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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP012363 Oblitimonas alkaliphila strain E1086 chromosome, complete genome 2 crisprs DEDDh,WYL,cas14j,c2c9_V-U4,cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,csa3,DinG 0 9 2 0

Results visualization

1. NZ_CP012363
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012363_1 879124-879253 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012363_2 1489560-1491479 TypeI-E I-B,III-A,III-B
31 spacers
cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP012363_2 2.1|1489588|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT 1489588-1489620 33 KX066068 Pseudomonas phage VSW-3, complete genome 31001-31033 7 0.788
NZ_CP012363_2 2.3|1489710|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT 1489710-1489742 33 NC_014035 Rhodobacter capsulatus SB 1003 plasmid pRCB133, complete sequence 52680-52712 7 0.788
NZ_CP012363_2 2.19|1490687|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT 1490687-1490719 33 MK448806 Streptococcus phage Javan565, complete genome 22743-22775 7 0.788
NZ_CP012363_2 2.11|1490198|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT 1490198-1490230 33 KC170282 Uncultured bacterium plasmid pMBUI6, complete sequence 36602-36634 8 0.758
NZ_CP012363_2 2.14|1490382|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT 1490382-1490414 33 NC_019509 Cronobacter phage ESP2949-1, complete genome 34589-34621 8 0.758
NZ_CP012363_2 2.14|1490382|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT 1490382-1490414 33 MH845412 Cronobacter phage CS01, complete genome 39051-39083 8 0.758
NZ_CP012363_2 2.14|1490382|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT 1490382-1490414 33 CP015514 Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence 778151-778183 8 0.758
NZ_CP012363_2 2.1|1489588|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT 1489588-1489620 33 NZ_CP018784 Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence 423206-423238 9 0.727
NZ_CP012363_2 2.5|1489832|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT 1489832-1489864 33 KC292027 Halovirus HCTV-5, complete genome 25120-25152 9 0.727
NZ_CP012363_2 2.14|1490382|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT 1490382-1490414 33 MN019128 Escherichia phage Henu7, complete genome 14402-14434 9 0.727
NZ_CP012363_2 2.19|1490687|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT 1490687-1490719 33 MH648987 Siphoviridae sp. isolate ctcj11, complete genome 29668-29700 9 0.727
NZ_CP012363_2 2.24|1490992|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT 1490992-1491024 33 NZ_CP014649 Klebsiella pneumoniae strain KPNIH36 plasmid pKPN-fff, complete sequence 53051-53083 9 0.727
NZ_CP012363_2 2.24|1490992|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT 1490992-1491024 33 NC_021654 Klebsiella pneumoniae plasmid pKN-LS6, complete sequence 188319-188351 9 0.727
NZ_CP012363_2 2.24|1490992|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT 1490992-1491024 33 NZ_CP007729 Klebsiella pneumoniae subsp. pneumoniae KPNIH10 plasmid pKPN-498, complete sequence 152893-152925 9 0.727
NZ_CP012363_2 2.24|1490992|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT 1490992-1491024 33 NZ_CP037929 Klebsiella pneumoniae subsp. pneumoniae strain KP-8788 plasmid pKPN-IT-8788, complete sequence 256999-257031 9 0.727
NZ_CP012363_2 2.24|1490992|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT 1490992-1491024 33 MN922301 Klebsiella pneumoniae strain KP-14159 plasmid pKPN-IT-14159, complete sequence 256999-257031 9 0.727
NZ_CP012363_2 2.24|1490992|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT 1490992-1491024 33 MK422448 Klebsiella phage ST512-KPC3phi13.3, complete genome 28666-28698 9 0.727
NZ_CP012363_2 2.4|1489771|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT 1489771-1489803 33 NC_022049 Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence 390735-390767 10 0.697
NZ_CP012363_2 2.4|1489771|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT 1489771-1489803 33 NC_022050 Paracoccus aminophilus JCM 7686 plasmid pAMI8, complete sequence 114580-114612 10 0.697
NZ_CP012363_2 2.27|1491175|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT 1491175-1491207 33 NZ_CP035564 Lactobacillus paracasei strain SRCM103299 plasmid unnamed1 18979-19011 10 0.697
NZ_CP012363_2 2.27|1491175|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT 1491175-1491207 33 NZ_CP017262 Lactobacillus paracasei strain FAM18149 plasmid pFAM18149.21, complete sequence 62108-62140 10 0.697
NZ_CP012363_2 2.27|1491175|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT 1491175-1491207 33 NZ_CP014988 Lactobacillus paracasei strain IIA plasmid unnamed3, complete sequence 63032-63064 10 0.697

1. spacer 2.1|1489588|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT matches to KX066068 (Pseudomonas phage VSW-3, complete genome) position: , mismatch: 7, identity: 0.788

tgggccgactgcacgagatgcttgcagaggata	CRISPR spacer
tgggccgactgcacgagatgttcgcgcagtacc	Protospacer
********************.*.**. ** *. 

2. spacer 2.3|1489710|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT matches to NC_014035 (Rhodobacter capsulatus SB 1003 plasmid pRCB133, complete sequence) position: , mismatch: 7, identity: 0.788

cggaatactgtcgtcatcaaagccgccatgcca	CRISPR spacer
cgggacgatgtcgtcatcaaggcctccatgcct	Protospacer
***.*.. ************.*** ******* 

3. spacer 2.19|1490687|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT matches to MK448806 (Streptococcus phage Javan565, complete genome) position: , mismatch: 7, identity: 0.788

ccacctgatcggcatcagctaggatttcgtctt	CRISPR spacer
caatctgatcggcatcaactacgatttcagcat	Protospacer
* *.*************.*** ******. * *

4. spacer 2.11|1490198|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT matches to KC170282 (Uncultured bacterium plasmid pMBUI6, complete sequence) position: , mismatch: 8, identity: 0.758

tcaggcagggttacagcatcgactgcgatcatg	CRISPR spacer
acgggcagggttacggcatcgagtgcgacagta	Protospacer
 *.***********.******* *****. .*.

5. spacer 2.14|1490382|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT matches to NC_019509 (Cronobacter phage ESP2949-1, complete genome) position: , mismatch: 8, identity: 0.758

cattaagtctttcatgattttccccttttggtt	CRISPR spacer
aacaatgcgtttcatgattttcccctttaagtt	Protospacer
 *. * *. ******************* .***

6. spacer 2.14|1490382|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT matches to MH845412 (Cronobacter phage CS01, complete genome) position: , mismatch: 8, identity: 0.758

cattaagtctttcatgattttccccttttggtt	CRISPR spacer
aacaatgcgtttcatgattttcccctttaagtt	Protospacer
 *. * *. ******************* .***

7. spacer 2.14|1490382|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT matches to CP015514 (Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

cattaagtctttcatgattttccccttttggtt	CRISPR spacer
atgtaattctttcatgattttccctttattttt	Protospacer
   *** *****************.** *  **

8. spacer 2.1|1489588|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018784 (Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence) position: , mismatch: 9, identity: 0.727

tgggccgactgcacgagatgcttgcagaggata	CRISPR spacer
tgtcgcgacggcacgagctgcttgcagagtgac	Protospacer
**   **** ******* *********** .  

9. spacer 2.5|1489832|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT matches to KC292027 (Halovirus HCTV-5, complete genome) position: , mismatch: 9, identity: 0.727

cgttattactcatagttatagctccatggcggc	CRISPR spacer
aaatcttactcatcgttatcgctccatggaacc	Protospacer
 . * ******** ***** ********* . *

10. spacer 2.14|1490382|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT matches to MN019128 (Escherichia phage Henu7, complete genome) position: , mismatch: 9, identity: 0.727

cattaagtctttcatgattttccccttttggtt	CRISPR spacer
acggataactttcatgattttcccctttcgttt	Protospacer
    * . ********************.* **

11. spacer 2.19|1490687|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT matches to MH648987 (Siphoviridae sp. isolate ctcj11, complete genome) position: , mismatch: 9, identity: 0.727

ccacctgatcggcatcagctaggatttcgtctt	CRISPR spacer
tacggcgctcagcatcagctaggatttcgtcta	Protospacer
.    .* **.********************* 

12. spacer 2.24|1490992|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014649 (Klebsiella pneumoniae strain KPNIH36 plasmid pKPN-fff, complete sequence) position: , mismatch: 9, identity: 0.727

cttagcctcaagctttgcgtctagctcggcttc	CRISPR spacer
ctcccgctcaagctctgcgtccagctcggcgat	Protospacer
**.   ********.******.********  .

13. spacer 2.24|1490992|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT matches to NC_021654 (Klebsiella pneumoniae plasmid pKN-LS6, complete sequence) position: , mismatch: 9, identity: 0.727

cttagcctcaagctttgcgtctagctcggcttc	CRISPR spacer
ctcccgctcaagctctgcgtccagctcggcgat	Protospacer
**.   ********.******.********  .

14. spacer 2.24|1490992|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007729 (Klebsiella pneumoniae subsp. pneumoniae KPNIH10 plasmid pKPN-498, complete sequence) position: , mismatch: 9, identity: 0.727

cttagcctcaagctttgcgtctagctcggcttc	CRISPR spacer
ctcccgctcaagctctgcgtccagctcggcgat	Protospacer
**.   ********.******.********  .

15. spacer 2.24|1490992|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP037929 (Klebsiella pneumoniae subsp. pneumoniae strain KP-8788 plasmid pKPN-IT-8788, complete sequence) position: , mismatch: 9, identity: 0.727

cttagcctcaagctttgcgtctagctcggcttc	CRISPR spacer
ctcccgctcaagctctgcgtccagctcggcgat	Protospacer
**.   ********.******.********  .

16. spacer 2.24|1490992|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT matches to MN922301 (Klebsiella pneumoniae strain KP-14159 plasmid pKPN-IT-14159, complete sequence) position: , mismatch: 9, identity: 0.727

cttagcctcaagctttgcgtctagctcggcttc	CRISPR spacer
ctcccgctcaagctctgcgtccagctcggcgat	Protospacer
**.   ********.******.********  .

17. spacer 2.24|1490992|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT matches to MK422448 (Klebsiella phage ST512-KPC3phi13.3, complete genome) position: , mismatch: 9, identity: 0.727

cttagcctcaagctttgcgtctagctcggcttc	CRISPR spacer
ctcccgctcaagctctgcgtccagctcggcgat	Protospacer
**.   ********.******.********  .

18. spacer 2.4|1489771|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT matches to NC_022049 (Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence) position: , mismatch: 10, identity: 0.697

cacttatggtgatccgcgaaagctgcgtggaag	CRISPR spacer
ccgccccggtgatccgcgaaagcggcggggatc	Protospacer
*  .. .**************** *** ***  

19. spacer 2.4|1489771|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT matches to NC_022050 (Paracoccus aminophilus JCM 7686 plasmid pAMI8, complete sequence) position: , mismatch: 10, identity: 0.697

cacttatggtgatccgcgaaagctgcgtggaag	CRISPR spacer
tgaaatcggtgttccgcgaaagctgcgaggacg	Protospacer
..    .**** *************** *** *

20. spacer 2.27|1491175|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035564 (Lactobacillus paracasei strain SRCM103299 plasmid unnamed1) position: , mismatch: 10, identity: 0.697

cgctttaaatgatccgatcgggtcttcaagcac	CRISPR spacer
ctctttaaatgacccgttcgggtcttattttgg	Protospacer
* **********.*** *********    .. 

21. spacer 2.27|1491175|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017262 (Lactobacillus paracasei strain FAM18149 plasmid pFAM18149.21, complete sequence) position: , mismatch: 10, identity: 0.697

cgctttaaatgatccgatcgggtcttcaagcac	CRISPR spacer
ctctttaaatgacccgttcgggtcttattttgg	Protospacer
* **********.*** *********    .. 

22. spacer 2.27|1491175|33|NZ_CP012363|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014988 (Lactobacillus paracasei strain IIA plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.697

cgctttaaatgatccgatcgggtcttcaagcac	CRISPR spacer
ctctttaaatgacccgttcgggtcttattttgg	Protospacer
* **********.*** *********    .. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2316359 : 2329650 14 Agrobacterium_phage(28.57%) transposase,protease NA
DBSCAN-SWA_2 2374934 : 2385171 13 uncultured_Caudovirales_phage(33.33%) tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage