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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP010549 Mycoplasma pneumoniae M2592 chromosome, complete genome 4 crisprs NA 4 1 1 0

Results visualization

1. NZ_CP010549
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010549_1 141248-141330 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010549_2 339091-339300 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010549_3 543553-543785 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010549_4 544015-544180 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP010549_2 2.1|339109|54|NZ_CP010549|CRT 339109-339162 54 NZ_CP010549.1 339073-339126 0 1.0
NZ_CP010549_2 2.1|339109|54|NZ_CP010549|CRT 339109-339162 54 NZ_CP010549.1 339085-339138 0 1.0
NZ_CP010549_2 2.1|339109|54|NZ_CP010549|CRT 339109-339162 54 NZ_CP010549.1 339253-339306 0 1.0
NZ_CP010549_2 2.2|339181|18|NZ_CP010549|CRT 339181-339198 18 NZ_CP010549.1 339073-339090 0 1.0
NZ_CP010549_2 2.2|339181|18|NZ_CP010549|CRT 339181-339198 18 NZ_CP010549.1 339085-339102 0 1.0
NZ_CP010549_2 2.2|339181|18|NZ_CP010549|CRT 339181-339198 18 NZ_CP010549.1 339289-339306 0 1.0
NZ_CP010549_2 2.4|339265|18|NZ_CP010549|CRT 339265-339282 18 NZ_CP010549.1 339073-339090 0 1.0
NZ_CP010549_2 2.4|339265|18|NZ_CP010549|CRT 339265-339282 18 NZ_CP010549.1 339085-339102 0 1.0
NZ_CP010549_2 2.4|339265|18|NZ_CP010549|CRT 339265-339282 18 NZ_CP010549.1 339289-339306 0 1.0
NZ_CP010549_2 2.3|339217|30|NZ_CP010549|CRT 339217-339246 30 NZ_CP010549.1 339073-339102 1 0.967
NZ_CP010549_2 2.3|339217|30|NZ_CP010549|CRT 339217-339246 30 NZ_CP010549.1 339085-339114 1 0.967
NZ_CP010549_2 2.3|339217|30|NZ_CP010549|CRT 339217-339246 30 NZ_CP010549.1 339277-339306 1 0.967
NZ_CP010549_2 2.2|339181|18|NZ_CP010549|CRT 339181-339198 18 NZ_CP010549.1 111898-111915 2 0.889
NZ_CP010549_2 2.2|339181|18|NZ_CP010549|CRT 339181-339198 18 NZ_CP010549.1 346058-346075 2 0.889
NZ_CP010549_2 2.2|339181|18|NZ_CP010549|CRT 339181-339198 18 NZ_CP010549.1 346070-346087 2 0.889
NZ_CP010549_2 2.2|339181|18|NZ_CP010549|CRT 339181-339198 18 NZ_CP010549.1 346082-346099 2 0.889
NZ_CP010549_2 2.2|339181|18|NZ_CP010549|CRT 339181-339198 18 NZ_CP010549.1 346094-346111 2 0.889
NZ_CP010549_2 2.2|339181|18|NZ_CP010549|CRT 339181-339198 18 NZ_CP010549.1 739662-739679 2 0.889
NZ_CP010549_2 2.2|339181|18|NZ_CP010549|CRT 339181-339198 18 NZ_CP010549.1 739674-739691 2 0.889
NZ_CP010549_2 2.4|339265|18|NZ_CP010549|CRT 339265-339282 18 NZ_CP010549.1 111898-111915 2 0.889
NZ_CP010549_2 2.4|339265|18|NZ_CP010549|CRT 339265-339282 18 NZ_CP010549.1 346058-346075 2 0.889
NZ_CP010549_2 2.4|339265|18|NZ_CP010549|CRT 339265-339282 18 NZ_CP010549.1 346070-346087 2 0.889
NZ_CP010549_2 2.4|339265|18|NZ_CP010549|CRT 339265-339282 18 NZ_CP010549.1 346082-346099 2 0.889
NZ_CP010549_2 2.4|339265|18|NZ_CP010549|CRT 339265-339282 18 NZ_CP010549.1 346094-346111 2 0.889
NZ_CP010549_2 2.4|339265|18|NZ_CP010549|CRT 339265-339282 18 NZ_CP010549.1 739662-739679 2 0.889
NZ_CP010549_2 2.4|339265|18|NZ_CP010549|CRT 339265-339282 18 NZ_CP010549.1 739674-739691 2 0.889

1. spacer 2.1|339109|54|NZ_CP010549|CRT matches to position: 339073-339126, mismatch: 0, identity: 1.0

aagtgccgagctaagtgccgagctaagtgccgagctaagtgccgagctaagtgc	CRISPR spacer
aagtgccgagctaagtgccgagctaagtgccgagctaagtgccgagctaagtgc	Protospacer
******************************************************

2. spacer 2.1|339109|54|NZ_CP010549|CRT matches to position: 339085-339138, mismatch: 0, identity: 1.0

aagtgccgagctaagtgccgagctaagtgccgagctaagtgccgagctaagtgc	CRISPR spacer
aagtgccgagctaagtgccgagctaagtgccgagctaagtgccgagctaagtgc	Protospacer
******************************************************

3. spacer 2.1|339109|54|NZ_CP010549|CRT matches to position: 339253-339306, mismatch: 0, identity: 1.0

aagtgccgagctaagtgccgagctaagtgccgagctaagtgccgagctaagtgc	CRISPR spacer
aagtgccgagctaagtgccgagctaagtgccgagctaagtgccgagctaagtgc	Protospacer
******************************************************

4. spacer 2.2|339181|18|NZ_CP010549|CRT matches to position: 339073-339090, mismatch: 0, identity: 1.0

aagtgccgagctaagtgc	CRISPR spacer
aagtgccgagctaagtgc	Protospacer
******************

5. spacer 2.2|339181|18|NZ_CP010549|CRT matches to position: 339085-339102, mismatch: 0, identity: 1.0

aagtgccgagctaagtgc	CRISPR spacer
aagtgccgagctaagtgc	Protospacer
******************

6. spacer 2.2|339181|18|NZ_CP010549|CRT matches to position: 339289-339306, mismatch: 0, identity: 1.0

aagtgccgagctaagtgc	CRISPR spacer
aagtgccgagctaagtgc	Protospacer
******************

7. spacer 2.4|339265|18|NZ_CP010549|CRT matches to position: 339073-339090, mismatch: 0, identity: 1.0

aagtgccgagctaagtgc	CRISPR spacer
aagtgccgagctaagtgc	Protospacer
******************

8. spacer 2.4|339265|18|NZ_CP010549|CRT matches to position: 339085-339102, mismatch: 0, identity: 1.0

aagtgccgagctaagtgc	CRISPR spacer
aagtgccgagctaagtgc	Protospacer
******************

9. spacer 2.4|339265|18|NZ_CP010549|CRT matches to position: 339289-339306, mismatch: 0, identity: 1.0

aagtgccgagctaagtgc	CRISPR spacer
aagtgccgagctaagtgc	Protospacer
******************

10. spacer 2.3|339217|30|NZ_CP010549|CRT matches to position: 339073-339102, mismatch: 1, identity: 0.967

aagtgccgagctaagtgccgagctmagtgc	CRISPR spacer
aagtgccgagctaagtgccgagctaagtgc	Protospacer
************************ *****

11. spacer 2.3|339217|30|NZ_CP010549|CRT matches to position: 339085-339114, mismatch: 1, identity: 0.967

aagtgccgagctaagtgccgagctmagtgc	CRISPR spacer
aagtgccgagctaagtgccgagctaagtgc	Protospacer
************************ *****

12. spacer 2.3|339217|30|NZ_CP010549|CRT matches to position: 339277-339306, mismatch: 1, identity: 0.967

aagtgccgagctaagtgccgagctmagtgc	CRISPR spacer
aagtgccgagctaagtgccgagctaagtgc	Protospacer
************************ *****

13. spacer 2.2|339181|18|NZ_CP010549|CRT matches to position: 111898-111915, mismatch: 2, identity: 0.889

aagtgccgagctaagtgc	CRISPR spacer
aagcgccgagctaagcgc	Protospacer
***.***********.**

14. spacer 2.2|339181|18|NZ_CP010549|CRT matches to position: 346058-346075, mismatch: 2, identity: 0.889

aagtgccgagctaagtgc	CRISPR spacer
aagcgccgagctaagcgc	Protospacer
***.***********.**

15. spacer 2.2|339181|18|NZ_CP010549|CRT matches to position: 346070-346087, mismatch: 2, identity: 0.889

aagtgccgagctaagtgc	CRISPR spacer
aagcgccgagctaagcgc	Protospacer
***.***********.**

16. spacer 2.2|339181|18|NZ_CP010549|CRT matches to position: 346082-346099, mismatch: 2, identity: 0.889

aagtgccgagctaagtgc	CRISPR spacer
aagcgccgagctaagcgc	Protospacer
***.***********.**

17. spacer 2.2|339181|18|NZ_CP010549|CRT matches to position: 346094-346111, mismatch: 2, identity: 0.889

aagtgccgagctaagtgc	CRISPR spacer
aagcgccgagctaagcgc	Protospacer
***.***********.**

18. spacer 2.2|339181|18|NZ_CP010549|CRT matches to position: 739662-739679, mismatch: 2, identity: 0.889

aagtgccgagctaagtgc	CRISPR spacer
aagcgccgagctaagcgc	Protospacer
***.***********.**

19. spacer 2.2|339181|18|NZ_CP010549|CRT matches to position: 739674-739691, mismatch: 2, identity: 0.889

aagtgccgagctaagtgc	CRISPR spacer
aagcgccgagctaagcgc	Protospacer
***.***********.**

20. spacer 2.4|339265|18|NZ_CP010549|CRT matches to position: 111898-111915, mismatch: 2, identity: 0.889

aagtgccgagctaagtgc	CRISPR spacer
aagcgccgagctaagcgc	Protospacer
***.***********.**

21. spacer 2.4|339265|18|NZ_CP010549|CRT matches to position: 346058-346075, mismatch: 2, identity: 0.889

aagtgccgagctaagtgc	CRISPR spacer
aagcgccgagctaagcgc	Protospacer
***.***********.**

22. spacer 2.4|339265|18|NZ_CP010549|CRT matches to position: 346070-346087, mismatch: 2, identity: 0.889

aagtgccgagctaagtgc	CRISPR spacer
aagcgccgagctaagcgc	Protospacer
***.***********.**

23. spacer 2.4|339265|18|NZ_CP010549|CRT matches to position: 346082-346099, mismatch: 2, identity: 0.889

aagtgccgagctaagtgc	CRISPR spacer
aagcgccgagctaagcgc	Protospacer
***.***********.**

24. spacer 2.4|339265|18|NZ_CP010549|CRT matches to position: 346094-346111, mismatch: 2, identity: 0.889

aagtgccgagctaagtgc	CRISPR spacer
aagcgccgagctaagcgc	Protospacer
***.***********.**

25. spacer 2.4|339265|18|NZ_CP010549|CRT matches to position: 739662-739679, mismatch: 2, identity: 0.889

aagtgccgagctaagtgc	CRISPR spacer
aagcgccgagctaagcgc	Protospacer
***.***********.**

26. spacer 2.4|339265|18|NZ_CP010549|CRT matches to position: 739674-739691, mismatch: 2, identity: 0.889

aagtgccgagctaagtgc	CRISPR spacer
aagcgccgagctaagcgc	Protospacer
***.***********.**

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP010549_2 2.3|339217|30|NZ_CP010549|CRT 339217-339246 30 NZ_CP018096 Chelatococcus daeguensis strain TAD1 plasmid pTAD1, complete sequence 481753-481782 8 0.733
NZ_CP010549_2 2.3|339217|30|NZ_CP010549|CRT 339217-339246 30 NZ_CP012399 Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence 719928-719957 8 0.733
NZ_CP010549_2 2.3|339217|30|NZ_CP010549|CRT 339217-339246 30 NZ_CP042276 Agrobacterium tumefaciens strain 186 plasmid pAt, complete sequence 261429-261458 9 0.7

1. spacer 2.3|339217|30|NZ_CP010549|CRT matches to NZ_CP018096 (Chelatococcus daeguensis strain TAD1 plasmid pTAD1, complete sequence) position: , mismatch: 8, identity: 0.733

aagtgccgagctaagtgccgagctmagtgc	CRISPR spacer
gggtgccgagctgggtgccgagctcggaga	Protospacer
..**********..********** .* * 

2. spacer 2.3|339217|30|NZ_CP010549|CRT matches to NZ_CP012399 (Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence) position: , mismatch: 8, identity: 0.733

aagtgccgagctaagtgccgagctmagtgc	CRISPR spacer
gggtgccgagctgggtgccgagctcggaga	Protospacer
..**********..********** .* * 

3. spacer 2.3|339217|30|NZ_CP010549|CRT matches to NZ_CP042276 (Agrobacterium tumefaciens strain 186 plasmid pAt, complete sequence) position: , mismatch: 9, identity: 0.7

aagtgccgagctaagtgccgagctmagtgc	CRISPR spacer
cagcgccgagctaagtgccgtgccgacgat	Protospacer
 **.**************** **. *  ..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 379169 : 386100 9 Staphylococcus_phage(16.67%) protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage