cds) position: , mismatch: 0, identity: 1.0

ttggggcaaaatcaaggcggtgctaa	CRISPR spacer
ttggggcaaaatcaaggcggtgctaa	Protospacer
**************************

3. spacer 1.1|856693|26|NZ_CP010319|PILER-CR matches to JX409894 (Streptococcus phage LYGO9, complete genome) position: , mismatch: 0, identity: 1.0

ttggggcaaaatcaaggcggtgctaa	CRISPR spacer
ttggggcaaaatcaaggcggtgctaa	Protospacer
**************************

4. spacer 1.1|856693|26|NZ_CP010319|PILER-CR matches to JX409895 (Streptococcus phage JX01, complete genome) position: , mismatch: 0, identity: 1.0

ttggggcaaaatcaaggcggtgctaa	CRISPR spacer
ttggggcaaaatcaaggcggtgctaa	Protospacer
**************************

5. spacer 1.1|856693|26|NZ_CP010319|PILER-CR matches to MH853356 (Streptococcus phage LF2, partial genome) position: , mismatch: 0, identity: 1.0

ttggggcaaaatcaaggcggtgctaa	CRISPR spacer
ttggggcaaaatcaaggcggtgctaa	Protospacer
**************************

6. spacer 1.3|856689|30|NZ_CP010319|CRISPRCasFinder,CRT matches to JX409894 (Streptococcus phage LYGO9, complete genome) position: , mismatch: 0, identity: 1.0

gtttttggggcaaaatcaaggcggtgctaa	CRISPR spacer
gtttttggggcaaaatcaaggcggtgctaa	Protospacer
******************************

7. spacer 1.3|856689|30|NZ_CP010319|CRISPRCasFinder,CRT matches to MK448956 (Streptococcus phage Javan48, complete genome) position: , mismatch: 0, identity: 1.0

gtttttggggcaaaatcaaggcggtgctaa	CRISPR spacer
gtttttggggcaaaatcaaggcggtgctaa	Protospacer
******************************

8. spacer 1.3|856689|30|NZ_CP010319|CRISPRCasFinder,CRT matches to JX409895 (Streptococcus phage JX01, complete genome) position: , mismatch: 0, identity: 1.0

gtttttggggcaaaatcaaggcggtgctaa	CRISPR spacer
gtttttggggcaaaatcaaggcggtgctaa	Protospacer
******************************

9. spacer 1.3|856689|30|NZ_CP010319|CRISPRCasFinder,CRT matches to MH853356 (Streptococcus phage LF2, partial genome) position: , mismatch: 0, identity: 1.0

gtttttggggcaaaatcaaggcggtgctaa	CRISPR spacer
gtttttggggcaaaatcaaggcggtgctaa	Protospacer
******************************

10. spacer 1.3|856689|30|NZ_CP010319|CRISPRCasFinder,CRT matches to AY428505 (Streptococcus agalactiae bacteriophage NCTC11261 lysin PlyGBS gene, complete cds) position: , mismatch: 0, identity: 1.0

gtttttggggcaaaatcaaggcggtgctaa	CRISPR spacer
gtttttggggcaaaatcaaggcggtgctaa	Protospacer
******************************

11. spacer 1.1|856693|26|NZ_CP010319|PILER-CR matches to MK448829 (Streptococcus phage Javan7, complete genome) position: , mismatch: 1, identity: 0.962

ttggggcaaaatcaaggcggtgctaa	CRISPR spacer
ttggggcaaaatcaagggggtgctaa	Protospacer
***************** ********

12. spacer 1.1|856693|26|NZ_CP010319|PILER-CR matches to MK448749 (Streptococcus phage Javan39, complete genome) position: , mismatch: 1, identity: 0.962

ttggggcaaaatcaaggcggtgctaa	CRISPR spacer
ttggggcaaaatcaagggggtgctaa	Protospacer
***************** ********

13. spacer 1.1|856693|26|NZ_CP010319|PILER-CR matches to MH853355 (Streptococcus phage LF1, complete genome) position: , mismatch: 1, identity: 0.962

ttggggcaaaatcaaggcggtgctaa	CRISPR spacer
ttggggcaaaatcaagggggtgctaa	Protospacer
***************** ********

14. spacer 1.1|856693|26|NZ_CP010319|PILER-CR matches to AY149214 (Streptococcus agalactiae bacteriophage B30 peptidoglycan endolysin gene, complete cds) position: , mismatch: 1, identity: 0.962

ttggggcaaaatcaaggcggtgctaa	CRISPR spacer
ttggggcaaaatcaagggggtgctaa	Protospacer
***************** ********

15. spacer 1.1|856693|26|NZ_CP010319|PILER-CR matches to MK448837 (Streptococcus phage Javan10, complete genome) position: , mismatch: 1, identity: 0.962

ttggggcaaaatcaaggcggtgctaa	CRISPR spacer
ttggggcaaaatcaagggggtgctaa	Protospacer
***************** ********

16. spacer 1.1|856693|26|NZ_CP010319|PILER-CR matches to MH853358 (Streptococcus phage LF4, complete genome) position: , mismatch: 1, identity: 0.962

ttggggcaaaatcaaggcggtgctaa	CRISPR spacer
ttggggcaaaatcaagggggtgctaa	Protospacer
***************** ********

17. spacer 1.3|856689|30|NZ_CP010319|CRISPRCasFinder,CRT matches to MK448829 (Streptococcus phage Javan7, complete genome) position: , mismatch: 1, identity: 0.967

gtttttggggcaaaatcaaggcggtgctaa	CRISPR spacer
gtttttggggcaaaatcaagggggtgctaa	Protospacer
********************* ********

18. spacer 1.3|856689|30|NZ_CP010319|CRISPRCasFinder,CRT matches to MK448749 (Streptococcus phage Javan39, complete genome) position: , mismatch: 1, identity: 0.967

gtttttggggcaaaatcaaggcggtgctaa	CRISPR spacer
gtttttggggcaaaatcaagggggtgctaa	Protospacer
********************* ********

19. spacer 1.3|856689|30|NZ_CP010319|CRISPRCasFinder,CRT matches to MH853355 (Streptococcus phage LF1, complete genome) position: , mismatch: 1, identity: 0.967

gtttttggggcaaaatcaaggcggtgctaa	CRISPR spacer
gtttttggggcaaaatcaagggggtgctaa	Protospacer
********************* ********

20. spacer 1.3|856689|30|NZ_CP010319|CRISPRCasFinder,CRT matches to AY149214 (Streptococcus agalactiae bacteriophage B30 peptidoglycan endolysin gene, complete cds) position: , mismatch: 1, identity: 0.967

gtttttggggcaaaatcaaggcggtgctaa	CRISPR spacer
gtttttggggcaaaatcaagggggtgctaa	Protospacer
********************* ********

21. spacer 1.3|856689|30|NZ_CP010319|CRISPRCasFinder,CRT matches to MK448837 (Streptococcus phage Javan10, complete genome) position: , mismatch: 1, identity: 0.967

gtttttggggcaaaatcaaggcggtgctaa	CRISPR spacer
gtttttggggcaaaatcaagggggtgctaa	Protospacer
********************* ********

22. spacer 1.3|856689|30|NZ_CP010319|CRISPRCasFinder,CRT matches to MH853358 (Streptococcus phage LF4, complete genome) position: , mismatch: 1, identity: 0.967

gtttttggggcaaaatcaaggcggtgctaa	CRISPR spacer
gtttttggggcaaaatcaagggggtgctaa	Protospacer
********************* ********

23. spacer 1.5|856821|30|NZ_CP010319|CRISPRCasFinder,CRT matches to MK448796 (Streptococcus phage Javan53, complete genome) position: , mismatch: 2, identity: 0.933

ctttccatccatacgaaccccagttatagt	CRISPR spacer
ctttccatccatacgaaccccaattataat	Protospacer
**********************.*****.*

24. spacer 1.5|856821|30|NZ_CP010319|CRISPRCasFinder,CRT matches to MK448956 (Streptococcus phage Javan48, complete genome) position: , mismatch: 2, identity: 0.933

ctttccatccatacgaaccccagttatagt	CRISPR spacer
ctttccatccatacgaaccccaattgtagt	Protospacer
**********************.**.****

25. spacer 2.4|1887443|30|NZ_CP010319|CRT matches to NC_017273 (Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence) position: , mismatch: 4, identity: 0.867

ggcttctgg--cttaacgtctggtttggcctc	CRISPR spacer
--ctgctggaccttaacgtctggtttgccctc	Protospacer
  ** ****  **************** ****

26. spacer 2.4|1887443|30|NZ_CP010319|CRT matches to NZ_AP019795 (Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence) position: , mismatch: 4, identity: 0.867

ggcttctgg--cttaacgtctggtttggcctc	CRISPR spacer
--ctgctggaccttaacgtctggtttgccctc	Protospacer
  ** ****  **************** ****

27. spacer 2.4|1887443|30|NZ_CP010319|CRT matches to NZ_LR027520 (Thermus thermophilus isolate TTHNAR1 plasmid 4, complete sequence) position: , mismatch: 4, identity: 0.867

ggcttctgg--cttaacgtctggtttggcctc	CRISPR spacer
--ctgctggaccttaacgtctggtttgccctc	Protospacer
  ** ****  **************** ****

28. spacer 2.4|1887443|30|NZ_CP010319|CRT matches to NZ_AP019793 (Thermus thermophilus strain AA2-20 plasmid pAA220, complete sequence) position: , mismatch: 4, identity: 0.867

ggcttctgg--cttaacgtctggtttggcctc	CRISPR spacer
--ctgctggaccttaacgtctggtttgccctc	Protospacer
  ** ****  **************** ****

29. spacer 2.6|1887527|30|NZ_CP010319|CRT matches to NC_017273 (Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence) position: , mismatch: 4, identity: 0.867

ggcttctgg--cttaacgtctggtttggcctc	CRISPR spacer
--ctgctggaccttaacgtctggtttgccctc	Protospacer
  ** ****  **************** ****

30. spacer 2.6|1887527|30|NZ_CP010319|CRT matches to NZ_AP019795 (Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence) position: , mismatch: 4, identity: 0.867

ggcttctgg--cttaacgtctggtttggcctc	CRISPR spacer
--ctgctggaccttaacgtctggtttgccctc	Protospacer
  ** ****  **************** ****

31. spacer 2.6|1887527|30|NZ_CP010319|CRT matches to NZ_LR027520 (Thermus thermophilus isolate TTHNAR1 plasmid 4, complete sequence) position: , mismatch: 4, identity: 0.867

ggcttctgg--cttaacgtctggtttggcctc	CRISPR spacer
--ctgctggaccttaacgtctggtttgccctc	Protospacer
  ** ****  **************** ****

32. spacer 2.6|1887527|30|NZ_CP010319|CRT matches to NZ_AP019793 (Thermus thermophilus strain AA2-20 plasmid pAA220, complete sequence) position: , mismatch: 4, identity: 0.867

ggcttctgg--cttaacgtctggtttggcctc	CRISPR spacer
--ctgctggaccttaacgtctggtttgccctc	Protospacer
  ** ****  **************** ****

33. spacer 1.8|857019|30|NZ_CP010319|CRISPRCasFinder,CRT matches to KU878088 (Bacillus phage AR9, complete genome) position: , mismatch: 5, identity: 0.833

tggtttaat----actgtaaattgttcaatatca	CRISPR spacer
----ttaattccaactgtaaattgtacaatatca	Protospacer
    *****    ************ ********

34. spacer 1.8|857019|30|NZ_CP010319|CRISPRCasFinder,CRT matches to MF360957 (Bacillus virus PBS1, complete genome) position: , mismatch: 5, identity: 0.833

tggtttaat----actgtaaattgttcaatatca	CRISPR spacer
----ttaattccaactgtaaattgtacaatatca	Protospacer
    *****    ************ ********

35. spacer 1.13|856953|29|NZ_CP010319|PILER-CR matches to MN855659 (Bacteriophage sp. isolate 142, complete genome) position: , mismatch: 5, identity: 0.828

attgtgatacagatagtttatacctaaaa	CRISPR spacer
atggcgatacagatagtttataccttgat	Protospacer
** *.******************** .*

36. spacer 1.6|856887|30|NZ_CP010319|CRISPRCasFinder,CRT matches to NZ_CP019583 (Lactobacillus helveticus strain LH5 plasmid pCBTLH5_2, complete sequence) position: , mismatch: 6, identity: 0.8

--aaaccacttgatgctgtatctctcataaaa	CRISPR spacer
tcaaataa--agatgctttatctctcataaaa	Protospacer
  ***. *   ****** **************

37. spacer 1.6|856887|30|NZ_CP010319|CRISPRCasFinder,CRT matches to NZ_AP018406 (Lactobacillus plantarum strain SN35N plasmid pSN35N-1, complete sequence) position: , mismatch: 6, identity: 0.8

--aaaccacttgatgctgtatctctcataaaa	CRISPR spacer
tcaaataa--agatgctttatctctcataaaa	Protospacer
  ***. *   ****** **************

38. spacer 1.6|856887|30|NZ_CP010319|CRISPRCasFinder,CRT matches to NC_014386 (Lactobacillus helveticus R0052 plasmid pIR52-1, complete sequence) position: , mismatch: 6, identity: 0.8

--aaaccacttgatgctgtatctctcataaaa	CRISPR spacer
tcaaataa--agatgctttatctctcataaaa	Protospacer
  ***. *   ****** **************

39. spacer 1.7|856953|30|NZ_CP010319|CRISPRCasFinder,CRT matches to MN855659 (Bacteriophage sp. isolate 142, complete genome) position: , mismatch: 6, identity: 0.8

attgtgatacagatagtttatacctaaaaa	CRISPR spacer
atggcgatacagatagtttataccttgatg	Protospacer
** *.******************** .* .

40. spacer 1.7|856953|30|NZ_CP010319|CRISPRCasFinder,CRT matches to JQ309827 (Enterococcus phage vB_Efae230P-4, complete genome) position: , mismatch: 6, identity: 0.8

attgtgatacagatagtttatacctaaaaa	CRISPR spacer
attgtgatacagacagtttatatatgatta	Protospacer
*************.********. *.*  *

41. spacer 1.7|856953|30|NZ_CP010319|CRISPRCasFinder,CRT matches to NC_049932 (Enterococcus phage vB_EfaP_Ef6.2, complete genome) position: , mismatch: 6, identity: 0.8

attgtgatacagatagtttatacctaaaaa	CRISPR spacer
attgtgacacagacagtttatacatgatta	Protospacer
*******.*****.********* *.*  *

42. spacer 1.7|856953|30|NZ_CP010319|CRISPRCasFinder,CRT matches to NC_049933 (Enterococcus phage vB_EfaP_Ef6.3, complete genome) position: , mismatch: 6, identity: 0.8

attgtgatacagatagtttatacctaaaaa	CRISPR spacer
attgtgatacagatagtctttacatgatta	Protospacer
*****************.* *** *.*  *

43. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to NZ_CP038792 (Escherichia coli strain PF9285 plasmid pDW54_1, complete sequence) position: , mismatch: 6, identity: 0.793

ccctcaatttattgacattattaatataa	CRISPR spacer
aatttaatttattgatattattaaaataa	Protospacer
  .*.**********.******** ****

44. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to NZ_LR792629 (Klebsiella pneumoniae isolate SB5881 plasmid SB5881_II) position: , mismatch: 6, identity: 0.793

ccctcaatttattgacattattaatataa	CRISPR spacer
aatttaatttattgatattattaaaataa	Protospacer
  .*.**********.******** ****

45. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to NZ_FO834905 (Klebsiella pneumoniae strain Kp52.145 plasmid II, complete sequence) position: , mismatch: 6, identity: 0.793

ccctcaatttattgacattattaatataa	CRISPR spacer
aatttaatttattgatattattaaaataa	Protospacer
  .*.**********.******** ****

46. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to NC_019254 (Shigella sp. MO17 plasmid pMO17_54, complete sequence) position: , mismatch: 6, identity: 0.793

ccctcaatttattgacattattaatataa	CRISPR spacer
aatttaatttattgatattattaaaataa	Protospacer
  .*.**********.******** ****

47. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to MH622943 (Myoviridae sp. isolate ctbc_4, complete genome) position: , mismatch: 6, identity: 0.793

ccctcaatttattgacattattaatataa	CRISPR spacer
atataaattcattgacattaataatataa	Protospacer
 . * ****.********** ********

48. spacer 1.10|857150|30|NZ_CP010319|CRISPRCasFinder,CRT matches to MK580972 (Stenotrophomonas phage YB07, complete genome) position: , mismatch: 6, identity: 0.8

aaaaagagccagaaactcaatcagaagaaa	CRISPR spacer
cagaggagccagaatctcaatcagaaggta	Protospacer
 *.*.********* ************. *

49. spacer 1.13|856953|29|NZ_CP010319|PILER-CR matches to JQ309827 (Enterococcus phage vB_Efae230P-4, complete genome) position: , mismatch: 6, identity: 0.793

attgtgatacagatagtttatacctaaaa	CRISPR spacer
attgtgatacagacagtttatatatgatt	Protospacer
*************.********. *.*

50. spacer 1.13|856953|29|NZ_CP010319|PILER-CR matches to NC_049932 (Enterococcus phage vB_EfaP_Ef6.2, complete genome) position: , mismatch: 6, identity: 0.793

attgtgatacagatagtttatacctaaaa	CRISPR spacer
attgtgacacagacagtttatacatgatt	Protospacer
*******.*****.********* *.*

51. spacer 1.13|856953|29|NZ_CP010319|PILER-CR matches to NC_049933 (Enterococcus phage vB_EfaP_Ef6.3, complete genome) position: , mismatch: 6, identity: 0.793

attgtgatacagatagtttatacctaaaa	CRISPR spacer
attgtgatacagatagtctttacatgatt	Protospacer
*****************.* *** *.*

52. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to AP022644 (Bacillus wiedmannii PL1 plasmid pBwiPL1-1 DNA, complete sequence) position: , mismatch: 6, identity: 0.786

ccctcaatttattgacattattaatata	CRISPR spacer
gaatcaatttattgagattataaatatc	Protospacer
   ************ ***** *****

53. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to NZ_CP038792 (Escherichia coli strain PF9285 plasmid pDW54_1, complete sequence) position: , mismatch: 6, identity: 0.786

ccctcaatttattgacattattaatata	CRISPR spacer
aatttaatttattgatattattaaaata	Protospacer
  .*.**********.******** ***

54. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to NZ_CP044263 (Campylobacter armoricus strain CA639 plasmid pCA639-2, complete sequence) position: , mismatch: 6, identity: 0.786

ccctcaatttattgacattattaatata	CRISPR spacer
ttattaatttattaacattattattata	Protospacer
.. *.********.********* ****

55. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to NZ_LR792629 (Klebsiella pneumoniae isolate SB5881 plasmid SB5881_II) position: , mismatch: 6, identity: 0.786

ccctcaatttattgacattattaatata	CRISPR spacer
aatttaatttattgatattattaaaata	Protospacer
  .*.**********.******** ***

56. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to NZ_FO834905 (Klebsiella pneumoniae strain Kp52.145 plasmid II, complete sequence) position: , mismatch: 6, identity: 0.786

ccctcaatttattgacattattaatata	CRISPR spacer
aatttaatttattgatattattaaaata	Protospacer
  .*.**********.******** ***

57. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to NC_019254 (Shigella sp. MO17 plasmid pMO17_54, complete sequence) position: , mismatch: 6, identity: 0.786

ccctcaatttattgacattattaatata	CRISPR spacer
aatttaatttattgatattattaaaata	Protospacer
  .*.**********.******** ***

58. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to MH622943 (Myoviridae sp. isolate ctbc_4, complete genome) position: , mismatch: 6, identity: 0.786

ccctcaatttattgacattattaatata	CRISPR spacer
atataaattcattgacattaataatata	Protospacer
 . * ****.********** *******

59. spacer 1.16|857150|29|NZ_CP010319|PILER-CR matches to MK580972 (Stenotrophomonas phage YB07, complete genome) position: , mismatch: 6, identity: 0.793

aaaaagagccagaaactcaatcagaagaa	CRISPR spacer
cagaggagccagaatctcaatcagaaggt	Protospacer
 *.*.********* ************.

60. spacer 1.7|856953|30|NZ_CP010319|CRISPRCasFinder,CRT matches to MW149109 (Microvirus sp. isolate gila12, complete genome) position: , mismatch: 7, identity: 0.767

attgtgatacagatagtttatacctaaaaa	CRISPR spacer
agagatttatagatagtttatacccaaaaa	Protospacer
*  *   **.**************.*****

61. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to AP022644 (Bacillus wiedmannii PL1 plasmid pBwiPL1-1 DNA, complete sequence) position: , mismatch: 7, identity: 0.759

ccctcaatttattgacattattaatataa	CRISPR spacer
gaatcaatttattgagattataaatatcg	Protospacer
   ************ ***** ***** .

62. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to NZ_CP044263 (Campylobacter armoricus strain CA639 plasmid pCA639-2, complete sequence) position: , mismatch: 7, identity: 0.759

ccctcaatttattgacattattaatataa	CRISPR spacer
ttattaatttattaacattattattatat	Protospacer
.. *.********.********* ****

63. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to NZ_CP009650 (Bacillus pseudomycoides strain BTZ plasmid pBTZ_1, complete sequence) position: , mismatch: 7, identity: 0.759

ccctcaatttattgacattattaatataa	CRISPR spacer
tacagcatttattgatattattaatagaa	Protospacer
. *   *********.********** **

64. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to CP016196 (Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-2, complete sequence) position: , mismatch: 7, identity: 0.759

ccctcaatttattgacattattaatataa	CRISPR spacer
tacagcatttattgatattattaatagaa	Protospacer
. *   *********.********** **

65. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to NC_019507 (Campylobacter phage CP21, complete genome) position: , mismatch: 7, identity: 0.759

ccctcaatttattgacattattaatataa	CRISPR spacer
tcagacatttattgatattattaatatta	Protospacer
.*    *********.*********** *

66. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to MT932329 (Campylobacter phage F379, complete genome) position: , mismatch: 7, identity: 0.759

ccctcaatttattgacattattaatataa	CRISPR spacer
tcagacatttattgatattattaatatta	Protospacer
.*    *********.*********** *

67. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to MN693878 (Marine virus AFVG_250M440, complete genome) position: , mismatch: 7, identity: 0.759

ccctcaatttattgacattattaatataa	CRISPR spacer
gtattgatttattaaaattattaatataa	Protospacer
 . *..*******.* *************

68. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to HE815464 (Campylobacter phage CP21 complete sequence) position: , mismatch: 7, identity: 0.759

ccctcaatttattgacattattaatataa	CRISPR spacer
tcagacatttattgatattattaatatta	Protospacer
.*    *********.*********** *

69. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to FN667788 (Campylobacter phage CP220, complete genome) position: , mismatch: 7, identity: 0.759

ccctcaatttattgacattattaatataa	CRISPR spacer
tcagacatttattgatattattaatatta	Protospacer
.*    *********.*********** *

70. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to NZ_CP053732 (Escherichia coli strain CP55_Sichuan plasmid pCP55-IncFIB, complete sequence) position: , mismatch: 7, identity: 0.759

ccctcaatttattgacattattaatataa	CRISPR spacer
aatttaatttattgatattattaataata	Protospacer
  .*.**********.**********  *

71. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to NZ_CP007625 (Bacillus pseudomycoides strain 219298 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.759

ccctcaatttattgacattattaatataa	CRISPR spacer
tacagcatttattgatattattaatagaa	Protospacer
. *   *********.********** **

72. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to CP043759 (Escherichia coli strain CVM N55972 plasmid pN55972-1, complete sequence) position: , mismatch: 7, identity: 0.759

ccctcaatttattgacattattaatataa	CRISPR spacer
aatttaatttattgatattattaataata	Protospacer
  .*.**********.**********  *

73. spacer 1.10|857150|30|NZ_CP010319|CRISPRCasFinder,CRT matches to MN095772 (Stenotrophomonas phage Moby, complete genome) position: , mismatch: 7, identity: 0.767

aaaaagagccagaaactcaatcagaagaaa	CRISPR spacer
cagcggagccagaatctcaatcagaaggta	Protospacer
 *. .********* ************. *

74. spacer 1.11|857216|30|NZ_CP010319|CRISPRCasFinder,CRT matches to MT375042 (Acinetobacter phage vB_AbaP_Alexa, complete genome) position: , mismatch: 7, identity: 0.767

tggtgttggctgttctgggatgactacgtt	CRISPR spacer
tggtgttggctgttctggaatggtcggctt	Protospacer
******************.***....  **

75. spacer 1.14|857019|29|NZ_CP010319|PILER-CR matches to MK017819 (Clostridium phage CPD4, complete genome) position: , mismatch: 7, identity: 0.759

tggtttaatactgtaaattgttcaatatc	CRISPR spacer
gactttaatactgtaaagtgttcattagg	Protospacer
 . ************** ****** **

76. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to NZ_KX686749 (Campylobacter coli strain Tx40 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.75

ccctcaatttattgacattattaatata	CRISPR spacer
tgatatttttattgaaattattaatata	Protospacer
.  *   ******** ************

77. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to NZ_CP007180 (Campylobacter coli RM5611 plasmid pRM5611_48kb, complete sequence) position: , mismatch: 7, identity: 0.75

ccctcaatttattgacattattaatata	CRISPR spacer
tgatatttttattgaaattattaatata	Protospacer
.  *   ******** ************

78. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to NZ_CP017869 (Campylobacter coli strain MG1116 plasmid pCCDM116L, complete sequence) position: , mismatch: 7, identity: 0.75

ccctcaatttattgacattattaatata	CRISPR spacer
tgatatttttattgaaattattaatata	Protospacer
.  *   ******** ************

79. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to NZ_CP044166 (Campylobacter coli strain AR-0416 plasmid pAR-0416) position: , mismatch: 7, identity: 0.75

ccctcaatttattgacattattaatata	CRISPR spacer
tgatatttttattgaaattattaatata	Protospacer
.  *   ******** ************

80. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to NZ_CP023544 (Campylobacter jejuni strain CFSAN032806 plasmid pCFSAN032806, complete sequence) position: , mismatch: 7, identity: 0.75

ccctcaatttattgacattattaatata	CRISPR spacer
tgatatttttattgaaattattaatata	Protospacer
.  *   ******** ************

81. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to CP002030 (Campylobacter jejuni subsp. jejuni ICDCCJ07001 plasmid pTet, complete sequence) position: , mismatch: 7, identity: 0.75

ccctcaatttattgacattattaatata	CRISPR spacer
tgatatttttattgaaattattaatata	Protospacer
.  *   ******** ************

82. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to NZ_CP017419 (Campylobacter jejuni strain MTVDSCj16 plasmid pMTVDSCj16-1, complete sequence) position: , mismatch: 7, identity: 0.75

ccctcaatttattgacattattaatata	CRISPR spacer
tgatatttttattgaaattattaatata	Protospacer
.  *   ******** ************

83. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to NZ_CP017866 (Campylobacter coli strain YF2105 plasmid pCCDM105L, complete sequence) position: , mismatch: 7, identity: 0.75

ccctcaatttattgacattattaatata	CRISPR spacer
tgatatttttattgaaattattaatata	Protospacer
.  *   ******** ************

84. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to NZ_CP017879 (Campylobacter coli strain BG2108 plasmid pCCDM108L, complete sequence) position: , mismatch: 7, identity: 0.75

ccctcaatttattgacattattaatata	CRISPR spacer
tgatatttttattgaaattattaatata	Protospacer
.  *   ******** ************

85. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to NZ_CP017416 (Campylobacter jejuni strain MTVDSCj07 plasmid pMTVDSCj07-1, complete sequence) position: , mismatch: 7, identity: 0.75

ccctcaatttattgacattattaatata	CRISPR spacer
tgatatttttattgaaattattaatata	Protospacer
.  *   ******** ************

86. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to NZ_CP017872 (Campylobacter coli strain BP3183 plasmid pCCDM183, complete sequence) position: , mismatch: 7, identity: 0.75

ccctcaatttattgacattattaatata	CRISPR spacer
tgatatttttattgaaattattaatata	Protospacer
.  *   ******** ************

87. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to NZ_CP020775 (Campylobacter jejuni strain YH002 plasmid pCJP002, complete sequence) position: , mismatch: 7, identity: 0.75

ccctcaatttattgacattattaatata	CRISPR spacer
tgatatttttattgaaattattaatata	Protospacer
.  *   ******** ************

88. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to NC_022355 (Campylobacter coli CVM N29710 plasmid pN29710-1, complete sequence) position: , mismatch: 7, identity: 0.75

ccctcaatttattgacattattaatata	CRISPR spacer
tgatatttttattgaaattattaatata	Protospacer
.  *   ******** ************

89. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to NC_019507 (Campylobacter phage CP21, complete genome) position: , mismatch: 7, identity: 0.75

ccctcaatttattgacattattaatata	CRISPR spacer
tcagacatttattgatattattaatatt	Protospacer
.*    *********.***********

90. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to MT932329 (Campylobacter phage F379, complete genome) position: , mismatch: 7, identity: 0.75

ccctcaatttattgacattattaatata	CRISPR spacer
tcagacatttattgatattattaatatt	Protospacer
.*    *********.***********

91. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to HE815464 (Campylobacter phage CP21 complete sequence) position: , mismatch: 7, identity: 0.75

ccctcaatttattgacattattaatata	CRISPR spacer
tcagacatttattgatattattaatatt	Protospacer
.*    *********.***********

92. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to FN667788 (Campylobacter phage CP220, complete genome) position: , mismatch: 7, identity: 0.75

ccctcaatttattgacattattaatata	CRISPR spacer
tcagacatttattgatattattaatatt	Protospacer
.*    *********.***********

93. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to NZ_CP053732 (Escherichia coli strain CP55_Sichuan plasmid pCP55-IncFIB, complete sequence) position: , mismatch: 7, identity: 0.75

ccctcaatttattgacattattaatata	CRISPR spacer
aatttaatttattgatattattaataat	Protospacer
  .*.**********.**********

94. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 7, identity: 0.75

ccctcaatttattgacattattaatata	CRISPR spacer
aaaaaaaattattgaaattattaatata	Protospacer
     ** ******* ************

95. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to NZ_CP045793 (Campylobacter coli strain CFSAN032805 plasmid p1CFSAN032805, complete sequence) position: , mismatch: 7, identity: 0.75

ccctcaatttattgacattattaatata	CRISPR spacer
tgatatttttattgaaattattaatata	Protospacer
.  *   ******** ************

96. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to NC_017282 (Campylobacter jejuni subsp. jejuni S3 plasmid pTet, complete sequence) position: , mismatch: 7, identity: 0.75

ccctcaatttattgacattattaatata	CRISPR spacer
tgatatttttattgaaattattaatata	Protospacer
.  *   ******** ************

97. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to CP047483 (Campylobacter jejuni strain CFSAN096297 plasmid CFSAN096297, complete sequence) position: , mismatch: 7, identity: 0.75

ccctcaatttattgacattattaatata	CRISPR spacer
tgatatttttattgaaattattaatata	Protospacer
.  *   ******** ************

98. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to NZ_CP023546 (Campylobacter coli strain CFSAN032805 plasmid pCFSAN032805_1, complete sequence) position: , mismatch: 7, identity: 0.75

ccctcaatttattgacattattaatata	CRISPR spacer
tgatatttttattgaaattattaatata	Protospacer
.  *   ******** ************

99. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to NZ_CP017026 (Campylobacter coli plasmid pCC14983A-1, complete sequence) position: , mismatch: 7, identity: 0.75

ccctcaatttattgacattattaatata	CRISPR spacer
tgatatttttattgaaattattaatata	Protospacer
.  *   ******** ************

100. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to CP043759 (Escherichia coli strain CVM N55972 plasmid pN55972-1, complete sequence) position: , mismatch: 7, identity: 0.75

ccctcaatttattgacattattaatata	CRISPR spacer
aatttaatttattgatattattaataat	Protospacer
  .*.**********.**********

101. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to NZ_CP017877 (Campylobacter coli strain ZV1224 plasmid pCCDM224L, complete sequence) position: , mismatch: 7, identity: 0.75

ccctcaatttattgacattattaatata	CRISPR spacer
tgatatttttattgaaattattaatata	Protospacer
.  *   ******** ************

102. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to NZ_CP017861 (Campylobacter jejuni strain TS1218 plasmid pCJDM218, complete sequence) position: , mismatch: 7, identity: 0.75

ccctcaatttattgacattattaatata	CRISPR spacer
tgatatttttattgaaattattaatata	Protospacer
.  *   ******** ************

103. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to NZ_MK541988 (Campylobacter coli strain CVM N61740F plasmid pN61740F, complete sequence) position: , mismatch: 7, identity: 0.75

ccctcaatttattgacattattaatata	CRISPR spacer
tgatatttttattgaaattattaatata	Protospacer
.  *   ******** ************

104. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to NZ_MK541989 (Campylobacter coli strain CVM N61925F plasmid pN61925F, complete sequence) position: , mismatch: 7, identity: 0.75

ccctcaatttattgacattattaatata	CRISPR spacer
tgatatttttattgaaattattaatata	Protospacer
.  *   ******** ************

105. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to NC_022354 (Campylobacter jejuni subsp. jejuni 00-2544 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.75

ccctcaatttattgacattattaatata	CRISPR spacer
tgatatttttattgaaattattaatata	Protospacer
.  *   ******** ************

106. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to AP014085 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C2A-MedDCM-OCT-S36-C93, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.75

ccctcaatttattgacattattaatata	CRISPR spacer
gactccatttattgagattattaattgt	Protospacer
  *** ********* *********

107. spacer 1.16|857150|29|NZ_CP010319|PILER-CR matches to MN095772 (Stenotrophomonas phage Moby, complete genome) position: , mismatch: 7, identity: 0.759

aaaaagagccagaaactcaatcagaagaa	CRISPR spacer
cagcggagccagaatctcaatcagaaggt	Protospacer
 *. .********* ************.

108. spacer 1.17|857216|29|NZ_CP010319|PILER-CR matches to MT375042 (Acinetobacter phage vB_AbaP_Alexa, complete genome) position: , mismatch: 7, identity: 0.759

tggtgttggctgttctgggatgactacgt	CRISPR spacer
tggtgttggctgttctggaatggtcggct	Protospacer
******************.***....  *

109. spacer 1.8|857019|30|NZ_CP010319|CRISPRCasFinder,CRT matches to MK017819 (Clostridium phage CPD4, complete genome) position: , mismatch: 8, identity: 0.733

tggtttaatactgtaaattgttcaatatca	CRISPR spacer
gactttaatactgtaaagtgttcattaggc	Protospacer
 . ************** ****** **

110. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to NZ_KX686749 (Campylobacter coli strain Tx40 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.724

ccctcaatttattgacattattaatataa	CRISPR spacer
tgatatttttattgaaattattaatatat	Protospacer
.  *   ******** ************

111. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to KM659092 (Ochrobactrum sp. LM19 plasmid pLM19O2, complete sequence) position: , mismatch: 8, identity: 0.724

ccctcaatttattgacattattaatataa	CRISPR spacer
aatggaatttattgacatgattaataaga	Protospacer
  .  ************* ******* .*

112. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to NZ_CP007180 (Campylobacter coli RM5611 plasmid pRM5611_48kb, complete sequence) position: , mismatch: 8, identity: 0.724

ccctcaatttattgacattattaatataa	CRISPR spacer
tgatatttttattgaaattattaatatat	Protospacer
.  *   ******** ************

113. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to NZ_CP017869 (Campylobacter coli strain MG1116 plasmid pCCDM116L, complete sequence) position: , mismatch: 8, identity: 0.724

ccctcaatttattgacattattaatataa	CRISPR spacer
tgatatttttattgaaattattaatatat	Protospacer
.  *   ******** ************

114. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to NZ_CP044166 (Campylobacter coli strain AR-0416 plasmid pAR-0416) position: , mismatch: 8, identity: 0.724

ccctcaatttattgacattattaatataa	CRISPR spacer
tgatatttttattgaaattattaatatat	Protospacer
.  *   ******** ************

115. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to NZ_CP023544 (Campylobacter jejuni strain CFSAN032806 plasmid pCFSAN032806, complete sequence) position: , mismatch: 8, identity: 0.724

ccctcaatttattgacattattaatataa	CRISPR spacer
tgatatttttattgaaattattaatatat	Protospacer
.  *   ******** ************

116. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to CP002030 (Campylobacter jejuni subsp. jejuni ICDCCJ07001 plasmid pTet, complete sequence) position: , mismatch: 8, identity: 0.724

ccctcaatttattgacattattaatataa	CRISPR spacer
tgatatttttattgaaattattaatatat	Protospacer
.  *   ******** ************

117. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to NZ_CP017419 (Campylobacter jejuni strain MTVDSCj16 plasmid pMTVDSCj16-1, complete sequence) position: , mismatch: 8, identity: 0.724

ccctcaatttattgacattattaatataa	CRISPR spacer
tgatatttttattgaaattattaatatat	Protospacer
.  *   ******** ************

118. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to NZ_CP017866 (Campylobacter coli strain YF2105 plasmid pCCDM105L, complete sequence) position: , mismatch: 8, identity: 0.724

ccctcaatttattgacattattaatataa	CRISPR spacer
tgatatttttattgaaattattaatatat	Protospacer
.  *   ******** ************

119. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to NZ_CP017879 (Campylobacter coli strain BG2108 plasmid pCCDM108L, complete sequence) position: , mismatch: 8, identity: 0.724

ccctcaatttattgacattattaatataa	CRISPR spacer
tgatatttttattgaaattattaatatat	Protospacer
.  *   ******** ************

120. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to NZ_CP017416 (Campylobacter jejuni strain MTVDSCj07 plasmid pMTVDSCj07-1, complete sequence) position: , mismatch: 8, identity: 0.724

ccctcaatttattgacattattaatataa	CRISPR spacer
tgatatttttattgaaattattaatatat	Protospacer
.  *   ******** ************

121. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to NZ_CP017872 (Campylobacter coli strain BP3183 plasmid pCCDM183, complete sequence) position: , mismatch: 8, identity: 0.724

ccctcaatttattgacattattaatataa	CRISPR spacer
tgatatttttattgaaattattaatatat	Protospacer
.  *   ******** ************

122. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to NZ_CP020775 (Campylobacter jejuni strain YH002 plasmid pCJP002, complete sequence) position: , mismatch: 8, identity: 0.724

ccctcaatttattgacattattaatataa	CRISPR spacer
tgatatttttattgaaattattaatatat	Protospacer
.  *   ******** ************

123. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to NC_022355 (Campylobacter coli CVM N29710 plasmid pN29710-1, complete sequence) position: , mismatch: 8, identity: 0.724

ccctcaatttattgacattattaatataa	CRISPR spacer
tgatatttttattgaaattattaatatat	Protospacer
.  *   ******** ************

124. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 8, identity: 0.724

ccctcaatttattgacattattaatataa	CRISPR spacer
aaaaaaaattattgaaattattaatatac	Protospacer
     ** ******* ************

125. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to NZ_CP045793 (Campylobacter coli strain CFSAN032805 plasmid p1CFSAN032805, complete sequence) position: , mismatch: 8, identity: 0.724

ccctcaatttattgacattattaatataa	CRISPR spacer
tgatatttttattgaaattattaatatat	Protospacer
.  *   ******** ************

126. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to NC_017282 (Campylobacter jejuni subsp. jejuni S3 plasmid pTet, complete sequence) position: , mismatch: 8, identity: 0.724

ccctcaatttattgacattattaatataa	CRISPR spacer
tgatatttttattgaaattattaatatat	Protospacer
.  *   ******** ************

127. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to CP047483 (Campylobacter jejuni strain CFSAN096297 plasmid CFSAN096297, complete sequence) position: , mismatch: 8, identity: 0.724

ccctcaatttattgacattattaatataa	CRISPR spacer
tgatatttttattgaaattattaatatat	Protospacer
.  *   ******** ************

128. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to NZ_CP023546 (Campylobacter coli strain CFSAN032805 plasmid pCFSAN032805_1, complete sequence) position: , mismatch: 8, identity: 0.724

ccctcaatttattgacattattaatataa	CRISPR spacer
tgatatttttattgaaattattaatatat	Protospacer
.  *   ******** ************

129. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to NZ_CP017026 (Campylobacter coli plasmid pCC14983A-1, complete sequence) position: , mismatch: 8, identity: 0.724

ccctcaatttattgacattattaatataa	CRISPR spacer
tgatatttttattgaaattattaatatat	Protospacer
.  *   ******** ************

130. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to NZ_CP017877 (Campylobacter coli strain ZV1224 plasmid pCCDM224L, complete sequence) position: , mismatch: 8, identity: 0.724

ccctcaatttattgacattattaatataa	CRISPR spacer
tgatatttttattgaaattattaatatat	Protospacer
.  *   ******** ************

131. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to NZ_CP017861 (Campylobacter jejuni strain TS1218 plasmid pCJDM218, complete sequence) position: , mismatch: 8, identity: 0.724

ccctcaatttattgacattattaatataa	CRISPR spacer
tgatatttttattgaaattattaatatat	Protospacer
.  *   ******** ************

132. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to NZ_MK541988 (Campylobacter coli strain CVM N61740F plasmid pN61740F, complete sequence) position: , mismatch: 8, identity: 0.724

ccctcaatttattgacattattaatataa	CRISPR spacer
tgatatttttattgaaattattaatatat	Protospacer
.  *   ******** ************

133. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to NZ_MK541989 (Campylobacter coli strain CVM N61925F plasmid pN61925F, complete sequence) position: , mismatch: 8, identity: 0.724

ccctcaatttattgacattattaatataa	CRISPR spacer
tgatatttttattgaaattattaatatat	Protospacer
.  *   ******** ************

134. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to NC_022354 (Campylobacter jejuni subsp. jejuni 00-2544 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.724

ccctcaatttattgacattattaatataa	CRISPR spacer
tgatatttttattgaaattattaatatat	Protospacer
.  *   ******** ************

135. spacer 1.9|857085|29|NZ_CP010319|CRISPRCasFinder,CRT matches to AP014085 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C2A-MedDCM-OCT-S36-C93, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.724

ccctcaatttattgacattattaatataa	CRISPR spacer
gactccatttattgagattattaattgtt	Protospacer
  *** ********* *********

136. spacer 1.14|857019|29|NZ_CP010319|PILER-CR matches to MN417334 (Clostridium phage CPAS-15, complete genome) position: , mismatch: 8, identity: 0.724

tggtttaatactgtaaattgttcaatatc	CRISPR spacer
gatcttaatactgtaaagtgttcattagg	Protospacer
 . .************* ****** **

137. spacer 1.14|857019|29|NZ_CP010319|PILER-CR matches to KY206887 (Clostridium phage Clo-PEP-1, complete genome) position: , mismatch: 8, identity: 0.724

tggtttaatactgtaaattgttcaatatc	CRISPR spacer
gaccttaatactgtaaagtgttcattagg	Protospacer
 . .************* ****** **

138. spacer 1.14|857019|29|NZ_CP010319|PILER-CR matches to MF001357 (Clostridium phage CP3, partial genome) position: , mismatch: 8, identity: 0.724

tggtttaatactgtaaattgttcaatatc	CRISPR spacer
gaccttaatactgtaaagtgttcattagg	Protospacer
 . .************* ****** **

139. spacer 1.15|857085|28|NZ_CP010319|PILER-CR matches to KM659092 (Ochrobactrum sp. LM19 plasmid pLM19O2, complete sequence) position: , mismatch: 8, identity: 0.714

ccctcaatttattgacattattaatata	CRISPR spacer
aatggaatttattgacatgattaataag	Protospacer
  .  ************* ******* .

140. spacer 1.8|857019|30|NZ_CP010319|CRISPRCasFinder,CRT matches to MN417334 (Clostridium phage CPAS-15, complete genome) position: , mismatch: 9, identity: 0.7

tggtttaatactgtaaattgttcaatatca	CRISPR spacer
gatcttaatactgtaaagtgttcattaggc	Protospacer
 . .************* ****** **

141. spacer 1.8|857019|30|NZ_CP010319|CRISPRCasFinder,CRT matches to KY206887 (Clostridium phage Clo-PEP-1, complete genome) position: , mismatch: 9, identity: 0.7

tggtttaatactgtaaattgttcaatatca	CRISPR spacer
gaccttaatactgtaaagtgttcattaggc	Protospacer
 . .************* ****** **

142. spacer 1.8|857019|30|NZ_CP010319|CRISPRCasFinder,CRT matches to MF001357 (Clostridium phage CP3, partial genome) position: , mismatch: 9, identity: 0.7

tggtttaatactgtaaattgttcaatatca	CRISPR spacer
gaccttaatactgtaaagtgttcattaggc	Protospacer
 . .************* ****** **

143. spacer 1.10|857150|30|NZ_CP010319|CRISPRCasFinder,CRT matches to MN693441 (Marine virus AFVG_25M481, complete genome) position: , mismatch: 9, identity: 0.7

aaaaagagccagaaactcaatcagaagaaa	CRISPR spacer
ccatcctatcacaaactcaatcagaagaaa	Protospacer
  *    ..** ******************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

34435 : 42541

Mollivirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000638885.1\|34435_35890_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.2e-54	32.7
WP_001291326.1\|35917_36940_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SE90	Cyanophage	6.9e-63	44.3
WP_000685110.1\|37107_37656_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.4e-25	35.6
WP_000780018.1\|37678_38431_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000166556.1\|38450_39998_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	8.7e-78	48.9
WP_001045907.1\|40190_41090_+	peptidoglycan DD-metalloendopeptidase family protein	A0A221J6U0	Arthrobacter_phage	4.1e-19	45.9
WP_000783420.1\|41236_42541_+	LysM peptidoglycan-binding domain-containing protein	F1B2Q4	Tsukamurella_phage	3.0e-10	35.8

DBSCAN-SWA_2

563326 : 573291

Streptococcus_phage(91.67%)

integrase

attL 558578:558593|attR 575482:575497

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
558578:558593	attL	NA	NA	NA	NA
WP_000137373.1\|563326_563782_-	YueI family protein	W6LLD2	Streptococcus_phage	7.8e-27	48.9
WP_000022832.1\|563979_565287_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	1.5e-235	95.4
WP_001021808.1\|565445_566609_-\|integrase	site-specific integrase	A0A1X9I6A9	Streptococcus_phage	4.7e-209	93.0
WP_000528105.1\|566681_567197_-	helix-turn-helix transcriptional regulator	Q9AZN3	Lactococcus_phage	2.6e-10	47.9
WP_000587633.1\|567348_567537_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_001218610.1\|567713_567989_+	hypothetical protein	A0A1X9I5W5	Streptococcus_phage	2.7e-38	90.1
WP_000998226.1\|567978_568182_+	hypothetical protein	A0A1X9I5V6	Streptococcus_phage	8.9e-23	85.1
WP_017647089.1\|568174_568330_+	hypothetical protein	NA	NA	NA	NA
WP_000190301.1\|568389_568656_+	hypothetical protein	A0A1X9I6M4	Streptococcus_phage	6.1e-40	96.6
WP_017647090.1\|568666_568825_+	hypothetical protein	A0A1X9I5Z1	Streptococcus_phage	7.1e-20	88.5
WP_000237852.1\|568831_569002_+	hypothetical protein	K4JU69	Streptococcus_phage	8.8e-08	73.0
WP_001883560.1\|569015_569804_+	DnaD domain protein	A0A1X9I617	Streptococcus_phage	4.2e-129	87.5
WP_000957430.1\|569819_570665_+	ATP-binding protein	A0A1X9I6C4	Streptococcus_phage	4.5e-145	92.1
WP_000273649.1\|570922_571105_+	hypothetical protein	NA	NA	NA	NA
WP_000213653.1\|571202_571781_+	hypothetical protein	NA	NA	NA	NA
WP_000639503.1\|571777_572065_+	hypothetical protein	NA	NA	NA	NA
WP_000918211.1\|572103_572532_+	hypothetical protein	NA	NA	NA	NA
WP_000624041.1\|572524_572851_+	hypothetical protein	NA	NA	NA	NA
WP_000162609.1\|572868_573291_+	hypothetical protein	K4JTJ9	Streptococcus_phage	1.1e-30	51.6
575482:575497	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1500597 : 1511331

Streptococcus_phage(84.62%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000767486.1\|1500597_1501425_+	exodeoxyribonuclease III	M1PSC0	Streptococcus_phage	1.1e-124	78.0
WP_000287943.1\|1501465_1501822_-	arsenate reductase family protein	M1PLC0	Streptococcus_phage	5.2e-42	72.6
WP_000966772.1\|1501823_1502300_-	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	7.1e-39	50.9
WP_000232151.1\|1502355_1503537_-	phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	3.1e-168	75.6
WP_001167084.1\|1503599_1504148_-	GNAT family N-acetyltransferase	M1PSC3	Streptococcus_phage	2.2e-55	59.0
WP_000158399.1\|1504215_1505307_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	1.7e-165	78.0
WP_000603273.1\|1505439_1506075_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_144416974.1\|1506387_1507215_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	3.4e-105	71.7
WP_000358198.1\|1507214_1507541_-	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	3.2e-30	61.1
WP_000364568.1\|1507571_1508435_-	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	2.5e-74	50.0
WP_000715591.1\|1508454_1509090_-	dTMP kinase	M1PSC7	Streptococcus_phage	4.9e-67	61.1
WP_001144250.1\|1509178_1509838_-	CBS domain-containing protein	M1NSC5	Streptococcus_phage	3.6e-65	56.9
WP_000178146.1\|1509856_1510567_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.7e-18	28.5
WP_001185985.1\|1510566_1511331_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.6e-14	24.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP010319

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection