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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011801 Nitrospira moscoviensis strain NSP M-1 chromosome, complete genome 4 crisprs WYL,cas6,cas3,cas8b3,cas7,cas5,cas1,cas2,DEDDh,csa3,csx1 0 9 6 0

Results visualization

1. NZ_CP011801
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011801_1 1417623-1420297 Unclear I-A,I-B,II-B
37 spacers
cas2,cas1,cas5,cas7,cas8b3,cas3,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011801_2 1422980-1423371 Unclear I-A,I-B,II-B
5 spacers
cas2,cas1,cas5,cas7,cas8b3,cas3,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011801_3 2411168-2411270 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011801_4 2669610-2669736 Unclear NA
1 spacers
cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP011801_1 1.10|1418301|34|NZ_CP011801|PILER-CR,CRISPRCasFinder,CRT 1418301-1418334 34 NZ_CP022367 Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence 257450-257483 8 0.765
NZ_CP011801_1 1.17|1418801|34|NZ_CP011801|CRISPRCasFinder,CRT 1418801-1418834 34 NZ_CP049790 Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence 1874475-1874508 8 0.765
NZ_CP011801_1 1.17|1418801|34|NZ_CP011801|CRISPRCasFinder,CRT 1418801-1418834 34 NZ_CP049794 Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence 797370-797403 8 0.765
NZ_CP011801_1 1.17|1418801|34|NZ_CP011801|CRISPRCasFinder,CRT 1418801-1418834 34 NZ_CP049792 Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence 578846-578879 8 0.765
NZ_CP011801_1 1.17|1418801|34|NZ_CP011801|CRISPRCasFinder,CRT 1418801-1418834 34 NZ_CP016915 Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence 449109-449142 8 0.765
NZ_CP011801_1 1.35|1420081|35|NZ_CP011801|CRISPRCasFinder,CRT,PILER-CR 1420081-1420115 35 NZ_CP015523 Sphingomonas sp. NIC1 plasmid unnamed2, complete sequence 127736-127770 8 0.771
NZ_CP011801_1 1.35|1420081|35|NZ_CP011801|CRISPRCasFinder,CRT,PILER-CR 1420081-1420115 35 NZ_CP029986 Sphingomonas sp. FARSPH plasmid p01, complete sequence 199971-200005 8 0.771
NZ_CP011801_2 2.3|1423158|34|NZ_CP011801|PILER-CR,CRISPRCasFinder,CRT 1423158-1423191 34 NZ_CP017076 Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence 360072-360105 8 0.765
NZ_CP011801_1 1.10|1418301|34|NZ_CP011801|PILER-CR,CRISPRCasFinder,CRT 1418301-1418334 34 NC_021347 Rhodococcus phage E3, complete genome 94963-94996 9 0.735
NZ_CP011801_1 1.31|1419796|34|NZ_CP011801|CRISPRCasFinder,CRT,PILER-CR 1419796-1419829 34 NZ_CP041045 Paracoccus sp. AK26 plasmid pAK1, complete sequence 207999-208032 9 0.735
NZ_CP011801_2 2.2|1423088|34|NZ_CP011801|PILER-CR,CRISPRCasFinder,CRT 1423088-1423121 34 NZ_CP016083 Streptomyces sp. SAT1 plasmid unnamed3, complete sequence 814641-814674 9 0.735
NZ_CP011801_1 1.17|1418801|34|NZ_CP011801|CRISPRCasFinder,CRT 1418801-1418834 34 NC_022599 Micrococcus sp. V7 plasmid pLMV7, complete sequence 89274-89307 10 0.706
NZ_CP011801_1 1.21|1419088|34|NZ_CP011801|CRISPRCasFinder,CRT,PILER-CR 1419088-1419121 34 NZ_CP024309 Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3b, complete sequence 10942-10975 10 0.706
NZ_CP011801_1 1.31|1419796|34|NZ_CP011801|CRISPRCasFinder,CRT,PILER-CR 1419796-1419829 34 NZ_CP023408 Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence 95004-95037 10 0.706
NZ_CP011801_1 1.31|1419796|34|NZ_CP011801|CRISPRCasFinder,CRT,PILER-CR 1419796-1419829 34 MK494113 Mycobacterium phage Refuge, complete genome 8678-8711 10 0.706
NZ_CP011801_1 1.32|1419866|36|NZ_CP011801|CRISPRCasFinder,CRT,PILER-CR 1419866-1419901 36 HM046302 Pseudomonas phage phi6 clone CMA222 P8 protein gene, partial cds; P12 protein and P9 protein genes, complete cds; and P5a protein and P5b protein genes, partial cds 461-496 10 0.722
NZ_CP011801_1 1.32|1419866|36|NZ_CP011801|CRISPRCasFinder,CRT,PILER-CR 1419866-1419901 36 HM046304 Pseudomonas phage phi6 clone CMA238 P12 protein gene, partial cds; P9 protein gene, complete cds; and P5a protein and P5b protein genes, partial cds 429-464 10 0.722
NZ_CP011801_1 1.32|1419866|36|NZ_CP011801|CRISPRCasFinder,CRT,PILER-CR 1419866-1419901 36 HM046303 Pseudomonas phage phi6 clone CMA231 P8 protein gene, partial cds; P12 protein and P9 protein genes, complete cds; and P5a protein and P5b protein genes, partial cds 457-492 10 0.722
NZ_CP011801_1 1.30|1419726|34|NZ_CP011801|CRISPRCasFinder,CRT,PILER-CR 1419726-1419759 34 NC_017958 Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence 803097-803130 11 0.676
NZ_CP011801_1 1.31|1419796|34|NZ_CP011801|CRISPRCasFinder,CRT,PILER-CR 1419796-1419829 34 NC_016585 Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence 696899-696932 11 0.676

1. spacer 1.10|1418301|34|NZ_CP011801|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 8, identity: 0.765

tagtcgaggctgatgaccggcttgccgtcctcac	CRISPR spacer
tcggtcaggttgatgaccgtcttgccgtcctccg	Protospacer
* * . ***.********* ************  

2. spacer 1.17|1418801|34|NZ_CP011801|CRISPRCasFinder,CRT matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.765

accgccaccaccgcacccaccaagcgccgccggc	CRISPR spacer
accgccaccaccgcaccgacccagctcggtagcg	Protospacer
***************** *** *** * *. *  

3. spacer 1.17|1418801|34|NZ_CP011801|CRISPRCasFinder,CRT matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.765

accgccaccaccgcacccaccaagcgccgccggc	CRISPR spacer
accgccaccaccgcaccgacccagctcggtagcg	Protospacer
***************** *** *** * *. *  

4. spacer 1.17|1418801|34|NZ_CP011801|CRISPRCasFinder,CRT matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.765

accgccaccaccgcacccaccaagcgccgccggc	CRISPR spacer
accgccaccaccgcaccgacccagctcggtagcg	Protospacer
***************** *** *** * *. *  

5. spacer 1.17|1418801|34|NZ_CP011801|CRISPRCasFinder,CRT matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.765

accgccaccaccgcacccaccaagcgccgccggc	CRISPR spacer
accgccaccaccgcaccgacccagctcggtagcg	Protospacer
***************** *** *** * *. *  

6. spacer 1.35|1420081|35|NZ_CP011801|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015523 (Sphingomonas sp. NIC1 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.771

aataccg----ggagctgatcgcgcgcgaagccgacgcg	CRISPR spacer
----ccgtcgaggagctgatcgcgcgcgacgccgaccgc	Protospacer
    ***    ****************** ******   

7. spacer 1.35|1420081|35|NZ_CP011801|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029986 (Sphingomonas sp. FARSPH plasmid p01, complete sequence) position: , mismatch: 8, identity: 0.771

aataccg----ggagctgatcgcgcgcgaagccgacgcg	CRISPR spacer
----ccgtcgaggagctgatcgcgcgcgacgccgaccgc	Protospacer
    ***    ****************** ******   

8. spacer 2.3|1423158|34|NZ_CP011801|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 8, identity: 0.765

agggtcctccaggcattgcccacgcgcgccggcg	CRISPR spacer
atggatctcgaggcattgcccacgcgcgccatgc	Protospacer
* ** .*** ********************.   

9. spacer 1.10|1418301|34|NZ_CP011801|PILER-CR,CRISPRCasFinder,CRT matches to NC_021347 (Rhodococcus phage E3, complete genome) position: , mismatch: 9, identity: 0.735

tagtcgaggctgatgaccggcttgccgtcctcac	CRISPR spacer
gcgtcgaggctgatgacctgattgccgaggccgc	Protospacer
  **************** * ******   .*.*

10. spacer 1.31|1419796|34|NZ_CP011801|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041045 (Paracoccus sp. AK26 plasmid pAK1, complete sequence) position: , mismatch: 9, identity: 0.735

gtgacagccccggccagcgggacgacgt-tgacca	CRISPR spacer
tcgccagcctcggccagcgggacgaggtgcgggc-	Protospacer
 .* *****.*************** ** .*. * 

11. spacer 2.2|1423088|34|NZ_CP011801|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.735

gcgagcaagaccttcatcaagggtctgtcacaga	CRISPR spacer
ggccgcaagacctccatcaacggtctgtcggacg	Protospacer
*   *********.****** ********. * .

12. spacer 1.17|1418801|34|NZ_CP011801|CRISPRCasFinder,CRT matches to NC_022599 (Micrococcus sp. V7 plasmid pLMV7, complete sequence) position: , mismatch: 10, identity: 0.706

accgccaccaccgcacccaccaagcgccgccggc	CRISPR spacer
atgaccaccaccgcacccacccaccgcctcacca	Protospacer
*. .***************** * **** *    

13. spacer 1.21|1419088|34|NZ_CP011801|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024309 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3b, complete sequence) position: , mismatch: 10, identity: 0.706

atctggctgggaaacgtggccttcatggcgtcga	CRISPR spacer
gtctggctgggaaacgtgtcgttcaaacatacgg	Protospacer
.***************** * **** .    **.

14. spacer 1.31|1419796|34|NZ_CP011801|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.706

gtgacagccccggccagcgggacgacgttgacca	CRISPR spacer
agggggatcgcggccagcgcgacgacgttggcca	Protospacer
. *. ...* ********* **********.***

15. spacer 1.31|1419796|34|NZ_CP011801|CRISPRCasFinder,CRT,PILER-CR matches to MK494113 (Mycobacterium phage Refuge, complete genome) position: , mismatch: 10, identity: 0.706

gtgacagccccggccagcgggacgacgttgacca	CRISPR spacer
aagatctgaccggccagcgggccgaggttgaccg	Protospacer
. **.    ************ *** *******.

16. spacer 1.32|1419866|36|NZ_CP011801|CRISPRCasFinder,CRT,PILER-CR matches to HM046302 (Pseudomonas phage phi6 clone CMA222 P8 protein gene, partial cds; P12 protein and P9 protein genes, complete cds; and P5a protein and P5b protein genes, partial cds) position: , mismatch: 10, identity: 0.722

ctcataaggcgcagcgtggacttcttcacgctctct	CRISPR spacer
ggtgaaaggcgcagcttggacttcttcaggctgctt	Protospacer
  .. ********** ************ *** ..*

17. spacer 1.32|1419866|36|NZ_CP011801|CRISPRCasFinder,CRT,PILER-CR matches to HM046304 (Pseudomonas phage phi6 clone CMA238 P12 protein gene, partial cds; P9 protein gene, complete cds; and P5a protein and P5b protein genes, partial cds) position: , mismatch: 10, identity: 0.722

ctcataaggcgcagcgtggacttcttcacgctctct	CRISPR spacer
ggtgaaaggcgcagcttggacttcttcaggctgctt	Protospacer
  .. ********** ************ *** ..*

18. spacer 1.32|1419866|36|NZ_CP011801|CRISPRCasFinder,CRT,PILER-CR matches to HM046303 (Pseudomonas phage phi6 clone CMA231 P8 protein gene, partial cds; P12 protein and P9 protein genes, complete cds; and P5a protein and P5b protein genes, partial cds) position: , mismatch: 10, identity: 0.722

ctcataaggcgcagcgtggacttcttcacgctctct	CRISPR spacer
ggtgaaaggcgcagcttggacttcttcaggctgctt	Protospacer
  .. ********** ************ *** ..*

19. spacer 1.30|1419726|34|NZ_CP011801|CRISPRCasFinder,CRT,PILER-CR matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 11, identity: 0.676

cttcccgtcgtagccggtcagtttctcgccgcgc	CRISPR spacer
gaagacgtcgtcgccggtcagcttctcgcgcggg	Protospacer
     ****** *********.*******   * 

20. spacer 1.31|1419796|34|NZ_CP011801|CRISPRCasFinder,CRT,PILER-CR matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 11, identity: 0.676

gtgacagccccggccagcgggacgacgttgacca	CRISPR spacer
ccctccaccccggccggcgggacggcgttgatgt	Protospacer
 .  * .********.********.******.  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 80186 : 108138 29 Acidithiobacillus_phage(37.5%) transposase NA
DBSCAN-SWA_2 1215738 : 1224029 8 uncultured_virus(33.33%) NA NA
DBSCAN-SWA_3 2014078 : 2026394 8 Synechococcus_phage(28.57%) tRNA NA
DBSCAN-SWA_4 2787241 : 2795732 11 Bacillus_phage(28.57%) transposase NA
DBSCAN-SWA_5 3241451 : 3249527 6 Paramecium_bursaria_Chlorella_virus(16.67%) tRNA NA
DBSCAN-SWA_6 4375822 : 4429908 50 Acidithiobacillus_phage(16.67%) integrase,transposase,tRNA attL 4372585:4372600|attR 4414894:4414909
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage